Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0890310 | XP_013452099.1 | 88.542 | 768 | 81 | 1 | 1 | 761 | 1 | 768 | 0.0 | 1295 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0890310 | A0A072U8Z6 | 88.542 | 768 | 81 | 1 | 1 | 761 | 1 | 768 | 0.0 | 1295 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0669410 | Msa0890310 | 0.800891 | 1.164933e-48 | -8.615850e-47 |
| Msa0701010 | Msa0890310 | 0.820419 | 6.928545e-53 | -8.615850e-47 |
| Msa0756460 | Msa0890310 | 0.818360 | 2.041015e-52 | -8.615850e-47 |
| Msa0767760 | Msa0890310 | 0.806813 | 6.853932e-50 | -8.615850e-47 |
| Msa0768290 | Msa0890310 | 0.852941 | 3.317627e-61 | -8.615850e-47 |
| Msa0768370 | Msa0890310 | 0.821040 | 4.987994e-53 | -8.615850e-47 |
| Msa0824590 | Msa0890310 | 0.809469 | 1.863522e-50 | -8.615850e-47 |
| Msa0424320 | Msa0890310 | 0.813710 | 2.230144e-51 | -8.615850e-47 |
| Msa0471550 | Msa0890310 | 0.800591 | 1.341184e-48 | -8.615850e-47 |
| Msa0471580 | Msa0890310 | 0.800297 | 1.539457e-48 | -8.615850e-47 |
| Msa0240420 | Msa0890310 | 0.827429 | 1.572125e-54 | -8.615850e-47 |
| Msa0315200 | Msa0890310 | 0.802824 | 4.671184e-49 | -8.615850e-47 |
| Msa0523940 | Msa0890310 | 0.819450 | 1.154168e-52 | -8.615850e-47 |
| Msa0844410 | Msa0890310 | 0.812667 | 3.778818e-51 | -8.615850e-47 |
| Msa0844470 | Msa0890310 | 0.818972 | 1.483169e-52 | -8.615850e-47 |
| Msa0844490 | Msa0890310 | 0.831563 | 1.554974e-55 | -8.615850e-47 |
| Msa0864070 | Msa0890310 | 0.818325 | 2.078962e-52 | -8.615850e-47 |
| Msa0877250 | Msa0890310 | 0.822290 | 2.564179e-53 | -8.615850e-47 |
| Msa0890300 | Msa0890310 | 0.805714 | 1.168396e-49 | -8.615850e-47 |
| Msa0890310 | Msa0899430 | 0.821235 | 4.498124e-53 | -8.615850e-47 |
| Msa0890310 | Msa0899450 | 0.818128 | 2.304494e-52 | -8.615850e-47 |
| Msa0890310 | Msa0925190 | 0.867193 | 1.639520e-65 | -8.615850e-47 |
| Msa0890310 | Msa0927380 | 0.803205 | 3.894969e-49 | -8.615850e-47 |
| Msa0890310 | Msa0936300 | 0.813736 | 2.200528e-51 | -8.615850e-47 |
| Msa0890310 | Msa0953120 | 0.829019 | 6.506611e-55 | -8.615850e-47 |
| Msa0890310 | Msa0955280 | 0.873843 | 1.074074e-67 | -8.615850e-47 |
| Msa0890310 | Msa0958550 | 0.823240 | 1.541192e-53 | -8.615850e-47 |
| Msa0890310 | Msa0964900 | 0.816508 | 5.334335e-52 | -8.615850e-47 |
| Msa0890310 | Msa0966750 | 0.828228 | 1.010108e-54 | -8.615850e-47 |
| Msa0890310 | Msa0967180 | 0.802012 | 6.864629e-49 | -8.615850e-47 |
| Msa0890310 | Msa0973100 | 0.802505 | 5.434291e-49 | -8.615850e-47 |
| Msa0890310 | Msa0974080 | 0.807674 | 4.503610e-50 | -8.615850e-47 |
| Msa0890310 | Msa0990530 | 0.901704 | 2.047698e-78 | -8.615850e-47 |
| Msa0890310 | Msa0991830 | 0.808145 | 3.576548e-50 | -8.615850e-47 |
| Msa0890310 | Msa1002360 | 0.802396 | 5.723352e-49 | -8.615850e-47 |
| Msa0890310 | Msa1121480 | 0.807609 | 4.650299e-50 | -8.615850e-47 |
| Msa0890310 | Msa1121490 | 0.845275 | 4.494229e-59 | -8.615850e-47 |
| Msa0890310 | Msa1137570 | 0.805439 | 1.334048e-49 | -8.615850e-47 |
| Msa0890310 | Msa1259390 | 0.812412 | 4.294335e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0890310 | MtrunA17_Chr6g0471251 | 88.542 | 768 | 81 | 1 | 1 | 761 | 1 | 768 | 0.0 | 1295 |
| Msa0890310 | MtrunA17_Chr2g0325661 | 63.830 | 893 | 174 | 10 | 2 | 761 | 1 | 877 | 0.0 | 981 |
| Msa0890310 | MtrunA17_Chr2g0325351 | 54.386 | 741 | 235 | 13 | 55 | 760 | 16 | 688 | 0.0 | 624 |
| Msa0890310 | MtrunA17_Chr2g0325621 | 52.321 | 711 | 272 | 10 | 55 | 761 | 14 | 661 | 0.0 | 553 |
| Msa0890310 | MtrunA17_Chr2g0325811 | 44.535 | 860 | 345 | 18 | 2 | 759 | 1 | 830 | 0.0 | 552 |
| Msa0890310 | MtrunA17_Chr2g0325711 | 45.157 | 795 | 324 | 13 | 57 | 741 | 26 | 818 | 0.0 | 543 |
| Msa0890310 | MtrunA17_Chr2g0325611 | 57.721 | 544 | 186 | 4 | 217 | 760 | 91 | 590 | 1.61e-178 | 524 |
| Msa0890310 | MtrunA17_Chr2g0325611 | 29.793 | 386 | 175 | 15 | 46 | 415 | 10 | 315 | 8.56e-16 | 81.3 |
| Msa0890310 | MtrunA17_Chr2g0325361 | 49.268 | 615 | 238 | 4 | 195 | 760 | 488 | 1077 | 5.76e-153 | 473 |
| Msa0890310 | MtrunA17_Chr2g0325361 | 37.918 | 538 | 227 | 11 | 47 | 496 | 2 | 520 | 1.27e-64 | 233 |
| Msa0890310 | MtrunA17_Chr2g0280141 | 40.936 | 833 | 323 | 18 | 57 | 760 | 25 | 817 | 4.55e-152 | 463 |
| Msa0890310 | MtrunA17_Chr2g0325761 | 51.870 | 615 | 136 | 15 | 2 | 480 | 1 | 591 | 8.01e-147 | 446 |
| Msa0890310 | MtrunA17_Chr2g0325761 | 62.626 | 99 | 36 | 1 | 657 | 755 | 591 | 688 | 8.22e-28 | 119 |
| Msa0890310 | MtrunA17_Chr2g0325321 | 44.026 | 770 | 258 | 13 | 50 | 660 | 6 | 761 | 1.73e-143 | 439 |
| Msa0890310 | MtrunA17_Chr2g0325701 | 44.678 | 667 | 273 | 10 | 5 | 657 | 5 | 589 | 2.03e-140 | 426 |
| Msa0890310 | MtrunA17_Chr5g0434761 | 71.321 | 265 | 76 | 0 | 496 | 760 | 1 | 265 | 9.73e-124 | 370 |
| Msa0890310 | MtrunA17_Chr2g0333341 | 40.680 | 735 | 288 | 16 | 2 | 702 | 1 | 621 | 2.72e-114 | 359 |
| Msa0890310 | MtrunA17_Chr5g0416271 | 41.723 | 592 | 228 | 10 | 74 | 665 | 14 | 488 | 1.20e-113 | 353 |
| Msa0890310 | MtrunA17_Chr2g0325231 | 49.471 | 473 | 217 | 7 | 203 | 670 | 427 | 882 | 6.11e-112 | 360 |
| Msa0890310 | MtrunA17_Chr2g0325231 | 37.049 | 610 | 223 | 18 | 1 | 494 | 1 | 565 | 2.38e-55 | 204 |
| Msa0890310 | MtrunA17_Chr2g0325631 | 70.301 | 266 | 79 | 0 | 496 | 761 | 1 | 266 | 1.15e-109 | 334 |
| Msa0890310 | MtrunA17_Chr2g0325721 | 43.345 | 556 | 180 | 11 | 2 | 479 | 1 | 499 | 2.55e-96 | 308 |
| Msa0890310 | MtrunA17_Chr2g0325861 | 42.730 | 564 | 259 | 11 | 162 | 679 | 296 | 841 | 6.12e-94 | 311 |
| Msa0890310 | MtrunA17_Chr2g0325861 | 40.468 | 598 | 193 | 13 | 1 | 470 | 1 | 563 | 1.15e-86 | 292 |
| Msa0890310 | MtrunA17_Chr2g0325221 | 39.439 | 606 | 241 | 15 | 2 | 490 | 1 | 597 | 1.43e-88 | 293 |
| Msa0890310 | MtrunA17_Chr2g0325221 | 60.784 | 102 | 39 | 1 | 658 | 759 | 599 | 699 | 2.81e-27 | 118 |
| Msa0890310 | MtrunA17_Chr2g0325651 | 43.430 | 449 | 158 | 10 | 1 | 417 | 1 | 385 | 5.49e-80 | 261 |
| Msa0890310 | MtrunA17_Chr2g0325651 | 39.109 | 202 | 109 | 3 | 302 | 496 | 193 | 387 | 1.42e-16 | 82.4 |
| Msa0890310 | MtrunA17_Chr2g0325261 | 45.722 | 374 | 129 | 7 | 1 | 369 | 1 | 305 | 4.97e-74 | 243 |
| Msa0890310 | MtrunA17_Chr2g0325341 | 45.722 | 374 | 129 | 7 | 1 | 369 | 1 | 305 | 4.97e-74 | 243 |
| Msa0890310 | MtrunA17_Chr5g0434741 | 45.646 | 379 | 119 | 9 | 2 | 368 | 1 | 304 | 3.24e-73 | 240 |
| Msa0890310 | MtrunA17_Chr2g0325281 | 36.765 | 612 | 206 | 14 | 52 | 496 | 4 | 601 | 1.49e-72 | 248 |
| Msa0890310 | MtrunA17_Chr2g0325291 | 61.194 | 201 | 78 | 0 | 515 | 715 | 6 | 206 | 6.41e-70 | 229 |
| Msa0890310 | MtrunA17_Chr2g0325691 | 41.897 | 506 | 223 | 12 | 5 | 472 | 5 | 477 | 1.12e-65 | 232 |
| Msa0890310 | MtrunA17_Chr2g0325691 | 37.310 | 394 | 202 | 8 | 131 | 496 | 353 | 729 | 2.27e-32 | 134 |
| Msa0890310 | MtrunA17_Chr2g0325691 | 38.603 | 272 | 160 | 3 | 202 | 470 | 323 | 590 | 1.87e-27 | 119 |
| Msa0890310 | MtrunA17_Chr2g0332961 | 42.773 | 339 | 128 | 8 | 331 | 630 | 42 | 353 | 1.64e-56 | 197 |
| Msa0890310 | MtrunA17_Chr2g0332961 | 35.510 | 245 | 130 | 5 | 87 | 323 | 2 | 226 | 2.19e-20 | 93.6 |
| Msa0890310 | MtrunA17_Chr2g0325241 | 42.308 | 312 | 163 | 3 | 280 | 582 | 121 | 424 | 9.16e-56 | 197 |
| Msa0890310 | MtrunA17_Chr2g0325331 | 67.097 | 155 | 51 | 0 | 496 | 650 | 1 | 155 | 2.36e-53 | 182 |
| Msa0890310 | MtrunA17_Chr2g0325781 | 39.410 | 373 | 154 | 8 | 2 | 374 | 1 | 301 | 7.70e-53 | 185 |
| Msa0890310 | MtrunA17_Chr2g0325781 | 34.359 | 195 | 96 | 5 | 244 | 431 | 133 | 302 | 3.31e-11 | 65.1 |
| Msa0890310 | MtrunA17_Chr2g0325741 | 41.716 | 338 | 142 | 10 | 1 | 322 | 1 | 299 | 9.20e-51 | 180 |
| Msa0890310 | MtrunA17_Chr2g0325771 | 60.819 | 171 | 57 | 2 | 489 | 657 | 10 | 172 | 6.52e-47 | 164 |
| Msa0890310 | MtrunA17_Chr2g0332951 | 44.130 | 247 | 93 | 5 | 415 | 657 | 2 | 207 | 7.01e-47 | 166 |
| Msa0890310 | MtrunA17_Chr2g0325311 | 70.588 | 119 | 33 | 2 | 644 | 760 | 1 | 119 | 1.33e-45 | 159 |
| Msa0890310 | MtrunA17_Chr8g0361651 | 36.554 | 383 | 202 | 7 | 377 | 752 | 51 | 399 | 3.45e-41 | 157 |
| Msa0890310 | MtrunA17_Chr7g0235901 | 38.889 | 360 | 140 | 9 | 106 | 436 | 1 | 309 | 3.01e-40 | 150 |
| Msa0890310 | MtrunA17_Chr7g0235901 | 32.819 | 259 | 134 | 5 | 241 | 460 | 48 | 305 | 1.38e-15 | 78.6 |
| Msa0890310 | MtrunA17_Chr3g0140591 | 53.333 | 165 | 76 | 1 | 493 | 657 | 6 | 169 | 1.12e-39 | 144 |
| Msa0890310 | MtrunA17_Chr2g0325271 | 66.346 | 104 | 35 | 0 | 657 | 760 | 40 | 143 | 2.81e-39 | 142 |
| Msa0890310 | MtrunA17_Chr4g0024061 | 28.927 | 643 | 325 | 15 | 200 | 755 | 51 | 648 | 9.13e-36 | 144 |
| Msa0890310 | MtrunA17_Chr2g0325641 | 39.498 | 319 | 148 | 7 | 208 | 491 | 3 | 311 | 3.24e-34 | 134 |
| Msa0890310 | MtrunA17_Chr2g0325641 | 31.760 | 233 | 148 | 2 | 203 | 424 | 75 | 307 | 5.66e-14 | 73.9 |
| Msa0890310 | MtrunA17_Chr5g0434751 | 49.315 | 219 | 97 | 2 | 280 | 491 | 65 | 276 | 3.12e-31 | 124 |
| Msa0890310 | MtrunA17_Chr5g0434751 | 43.478 | 184 | 104 | 0 | 286 | 469 | 1 | 184 | 5.69e-20 | 91.3 |
| Msa0890310 | MtrunA17_Chr5g0434751 | 43.275 | 171 | 83 | 2 | 314 | 470 | 1 | 171 | 8.97e-14 | 72.8 |
| Msa0890310 | MtrunA17_Chr5g0434751 | 31.301 | 246 | 137 | 4 | 199 | 412 | 15 | 260 | 1.86e-12 | 68.9 |
| Msa0890310 | MtrunA17_Chr2g0325751 | 48.026 | 152 | 67 | 2 | 358 | 504 | 9 | 153 | 1.74e-26 | 106 |
| Msa0890310 | MtrunA17_Chr2g0325751 | 43.363 | 113 | 57 | 1 | 300 | 412 | 7 | 112 | 2.18e-13 | 68.6 |
| Msa0890310 | MtrunA17_Chr2g0325751 | 35.811 | 148 | 85 | 2 | 282 | 429 | 3 | 140 | 3.91e-13 | 67.8 |
| Msa0890310 | MtrunA17_Chr7g0235921 | 71.134 | 97 | 27 | 1 | 574 | 670 | 1 | 96 | 3.05e-24 | 98.2 |
| Msa0890310 | MtrunA17_Chr2g0325201 | 44.516 | 155 | 78 | 2 | 222 | 368 | 74 | 228 | 3.02e-23 | 99.0 |
| Msa0890310 | MtrunA17_Chr4g0044221 | 47.287 | 129 | 62 | 3 | 466 | 592 | 167 | 291 | 7.97e-23 | 100 |
| Msa0890310 | MtrunA17_Chr4g0044221 | 33.514 | 185 | 83 | 2 | 157 | 307 | 12 | 190 | 9.51e-14 | 73.2 |
| Msa0890310 | MtrunA17_Chr2g0325801 | 61.538 | 65 | 25 | 0 | 131 | 195 | 62 | 126 | 3.39e-17 | 78.6 |
| Msa0890310 | MtrunA17_Chr4g0053711 | 27.692 | 260 | 155 | 7 | 526 | 759 | 189 | 441 | 1.60e-16 | 83.6 |
| Msa0890310 | MtrunA17_Chr3g0101121 | 30.526 | 190 | 126 | 3 | 567 | 755 | 172 | 356 | 3.06e-14 | 76.3 |
| Msa0890310 | MtrunA17_Chr2g0325791 | 43.966 | 116 | 61 | 1 | 347 | 458 | 41 | 156 | 9.75e-14 | 73.2 |
| Msa0890310 | MtrunA17_Chr2g0325791 | 38.356 | 146 | 79 | 2 | 285 | 430 | 22 | 156 | 1.09e-13 | 73.2 |
| Msa0890310 | MtrunA17_Chr2g0325791 | 36.364 | 143 | 88 | 1 | 329 | 471 | 44 | 183 | 2.10e-13 | 72.0 |
| Msa0890310 | MtrunA17_Chr2g0325791 | 38.017 | 121 | 75 | 0 | 293 | 413 | 47 | 167 | 1.50e-12 | 69.7 |
| Msa0890310 | MtrunA17_Chr3g0140581 | 33.548 | 155 | 72 | 2 | 136 | 259 | 1 | 155 | 1.15e-13 | 69.3 |
| Msa0890310 | MtrunA17_Chr2g0325211 | 37.356 | 174 | 73 | 2 | 281 | 454 | 2 | 139 | 3.53e-13 | 68.9 |
| Msa0890310 | MtrunA17_Chr8g0337661 | 22.777 | 461 | 308 | 13 | 335 | 760 | 4 | 451 | 9.99e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0890310 | AT5G27220.1 | 26.772 | 254 | 166 | 7 | 489 | 739 | 835 | 1071 | 2.82e-14 | 77.8 |
| Msa0890310 | AT5G27220.1 | 24.152 | 501 | 316 | 9 | 196 | 654 | 322 | 800 | 4.06e-13 | 73.9 |
| Msa0890310 | AT5G27220.3 | 26.772 | 254 | 166 | 7 | 489 | 739 | 835 | 1071 | 2.82e-14 | 77.8 |
| Msa0890310 | AT5G27220.3 | 24.152 | 501 | 316 | 9 | 196 | 654 | 322 | 800 | 4.06e-13 | 73.9 |
| Msa0890310 | AT5G27220.4 | 24.152 | 501 | 316 | 9 | 196 | 654 | 322 | 800 | 3.30e-13 | 73.9 |
| Msa0890310 | AT5G27220.2 | 24.152 | 501 | 316 | 9 | 196 | 654 | 322 | 800 | 3.30e-13 | 73.9 |
| Msa0890310 | AT5G48385.1 | 23.810 | 273 | 188 | 5 | 507 | 760 | 185 | 456 | 3.75e-11 | 67.0 |
Find 109 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCAATATCTCTCTTTA+TGG | 0.095605 | 6_1:-63247915 | None:intergenic |
| TACAAATCAGTTTCGCATTC+TGG | 0.162033 | 6_1:-63251021 | None:intergenic |
| TTAGAGCTATCTGTATTTCT+TGG | 0.202001 | 6_1:+63251431 | Msa0890310:intron |
| GATGGGAACTTAAATGTTAA+AGG | 0.230809 | 6_1:+63247470 | Msa0890310:CDS |
| TGCATCAAGCTCTTTCTCTT+TGG | 0.259439 | 6_1:-63248134 | None:intergenic |
| CTTCTGCTTCTGTCAATATA+TGG | 0.262163 | 6_1:+63249793 | Msa0890310:CDS |
| GCTGAAGAAAGAAGTTAATT+TGG | 0.275040 | 6_1:+63247832 | Msa0890310:CDS |
| AGATCAAGAAATCGCTAGTT+TGG | 0.283370 | 6_1:+63251198 | Msa0890310:CDS |
| AGATCCATCAAGACTTGTTT+TGG | 0.294687 | 6_1:+63249561 | Msa0890310:CDS |
| ATTTCCAAAACAAGTCTTGA+TGG | 0.297974 | 6_1:-63249565 | None:intergenic |
| TTTCGATGAATGCAAAGTTT+TGG | 0.307088 | 6_1:+63249828 | Msa0890310:CDS |
| GAAGCAGATCCTCAGATTCT+AGG | 0.308108 | 6_1:-63251252 | None:intergenic |
| TCTTCGCCGTGATCAGAATA+TGG | 0.331770 | 6_1:-63247755 | None:intergenic |
| CGTACACAAGGTTTGATACT+TGG | 0.333241 | 6_1:-63249688 | None:intergenic |
| ATATTCTCCGAGTTCAAGTT+TGG | 0.337823 | 6_1:+63247604 | Msa0890310:CDS |
| CTGAAGGAGCCTGAGTTAAC+AGG | 0.340566 | 6_1:+63248820 | Msa0890310:CDS |
| TCAGAATATGGTGACATCTT+TGG | 0.340955 | 6_1:-63247743 | None:intergenic |
| ATGGAGCTGTTTGAGACTTT+CGG | 0.343255 | 6_1:+63249886 | Msa0890310:CDS |
| GCAGCTTGAAGGCCAGAAAA+AGG | 0.352475 | 6_1:+63248510 | Msa0890310:CDS |
| GCGACTTGAAGGTCATATTA+AGG | 0.356638 | 6_1:+63248258 | Msa0890310:CDS |
| AAACGAACATAAAGGCAAAT+AGG | 0.360837 | 6_1:+63251306 | Msa0890310:CDS |
| TTATCATACAACCTCTTAAC+TGG | 0.364450 | 6_1:-63247689 | None:intergenic |
| GAGTCAAAGATGAACGGATT+TGG | 0.374474 | 6_1:+63248790 | Msa0890310:CDS |
| AAAAGTTGTTGAAAGTAATC+TGG | 0.394000 | 6_1:+63248102 | Msa0890310:CDS |
| GCAAGTTGAAGGACGAGAAA+TGG | 0.399180 | 6_1:+63248468 | Msa0890310:CDS |
| CTTTAGTAACTGCTTCCTTT+CGG | 0.405060 | 6_1:-63248197 | None:intergenic |
| GGAACTTGAAAATCATATAA+AGG | 0.412247 | 6_1:+63248426 | Msa0890310:CDS |
| GCTCAAATGAAGCGACTTGA+AGG | 0.418905 | 6_1:+63248247 | Msa0890310:CDS |
| TCGAAGGAGAAGTACTTAGA+AGG | 0.422549 | 6_1:+63248331 | Msa0890310:CDS |
| TGAAATTTACAACAAAATGC+TGG | 0.427440 | 6_1:+63247994 | Msa0890310:CDS |
| TCAAAGTCCTCACAAGAAAC+AGG | 0.437023 | 6_1:-63247542 | None:intergenic |
| GTTGAAGTTAGCACGTGATT+TGG | 0.438648 | 6_1:+63249720 | Msa0890310:CDS |
| TTCTTACACAGTTGAGTGCC+GGG | 0.440548 | 6_1:-63249598 | None:intergenic |
| GATCAAGAAATCGCTAGTTT+GGG | 0.440670 | 6_1:+63251199 | Msa0890310:CDS |
| GCAGATTGAAGTACAATTCA+AGG | 0.442680 | 6_1:+63248762 | Msa0890310:CDS |
| AGAGAGATATTGAAGAATGC+TGG | 0.449896 | 6_1:+63247921 | Msa0890310:CDS |
| TATTCTCCGAGTTCAAGTTT+GGG | 0.456682 | 6_1:+63247605 | Msa0890310:CDS |
| ATGGGAACTTAAATGTTAAA+GGG | 0.457071 | 6_1:+63247471 | Msa0890310:CDS |
| TCAAAAGAGGTGCAGCTTGA+AGG | 0.463639 | 6_1:+63248499 | Msa0890310:CDS |
| CTCTTCTTAACAGAAACATC+AGG | 0.468989 | 6_1:-63247644 | None:intergenic |
| AACTAACTCAATTGAAATCA+AGG | 0.469031 | 6_1:+63251060 | Msa0890310:CDS |
| AGAGAATCAGTGCAAAGAAC+GGG | 0.471141 | 6_1:+63248294 | Msa0890310:CDS |
| CTTCTTACACAGTTGAGTGC+CGG | 0.472128 | 6_1:-63249599 | None:intergenic |
| CATGAGCTAAACGAACATAA+AGG | 0.475448 | 6_1:+63251298 | Msa0890310:CDS |
| AGAGAATCAGTTCAAAGTAA+AGG | 0.475996 | 6_1:+63248714 | Msa0890310:CDS |
| TTTCTTAACAGAAATGTTCA+AGG | 0.479459 | 6_1:-63247720 | None:intergenic |
| AGAACTCGAAGGTCGAGTTA+AGG | 0.480507 | 6_1:+63248594 | Msa0890310:CDS |
| TCAATTCATGCTCCTTCACT+CGG | 0.482291 | 6_1:-63248564 | None:intergenic |
| ATTCAGTTGTGCTTATAACT+TGG | 0.483458 | 6_1:+63250958 | Msa0890310:CDS |
| ATACTACACTGCCAGTTAAG+AGG | 0.487504 | 6_1:+63247678 | Msa0890310:CDS |
| AAGCAAGAAAGAGGAATTCA+AGG | 0.490623 | 6_1:+63248069 | Msa0890310:CDS |
| GATCAATTAAGTCATACAAT+TGG | 0.493216 | 6_1:+63249448 | Msa0890310:CDS |
| AAAAGTTGAAAGCAAGAAAG+AGG | 0.497831 | 6_1:+63248060 | Msa0890310:CDS |
| TGGTCTTTCCCTGTTAACTC+AGG | 0.501418 | 6_1:-63248829 | None:intergenic |
| AATGTAAAGAAATGTGGTAA+TGG | 0.507793 | 6_1:+63251351 | Msa0890310:three_prime_UTR |
| ATATGCAGTTGCATCTTACA+TGG | 0.508808 | 6_1:+63249423 | Msa0890310:intron |
| TTGATTTGAAATACTCAACT+TGG | 0.512958 | 6_1:-63248648 | None:intergenic |
| AAAGGAGTTAGAATTAAAAG+AGG | 0.516014 | 6_1:+63248528 | Msa0890310:CDS |
| AACTGTTTAAGAAATGCATA+AGG | 0.525331 | 6_1:+63247861 | Msa0890310:CDS |
| TTAAGAAATGCATAAGGAAG+AGG | 0.526436 | 6_1:+63247867 | Msa0890310:CDS |
| CGAAAGGAAGCAGTTACTAA+AGG | 0.530759 | 6_1:+63248198 | Msa0890310:CDS |
| CGGCACTCAACTGTGTAAGA+AGG | 0.531518 | 6_1:+63249600 | Msa0890310:CDS |
| GAAATTTACAACAAAATGCT+GGG | 0.536623 | 6_1:+63247995 | Msa0890310:CDS |
| CTGATTAATGTAAAGAAATG+TGG | 0.539660 | 6_1:+63251345 | Msa0890310:three_prime_UTR |
| CTGATGTTTCTGTTAAGAAG+AGG | 0.551021 | 6_1:+63247645 | Msa0890310:CDS |
| TGCTCAGCACAAGACAGCTA+TGG | 0.554357 | 6_1:+63249867 | Msa0890310:CDS |
| CTTGAACTCGGAGAATATCT+CGG | 0.558533 | 6_1:-63247599 | None:intergenic |
| AATGGAACTAAAGTCAAAAG+AGG | 0.561945 | 6_1:+63248486 | Msa0890310:CDS |
| TGATGTTTCTGTTAAGAAGA+GGG | 0.562050 | 6_1:+63247646 | Msa0890310:CDS |
| CTGAAATATTAGAGTCCGAA+AGG | 0.564325 | 6_1:+63248182 | Msa0890310:CDS |
| TCAAGAGCGAAGCAGATGAA+AGG | 0.564494 | 6_1:+63248373 | Msa0890310:CDS |
| GCAATGAAAATATTAATTAG+CGG | 0.566234 | 6_1:+63248154 | Msa0890310:CDS |
| TCAGTTCAAAGTAAAGGAGA+AGG | 0.569881 | 6_1:+63248720 | Msa0890310:CDS |
| TTTGTGTTGGTGATGATGAT+GGG | 0.570871 | 6_1:+63247453 | Msa0890310:CDS |
| AAGAGAATCAGTGCAAAGAA+CGG | 0.574336 | 6_1:+63248293 | Msa0890310:CDS |
| AAAAGTTGAAAGCAAGGAAG+AGG | 0.574724 | 6_1:+63248018 | Msa0890310:CDS |
| CGGATTTGGCGAACAACTGA+AGG | 0.575797 | 6_1:+63248804 | Msa0890310:CDS |
| TGCAAGACAAGGAAAGTACA+TGG | 0.578415 | 6_1:-63251456 | None:intergenic |
| ACCCTAACAAAAGTAGAAGT+AGG | 0.578919 | 6_1:-63251377 | None:intergenic |
| AAAATTGGATGGCCGAGTGA+AGG | 0.583888 | 6_1:+63248552 | Msa0890310:CDS |
| CATCACATTCAGATGTGATG+AGG | 0.585028 | 6_1:+63247516 | Msa0890310:CDS |
| GGCACTCAACTGTGTAAGAA+GGG | 0.589889 | 6_1:+63249601 | Msa0890310:CDS |
| GAAGGAGCTCAAGTTAAAAG+AGG | 0.591550 | 6_1:+63248738 | Msa0890310:CDS |
| GGTGGAGGAACTTGAGTCGA+AGG | 0.591983 | 6_1:+63248315 | Msa0890310:CDS |
| TGGTAGAACGAATTTGCAGA+TGG | 0.592195 | 6_1:+63249468 | Msa0890310:CDS |
| AGACAATAGCCTAGAATCTG+AGG | 0.593344 | 6_1:+63251243 | Msa0890310:CDS |
| CATGTTCCCAAACTTGAACT+CGG | 0.594075 | 6_1:-63247611 | None:intergenic |
| GCTGGGAAAAGTTGAAAGCA+AGG | 0.594654 | 6_1:+63248012 | Msa0890310:CDS |
| TGAAGGAGCCTGAGTTAACA+GGG | 0.598581 | 6_1:+63248821 | Msa0890310:CDS |
| ACAGTTTGAGTCAATGAAGA+GGG | 0.599438 | 6_1:+63248405 | Msa0890310:CDS |
| TCAGTGCAAAGAACGGGTGG+AGG | 0.600890 | 6_1:+63248300 | Msa0890310:CDS |
| AAGCAAGGAAGAGGAACTCA+AGG | 0.603911 | 6_1:+63248027 | Msa0890310:CDS |
| ATCACATTCAGATGTGATGA+GGG | 0.611812 | 6_1:+63247517 | Msa0890310:CDS |
| GAGGGAACCTGTTTCTTGTG+AGG | 0.612930 | 6_1:+63247535 | Msa0890310:CDS |
| AACAGTTTGAGTCAATGAAG+AGG | 0.615655 | 6_1:+63248404 | Msa0890310:CDS |
| ATGTCACCATATTCTGATCA+CGG | 0.617697 | 6_1:+63247749 | Msa0890310:CDS |
| ATTAACTTCTTTCTTCAGCG+AGG | 0.621304 | 6_1:-63247828 | None:intergenic |
| GGAGAATATCTCGGTGACAC+AGG | 0.625035 | 6_1:-63247590 | None:intergenic |
| ATCTGAGGATCTGCTTCGCG+AGG | 0.629635 | 6_1:+63251258 | Msa0890310:CDS |
| ACGATAAGCAATTTGAAGCA+CGG | 0.630647 | 6_1:+63248671 | Msa0890310:CDS |
| GTTCTTCTAACAAATAGATG+TGG | 0.633704 | 6_1:-63249651 | None:intergenic |
| TTGTTAAGTATCTTATCAGG+AGG | 0.634017 | 6_1:+63250912 | Msa0890310:CDS |
| GAGCTTGAGTCAAAGATGAA+CGG | 0.638322 | 6_1:+63248784 | Msa0890310:CDS |
| GAATCAGTGCAAAGAACGGG+TGG | 0.644245 | 6_1:+63248297 | Msa0890310:CDS |
| TCTTACACAGTTGAGTGCCG+GGG | 0.654619 | 6_1:-63249597 | None:intergenic |
| TAAAGGGCTCAATTCATGTG+AGG | 0.672504 | 6_1:+63247487 | Msa0890310:CDS |
| TTGAAAGCAGAAGAACTCGA+AGG | 0.687468 | 6_1:+63248583 | Msa0890310:CDS |
| TTGGAAATAATACAGAACCC+CGG | 0.707048 | 6_1:+63249580 | Msa0890310:CDS |
| ATAAGCAATTTGAAGCACGG+TGG | 0.752378 | 6_1:+63248674 | Msa0890310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTGTTTTCAATTTTA+TGG | + | chr6_1:63251478-63251497 | Msa0890310:three_prime_UTR | 10.0% |
| !!! | TATGTTAATTTAGAATGTTT+TGG | + | chr6_1:63249930-63249949 | Msa0890310:intron | 15.0% |
| !!! | TTTACTCATTTTATCATTTA+TGG | + | chr6_1:63250129-63250148 | Msa0890310:intron | 15.0% |
| !! | GCAATGAAAATATTAATTAG+CGG | + | chr6_1:63248154-63248173 | Msa0890310:CDS | 20.0% |
| !! | AGAATTAAAAGAGGAAAAAT+TGG | + | chr6_1:63248537-63248556 | Msa0890310:CDS | 20.0% |
| !!! | TATCTTCGTTTATTTAGTTT+TGG | + | chr6_1:63249211-63249230 | Msa0890310:intron | 20.0% |
| !! | TTTCCTAGATTGAAATTTAT+GGG | - | chr6_1:63249293-63249312 | None:intergenic | 20.0% |
| !! | ATTTCCTAGATTGAAATTTA+TGG | - | chr6_1:63249294-63249313 | None:intergenic | 20.0% |
| !! | AGAGAATACTAAAAATTCTT+CGG | + | chr6_1:63249756-63249775 | Msa0890310:CDS | 20.0% |
| !! | TTAATATCTTATATGCAGTT+AGG | + | chr6_1:63250026-63250045 | Msa0890310:intron | 20.0% |
| !! | TTTATCATTTATGGTATATG+TGG | + | chr6_1:63250138-63250157 | Msa0890310:intron | 20.0% |
| !! | TTATCATTTATGGTATATGT+GGG | + | chr6_1:63250139-63250158 | Msa0890310:intron | 20.0% |
| !!! | TGTTTTTCTCAAATAATTAG+TGG | - | chr6_1:63250397-63250416 | None:intergenic | 20.0% |
| !!! | TCATTTCAGAGATTTATTTT+GGG | - | chr6_1:63250657-63250676 | None:intergenic | 20.0% |
| !!! | TTCATTTCAGAGATTTATTT+TGG | - | chr6_1:63250658-63250677 | None:intergenic | 20.0% |
| !!! | TCTTTTTTTTTTCTTCTTTC+TGG | + | chr6_1:63250849-63250868 | Msa0890310:intron | 20.0% |
| !!! | ATTTTGTTAAGTATCTTATC+AGG | + | chr6_1:63250909-63250928 | Msa0890310:CDS | 20.0% |
| ! | ATGGGAACTTAAATGTTAAA+GGG | + | chr6_1:63247471-63247490 | Msa0890310:CDS | 25.0% |
| ! | TTTCTTAACAGAAATGTTCA+AGG | - | chr6_1:63247723-63247742 | None:intergenic | 25.0% |
| ! | AACTGTTTAAGAAATGCATA+AGG | + | chr6_1:63247861-63247880 | Msa0890310:CDS | 25.0% |
| ! | TTCTTCAATATCTCTCTTTA+TGG | - | chr6_1:63247918-63247937 | None:intergenic | 25.0% |
| ! | TGAAATTTACAACAAAATGC+TGG | + | chr6_1:63247994-63248013 | Msa0890310:CDS | 25.0% |
| ! | GAAATTTACAACAAAATGCT+GGG | + | chr6_1:63247995-63248014 | Msa0890310:CDS | 25.0% |
| !! | TTTCTTGCTTTCAACTTTTT+GGG | - | chr6_1:63248059-63248078 | None:intergenic | 25.0% |
| !! | GATTACTTTCAACAACTTTT+TGG | - | chr6_1:63248102-63248121 | None:intergenic | 25.0% |
| ! | AAAAGTTGTTGAAAGTAATC+TGG | + | chr6_1:63248102-63248121 | Msa0890310:CDS | 25.0% |
| ! | GGAACTTGAAAATCATATAA+AGG | + | chr6_1:63248426-63248445 | Msa0890310:CDS | 25.0% |
| !! | TCAAAAAATAAGCAAGTTGA+AGG | + | chr6_1:63248457-63248476 | Msa0890310:CDS | 25.0% |
| !! | TTAATTCTAACTCCTTTTTC+TGG | - | chr6_1:63248525-63248544 | None:intergenic | 25.0% |
| ! | AAAGGAGTTAGAATTAAAAG+AGG | + | chr6_1:63248528-63248547 | Msa0890310:CDS | 25.0% |
| ! | TTAAAAGAGGAAAAATTGGA+TGG | + | chr6_1:63248541-63248560 | Msa0890310:CDS | 25.0% |
| !! | TTGATTTGAAATACTCAACT+TGG | - | chr6_1:63248651-63248670 | None:intergenic | 25.0% |
| !!! | TATGTTTTTTTAACGCTTCA+TGG | - | chr6_1:63248852-63248871 | None:intergenic | 25.0% |
| ! | GTTAAAAAAACATATTGACG+AGG | + | chr6_1:63248858-63248877 | Msa0890310:CDS | 25.0% |
| ! | GAGATTCATAAAATGTTCAA+GGG | - | chr6_1:63249019-63249038 | None:intergenic | 25.0% |
| ! | AGAGATTCATAAAATGTTCA+AGG | - | chr6_1:63249020-63249039 | None:intergenic | 25.0% |
| !!! | AATTCTTCTGTTTTTATCCA+TGG | + | chr6_1:63249050-63249069 | Msa0890310:intron | 25.0% |
| ! | TTATTATTAAACCTTAGCCA+TGG | - | chr6_1:63249070-63249089 | None:intergenic | 25.0% |
| ! | GATCAATTAAGTCATACAAT+TGG | + | chr6_1:63249448-63249467 | Msa0890310:CDS | 25.0% |
| ! | TACCAAAGCATAAAGATAAA+AGG | - | chr6_1:63249974-63249993 | None:intergenic | 25.0% |
| !! | TTAGTTAGTTGGATACATTT+TGG | + | chr6_1:63250288-63250307 | Msa0890310:intron | 25.0% |
| !!! | GATTTATTTTGGGTTATAGT+TGG | - | chr6_1:63250647-63250666 | None:intergenic | 25.0% |
| !!! | ATAAATCTCTGAAATGAATG+TGG | + | chr6_1:63250660-63250679 | Msa0890310:intron | 25.0% |
| !!! | TTCTTTCTGGTAAATTTTGA+TGG | + | chr6_1:63250862-63250881 | Msa0890310:intron | 25.0% |
| ! | AACTAACTCAATTGAAATCA+AGG | + | chr6_1:63251060-63251079 | Msa0890310:CDS | 25.0% |
| ! | ATTACTATAAACTTGAACTC+AGG | + | chr6_1:63251165-63251184 | Msa0890310:intron | 25.0% |
| !!! | ATAAAGGCAAATAGGTTTTT+TGG | + | chr6_1:63251314-63251333 | Msa0890310:exon | 25.0% |
| ! | CTGATTAATGTAAAGAAATG+TGG | + | chr6_1:63251345-63251364 | Msa0890310:three_prime_UTR | 25.0% |
| ! | AATGTAAAGAAATGTGGTAA+TGG | + | chr6_1:63251351-63251370 | Msa0890310:three_prime_UTR | 25.0% |
| ! | AAAACAAAAAATGCAAGACA+AGG | - | chr6_1:63251470-63251489 | None:intergenic | 25.0% |
| ! | GATAAGCAAAACTTTTGTGT+TGG | + | chr6_1:63247440-63247459 | Msa0890310:CDS | 30.0% |
| GATGGGAACTTAAATGTTAA+AGG | + | chr6_1:63247470-63247489 | Msa0890310:CDS | 30.0% | |
| ! | TGATGTTTCTGTTAAGAAGA+GGG | + | chr6_1:63247646-63247665 | Msa0890310:CDS | 30.0% |
| TTATCATACAACCTCTTAAC+TGG | - | chr6_1:63247692-63247711 | None:intergenic | 30.0% | |
| GCTGAAGAAAGAAGTTAATT+TGG | + | chr6_1:63247832-63247851 | Msa0890310:CDS | 30.0% | |
| TTAAGAAATGCATAAGGAAG+AGG | + | chr6_1:63247867-63247886 | Msa0890310:CDS | 30.0% | |
| ! | CTTTCTTGCTTTCAACTTTT+TGG | - | chr6_1:63248060-63248079 | None:intergenic | 30.0% |
| AAAAGTTGAAAGCAAGAAAG+AGG | + | chr6_1:63248060-63248079 | Msa0890310:CDS | 30.0% | |
| AATGGAACTAAAGTCAAAAG+AGG | + | chr6_1:63248486-63248505 | Msa0890310:CDS | 30.0% | |
| CGAGTCAAAAAATAAGCATT+TGG | + | chr6_1:63248621-63248640 | Msa0890310:CDS | 30.0% | |
| AGAGAATCAGTTCAAAGTAA+AGG | + | chr6_1:63248714-63248733 | Msa0890310:CDS | 30.0% | |
| CGTTAAATGAAGGAAACAAT+AGG | - | chr6_1:63249354-63249373 | None:intergenic | 30.0% | |
| ATTTCCAAAACAAGTCTTGA+TGG | - | chr6_1:63249568-63249587 | None:intergenic | 30.0% | |
| GTTCTTCTAACAAATAGATG+TGG | - | chr6_1:63249654-63249673 | None:intergenic | 30.0% | |
| ! | TTTCGATGAATGCAAAGTTT+TGG | + | chr6_1:63249828-63249847 | Msa0890310:CDS | 30.0% |
| ! | GGTTTTGCAAATAAAGTTTC+TGG | + | chr6_1:63249907-63249926 | Msa0890310:CDS | 30.0% |
| CAAAGCATAAAGATAAAAGG+AGG | - | chr6_1:63249971-63249990 | None:intergenic | 30.0% | |
| ! | CTCCTTTTATCTTTATGCTT+TGG | + | chr6_1:63249969-63249988 | Msa0890310:intron | 30.0% |
| TCTTATATGCAGTTAGGATA+AGG | + | chr6_1:63250032-63250051 | Msa0890310:intron | 30.0% | |
| GTAAAACCACATTAGTTAGT+TGG | + | chr6_1:63250277-63250296 | Msa0890310:intron | 30.0% | |
| ATGTATCCAACTAACTAATG+TGG | - | chr6_1:63250286-63250305 | None:intergenic | 30.0% | |
| AATATGATTCAGATATGCTC+TGG | - | chr6_1:63250567-63250586 | None:intergenic | 30.0% | |
| AGAGTTCAATGAAACATACT+AGG | - | chr6_1:63250590-63250609 | None:intergenic | 30.0% | |
| GATACTTAACAAAATCTGCA+AGG | - | chr6_1:63250904-63250923 | None:intergenic | 30.0% | |
| TTGTTAAGTATCTTATCAGG+AGG | + | chr6_1:63250912-63250931 | Msa0890310:CDS | 30.0% | |
| ATTCAGTTGTGCTTATAACT+TGG | + | chr6_1:63250958-63250977 | Msa0890310:CDS | 30.0% | |
| !!! | TTGAGTTAGTTTTCTCACAA+CGG | - | chr6_1:63251051-63251070 | None:intergenic | 30.0% |
| TAAGTTATCAGTATCATGCA+GGG | - | chr6_1:63251145-63251164 | None:intergenic | 30.0% | |
| TTAAGTTATCAGTATCATGC+AGG | - | chr6_1:63251146-63251165 | None:intergenic | 30.0% | |
| ATAAACTTGAACTCAGGATA+AGG | + | chr6_1:63251171-63251190 | Msa0890310:intron | 30.0% | |
| AAACGAACATAAAGGCAAAT+AGG | + | chr6_1:63251306-63251325 | Msa0890310:CDS | 30.0% | |
| !! | AACCTACTTCTACTTTTGTT+AGG | + | chr6_1:63251375-63251394 | Msa0890310:three_prime_UTR | 30.0% |
| !! | ACCTACTTCTACTTTTGTTA+GGG | + | chr6_1:63251376-63251395 | Msa0890310:three_prime_UTR | 30.0% |
| TTAGAGCTATCTGTATTTCT+TGG | + | chr6_1:63251431-63251450 | Msa0890310:intron | 30.0% | |
| !!! | TTTTGTGTTGGTGATGATGA+TGG | + | chr6_1:63247452-63247471 | Msa0890310:CDS | 35.0% |
| !! | TTTGTGTTGGTGATGATGAT+GGG | + | chr6_1:63247453-63247472 | Msa0890310:CDS | 35.0% |
| ATCACATTCAGATGTGATGA+GGG | + | chr6_1:63247517-63247536 | Msa0890310:CDS | 35.0% | |
| ! | ATATTCTCCGAGTTCAAGTT+TGG | + | chr6_1:63247604-63247623 | Msa0890310:CDS | 35.0% |
| ! | TATTCTCCGAGTTCAAGTTT+GGG | + | chr6_1:63247605-63247624 | Msa0890310:CDS | 35.0% |
| CTCTTCTTAACAGAAACATC+AGG | - | chr6_1:63247647-63247666 | None:intergenic | 35.0% | |
| ! | CTGATGTTTCTGTTAAGAAG+AGG | + | chr6_1:63247645-63247664 | Msa0890310:CDS | 35.0% |
| TCAGAATATGGTGACATCTT+TGG | - | chr6_1:63247746-63247765 | None:intergenic | 35.0% | |
| ATGTCACCATATTCTGATCA+CGG | + | chr6_1:63247749-63247768 | Msa0890310:CDS | 35.0% | |
| ATTAACTTCTTTCTTCAGCG+AGG | - | chr6_1:63247831-63247850 | None:intergenic | 35.0% | |
| AGAGAGATATTGAAGAATGC+TGG | + | chr6_1:63247921-63247940 | Msa0890310:CDS | 35.0% | |
| AAAAGTTGAAAGCAAGGAAG+AGG | + | chr6_1:63248018-63248037 | Msa0890310:CDS | 35.0% | |
| AAGCAAGAAAGAGGAATTCA+AGG | + | chr6_1:63248069-63248088 | Msa0890310:CDS | 35.0% | |
| CTGAAATATTAGAGTCCGAA+AGG | + | chr6_1:63248182-63248201 | Msa0890310:CDS | 35.0% | |
| CTTTAGTAACTGCTTCCTTT+CGG | - | chr6_1:63248200-63248219 | None:intergenic | 35.0% | |
| AAGAGAATCAGTGCAAAGAA+CGG | + | chr6_1:63248293-63248312 | Msa0890310:CDS | 35.0% | |
| AACAGTTTGAGTCAATGAAG+AGG | + | chr6_1:63248404-63248423 | Msa0890310:CDS | 35.0% | |
| ACAGTTTGAGTCAATGAAGA+GGG | + | chr6_1:63248405-63248424 | Msa0890310:CDS | 35.0% | |
| ! | ACGATAAGCAATTTGAAGCA+CGG | + | chr6_1:63248671-63248690 | Msa0890310:CDS | 35.0% |
| TCAGTTCAAAGTAAAGGAGA+AGG | + | chr6_1:63248720-63248739 | Msa0890310:CDS | 35.0% | |
| GCAGATTGAAGTACAATTCA+AGG | + | chr6_1:63248762-63248781 | Msa0890310:CDS | 35.0% | |
| !!! | TCTGTTTTTATCCATGGCTA+AGG | + | chr6_1:63249056-63249075 | Msa0890310:intron | 35.0% |
| TGCACATACTTGCATATACT+TGG | - | chr6_1:63249148-63249167 | None:intergenic | 35.0% | |
| TCGCCCATAAATTTCAATCT+AGG | + | chr6_1:63249287-63249306 | Msa0890310:intron | 35.0% | |
| !! | ATCGAAGCATCGTTAAATGA+AGG | - | chr6_1:63249364-63249383 | None:intergenic | 35.0% |
| !! | TATGAGGGTGCTAAAATATC+TGG | + | chr6_1:63249387-63249406 | Msa0890310:intron | 35.0% |
| ATATGCAGTTGCATCTTACA+TGG | + | chr6_1:63249423-63249442 | Msa0890310:intron | 35.0% | |
| !! | AGATCCATCAAGACTTGTTT+TGG | + | chr6_1:63249561-63249580 | Msa0890310:CDS | 35.0% |
| TTGGAAATAATACAGAACCC+CGG | + | chr6_1:63249580-63249599 | Msa0890310:CDS | 35.0% | |
| AAAAATTCTTCGGCTGTTCT+CGG | + | chr6_1:63249766-63249785 | Msa0890310:CDS | 35.0% | |
| CTTCTGCTTCTGTCAATATA+TGG | + | chr6_1:63249793-63249812 | Msa0890310:CDS | 35.0% | |
| ! | TAGGATAAGGTTGCTTGTTA+TGG | + | chr6_1:63250045-63250064 | Msa0890310:intron | 35.0% |
| ACAACTAAGAGAATGACAGT+TGG | + | chr6_1:63250244-63250263 | Msa0890310:intron | 35.0% | |
| !! | TGCTTCATAGTTCTAGTCTA+GGG | - | chr6_1:63250343-63250362 | None:intergenic | 35.0% |
| TAGACTAGAACTATGAAGCA+CGG | + | chr6_1:63250343-63250362 | Msa0890310:intron | 35.0% | |
| TATATGTGTTAGTGTCGTGT+CGG | + | chr6_1:63250433-63250452 | Msa0890310:intron | 35.0% | |
| ! | CTTTTTATGCCTTCATCACT+TGG | - | chr6_1:63250775-63250794 | None:intergenic | 35.0% |
| AACAAAATCTGCAAGGTACA+AGG | - | chr6_1:63250897-63250916 | None:intergenic | 35.0% | |
| TACAAATCAGTTTCGCATTC+TGG | - | chr6_1:63251024-63251043 | None:intergenic | 35.0% | |
| AAGTTATCAGTATCATGCAG+GGG | - | chr6_1:63251144-63251163 | None:intergenic | 35.0% | |
| AGATCAAGAAATCGCTAGTT+TGG | + | chr6_1:63251198-63251217 | Msa0890310:CDS | 35.0% | |
| ! | GATCAAGAAATCGCTAGTTT+GGG | + | chr6_1:63251199-63251218 | Msa0890310:CDS | 35.0% |
| CATGAGCTAAACGAACATAA+AGG | + | chr6_1:63251298-63251317 | Msa0890310:CDS | 35.0% | |
| ACCCTAACAAAAGTAGAAGT+AGG | - | chr6_1:63251380-63251399 | None:intergenic | 35.0% | |
| TAAAGGGCTCAATTCATGTG+AGG | + | chr6_1:63247487-63247506 | Msa0890310:CDS | 40.0% | |
| CATCACATTCAGATGTGATG+AGG | + | chr6_1:63247516-63247535 | Msa0890310:CDS | 40.0% | |
| TCAAAGTCCTCACAAGAAAC+AGG | - | chr6_1:63247545-63247564 | None:intergenic | 40.0% | |
| CTTGAACTCGGAGAATATCT+CGG | - | chr6_1:63247602-63247621 | None:intergenic | 40.0% | |
| CATGTTCCCAAACTTGAACT+CGG | - | chr6_1:63247614-63247633 | None:intergenic | 40.0% | |
| ATACTACACTGCCAGTTAAG+AGG | + | chr6_1:63247678-63247697 | Msa0890310:CDS | 40.0% | |
| TGCATCAAGCTCTTTCTCTT+TGG | - | chr6_1:63248137-63248156 | None:intergenic | 40.0% | |
| CGAAAGGAAGCAGTTACTAA+AGG | + | chr6_1:63248198-63248217 | Msa0890310:CDS | 40.0% | |
| GCGACTTGAAGGTCATATTA+AGG | + | chr6_1:63248258-63248277 | Msa0890310:CDS | 40.0% | |
| AGAGAATCAGTGCAAAGAAC+GGG | + | chr6_1:63248294-63248313 | Msa0890310:CDS | 40.0% | |
| !! | TCGAAGGAGAAGTACTTAGA+AGG | + | chr6_1:63248331-63248350 | Msa0890310:CDS | 40.0% |
| TCAATTCATGCTCCTTCACT+CGG | - | chr6_1:63248567-63248586 | None:intergenic | 40.0% | |
| TTGAAAGCAGAAGAACTCGA+AGG | + | chr6_1:63248583-63248602 | Msa0890310:CDS | 40.0% | |
| ! | ATAAGCAATTTGAAGCACGG+TGG | + | chr6_1:63248674-63248693 | Msa0890310:CDS | 40.0% |
| GAAGGAGCTCAAGTTAAAAG+AGG | + | chr6_1:63248738-63248757 | Msa0890310:CDS | 40.0% | |
| GAGCTTGAGTCAAAGATGAA+CGG | + | chr6_1:63248784-63248803 | Msa0890310:CDS | 40.0% | |
| ! | GAGTCAAAGATGAACGGATT+TGG | + | chr6_1:63248790-63248809 | Msa0890310:CDS | 40.0% |
| ACGATGCTTCGATCAATATG+AGG | + | chr6_1:63249371-63249390 | Msa0890310:intron | 40.0% | |
| CGATGCTTCGATCAATATGA+GGG | + | chr6_1:63249372-63249391 | Msa0890310:intron | 40.0% | |
| TGGTAGAACGAATTTGCAGA+TGG | + | chr6_1:63249468-63249487 | Msa0890310:CDS | 40.0% | |
| CGTACACAAGGTTTGATACT+TGG | - | chr6_1:63249691-63249710 | None:intergenic | 40.0% | |
| !!! | AACGCTTTTTCTCGTACACA+AGG | - | chr6_1:63249703-63249722 | None:intergenic | 40.0% |
| GTTGAAGTTAGCACGTGATT+TGG | + | chr6_1:63249720-63249739 | Msa0890310:CDS | 40.0% | |
| ! | ATGGAGCTGTTTGAGACTTT+CGG | + | chr6_1:63249886-63249905 | Msa0890310:CDS | 40.0% |
| !! | CATTAGCCCACTCTAAGATA+GGG | + | chr6_1:63250098-63250117 | Msa0890310:intron | 40.0% |
| TTGACACCCTATCTTAGAGT+GGG | - | chr6_1:63250107-63250126 | None:intergenic | 40.0% | |
| ATTGACACCCTATCTTAGAG+TGG | - | chr6_1:63250108-63250127 | None:intergenic | 40.0% | |
| !! | CTTCATAGTTCTAGTCTAGG+GGG | - | chr6_1:63250341-63250360 | None:intergenic | 40.0% |
| !! | GCTTCATAGTTCTAGTCTAG+GGG | - | chr6_1:63250342-63250361 | None:intergenic | 40.0% |
| !! | GTGCTTCATAGTTCTAGTCT+AGG | - | chr6_1:63250344-63250363 | None:intergenic | 40.0% |
| GAGGATTGTCTATGCTTCAT+AGG | + | chr6_1:63250499-63250518 | Msa0890310:intron | 40.0% | |
| TGAATGAACCAAGAACAGCT+TGG | - | chr6_1:63250619-63250638 | None:intergenic | 40.0% | |
| TGCACAAGTCGTATACTCTT+GGG | - | chr6_1:63250733-63250752 | None:intergenic | 40.0% | |
| AGACAATAGCCTAGAATCTG+AGG | + | chr6_1:63251243-63251262 | Msa0890310:CDS | 40.0% | |
| ! | TGCAAGACAAGGAAAGTACA+TGG | - | chr6_1:63251459-63251478 | None:intergenic | 40.0% |
| TCTTCGCCGTGATCAGAATA+TGG | - | chr6_1:63247758-63247777 | None:intergenic | 45.0% | |
| GCTGGGAAAAGTTGAAAGCA+AGG | + | chr6_1:63248012-63248031 | Msa0890310:CDS | 45.0% | |
| AAGCAAGGAAGAGGAACTCA+AGG | + | chr6_1:63248027-63248046 | Msa0890310:CDS | 45.0% | |
| GCTCAAATGAAGCGACTTGA+AGG | + | chr6_1:63248247-63248266 | Msa0890310:CDS | 45.0% | |
| TCAAGAGCGAAGCAGATGAA+AGG | + | chr6_1:63248373-63248392 | Msa0890310:CDS | 45.0% | |
| ! | GCAAGTTGAAGGACGAGAAA+TGG | + | chr6_1:63248468-63248487 | Msa0890310:CDS | 45.0% |
| ! | TCAAAAGAGGTGCAGCTTGA+AGG | + | chr6_1:63248499-63248518 | Msa0890310:CDS | 45.0% |
| AAAATTGGATGGCCGAGTGA+AGG | + | chr6_1:63248552-63248571 | Msa0890310:CDS | 45.0% | |
| AGAACTCGAAGGTCGAGTTA+AGG | + | chr6_1:63248594-63248613 | Msa0890310:CDS | 45.0% | |
| TGAAGGAGCCTGAGTTAACA+GGG | + | chr6_1:63248821-63248840 | Msa0890310:CDS | 45.0% | |
| TGGTCTTTCCCTGTTAACTC+AGG | - | chr6_1:63248832-63248851 | None:intergenic | 45.0% | |
| TTCTTACACAGTTGAGTGCC+GGG | - | chr6_1:63249601-63249620 | None:intergenic | 45.0% | |
| CTTCTTACACAGTTGAGTGC+CGG | - | chr6_1:63249602-63249621 | None:intergenic | 45.0% | |
| GGCACTCAACTGTGTAAGAA+GGG | + | chr6_1:63249601-63249620 | Msa0890310:CDS | 45.0% | |
| !! | GCATTAGCCCACTCTAAGAT+AGG | + | chr6_1:63250097-63250116 | Msa0890310:intron | 45.0% |
| ACACGACACATTTCCTACAC+CGG | + | chr6_1:63250462-63250481 | Msa0890310:intron | 45.0% | |
| CTCTTTCACCAAGCTGTTCT+TGG | + | chr6_1:63250608-63250627 | Msa0890310:intron | 45.0% | |
| GTGCACAAGTCGTATACTCT+TGG | - | chr6_1:63250734-63250753 | None:intergenic | 45.0% | |
| GAAGCAGATCCTCAGATTCT+AGG | - | chr6_1:63251255-63251274 | None:intergenic | 45.0% | |
| ! | GAGGGAACCTGTTTCTTGTG+AGG | + | chr6_1:63247535-63247554 | Msa0890310:CDS | 50.0% |
| GGAGAATATCTCGGTGACAC+AGG | - | chr6_1:63247593-63247612 | None:intergenic | 50.0% | |
| GAATCAGTGCAAAGAACGGG+TGG | + | chr6_1:63248297-63248316 | Msa0890310:CDS | 50.0% | |
| GCAGCTTGAAGGCCAGAAAA+AGG | + | chr6_1:63248510-63248529 | Msa0890310:CDS | 50.0% | |
| CGGATTTGGCGAACAACTGA+AGG | + | chr6_1:63248804-63248823 | Msa0890310:CDS | 50.0% | |
| CTGAAGGAGCCTGAGTTAAC+AGG | + | chr6_1:63248820-63248839 | Msa0890310:CDS | 50.0% | |
| ! | TCTTACACAGTTGAGTGCCG+GGG | - | chr6_1:63249600-63249619 | None:intergenic | 50.0% |
| CGGCACTCAACTGTGTAAGA+AGG | + | chr6_1:63249600-63249619 | Msa0890310:CDS | 50.0% | |
| TGCTCAGCACAAGACAGCTA+TGG | + | chr6_1:63249867-63249886 | Msa0890310:CDS | 50.0% | |
| ! | TGTTAGTGTCGTGTCGGTGT+CGG | + | chr6_1:63250439-63250458 | Msa0890310:intron | 50.0% |
| CACGACACATTTCCTACACC+GGG | + | chr6_1:63250463-63250482 | Msa0890310:intron | 50.0% | |
| TCAGTGCAAAGAACGGGTGG+AGG | + | chr6_1:63248300-63248319 | Msa0890310:CDS | 55.0% | |
| GGTGGAGGAACTTGAGTCGA+AGG | + | chr6_1:63248315-63248334 | Msa0890310:CDS | 55.0% | |
| CATTAGACGTGTCCCGGTGT+AGG | - | chr6_1:63250478-63250497 | None:intergenic | 55.0% | |
| TCCTCGCATTAGACGTGTCC+CGG | - | chr6_1:63250484-63250503 | None:intergenic | 55.0% | |
| !! | GCCTTCATCACTTGGCTCTG+CGG | - | chr6_1:63250767-63250786 | None:intergenic | 55.0% |
| ATCTGAGGATCTGCTTCGCG+AGG | + | chr6_1:63251258-63251277 | Msa0890310:CDS | 55.0% | |
| ACCGGGACACGTCTAATGCG+AGG | + | chr6_1:63250480-63250499 | Msa0890310:intron | 60.0% | |
| !! | TTGGCTCTGCGGCTGTCACA+CGG | - | chr6_1:63250756-63250775 | None:intergenic | 60.0% |
| GCCGCAGAGCCAAGTGATGA+AGG | + | chr6_1:63250763-63250782 | Msa0890310:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 63247419 | 63251549 | 63247419 | ID=Msa0890310;Name=Msa0890310 |
| chr6_1 | mRNA | 63247419 | 63251549 | 63247419 | ID=Msa0890310-mRNA-1;Parent=Msa0890310;Name=Msa0890310-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0.75|0.8|1|0.75|0.6|5|184|761 |
| chr6_1 | exon | 63247419 | 63248892 | 63247419 | ID=Msa0890310-mRNA-1:exon:11525;Parent=Msa0890310-mRNA-1 |
| chr6_1 | exon | 63249431 | 63249928 | 63249431 | ID=Msa0890310-mRNA-1:exon:11526;Parent=Msa0890310-mRNA-1 |
| chr6_1 | exon | 63250909 | 63251081 | 63250909 | ID=Msa0890310-mRNA-1:exon:11527;Parent=Msa0890310-mRNA-1 |
| chr6_1 | exon | 63251187 | 63251398 | 63251187 | ID=Msa0890310-mRNA-1:exon:11528;Parent=Msa0890310-mRNA-1 |
| chr6_1 | exon | 63251437 | 63251549 | 63251437 | ID=Msa0890310-mRNA-1:exon:11529;Parent=Msa0890310-mRNA-1 |
| chr6_1 | CDS | 63247419 | 63248892 | 63247419 | ID=Msa0890310-mRNA-1:cds;Parent=Msa0890310-mRNA-1 |
| chr6_1 | CDS | 63249431 | 63249928 | 63249431 | ID=Msa0890310-mRNA-1:cds;Parent=Msa0890310-mRNA-1 |
| chr6_1 | CDS | 63250909 | 63251081 | 63250909 | ID=Msa0890310-mRNA-1:cds;Parent=Msa0890310-mRNA-1 |
| chr6_1 | CDS | 63251187 | 63251327 | 63251187 | ID=Msa0890310-mRNA-1:cds;Parent=Msa0890310-mRNA-1 |
| chr6_1 | three_prime_UTR | 63251328 | 63251398 | 63251328 | ID=Msa0890310-mRNA-1:three_prime_utr;Parent=Msa0890310-mRNA-1 |
| chr6_1 | three_prime_UTR | 63251437 | 63251549 | 63251437 | ID=Msa0890310-mRNA-1:three_prime_utr;Parent=Msa0890310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
