Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0990530 | XP_013452099.1 | 88.021 | 768 | 71 | 2 | 1 | 747 | 1 | 768 | 0.0 | 1280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0990530 | A0A072U8Z6 | 88.021 | 768 | 71 | 2 | 1 | 747 | 1 | 768 | 0.0 | 1280 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0890310 | Msa0990530 | 0.901704 | 2.047698e-78 | -8.615850e-47 |
| Msa0925190 | Msa0990530 | 0.811768 | 5.935845e-51 | -8.615850e-47 |
| Msa0955280 | Msa0990530 | 0.813213 | 2.867896e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0990530 | MtrunA17_Chr6g0471251 | 88.021 | 768 | 71 | 2 | 1 | 747 | 1 | 768 | 0.0 | 1280 |
| Msa0990530 | MtrunA17_Chr2g0325661 | 65.188 | 879 | 171 | 9 | 2 | 747 | 1 | 877 | 0.0 | 991 |
| Msa0990530 | MtrunA17_Chr2g0325351 | 55.220 | 728 | 235 | 13 | 55 | 746 | 16 | 688 | 0.0 | 627 |
| Msa0990530 | MtrunA17_Chr2g0325621 | 53.977 | 704 | 257 | 10 | 55 | 747 | 14 | 661 | 0.0 | 567 |
| Msa0990530 | MtrunA17_Chr2g0325811 | 44.186 | 860 | 334 | 14 | 2 | 745 | 1 | 830 | 0.0 | 547 |
| Msa0990530 | MtrunA17_Chr2g0325611 | 58.456 | 544 | 182 | 4 | 203 | 746 | 91 | 590 | 0.0 | 530 |
| Msa0990530 | MtrunA17_Chr2g0325711 | 45.214 | 794 | 311 | 13 | 57 | 727 | 26 | 818 | 2.08e-180 | 536 |
| Msa0990530 | MtrunA17_Chr2g0280141 | 41.537 | 833 | 304 | 17 | 57 | 746 | 25 | 817 | 8.83e-159 | 480 |
| Msa0990530 | MtrunA17_Chr2g0325361 | 50.153 | 654 | 235 | 8 | 128 | 746 | 480 | 1077 | 1.39e-153 | 474 |
| Msa0990530 | MtrunA17_Chr2g0325361 | 36.166 | 553 | 220 | 13 | 47 | 486 | 2 | 534 | 1.12e-57 | 213 |
| Msa0990530 | MtrunA17_Chr2g0325361 | 40.081 | 247 | 102 | 1 | 266 | 466 | 342 | 588 | 2.39e-31 | 131 |
| Msa0990530 | MtrunA17_Chr2g0325361 | 45.413 | 218 | 101 | 2 | 266 | 465 | 412 | 629 | 8.28e-30 | 127 |
| Msa0990530 | MtrunA17_Chr2g0325361 | 34.177 | 316 | 171 | 4 | 164 | 458 | 365 | 664 | 1.30e-26 | 116 |
| Msa0990530 | MtrunA17_Chr2g0325761 | 53.078 | 601 | 136 | 13 | 2 | 466 | 1 | 591 | 4.38e-153 | 461 |
| Msa0990530 | MtrunA17_Chr2g0325761 | 60.606 | 99 | 38 | 1 | 643 | 741 | 591 | 688 | 2.82e-26 | 114 |
| Msa0990530 | MtrunA17_Chr2g0325321 | 44.301 | 772 | 244 | 11 | 48 | 646 | 3 | 761 | 2.13e-149 | 454 |
| Msa0990530 | MtrunA17_Chr2g0325701 | 46.401 | 653 | 268 | 11 | 5 | 643 | 5 | 589 | 2.41e-143 | 433 |
| Msa0990530 | MtrunA17_Chr5g0434761 | 72.075 | 265 | 74 | 0 | 482 | 746 | 1 | 265 | 4.94e-125 | 374 |
| Msa0990530 | MtrunA17_Chr2g0333341 | 41.748 | 721 | 286 | 15 | 2 | 688 | 1 | 621 | 5.78e-118 | 369 |
| Msa0990530 | MtrunA17_Chr2g0325231 | 55.838 | 394 | 161 | 3 | 263 | 656 | 502 | 882 | 1.51e-117 | 375 |
| Msa0990530 | MtrunA17_Chr2g0325231 | 37.977 | 603 | 213 | 17 | 1 | 480 | 1 | 565 | 9.32e-62 | 223 |
| Msa0990530 | MtrunA17_Chr5g0416271 | 42.561 | 578 | 229 | 10 | 74 | 651 | 14 | 488 | 5.81e-114 | 353 |
| Msa0990530 | MtrunA17_Chr2g0325631 | 71.053 | 266 | 77 | 0 | 482 | 747 | 1 | 266 | 6.34e-111 | 337 |
| Msa0990530 | MtrunA17_Chr2g0325721 | 42.446 | 556 | 171 | 14 | 2 | 465 | 1 | 499 | 1.86e-94 | 303 |
| Msa0990530 | MtrunA17_Chr2g0325861 | 42.021 | 564 | 249 | 10 | 162 | 665 | 296 | 841 | 8.78e-94 | 311 |
| Msa0990530 | MtrunA17_Chr2g0325861 | 39.309 | 608 | 178 | 15 | 1 | 466 | 1 | 559 | 1.60e-79 | 272 |
| Msa0990530 | MtrunA17_Chr2g0325221 | 39.028 | 597 | 224 | 13 | 2 | 467 | 1 | 588 | 6.76e-89 | 294 |
| Msa0990530 | MtrunA17_Chr2g0325221 | 58.824 | 102 | 41 | 1 | 644 | 745 | 599 | 699 | 1.05e-25 | 113 |
| Msa0990530 | MtrunA17_Chr2g0325651 | 44.828 | 435 | 158 | 9 | 1 | 403 | 1 | 385 | 1.60e-85 | 275 |
| Msa0990530 | MtrunA17_Chr2g0325651 | 39.604 | 202 | 108 | 3 | 288 | 482 | 193 | 387 | 2.68e-17 | 84.7 |
| Msa0990530 | MtrunA17_Chr2g0325281 | 40.596 | 537 | 183 | 8 | 50 | 463 | 6 | 529 | 2.67e-84 | 279 |
| Msa0990530 | MtrunA17_Chr2g0325281 | 37.097 | 372 | 203 | 6 | 130 | 477 | 228 | 592 | 1.38e-33 | 137 |
| Msa0990530 | MtrunA17_Chr5g0434741 | 46.849 | 365 | 121 | 8 | 2 | 354 | 1 | 304 | 5.68e-77 | 250 |
| Msa0990530 | MtrunA17_Chr2g0325261 | 46.667 | 360 | 132 | 6 | 1 | 355 | 1 | 305 | 2.39e-76 | 248 |
| Msa0990530 | MtrunA17_Chr2g0325341 | 46.667 | 360 | 132 | 6 | 1 | 355 | 1 | 305 | 2.39e-76 | 248 |
| Msa0990530 | MtrunA17_Chr2g0325691 | 42.773 | 512 | 219 | 12 | 5 | 467 | 5 | 491 | 7.33e-73 | 251 |
| Msa0990530 | MtrunA17_Chr2g0325691 | 37.027 | 370 | 162 | 6 | 162 | 473 | 363 | 719 | 3.63e-33 | 136 |
| Msa0990530 | MtrunA17_Chr2g0325691 | 37.987 | 308 | 169 | 5 | 162 | 461 | 307 | 600 | 4.09e-28 | 120 |
| Msa0990530 | MtrunA17_Chr2g0325291 | 59.204 | 201 | 82 | 0 | 501 | 701 | 6 | 206 | 6.35e-67 | 220 |
| Msa0990530 | MtrunA17_Chr2g0332961 | 47.119 | 295 | 127 | 4 | 324 | 616 | 86 | 353 | 4.48e-59 | 204 |
| Msa0990530 | MtrunA17_Chr2g0332961 | 32.014 | 278 | 133 | 5 | 87 | 363 | 2 | 224 | 8.20e-21 | 94.7 |
| Msa0990530 | MtrunA17_Chr2g0325781 | 40.556 | 360 | 154 | 10 | 2 | 360 | 1 | 301 | 4.15e-56 | 194 |
| Msa0990530 | MtrunA17_Chr2g0325331 | 69.677 | 155 | 47 | 0 | 482 | 636 | 1 | 155 | 8.63e-56 | 188 |
| Msa0990530 | MtrunA17_Chr2g0325241 | 42.222 | 315 | 159 | 3 | 266 | 568 | 121 | 424 | 1.27e-54 | 194 |
| Msa0990530 | MtrunA17_Chr2g0325741 | 42.424 | 330 | 141 | 11 | 1 | 310 | 1 | 301 | 2.12e-53 | 187 |
| Msa0990530 | MtrunA17_Chr2g0332951 | 45.344 | 247 | 90 | 5 | 401 | 643 | 2 | 207 | 1.25e-49 | 173 |
| Msa0990530 | MtrunA17_Chr2g0325771 | 62.573 | 171 | 54 | 2 | 475 | 643 | 10 | 172 | 1.16e-48 | 169 |
| Msa0990530 | MtrunA17_Chr2g0325311 | 68.908 | 119 | 35 | 2 | 630 | 746 | 1 | 119 | 4.51e-44 | 154 |
| Msa0990530 | MtrunA17_Chr7g0235901 | 37.931 | 348 | 178 | 5 | 106 | 452 | 1 | 311 | 4.96e-43 | 158 |
| Msa0990530 | MtrunA17_Chr8g0361651 | 40.244 | 328 | 155 | 7 | 418 | 738 | 106 | 399 | 5.12e-42 | 160 |
| Msa0990530 | MtrunA17_Chr3g0140591 | 54.545 | 165 | 74 | 1 | 479 | 643 | 6 | 169 | 8.96e-41 | 147 |
| Msa0990530 | MtrunA17_Chr2g0325271 | 66.346 | 104 | 35 | 0 | 643 | 746 | 40 | 143 | 6.03e-39 | 140 |
| Msa0990530 | MtrunA17_Chr4g0024061 | 40.079 | 252 | 115 | 4 | 491 | 741 | 432 | 648 | 1.54e-35 | 144 |
| Msa0990530 | MtrunA17_Chr2g0325641 | 44.361 | 266 | 110 | 5 | 240 | 477 | 56 | 311 | 1.76e-35 | 137 |
| Msa0990530 | MtrunA17_Chr2g0325641 | 40.306 | 196 | 97 | 5 | 288 | 483 | 3 | 178 | 9.20e-15 | 76.3 |
| Msa0990530 | MtrunA17_Chr2g0325641 | 41.304 | 138 | 81 | 0 | 328 | 465 | 1 | 138 | 1.22e-12 | 69.7 |
| Msa0990530 | MtrunA17_Chr2g0325641 | 34.343 | 198 | 112 | 3 | 222 | 408 | 115 | 305 | 3.37e-12 | 68.6 |
| Msa0990530 | MtrunA17_Chr5g0434751 | 49.315 | 219 | 97 | 2 | 266 | 477 | 65 | 276 | 2.37e-31 | 124 |
| Msa0990530 | MtrunA17_Chr5g0434751 | 43.478 | 184 | 104 | 0 | 272 | 455 | 1 | 184 | 4.83e-19 | 88.6 |
| Msa0990530 | MtrunA17_Chr5g0434751 | 43.275 | 171 | 83 | 2 | 300 | 456 | 1 | 171 | 1.51e-13 | 72.0 |
| Msa0990530 | MtrunA17_Chr5g0434751 | 33.624 | 229 | 113 | 5 | 202 | 398 | 39 | 260 | 6.44e-11 | 64.3 |
| Msa0990530 | MtrunA17_Chr2g0325751 | 54.478 | 134 | 54 | 1 | 344 | 477 | 9 | 135 | 9.99e-28 | 109 |
| Msa0990530 | MtrunA17_Chr2g0325751 | 42.735 | 117 | 60 | 1 | 282 | 398 | 3 | 112 | 4.69e-14 | 70.5 |
| Msa0990530 | MtrunA17_Chr2g0325751 | 36.486 | 148 | 84 | 2 | 268 | 415 | 3 | 140 | 1.61e-13 | 68.9 |
| Msa0990530 | MtrunA17_Chr2g0325201 | 45.860 | 157 | 77 | 2 | 206 | 354 | 72 | 228 | 4.64e-26 | 107 |
| Msa0990530 | MtrunA17_Chr7g0235921 | 72.165 | 97 | 26 | 1 | 560 | 656 | 1 | 96 | 5.85e-25 | 100 |
| Msa0990530 | MtrunA17_Chr4g0044221 | 58.163 | 98 | 38 | 2 | 483 | 578 | 195 | 291 | 4.73e-24 | 103 |
| Msa0990530 | MtrunA17_Chr4g0044221 | 31.892 | 185 | 72 | 2 | 157 | 293 | 12 | 190 | 1.71e-12 | 69.3 |
| Msa0990530 | MtrunA17_Chr2g0325801 | 64.615 | 65 | 23 | 0 | 131 | 195 | 62 | 126 | 2.43e-19 | 84.7 |
| Msa0990530 | MtrunA17_Chr4g0053711 | 27.237 | 257 | 160 | 6 | 512 | 745 | 189 | 441 | 2.29e-17 | 86.3 |
| Msa0990530 | MtrunA17_Chr2g0325791 | 40.411 | 146 | 76 | 2 | 271 | 416 | 22 | 156 | 1.76e-15 | 78.6 |
| Msa0990530 | MtrunA17_Chr2g0325791 | 38.017 | 121 | 75 | 0 | 279 | 399 | 47 | 167 | 1.79e-12 | 69.3 |
| Msa0990530 | MtrunA17_Chr2g0325211 | 35.577 | 208 | 88 | 3 | 267 | 474 | 2 | 163 | 3.65e-13 | 68.9 |
| Msa0990530 | MtrunA17_Chr3g0140581 | 34.868 | 152 | 54 | 3 | 139 | 245 | 4 | 155 | 1.10e-12 | 66.6 |
| Msa0990530 | MtrunA17_Chr3g0101121 | 25.132 | 378 | 242 | 10 | 378 | 741 | 6 | 356 | 7.63e-12 | 68.6 |
| Msa0990530 | MtrunA17_Chr5g0445281 | 25.389 | 193 | 138 | 3 | 554 | 745 | 198 | 385 | 1.36e-11 | 67.8 |
| Msa0990530 | MtrunA17_Chr8g0337661 | 22.391 | 460 | 311 | 12 | 321 | 746 | 4 | 451 | 9.07e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0990530 | AT5G27220.1 | 27.064 | 218 | 149 | 4 | 511 | 725 | 861 | 1071 | 2.64e-14 | 77.8 |
| Msa0990530 | AT5G27220.1 | 25.364 | 481 | 295 | 9 | 202 | 640 | 342 | 800 | 3.59e-12 | 70.9 |
| Msa0990530 | AT5G27220.3 | 27.064 | 218 | 149 | 4 | 511 | 725 | 861 | 1071 | 2.64e-14 | 77.8 |
| Msa0990530 | AT5G27220.3 | 25.364 | 481 | 295 | 9 | 202 | 640 | 342 | 800 | 3.59e-12 | 70.9 |
| Msa0990530 | AT5G27220.4 | 25.364 | 481 | 295 | 9 | 202 | 640 | 342 | 800 | 2.17e-12 | 71.2 |
| Msa0990530 | AT5G27220.2 | 25.364 | 481 | 295 | 9 | 202 | 640 | 342 | 800 | 2.17e-12 | 71.2 |
| Msa0990530 | AT5G48385.1 | 24.542 | 273 | 186 | 5 | 493 | 746 | 185 | 456 | 4.59e-12 | 69.7 |
Find 115 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCAATATCTCTCTTTA+TGG | 0.095605 | 6_4:-52324995 | None:intergenic |
| TACAAATCTGTTTCGCATTC+TGG | 0.128005 | 6_4:-52328511 | None:intergenic |
| GCTGAAGAATGAAGTTAATT+TGG | 0.221383 | 6_4:+52324912 | Msa0990530:CDS |
| CTTCTGCTCTTGTCAATATA+TGG | 0.237594 | 6_4:+52326851 | Msa0990530:CDS |
| TTAGGGCTATATGTATTTCT+TGG | 0.252680 | 6_4:+52328883 | Msa0990530:three_prime_UTR |
| TGCATCAAGCTCTTTCTCTT+TGG | 0.259439 | 6_4:-52325172 | None:intergenic |
| GATGGGAAGTTAAATGTTAA+AGG | 0.266690 | 6_4:+52324550 | Msa0990530:CDS |
| AGATCCATCTAGACTTGTTT+TGG | 0.287421 | 6_4:+52326619 | Msa0990530:CDS |
| GAGTCAAAGCTGAACGAATT+TGG | 0.299814 | 6_4:+52325828 | Msa0990530:CDS |
| TTATCAAACAACCTCTTAAC+TGG | 0.301313 | 6_4:-52324769 | None:intergenic |
| ATATTCTCCGACTTCAAGTT+TGG | 0.310094 | 6_4:+52324684 | Msa0990530:CDS |
| CTTCGATGAATGCGAAGTTT+TGG | 0.315808 | 6_4:+52326886 | Msa0990530:CDS |
| GAAGCAGATCCTCAGATTCT+AGG | 0.330062 | 6_4:-52328742 | None:intergenic |
| CGTACACAAGGTTTGATACT+TGG | 0.333241 | 6_4:-52326746 | None:intergenic |
| AGATCAAGAAATCGCTAGTC+TGG | 0.335747 | 6_4:+52328688 | Msa0990530:CDS |
| ATGGAGCTGTTTGAGACTTT+CGG | 0.343255 | 6_4:+52326944 | Msa0990530:CDS |
| CCGAAGGAGCCTGAGTTAAC+AGG | 0.347686 | 6_4:+52325858 | Msa0990530:CDS |
| ATCAATTAATTGATTCTTGT+CGG | 0.348922 | 6_4:-52328471 | None:intergenic |
| GCAGCTTGAAGGCCAGAAAA+AGG | 0.352475 | 6_4:+52325548 | Msa0990530:CDS |
| GCGACTTGAAGGTCATATTA+AGG | 0.356638 | 6_4:+52325296 | Msa0990530:CDS |
| TTCCTATAGTTGATTAATGA+TGG | 0.374064 | 6_4:+52324483 | Msa0990530:exon |
| AAACGAGCATAAAGGCAAAT+AGG | 0.375197 | 6_4:+52328796 | Msa0990530:CDS |
| AAAAGTTGCTGAATGTAATC+TGG | 0.384486 | 6_4:+52325140 | Msa0990530:CDS |
| CCTGTTAACTCAGGCTCCTT+CGG | 0.386860 | 6_4:-52325858 | None:intergenic |
| ATTTCCAAAACAAGTCTAGA+TGG | 0.395227 | 6_4:-52326623 | None:intergenic |
| GCAAGTTGAAGGACGAGAAA+TGG | 0.399180 | 6_4:+52325506 | Msa0990530:CDS |
| CTTTAGTAACTGCTTCCTTT+CGG | 0.405060 | 6_4:-52325235 | None:intergenic |
| GGAACTTGAAAATCATATAA+AGG | 0.412247 | 6_4:+52325464 | Msa0990530:CDS |
| CTCATGAGCTTTGTTGTAAA+CGG | 0.418153 | 6_4:+52329027 | Msa0990530:three_prime_UTR |
| GCTCAAATGAAGCGACTTGA+AGG | 0.418905 | 6_4:+52325285 | Msa0990530:CDS |
| TCGAAGGAGAAGTACTTAGA+AGG | 0.422549 | 6_4:+52325369 | Msa0990530:CDS |
| TGAAATTTACAACAAAATGC+TGG | 0.427440 | 6_4:+52325074 | Msa0990530:CDS |
| TATTCTCCGACTTCAAGTTT+GGG | 0.431574 | 6_4:+52324685 | Msa0990530:CDS |
| CATTAATCAACTATAGGAAC+TGG | 0.434716 | 6_4:-52324479 | None:intergenic |
| TCAAAGTCCTCACAAGAAAC+AGG | 0.437023 | 6_4:-52324622 | None:intergenic |
| GTTGAAGTTAGCACGTGATT+TGG | 0.438648 | 6_4:+52326778 | Msa0990530:CDS |
| ATCCATCATTAATCAACTAT+AGG | 0.441487 | 6_4:-52324485 | None:intergenic |
| GCAGATTGAAGTACAATTCA+AGG | 0.442680 | 6_4:+52325800 | Msa0990530:CDS |
| TCATAATGTGGTGACATCTT+TGG | 0.454315 | 6_4:-52324823 | None:intergenic |
| ATGGGAAGTTAAATGTTAAA+GGG | 0.459469 | 6_4:+52324551 | Msa0990530:CDS |
| TTCTTACACAGTGGAGTACC+GGG | 0.460980 | 6_4:-52326656 | None:intergenic |
| CTTCTTACACAGTGGAGTAC+CGG | 0.463423 | 6_4:-52326657 | None:intergenic |
| TCAAAAGAGGTGCAGCTTGA+AGG | 0.463639 | 6_4:+52325537 | Msa0990530:CDS |
| CTCTTCTTAACAGAAACATC+AGG | 0.468989 | 6_4:-52324724 | None:intergenic |
| AACTAACTCAATTGAAATCA+AGG | 0.469031 | 6_4:+52328550 | Msa0990530:CDS |
| TCAATTCATGCTCCTTCACT+CGG | 0.469446 | 6_4:-52325602 | None:intergenic |
| AGAGAATCAGTGCAAAGAAC+GGG | 0.471141 | 6_4:+52325332 | Msa0990530:CDS |
| AGAGAATCAGTTCAAAGTAA+AGG | 0.475996 | 6_4:+52325752 | Msa0990530:CDS |
| CATGAGCTAAACGAGCATAA+AGG | 0.477090 | 6_4:+52328788 | Msa0990530:CDS |
| CTTGAAGTCGGAGAATATCT+TGG | 0.477500 | 6_4:-52324679 | None:intergenic |
| TTTCTTAACAGAAATGTTCA+AGG | 0.479459 | 6_4:-52324800 | None:intergenic |
| TTCCCTCATCACATCTGAAT+GGG | 0.479678 | 6_4:-52324599 | None:intergenic |
| AGAACTCGAAGGTCGAGTTA+AGG | 0.480507 | 6_4:+52325632 | Msa0990530:CDS |
| ATACTACACTGCCAGTTAAG+AGG | 0.487504 | 6_4:+52324758 | Msa0990530:CDS |
| GTTCCCTCATCACATCTGAA+TGG | 0.497529 | 6_4:-52324600 | None:intergenic |
| GTGTGTTTCCCTGTTAACTC+AGG | 0.500333 | 6_4:-52325867 | None:intergenic |
| CGGTACTCCACTGTGTAAGA+AGG | 0.507795 | 6_4:+52326658 | Msa0990530:CDS |
| ATTCAGCTGTGCATATAACT+TGG | 0.512901 | 6_4:+52328448 | Msa0990530:CDS |
| TTGATTTGAAATACTCAACT+TGG | 0.512958 | 6_4:-52325686 | None:intergenic |
| AATTGTTTAACAATTGCAAA+AGG | 0.515248 | 6_4:+52324941 | Msa0990530:CDS |
| AAAGGAGTTAGAATTAAAAG+AGG | 0.516014 | 6_4:+52325566 | Msa0990530:CDS |
| GATCAATTAAGTCATACAAT+TGG | 0.519839 | 6_4:+52326506 | Msa0990530:CDS |
| CGAAAGGAAGCAGTTACTAA+AGG | 0.530759 | 6_4:+52325236 | Msa0990530:CDS |
| TGGTAGAACAAGTTTGCAGT+TGG | 0.534933 | 6_4:+52326526 | Msa0990530:CDS |
| GAAATTTACAACAAAATGCT+GGG | 0.536623 | 6_4:+52325075 | Msa0990530:CDS |
| CTGATGTTTCTGTTAAGAAG+AGG | 0.551021 | 6_4:+52324725 | Msa0990530:CDS |
| ATTAACTTCATTCTTCAGCA+AGG | 0.551113 | 6_4:-52324908 | None:intergenic |
| TGCTCAGCACAAGACAGCTA+TGG | 0.554357 | 6_4:+52326925 | Msa0990530:CDS |
| GAAGGAGCTCAAGTTGAAAG+AGG | 0.561445 | 6_4:+52325776 | Msa0990530:CDS |
| AATGGAACTAAAGTCAAAAG+AGG | 0.561945 | 6_4:+52325524 | Msa0990530:CDS |
| TGATGTTTCTGTTAAGAAGA+GGG | 0.562050 | 6_4:+52324726 | Msa0990530:CDS |
| GATCAAGAAATCGCTAGTCT+GGG | 0.562784 | 6_4:+52328689 | Msa0990530:CDS |
| CTGAAATATTAGAGTCCGAA+AGG | 0.564325 | 6_4:+52325220 | Msa0990530:CDS |
| TCAAGAGCGAAGCAGATGAA+AGG | 0.564494 | 6_4:+52325411 | Msa0990530:CDS |
| GCAATGAAAATATTAATTAG+CGG | 0.566234 | 6_4:+52325192 | Msa0990530:CDS |
| TCAGTTCAAAGTAAAGGAGA+AGG | 0.569881 | 6_4:+52325758 | Msa0990530:CDS |
| AAGAGAATCAGTGCAAAGAA+CGG | 0.574336 | 6_4:+52325331 | Msa0990530:CDS |
| CGAAGGAGCCTGAGTTAACA+GGG | 0.575767 | 6_4:+52325859 | Msa0990530:CDS |
| TGCAAGACAAGGAAAGTACA+TGG | 0.578415 | 6_4:-52328908 | None:intergenic |
| CATCCCATTCAGATGTGATG+AGG | 0.582634 | 6_4:+52324596 | Msa0990530:CDS |
| TTTGTGTTGGTGATGATGAT+GGG | 0.585452 | 6_4:+52324533 | Msa0990530:CDS |
| GGTGGAGGAACTTGAGTCGA+AGG | 0.591983 | 6_4:+52325353 | Msa0990530:CDS |
| GCTGGGAAAAGTTGAAAGCA+AGG | 0.594654 | 6_4:+52325092 | Msa0990530:CDS |
| CGAATTTGGCGGACAACCGA+AGG | 0.596432 | 6_4:+52325842 | Msa0990530:CDS |
| CAAAACTTCGCATTCATCGA+AGG | 0.599044 | 6_4:-52326885 | None:intergenic |
| ACAGTTTGAGTCAATGAAGA+GGG | 0.599438 | 6_4:+52325443 | Msa0990530:CDS |
| TCAGTGCAAAGAACGGGTGG+AGG | 0.600890 | 6_4:+52325338 | Msa0990530:CDS |
| GTTCCGCGCACAAACATGGT+TGG | 0.601664 | 6_4:+52329088 | Msa0990530:three_prime_UTR |
| GATTGTTCCGCGCACAAACA+TGG | 0.607087 | 6_4:+52329084 | Msa0990530:three_prime_UTR |
| AGACAACAGCCTAGAATCTG+AGG | 0.608679 | 6_4:+52328733 | Msa0990530:CDS |
| AAGCAAGGAAGAAGAACTCA+AGG | 0.609312 | 6_4:+52325107 | Msa0990530:CDS |
| ATCCCATTCAGATGTGATGA+GGG | 0.610719 | 6_4:+52324597 | Msa0990530:CDS |
| GAGGGAACCTGTTTCTTGTG+AGG | 0.612930 | 6_4:+52324615 | Msa0990530:CDS |
| GGTACTCCACTGTGTAAGAA+GGG | 0.614863 | 6_4:+52326659 | Msa0990530:CDS |
| AACAGTTTGAGTCAATGAAG+AGG | 0.615655 | 6_4:+52325442 | Msa0990530:CDS |
| AAAATTGGAAGGCCGAGTGA+AGG | 0.617952 | 6_4:+52325590 | Msa0990530:CDS |
| ACGATAAGCAATTTGAAGAA+CGG | 0.619335 | 6_4:+52325709 | Msa0990530:CDS |
| ATATGCAGTTGCATCTCACA+TGG | 0.620403 | 6_4:+52326481 | Msa0990530:intron |
| TCAAAGCTGAACGAATTTGG+CGG | 0.620958 | 6_4:+52325831 | Msa0990530:CDS |
| GGAGAATATCTTGGTGACAC+AGG | 0.624988 | 6_4:-52324670 | None:intergenic |
| ATCTGAGGATCTGCTTCGCG+AGG | 0.629635 | 6_4:+52328748 | Msa0990530:CDS |
| TTGTTAAATATCTTATCAGG+AGG | 0.629954 | 6_4:+52328402 | Msa0990530:CDS |
| ATGTCACCACATTATGATCA+CGG | 0.630116 | 6_4:+52324829 | Msa0990530:CDS |
| GTTCTTCTAACAAATAGATG+TGG | 0.633704 | 6_4:-52326709 | None:intergenic |
| GAATCAGTGCAAAGAACGGG+TGG | 0.644245 | 6_4:+52325335 | Msa0990530:CDS |
| ATAAGCAATTTGAAGAACGG+TGG | 0.646820 | 6_4:+52325712 | Msa0990530:CDS |
| AATCAACTATAGGAACTGGA+AGG | 0.646934 | 6_4:-52324475 | None:intergenic |
| TCTTCGCCGTGATCATAATG+TGG | 0.651961 | 6_4:-52324835 | None:intergenic |
| CATGTTCCCAAACTTGAAGT+CGG | 0.652127 | 6_4:-52324691 | None:intergenic |
| TAAAGGGCTCAATTCATGTG+AGG | 0.672504 | 6_4:+52324567 | Msa0990530:CDS |
| TTGAAAGCAGAAGAACTCGA+AGG | 0.687468 | 6_4:+52325621 | Msa0990530:CDS |
| TCTTACACAGTGGAGTACCG+GGG | 0.690858 | 6_4:-52326655 | None:intergenic |
| AATCACAAAACTCATGAGCG+CGG | 0.696796 | 6_4:-52329065 | None:intergenic |
| GTACCAACCATGTTTGTGCG+CGG | 0.700406 | 6_4:-52329091 | None:intergenic |
| TTGGAAATAATACAGAACCC+CGG | 0.701523 | 6_4:+52326638 | Msa0990530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTAAAATTATTTGTCTT+TGG | - | chr6_4:52328137-52328156 | None:intergenic | 10.0% |
| !! | ATATGAAAGAATTATACTAA+TGG | - | chr6_4:52326361-52326380 | None:intergenic | 15.0% |
| !!! | TATGTTAATTTAGAATGTTT+TGG | + | chr6_4:52326988-52327007 | Msa0990530:intron | 15.0% |
| !!! | TTTACTCATTTTATCATTTT+TGG | + | chr6_4:52327187-52327206 | Msa0990530:intron | 15.0% |
| !! | ATAAAACCACATTAATTATT+TGG | + | chr6_4:52327359-52327378 | Msa0990530:intron | 15.0% |
| !!! | TTAATTATTTGGATACATTT+TGG | + | chr6_4:52327370-52327389 | Msa0990530:intron | 15.0% |
| !!! | TATTTTCTTATTTACATCAA+AGG | + | chr6_4:52327399-52327418 | Msa0990530:intron | 15.0% |
| !!! | ATTTTGTTAAATATCTTATC+AGG | + | chr6_4:52328399-52328418 | Msa0990530:CDS | 15.0% |
| !!! | ATTTTTTGCTTTCAATTTTA+TGG | + | chr6_4:52328930-52328949 | Msa0990530:three_prime_UTR | 15.0% |
| !! | AATTGTTTAACAATTGCAAA+AGG | + | chr6_4:52324941-52324960 | Msa0990530:CDS | 20.0% |
| !! | GCAATGAAAATATTAATTAG+CGG | + | chr6_4:52325192-52325211 | Msa0990530:CDS | 20.0% |
| !! | AGAATTAAAAGAGGAAAAAT+TGG | + | chr6_4:52325575-52325594 | Msa0990530:CDS | 20.0% |
| !! | ATTAAAAAAACATATTGACG+AGG | + | chr6_4:52325896-52325915 | Msa0990530:CDS | 20.0% |
| !! | GAGATTCATAAAATGTTTAA+GGG | - | chr6_4:52326057-52326076 | None:intergenic | 20.0% |
| !! | AGAGATTCATAAAATGTTTA+AGG | - | chr6_4:52326058-52326077 | None:intergenic | 20.0% |
| !!! | TGTCTCAATTTATTTAGTTT+TGG | + | chr6_4:52326306-52326325 | Msa0990530:intron | 20.0% |
| !! | TTTCCTAGATTGAAATTTAT+GGG | - | chr6_4:52326388-52326407 | None:intergenic | 20.0% |
| !! | AGAGAATACTAAAAATTCTT+CGG | + | chr6_4:52326814-52326833 | Msa0990530:CDS | 20.0% |
| !! | TTAATATCTTATATGCAGTT+AGG | + | chr6_4:52327084-52327103 | Msa0990530:intron | 20.0% |
| !! | TGTAAATAATAAGATACTAC+TGG | + | chr6_4:52327263-52327282 | Msa0990530:intron | 20.0% |
| !! | ATGTATCCAAATAATTAATG+TGG | - | chr6_4:52327368-52327387 | None:intergenic | 20.0% |
| !!! | GATTTTTTTTGGGTTATATT+TGG | - | chr6_4:52327722-52327741 | None:intergenic | 20.0% |
| !!! | TCATTTCAGAGATTTTTTTT+GGG | - | chr6_4:52327732-52327751 | None:intergenic | 20.0% |
| !!! | TTCATTTCAGAGATTTTTTT+TGG | - | chr6_4:52327733-52327752 | None:intergenic | 20.0% |
| !!! | TTTTGAGAAAATTGAAATCT+TGG | + | chr6_4:52328250-52328269 | Msa0990530:intron | 20.0% |
| !!! | ATCAATTAATTGATTCTTGT+CGG | - | chr6_4:52328474-52328493 | None:intergenic | 20.0% |
| ! | TTCCTATAGTTGATTAATGA+TGG | + | chr6_4:52324483-52324502 | Msa0990530:exon | 25.0% |
| ! | ATCCATCATTAATCAACTAT+AGG | - | chr6_4:52324488-52324507 | None:intergenic | 25.0% |
| !!! | TTGATTAATGATGGATTTTG+AGG | + | chr6_4:52324492-52324511 | Msa0990530:exon | 25.0% |
| ! | ATGGGAAGTTAAATGTTAAA+GGG | + | chr6_4:52324551-52324570 | Msa0990530:CDS | 25.0% |
| ! | TTTCTTAACAGAAATGTTCA+AGG | - | chr6_4:52324803-52324822 | None:intergenic | 25.0% |
| ! | TTCTTCAATATCTCTCTTTA+TGG | - | chr6_4:52324998-52325017 | None:intergenic | 25.0% |
| ! | TGAAATTTACAACAAAATGC+TGG | + | chr6_4:52325074-52325093 | Msa0990530:CDS | 25.0% |
| ! | GAAATTTACAACAAAATGCT+GGG | + | chr6_4:52325075-52325094 | Msa0990530:CDS | 25.0% |
| !! | ATTACATTCAGCAACTTTTT+GGG | - | chr6_4:52325139-52325158 | None:intergenic | 25.0% |
| ! | GGAACTTGAAAATCATATAA+AGG | + | chr6_4:52325464-52325483 | Msa0990530:CDS | 25.0% |
| !! | TCAAAAAATAAGCAAGTTGA+AGG | + | chr6_4:52325495-52325514 | Msa0990530:CDS | 25.0% |
| !! | TTAATTCTAACTCCTTTTTC+TGG | - | chr6_4:52325563-52325582 | None:intergenic | 25.0% |
| ! | AAAGGAGTTAGAATTAAAAG+AGG | + | chr6_4:52325566-52325585 | Msa0990530:CDS | 25.0% |
| ! | TTAAAAGAGGAAAAATTGGA+AGG | + | chr6_4:52325579-52325598 | Msa0990530:CDS | 25.0% |
| !! | TTGATTTGAAATACTCAACT+TGG | - | chr6_4:52325689-52325708 | None:intergenic | 25.0% |
| ! | TTACACTATTTGCATATACT+TGG | - | chr6_4:52326172-52326191 | None:intergenic | 25.0% |
| ! | CTATAAATAGTTGCACAAAT+AGG | - | chr6_4:52326254-52326273 | None:intergenic | 25.0% |
| ! | CTTTCCTAGATTGAAATTTA+TGG | - | chr6_4:52326389-52326408 | None:intergenic | 25.0% |
| ! | CATAAATTTCAATCTAGGAA+AGG | + | chr6_4:52326387-52326406 | Msa0990530:intron | 25.0% |
| ! | GATCAATTAAGTCATACAAT+TGG | + | chr6_4:52326506-52326525 | Msa0990530:CDS | 25.0% |
| ! | TACCAAAGCATAAAGATAAA+AGG | - | chr6_4:52327032-52327051 | None:intergenic | 25.0% |
| !!! | TTTATCATTTTTGGTAGATG+TGG | + | chr6_4:52327196-52327215 | Msa0990530:intron | 25.0% |
| !!! | TTATCATTTTTGGTAGATGT+GGG | + | chr6_4:52327197-52327216 | Msa0990530:intron | 25.0% |
| !! | TGCTTTTCTCAAATAATTAG+CGG | - | chr6_4:52327476-52327495 | None:intergenic | 25.0% |
| ! | TAAAAAATGGAATCAGTTCA+AGG | + | chr6_4:52328068-52328087 | Msa0990530:intron | 25.0% |
| ! | ATGATTCGTTTCAAGAAAAT+AGG | + | chr6_4:52328091-52328110 | Msa0990530:intron | 25.0% |
| ! | ATTAGAAGTAAAATCTATGC+AGG | + | chr6_4:52328154-52328173 | Msa0990530:intron | 25.0% |
| !!! | AAGATTAAGATTTTAGCTGT+TGG | + | chr6_4:52328194-52328213 | Msa0990530:intron | 25.0% |
| ! | GATATTTAACAAAATCTGCA+CGG | - | chr6_4:52328394-52328413 | None:intergenic | 25.0% |
| ! | TTGTTAAATATCTTATCAGG+AGG | + | chr6_4:52328402-52328421 | Msa0990530:CDS | 25.0% |
| ! | AACTAACTCAATTGAAATCA+AGG | + | chr6_4:52328550-52328569 | Msa0990530:CDS | 25.0% |
| ! | AATGTAAAGAAATGTGGTAA+TGG | + | chr6_4:52328841-52328860 | Msa0990530:intron | 25.0% |
| !!! | ACCTATTTCTACTTTTGTTA+GGG | + | chr6_4:52328866-52328885 | Msa0990530:intron | 25.0% |
| CATTAATCAACTATAGGAAC+TGG | - | chr6_4:52324482-52324501 | None:intergenic | 30.0% | |
| GATGGGAAGTTAAATGTTAA+AGG | + | chr6_4:52324550-52324569 | Msa0990530:CDS | 30.0% | |
| ! | TGATGTTTCTGTTAAGAAGA+GGG | + | chr6_4:52324726-52324745 | Msa0990530:CDS | 30.0% |
| TTATCAAACAACCTCTTAAC+TGG | - | chr6_4:52324772-52324791 | None:intergenic | 30.0% | |
| ATTAACTTCATTCTTCAGCA+AGG | - | chr6_4:52324911-52324930 | None:intergenic | 30.0% | |
| GCTGAAGAATGAAGTTAATT+TGG | + | chr6_4:52324912-52324931 | Msa0990530:CDS | 30.0% | |
| ! | GATTACATTCAGCAACTTTT+TGG | - | chr6_4:52325140-52325159 | None:intergenic | 30.0% |
| AAAAGTTGCTGAATGTAATC+TGG | + | chr6_4:52325140-52325159 | Msa0990530:CDS | 30.0% | |
| AATGGAACTAAAGTCAAAAG+AGG | + | chr6_4:52325524-52325543 | Msa0990530:CDS | 30.0% | |
| CGAGTCAAAAAATAAGCATT+TGG | + | chr6_4:52325659-52325678 | Msa0990530:CDS | 30.0% | |
| ACGATAAGCAATTTGAAGAA+CGG | + | chr6_4:52325709-52325728 | Msa0990530:CDS | 30.0% | |
| AGAGAATCAGTTCAAAGTAA+AGG | + | chr6_4:52325752-52325771 | Msa0990530:CDS | 30.0% | |
| TATTGACGAGGAAAAAGAAT+CGG | + | chr6_4:52325908-52325927 | Msa0990530:CDS | 30.0% | |
| TTATAGTTAAACCTTTGCCA+TGG | - | chr6_4:52326109-52326128 | None:intergenic | 30.0% | |
| AATCTTCTGAGCTAAAATGT+AGG | + | chr6_4:52326190-52326209 | Msa0990530:intron | 30.0% | |
| CGTTAAATGAAGGTAACAAT+AGG | - | chr6_4:52326449-52326468 | None:intergenic | 30.0% | |
| ATTTCCAAAACAAGTCTAGA+TGG | - | chr6_4:52326626-52326645 | None:intergenic | 30.0% | |
| GTTCTTCTAACAAATAGATG+TGG | - | chr6_4:52326712-52326731 | None:intergenic | 30.0% | |
| ! | GGTTTTGCAAATAAAGTTTC+TGG | + | chr6_4:52326965-52326984 | Msa0990530:CDS | 30.0% |
| CAAAGCATAAAGATAAAAGG+AGG | - | chr6_4:52327029-52327048 | None:intergenic | 30.0% | |
| ! | CTCCTTTTATCTTTATGCTT+TGG | + | chr6_4:52327027-52327046 | Msa0990530:intron | 30.0% |
| TCTTATATGCAGTTAGGATA+AGG | + | chr6_4:52327090-52327109 | Msa0990530:intron | 30.0% | |
| ACAACTAAAAGATTGACAGT+TGG | + | chr6_4:52327326-52327345 | Msa0990530:intron | 30.0% | |
| AGATAGAAATTGTGACACTT+AGG | + | chr6_4:52327959-52327978 | Msa0990530:intron | 30.0% | |
| TGCTGAAGCAGTATAAAAAA+TGG | + | chr6_4:52328055-52328074 | Msa0990530:intron | 30.0% | |
| !!! | AATCTTGGTGTTAATGCTTT+TGG | + | chr6_4:52328265-52328284 | Msa0990530:intron | 30.0% |
| !!! | TTGAGTTAGTTTTCTCACAA+CGG | - | chr6_4:52328541-52328560 | None:intergenic | 30.0% |
| TAAGTTATGACTATCATGCA+GGG | - | chr6_4:52328635-52328654 | None:intergenic | 30.0% | |
| TTAAGTTATGACTATCATGC+AGG | - | chr6_4:52328636-52328655 | None:intergenic | 30.0% | |
| CTGCTTAATGTAAAGAAATG+TGG | + | chr6_4:52328835-52328854 | Msa0990530:intron | 30.0% | |
| !!! | CACCTATTTCTACTTTTGTT+AGG | + | chr6_4:52328865-52328884 | Msa0990530:intron | 30.0% |
| TTAGGGCTATATGTATTTCT+TGG | + | chr6_4:52328883-52328902 | Msa0990530:three_prime_UTR | 30.0% | |
| AAAGCAAAAAATGCAAGACA+AGG | - | chr6_4:52328922-52328941 | None:intergenic | 30.0% | |
| GAACTGGAAGGAAAAATCTT+GGG | - | chr6_4:52324466-52324485 | None:intergenic | 35.0% | |
| AATCAACTATAGGAACTGGA+AGG | - | chr6_4:52324478-52324497 | None:intergenic | 35.0% | |
| ! | GATAAGCGAAACTTTTGTGT+TGG | + | chr6_4:52324520-52324539 | Msa0990530:CDS | 35.0% |
| !!! | TTTTGTGTTGGTGATGATGA+TGG | + | chr6_4:52324532-52324551 | Msa0990530:CDS | 35.0% |
| !! | TTTGTGTTGGTGATGATGAT+GGG | + | chr6_4:52324533-52324552 | Msa0990530:CDS | 35.0% |
| ! | ATATTCTCCGACTTCAAGTT+TGG | + | chr6_4:52324684-52324703 | Msa0990530:CDS | 35.0% |
| ! | TATTCTCCGACTTCAAGTTT+GGG | + | chr6_4:52324685-52324704 | Msa0990530:CDS | 35.0% |
| CTCTTCTTAACAGAAACATC+AGG | - | chr6_4:52324727-52324746 | None:intergenic | 35.0% | |
| ! | CTGATGTTTCTGTTAAGAAG+AGG | + | chr6_4:52324725-52324744 | Msa0990530:CDS | 35.0% |
| TCATAATGTGGTGACATCTT+TGG | - | chr6_4:52324826-52324845 | None:intergenic | 35.0% | |
| ATGTCACCACATTATGATCA+CGG | + | chr6_4:52324829-52324848 | Msa0990530:CDS | 35.0% | |
| CTGAAATATTAGAGTCCGAA+AGG | + | chr6_4:52325220-52325239 | Msa0990530:CDS | 35.0% | |
| CTTTAGTAACTGCTTCCTTT+CGG | - | chr6_4:52325238-52325257 | None:intergenic | 35.0% | |
| AAGAGAATCAGTGCAAAGAA+CGG | + | chr6_4:52325331-52325350 | Msa0990530:CDS | 35.0% | |
| AACAGTTTGAGTCAATGAAG+AGG | + | chr6_4:52325442-52325461 | Msa0990530:CDS | 35.0% | |
| ACAGTTTGAGTCAATGAAGA+GGG | + | chr6_4:52325443-52325462 | Msa0990530:CDS | 35.0% | |
| ATAAGCAATTTGAAGAACGG+TGG | + | chr6_4:52325712-52325731 | Msa0990530:CDS | 35.0% | |
| TCAGTTCAAAGTAAAGGAGA+AGG | + | chr6_4:52325758-52325777 | Msa0990530:CDS | 35.0% | |
| GCAGATTGAAGTACAATTCA+AGG | + | chr6_4:52325800-52325819 | Msa0990530:CDS | 35.0% | |
| ATTGACGAGGAAAAAGAATC+GGG | + | chr6_4:52325909-52325928 | Msa0990530:CDS | 35.0% | |
| AACTCTTGCATTTCTATCCA+TGG | + | chr6_4:52326089-52326108 | Msa0990530:intron | 35.0% | |
| CCTAGATTGAAATTTATGGG+TGG | - | chr6_4:52326385-52326404 | None:intergenic | 35.0% | |
| CCACCCATAAATTTCAATCT+AGG | + | chr6_4:52326382-52326401 | Msa0990530:intron | 35.0% | |
| !! | ATCGAAGCATCGTTAAATGA+AGG | - | chr6_4:52326459-52326478 | None:intergenic | 35.0% |
| !! | AGATCCATCTAGACTTGTTT+TGG | + | chr6_4:52326619-52326638 | Msa0990530:CDS | 35.0% |
| TTGGAAATAATACAGAACCC+CGG | + | chr6_4:52326638-52326657 | Msa0990530:CDS | 35.0% | |
| AAAAATTCTTCGGCTGTTCT+TGG | + | chr6_4:52326824-52326843 | Msa0990530:CDS | 35.0% | |
| CTTCTGCTCTTGTCAATATA+TGG | + | chr6_4:52326851-52326870 | Msa0990530:CDS | 35.0% | |
| ! | TAGGATAAGGTTGCTTGTTA+TGG | + | chr6_4:52327103-52327122 | Msa0990530:intron | 35.0% |
| TCTCAAATAATTAGCGGTGT+CGG | - | chr6_4:52327470-52327489 | None:intergenic | 35.0% | |
| AATGTGATTCAGATATGCTC+TGG | - | chr6_4:52327643-52327662 | None:intergenic | 35.0% | |
| CGAGTTCAATGAAACATACT+AGG | - | chr6_4:52327666-52327685 | None:intergenic | 35.0% | |
| TTTAAATCTCCCAAGAGTCT+AGG | + | chr6_4:52327796-52327815 | Msa0990530:intron | 35.0% | |
| ATTCAGCTGTGCATATAACT+TGG | + | chr6_4:52328448-52328467 | Msa0990530:CDS | 35.0% | |
| TACAAATCTGTTTCGCATTC+TGG | - | chr6_4:52328514-52328533 | None:intergenic | 35.0% | |
| AAGTTATGACTATCATGCAG+GGG | - | chr6_4:52328634-52328653 | None:intergenic | 35.0% | |
| ATTACTATGAACTTGAGCTC+AGG | + | chr6_4:52328655-52328674 | Msa0990530:intron | 35.0% | |
| AAACGAGCATAAAGGCAAAT+AGG | + | chr6_4:52328796-52328815 | Msa0990530:CDS | 35.0% | |
| GCCCTAACAAAAGTAGAAAT+AGG | - | chr6_4:52328870-52328889 | None:intergenic | 35.0% | |
| !! | CTCATGAGCTTTGTTGTAAA+CGG | + | chr6_4:52329027-52329046 | Msa0990530:three_prime_UTR | 35.0% |
| GGAACTGGAAGGAAAAATCT+TGG | - | chr6_4:52324467-52324486 | None:intergenic | 40.0% | |
| TAAAGGGCTCAATTCATGTG+AGG | + | chr6_4:52324567-52324586 | Msa0990530:CDS | 40.0% | |
| ATCCCATTCAGATGTGATGA+GGG | + | chr6_4:52324597-52324616 | Msa0990530:CDS | 40.0% | |
| TTCCCTCATCACATCTGAAT+GGG | - | chr6_4:52324602-52324621 | None:intergenic | 40.0% | |
| TCAAAGTCCTCACAAGAAAC+AGG | - | chr6_4:52324625-52324644 | None:intergenic | 40.0% | |
| CTTGAAGTCGGAGAATATCT+TGG | - | chr6_4:52324682-52324701 | None:intergenic | 40.0% | |
| CATGTTCCCAAACTTGAAGT+CGG | - | chr6_4:52324694-52324713 | None:intergenic | 40.0% | |
| ATACTACACTGCCAGTTAAG+AGG | + | chr6_4:52324758-52324777 | Msa0990530:CDS | 40.0% | |
| AAGCAAGGAAGAAGAACTCA+AGG | + | chr6_4:52325107-52325126 | Msa0990530:CDS | 40.0% | |
| TGCATCAAGCTCTTTCTCTT+TGG | - | chr6_4:52325175-52325194 | None:intergenic | 40.0% | |
| CGAAAGGAAGCAGTTACTAA+AGG | + | chr6_4:52325236-52325255 | Msa0990530:CDS | 40.0% | |
| GCGACTTGAAGGTCATATTA+AGG | + | chr6_4:52325296-52325315 | Msa0990530:CDS | 40.0% | |
| AGAGAATCAGTGCAAAGAAC+GGG | + | chr6_4:52325332-52325351 | Msa0990530:CDS | 40.0% | |
| !! | TCGAAGGAGAAGTACTTAGA+AGG | + | chr6_4:52325369-52325388 | Msa0990530:CDS | 40.0% |
| TCAATTCATGCTCCTTCACT+CGG | - | chr6_4:52325605-52325624 | None:intergenic | 40.0% | |
| TTGAAAGCAGAAGAACTCGA+AGG | + | chr6_4:52325621-52325640 | Msa0990530:CDS | 40.0% | |
| GAGTCAAAGCTGAACGAATT+TGG | + | chr6_4:52325828-52325847 | Msa0990530:CDS | 40.0% | |
| TCAAAGCTGAACGAATTTGG+CGG | + | chr6_4:52325831-52325850 | Msa0990530:CDS | 40.0% | |
| TGCATTTCTATCCATGGCAA+AGG | + | chr6_4:52326095-52326114 | Msa0990530:intron | 40.0% | |
| !! | CATATCGTAGCAAGCATTGA+GGG | + | chr6_4:52326216-52326235 | Msa0990530:intron | 40.0% |
| !! | ATATCGTAGCAAGCATTGAG+GGG | + | chr6_4:52326217-52326236 | Msa0990530:intron | 40.0% |
| ATATGCAGTTGCATCTCACA+TGG | + | chr6_4:52326481-52326500 | Msa0990530:intron | 40.0% | |
| TGGTAGAACAAGTTTGCAGT+TGG | + | chr6_4:52326526-52326545 | Msa0990530:CDS | 40.0% | |
| ! | TTTTCTCCCTTCTTACACAG+TGG | - | chr6_4:52326668-52326687 | None:intergenic | 40.0% |
| CGTACACAAGGTTTGATACT+TGG | - | chr6_4:52326749-52326768 | None:intergenic | 40.0% | |
| !!! | AACGCTTTTTCTCGTACACA+AGG | - | chr6_4:52326761-52326780 | None:intergenic | 40.0% |
| GTTGAAGTTAGCACGTGATT+TGG | + | chr6_4:52326778-52326797 | Msa0990530:CDS | 40.0% | |
| CAAAACTTCGCATTCATCGA+AGG | - | chr6_4:52326888-52326907 | None:intergenic | 40.0% | |
| ! | CTTCGATGAATGCGAAGTTT+TGG | + | chr6_4:52326886-52326905 | Msa0990530:CDS | 40.0% |
| ! | ATGGAGCTGTTTGAGACTTT+CGG | + | chr6_4:52326944-52326963 | Msa0990530:CDS | 40.0% |
| !! | CATTAGCCCACTCTAAGATA+GGG | + | chr6_4:52327156-52327175 | Msa0990530:intron | 40.0% |
| TTGACACCCTATCTTAGAGT+GGG | - | chr6_4:52327165-52327184 | None:intergenic | 40.0% | |
| ATTGACACCCTATCTTAGAG+TGG | - | chr6_4:52327166-52327185 | None:intergenic | 40.0% | |
| ATGCTTCATAGTTCCTGTCT+AGG | - | chr6_4:52327428-52327447 | None:intergenic | 40.0% | |
| TAGACAGGAACTATGAAGCA+TGG | + | chr6_4:52327427-52327446 | Msa0990530:intron | 40.0% | |
| ATTATGTGTCAGTGACGTGT+CGG | + | chr6_4:52327510-52327529 | Msa0990530:intron | 40.0% | |
| ! | GCACCACACTTTTCTTACAT+CGG | + | chr6_4:52327538-52327557 | Msa0990530:intron | 40.0% |
| ! | CACCACACTTTTCTTACATC+GGG | + | chr6_4:52327539-52327558 | Msa0990530:intron | 40.0% |
| TATGAAGCACAGACAATCCT+CGG | - | chr6_4:52327576-52327595 | None:intergenic | 40.0% | |
| !! | CGCTTTCACTAACTTGTTCT+AGG | + | chr6_4:52327684-52327703 | Msa0990530:intron | 40.0% |
| ATGAACTTGAGCTCAGGATA+AGG | + | chr6_4:52328661-52328680 | Msa0990530:intron | 40.0% | |
| AGATCAAGAAATCGCTAGTC+TGG | + | chr6_4:52328688-52328707 | Msa0990530:CDS | 40.0% | |
| ! | GATCAAGAAATCGCTAGTCT+GGG | + | chr6_4:52328689-52328708 | Msa0990530:CDS | 40.0% |
| CATGAGCTAAACGAGCATAA+AGG | + | chr6_4:52328788-52328807 | Msa0990530:CDS | 40.0% | |
| ! | TGCAAGACAAGGAAAGTACA+TGG | - | chr6_4:52328911-52328930 | None:intergenic | 40.0% |
| AATCACAAAACTCATGAGCG+CGG | - | chr6_4:52329068-52329087 | None:intergenic | 40.0% | |
| CATCCCATTCAGATGTGATG+AGG | + | chr6_4:52324596-52324615 | Msa0990530:CDS | 45.0% | |
| GTTCCCTCATCACATCTGAA+TGG | - | chr6_4:52324603-52324622 | None:intergenic | 45.0% | |
| ! | GGAGAATATCTTGGTGACAC+AGG | - | chr6_4:52324673-52324692 | None:intergenic | 45.0% |
| TCTTCGCCGTGATCATAATG+TGG | - | chr6_4:52324838-52324857 | None:intergenic | 45.0% | |
| GCTGGGAAAAGTTGAAAGCA+AGG | + | chr6_4:52325092-52325111 | Msa0990530:CDS | 45.0% | |
| GCTCAAATGAAGCGACTTGA+AGG | + | chr6_4:52325285-52325304 | Msa0990530:CDS | 45.0% | |
| TCAAGAGCGAAGCAGATGAA+AGG | + | chr6_4:52325411-52325430 | Msa0990530:CDS | 45.0% | |
| ! | GCAAGTTGAAGGACGAGAAA+TGG | + | chr6_4:52325506-52325525 | Msa0990530:CDS | 45.0% |
| ! | TCAAAAGAGGTGCAGCTTGA+AGG | + | chr6_4:52325537-52325556 | Msa0990530:CDS | 45.0% |
| AAAATTGGAAGGCCGAGTGA+AGG | + | chr6_4:52325590-52325609 | Msa0990530:CDS | 45.0% | |
| AGAACTCGAAGGTCGAGTTA+AGG | + | chr6_4:52325632-52325651 | Msa0990530:CDS | 45.0% | |
| !! | GAAGGAGCTCAAGTTGAAAG+AGG | + | chr6_4:52325776-52325795 | Msa0990530:CDS | 45.0% |
| GTGTGTTTCCCTGTTAACTC+AGG | - | chr6_4:52325870-52325889 | None:intergenic | 45.0% | |
| ! | CCTCAATGCTTGCTACGATA+TGG | - | chr6_4:52326218-52326237 | None:intergenic | 45.0% |
| ! | CCATATCGTAGCAAGCATTG+AGG | + | chr6_4:52326215-52326234 | Msa0990530:intron | 45.0% |
| ! | TTCTTACACAGTGGAGTACC+GGG | - | chr6_4:52326659-52326678 | None:intergenic | 45.0% |
| CTTCTTACACAGTGGAGTAC+CGG | - | chr6_4:52326660-52326679 | None:intergenic | 45.0% | |
| GGTACTCCACTGTGTAAGAA+GGG | + | chr6_4:52326659-52326678 | Msa0990530:CDS | 45.0% | |
| !! | GCATTAGCCCACTCTAAGAT+AGG | + | chr6_4:52327155-52327174 | Msa0990530:intron | 45.0% |
| CTTCATAGTTCCTGTCTAGG+AGG | - | chr6_4:52327425-52327444 | None:intergenic | 45.0% | |
| ATGAAGCATGGATACGAACG+CGG | + | chr6_4:52327439-52327458 | Msa0990530:intron | 45.0% | |
| GTCCCGATGTAAGAAAAGTG+TGG | - | chr6_4:52327544-52327563 | None:intergenic | 45.0% | |
| GAGGATTGTCTGTGCTTCAT+AGG | + | chr6_4:52327575-52327594 | Msa0990530:intron | 45.0% | |
| TGCAGAAGTCCTAGACTCTT+GGG | - | chr6_4:52327808-52327827 | None:intergenic | 45.0% | |
| ! | GCAGAGCTAAGTGATGATGA+AGG | + | chr6_4:52327841-52327860 | Msa0990530:intron | 45.0% |
| !!! | ACCTACTGCTGCCATTTTCT+TGG | + | chr6_4:52328001-52328020 | Msa0990530:intron | 45.0% |
| TCCAAGAAAATGGCAGCAGT+AGG | - | chr6_4:52328005-52328024 | None:intergenic | 45.0% | |
| !! | GCCATTTTCTTGGACATCAG+TGG | + | chr6_4:52328011-52328030 | Msa0990530:intron | 45.0% |
| GCCACTGATGTCCAAGAAAA+TGG | - | chr6_4:52328015-52328034 | None:intergenic | 45.0% | |
| AGACAACAGCCTAGAATCTG+AGG | + | chr6_4:52328733-52328752 | Msa0990530:CDS | 45.0% | |
| GAAGCAGATCCTCAGATTCT+AGG | - | chr6_4:52328745-52328764 | None:intergenic | 45.0% | |
| ! | GAGGGAACCTGTTTCTTGTG+AGG | + | chr6_4:52324615-52324634 | Msa0990530:CDS | 50.0% |
| GAATCAGTGCAAAGAACGGG+TGG | + | chr6_4:52325335-52325354 | Msa0990530:CDS | 50.0% | |
| GCAGCTTGAAGGCCAGAAAA+AGG | + | chr6_4:52325548-52325567 | Msa0990530:CDS | 50.0% | |
| CCTGTTAACTCAGGCTCCTT+CGG | - | chr6_4:52325861-52325880 | None:intergenic | 50.0% | |
| CGAAGGAGCCTGAGTTAACA+GGG | + | chr6_4:52325859-52325878 | Msa0990530:CDS | 50.0% | |
| !! | TCTTACACAGTGGAGTACCG+GGG | - | chr6_4:52326658-52326677 | None:intergenic | 50.0% |
| CGGTACTCCACTGTGTAAGA+AGG | + | chr6_4:52326658-52326677 | Msa0990530:CDS | 50.0% | |
| TGCTCAGCACAAGACAGCTA+TGG | + | chr6_4:52326925-52326944 | Msa0990530:CDS | 50.0% | |
| ACATCAAAGGCCTCCTAGAC+AGG | + | chr6_4:52327412-52327431 | Msa0990530:intron | 50.0% | |
| GTGCAGAAGTCCTAGACTCT+TGG | - | chr6_4:52327809-52327828 | None:intergenic | 50.0% | |
| ! | AAGTGAGCGTTGTCGCAAAG+AGG | - | chr6_4:52327899-52327918 | None:intergenic | 50.0% |
| ! | GCAGGGGTACATGTCTGAAA+TGG | - | chr6_4:52328618-52328637 | None:intergenic | 50.0% |
| GATTGTTCCGCGCACAAACA+TGG | + | chr6_4:52329084-52329103 | Msa0990530:three_prime_UTR | 50.0% | |
| TCAGTGCAAAGAACGGGTGG+AGG | + | chr6_4:52325338-52325357 | Msa0990530:CDS | 55.0% | |
| GGTGGAGGAACTTGAGTCGA+AGG | + | chr6_4:52325353-52325372 | Msa0990530:CDS | 55.0% | |
| ! | CGAATTTGGCGGACAACCGA+AGG | + | chr6_4:52325842-52325861 | Msa0990530:CDS | 55.0% |
| CCGAAGGAGCCTGAGTTAAC+AGG | + | chr6_4:52325858-52325877 | Msa0990530:CDS | 55.0% | |
| ! | TGTCAGTGACGTGTCGGTGT+CGG | + | chr6_4:52327516-52327535 | Msa0990530:intron | 55.0% |
| ATCGGGACACGTCTAATCCG+AGG | + | chr6_4:52327556-52327575 | Msa0990530:intron | 55.0% | |
| TGTGCATCTCCAGCGAACAG+CGG | - | chr6_4:52327923-52327942 | None:intergenic | 55.0% | |
| ATCTGAGGATCTGCTTCGCG+AGG | + | chr6_4:52328748-52328767 | Msa0990530:CDS | 55.0% | |
| GCTCACTTGCCGCTGTTCGC+TGG | + | chr6_4:52327911-52327930 | Msa0990530:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 52324418 | 52329109 | 52324418 | ID=Msa0990530;Name=Msa0990530 |
| chr6_4 | mRNA | 52324418 | 52329109 | 52324418 | ID=Msa0990530-mRNA-1;Parent=Msa0990530;Name=Msa0990530-mRNA-1;_AED=0.06;_eAED=0.06;_QI=58|1|1|1|0.6|0.33|6|253|747 |
| chr6_4 | exon | 52324418 | 52324444 | 52324418 | ID=Msa0990530-mRNA-1:exon:10969;Parent=Msa0990530-mRNA-1 |
| chr6_4 | exon | 52324468 | 52325930 | 52324468 | ID=Msa0990530-mRNA-1:exon:10970;Parent=Msa0990530-mRNA-1 |
| chr6_4 | exon | 52326489 | 52326986 | 52326489 | ID=Msa0990530-mRNA-1:exon:10971;Parent=Msa0990530-mRNA-1 |
| chr6_4 | exon | 52328399 | 52328571 | 52328399 | ID=Msa0990530-mRNA-1:exon:10972;Parent=Msa0990530-mRNA-1 |
| chr6_4 | exon | 52328677 | 52328834 | 52328677 | ID=Msa0990530-mRNA-1:exon:10973;Parent=Msa0990530-mRNA-1 |
| chr6_4 | exon | 52328874 | 52329109 | 52328874 | ID=Msa0990530-mRNA-1:exon:10974;Parent=Msa0990530-mRNA-1 |
| chr6_4 | five_prime_UTR | 52324418 | 52324444 | 52324418 | ID=Msa0990530-mRNA-1:five_prime_utr;Parent=Msa0990530-mRNA-1 |
| chr6_4 | five_prime_UTR | 52324468 | 52324498 | 52324468 | ID=Msa0990530-mRNA-1:five_prime_utr;Parent=Msa0990530-mRNA-1 |
| chr6_4 | CDS | 52324499 | 52325930 | 52324499 | ID=Msa0990530-mRNA-1:cds;Parent=Msa0990530-mRNA-1 |
| chr6_4 | CDS | 52326489 | 52326986 | 52326489 | ID=Msa0990530-mRNA-1:cds;Parent=Msa0990530-mRNA-1 |
| chr6_4 | CDS | 52328399 | 52328571 | 52328399 | ID=Msa0990530-mRNA-1:cds;Parent=Msa0990530-mRNA-1 |
| chr6_4 | CDS | 52328677 | 52328817 | 52328677 | ID=Msa0990530-mRNA-1:cds;Parent=Msa0990530-mRNA-1 |
| chr6_4 | three_prime_UTR | 52328818 | 52328834 | 52328818 | ID=Msa0990530-mRNA-1:three_prime_utr;Parent=Msa0990530-mRNA-1 |
| chr6_4 | three_prime_UTR | 52328874 | 52329109 | 52328874 | ID=Msa0990530-mRNA-1:three_prime_utr;Parent=Msa0990530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
