Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0955280 | XP_013452099.1 | 87.109 | 768 | 78 | 2 | 1 | 747 | 1 | 768 | 0.0 | 1259 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0768290 | Msa0955280 | 0.814848 | 1.249890e-51 | -8.615850e-47 |
| Msa0479340 | Msa0955280 | 0.807501 | 4.900359e-50 | -8.615850e-47 |
| Msa0240420 | Msa0955280 | 0.803725 | 3.039207e-49 | -8.615850e-47 |
| Msa0890310 | Msa0955280 | 0.873843 | 1.074074e-67 | -8.615850e-47 |
| Msa0925190 | Msa0955280 | 0.809412 | 1.916770e-50 | -8.615850e-47 |
| Msa0953120 | Msa0955280 | 0.809011 | 2.335787e-50 | -8.615850e-47 |
| Msa0955280 | Msa0990530 | 0.813213 | 2.867896e-51 | -8.615850e-47 |
| Msa0955280 | Msa1121480 | 0.801240 | 9.887226e-49 | -8.615850e-47 |
| Msa0955280 | Msa1121490 | 0.832326 | 1.007531e-55 | -8.615850e-47 |
| Msa0955280 | Msa1158310 | 0.805526 | 1.279493e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0955280 | MtrunA17_Chr6g0471251 | 87.109 | 768 | 78 | 2 | 1 | 747 | 1 | 768 | 0.0 | 1259 |
| Msa0955280 | MtrunA17_Chr2g0325661 | 63.688 | 884 | 174 | 10 | 3 | 747 | 2 | 877 | 0.0 | 965 |
| Msa0955280 | MtrunA17_Chr2g0325351 | 53.920 | 727 | 246 | 12 | 55 | 746 | 16 | 688 | 0.0 | 611 |
| Msa0955280 | MtrunA17_Chr2g0325621 | 53.125 | 704 | 263 | 10 | 55 | 747 | 14 | 661 | 0.0 | 554 |
| Msa0955280 | MtrunA17_Chr2g0325811 | 44.289 | 858 | 332 | 15 | 4 | 745 | 3 | 830 | 1.87e-180 | 537 |
| Msa0955280 | MtrunA17_Chr2g0325611 | 57.904 | 544 | 185 | 4 | 203 | 746 | 91 | 590 | 2.38e-179 | 525 |
| Msa0955280 | MtrunA17_Chr2g0325711 | 44.962 | 794 | 313 | 13 | 57 | 727 | 26 | 818 | 1.96e-178 | 531 |
| Msa0955280 | MtrunA17_Chr2g0280141 | 40.576 | 833 | 312 | 16 | 57 | 746 | 25 | 817 | 4.67e-154 | 468 |
| Msa0955280 | MtrunA17_Chr2g0325361 | 48.876 | 667 | 250 | 7 | 115 | 746 | 467 | 1077 | 1.94e-152 | 471 |
| Msa0955280 | MtrunA17_Chr2g0325361 | 36.059 | 538 | 223 | 12 | 47 | 482 | 2 | 520 | 1.04e-55 | 207 |
| Msa0955280 | MtrunA17_Chr2g0325361 | 37.910 | 335 | 170 | 7 | 164 | 480 | 323 | 637 | 2.55e-29 | 125 |
| Msa0955280 | MtrunA17_Chr2g0325361 | 32.190 | 379 | 187 | 5 | 141 | 466 | 227 | 588 | 2.50e-28 | 122 |
| Msa0955280 | MtrunA17_Chr2g0325361 | 34.524 | 336 | 180 | 6 | 164 | 476 | 365 | 683 | 6.16e-27 | 117 |
| Msa0955280 | MtrunA17_Chr2g0325761 | 52.167 | 600 | 141 | 13 | 3 | 466 | 2 | 591 | 1.92e-147 | 447 |
| Msa0955280 | MtrunA17_Chr2g0325761 | 59.596 | 99 | 39 | 1 | 643 | 741 | 591 | 688 | 6.64e-25 | 110 |
| Msa0955280 | MtrunA17_Chr2g0325321 | 44.083 | 769 | 245 | 10 | 50 | 646 | 6 | 761 | 6.14e-147 | 448 |
| Msa0955280 | MtrunA17_Chr2g0325701 | 45.329 | 653 | 275 | 10 | 5 | 643 | 5 | 589 | 9.26e-141 | 426 |
| Msa0955280 | MtrunA17_Chr5g0434761 | 70.943 | 265 | 77 | 0 | 482 | 746 | 1 | 265 | 5.28e-123 | 368 |
| Msa0955280 | MtrunA17_Chr2g0333341 | 41.413 | 722 | 285 | 15 | 3 | 688 | 2 | 621 | 2.37e-119 | 372 |
| Msa0955280 | MtrunA17_Chr5g0416271 | 43.080 | 578 | 226 | 11 | 74 | 651 | 14 | 488 | 1.03e-115 | 358 |
| Msa0955280 | MtrunA17_Chr2g0325231 | 53.634 | 399 | 172 | 3 | 258 | 656 | 497 | 882 | 4.05e-112 | 360 |
| Msa0955280 | MtrunA17_Chr2g0325231 | 36.895 | 599 | 216 | 17 | 5 | 480 | 6 | 565 | 6.06e-57 | 209 |
| Msa0955280 | MtrunA17_Chr2g0325631 | 69.549 | 266 | 81 | 0 | 482 | 747 | 1 | 266 | 2.37e-107 | 328 |
| Msa0955280 | MtrunA17_Chr2g0325861 | 41.489 | 564 | 252 | 10 | 162 | 665 | 296 | 841 | 1.80e-91 | 305 |
| Msa0955280 | MtrunA17_Chr2g0325861 | 38.889 | 612 | 169 | 14 | 1 | 456 | 1 | 563 | 9.39e-83 | 281 |
| Msa0955280 | MtrunA17_Chr2g0325721 | 41.441 | 555 | 176 | 14 | 3 | 465 | 2 | 499 | 7.63e-88 | 285 |
| Msa0955280 | MtrunA17_Chr2g0325221 | 40.550 | 545 | 233 | 12 | 4 | 466 | 3 | 538 | 7.23e-86 | 286 |
| Msa0955280 | MtrunA17_Chr2g0325221 | 57.843 | 102 | 42 | 1 | 644 | 745 | 599 | 699 | 1.77e-24 | 109 |
| Msa0955280 | MtrunA17_Chr2g0325651 | 45.324 | 417 | 159 | 8 | 6 | 403 | 19 | 385 | 3.67e-84 | 272 |
| Msa0955280 | MtrunA17_Chr2g0325281 | 41.634 | 514 | 188 | 9 | 52 | 466 | 4 | 504 | 2.57e-83 | 276 |
| Msa0955280 | MtrunA17_Chr2g0325281 | 36.676 | 349 | 191 | 6 | 162 | 482 | 255 | 601 | 2.37e-33 | 136 |
| Msa0955280 | MtrunA17_Chr5g0434741 | 47.527 | 364 | 118 | 8 | 3 | 354 | 2 | 304 | 1.58e-77 | 251 |
| Msa0955280 | MtrunA17_Chr2g0325261 | 47.222 | 360 | 130 | 6 | 1 | 355 | 1 | 305 | 1.17e-76 | 249 |
| Msa0955280 | MtrunA17_Chr2g0325341 | 47.222 | 360 | 130 | 6 | 1 | 355 | 1 | 305 | 1.17e-76 | 249 |
| Msa0955280 | MtrunA17_Chr2g0325691 | 41.884 | 499 | 219 | 12 | 5 | 458 | 5 | 477 | 8.17e-67 | 234 |
| Msa0955280 | MtrunA17_Chr2g0325691 | 36.316 | 380 | 170 | 7 | 162 | 482 | 363 | 729 | 4.08e-32 | 133 |
| Msa0955280 | MtrunA17_Chr2g0325691 | 37.919 | 298 | 168 | 4 | 162 | 456 | 307 | 590 | 1.70e-28 | 122 |
| Msa0955280 | MtrunA17_Chr2g0325691 | 36.000 | 300 | 152 | 3 | 222 | 484 | 280 | 576 | 3.56e-25 | 111 |
| Msa0955280 | MtrunA17_Chr2g0325291 | 59.701 | 201 | 81 | 0 | 501 | 701 | 6 | 206 | 1.17e-66 | 219 |
| Msa0955280 | MtrunA17_Chr2g0332961 | 46.441 | 295 | 129 | 4 | 324 | 616 | 86 | 353 | 1.43e-57 | 199 |
| Msa0955280 | MtrunA17_Chr2g0332961 | 31.429 | 280 | 132 | 6 | 87 | 363 | 2 | 224 | 6.26e-18 | 86.3 |
| Msa0955280 | MtrunA17_Chr2g0325331 | 67.742 | 155 | 50 | 0 | 482 | 636 | 1 | 155 | 9.96e-55 | 186 |
| Msa0955280 | MtrunA17_Chr2g0325241 | 41.987 | 312 | 164 | 3 | 266 | 568 | 121 | 424 | 1.47e-54 | 194 |
| Msa0955280 | MtrunA17_Chr2g0325781 | 41.124 | 338 | 155 | 8 | 3 | 333 | 2 | 302 | 5.68e-53 | 186 |
| Msa0955280 | MtrunA17_Chr2g0325741 | 41.543 | 337 | 142 | 10 | 1 | 314 | 1 | 305 | 2.21e-51 | 181 |
| Msa0955280 | MtrunA17_Chr2g0332951 | 45.344 | 247 | 90 | 5 | 401 | 643 | 2 | 207 | 2.19e-49 | 172 |
| Msa0955280 | MtrunA17_Chr2g0325771 | 61.988 | 171 | 55 | 2 | 475 | 643 | 10 | 172 | 6.74e-49 | 170 |
| Msa0955280 | MtrunA17_Chr7g0235901 | 42.769 | 325 | 162 | 5 | 106 | 422 | 1 | 309 | 7.31e-46 | 166 |
| Msa0955280 | MtrunA17_Chr2g0325311 | 69.748 | 119 | 34 | 2 | 630 | 746 | 1 | 119 | 4.24e-44 | 154 |
| Msa0955280 | MtrunA17_Chr3g0140591 | 54.545 | 165 | 74 | 1 | 479 | 643 | 6 | 169 | 9.61e-42 | 150 |
| Msa0955280 | MtrunA17_Chr8g0361651 | 35.821 | 402 | 217 | 7 | 344 | 738 | 32 | 399 | 3.48e-41 | 157 |
| Msa0955280 | MtrunA17_Chr2g0325271 | 62.500 | 104 | 39 | 0 | 643 | 746 | 40 | 143 | 6.30e-36 | 132 |
| Msa0955280 | MtrunA17_Chr2g0325641 | 39.710 | 345 | 140 | 10 | 164 | 477 | 4 | 311 | 1.44e-34 | 134 |
| Msa0955280 | MtrunA17_Chr4g0024061 | 29.215 | 688 | 349 | 18 | 139 | 741 | 14 | 648 | 4.72e-34 | 139 |
| Msa0955280 | MtrunA17_Chr5g0434751 | 41.613 | 310 | 140 | 6 | 175 | 477 | 1 | 276 | 1.68e-30 | 122 |
| Msa0955280 | MtrunA17_Chr2g0325751 | 48.026 | 152 | 67 | 2 | 344 | 490 | 9 | 153 | 1.17e-26 | 106 |
| Msa0955280 | MtrunA17_Chr2g0325751 | 42.478 | 113 | 58 | 1 | 286 | 398 | 7 | 112 | 2.15e-13 | 68.6 |
| Msa0955280 | MtrunA17_Chr2g0325201 | 46.497 | 157 | 76 | 2 | 206 | 354 | 72 | 228 | 3.54e-25 | 104 |
| Msa0955280 | MtrunA17_Chr7g0235921 | 72.165 | 97 | 26 | 1 | 560 | 656 | 1 | 96 | 7.31e-25 | 99.8 |
| Msa0955280 | MtrunA17_Chr4g0044221 | 48.062 | 129 | 61 | 3 | 452 | 578 | 167 | 291 | 4.69e-24 | 103 |
| Msa0955280 | MtrunA17_Chr4g0044221 | 32.432 | 185 | 71 | 2 | 157 | 293 | 12 | 190 | 8.23e-13 | 70.1 |
| Msa0955280 | MtrunA17_Chr2g0325801 | 64.615 | 65 | 23 | 0 | 131 | 195 | 62 | 126 | 1.47e-19 | 85.1 |
| Msa0955280 | MtrunA17_Chr4g0053711 | 27.237 | 257 | 160 | 6 | 512 | 745 | 189 | 441 | 4.12e-17 | 85.5 |
| Msa0955280 | MtrunA17_Chr2g0325791 | 31.551 | 187 | 103 | 2 | 271 | 457 | 22 | 183 | 3.57e-14 | 74.3 |
| Msa0955280 | MtrunA17_Chr2g0325791 | 35.484 | 155 | 83 | 3 | 245 | 399 | 30 | 167 | 4.90e-12 | 67.8 |
| Msa0955280 | MtrunA17_Chr2g0325211 | 38.506 | 174 | 71 | 2 | 267 | 440 | 2 | 139 | 6.13e-14 | 71.2 |
| Msa0955280 | MtrunA17_Chr3g0101121 | 32.370 | 173 | 111 | 3 | 570 | 741 | 189 | 356 | 1.02e-13 | 74.7 |
| Msa0955280 | MtrunA17_Chr3g0140581 | 35.526 | 152 | 53 | 3 | 139 | 245 | 4 | 155 | 1.14e-12 | 66.6 |
| Msa0955280 | MtrunA17_Chr5g0445281 | 25.389 | 193 | 138 | 3 | 554 | 745 | 198 | 385 | 4.41e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0955280 | AT5G27220.1 | 26.772 | 254 | 166 | 7 | 475 | 725 | 835 | 1071 | 4.23e-14 | 77.0 |
| Msa0955280 | AT5G27220.1 | 25.101 | 494 | 314 | 12 | 173 | 640 | 337 | 800 | 1.84e-13 | 75.1 |
| Msa0955280 | AT5G27220.3 | 26.772 | 254 | 166 | 7 | 475 | 725 | 835 | 1071 | 4.23e-14 | 77.0 |
| Msa0955280 | AT5G27220.3 | 25.101 | 494 | 314 | 12 | 173 | 640 | 337 | 800 | 1.84e-13 | 75.1 |
| Msa0955280 | AT5G27220.4 | 25.101 | 494 | 314 | 12 | 173 | 640 | 337 | 800 | 1.18e-13 | 75.5 |
| Msa0955280 | AT5G27220.2 | 25.101 | 494 | 314 | 12 | 173 | 640 | 337 | 800 | 1.18e-13 | 75.5 |
| Msa0955280 | AT5G48385.1 | 24.176 | 273 | 187 | 5 | 493 | 746 | 185 | 456 | 9.86e-11 | 65.5 |
Find 123 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCAATATCTCTCTTTA+TGG | 0.095605 | 6_3:+59248547 | None:intergenic |
| GGAATTAAAAGAGGAGAAAT+TGG | 0.232002 | 6_3:-59247967 | Msa0955280:CDS |
| GATGGGAACTTAAATATTAA+AGG | 0.233504 | 6_3:-59248992 | Msa0955280:CDS |
| CTTCTGCTCTTGTCAATATA+TGG | 0.237594 | 6_3:-59246718 | Msa0955280:CDS |
| TTAGGGCTATCTGTATTTCT+TGG | 0.240950 | 6_3:-59244756 | Msa0955280:three_prime_UTR |
| TGCATCAAGCTCTTTCTCTT+TGG | 0.259439 | 6_3:+59248370 | None:intergenic |
| CAGTTGCTATAGTTAATTAA+TGG | 0.281141 | 6_3:-59249062 | Msa0955280:exon |
| TACAGATCAGTTTCACATTC+TGG | 0.282747 | 6_3:+59245128 | None:intergenic |
| AGATCAAGAAATCGCTAGTT+TGG | 0.283370 | 6_3:-59244951 | Msa0955280:CDS |
| AGATCCATCAAGACTTGTTT+TGG | 0.294687 | 6_3:-59246950 | Msa0955280:CDS |
| ATTTCCAAAACAAGTCTTGA+TGG | 0.297974 | 6_3:+59246946 | None:intergenic |
| GTAGCAGATCCTCAGATTCT+AGG | 0.306498 | 6_3:+59244897 | None:intergenic |
| CCATGATACGGTGACATCTT+TGG | 0.330116 | 6_3:+59248719 | None:intergenic |
| ATATTCTCCGAGTTCAAGTT+TGG | 0.337823 | 6_3:-59248858 | Msa0955280:CDS |
| CTGAAGGAGCCTGAGTTAAC+AGG | 0.340566 | 6_3:-59247684 | Msa0955280:CDS |
| CTTCGACGAATGCGAAGTTT+TGG | 0.343942 | 6_3:-59246683 | Msa0955280:CDS |
| TTATCAAACAACCTCTTAAC+TGG | 0.355392 | 6_3:+59248773 | None:intergenic |
| GCGACTTGAAGGTCATATTA+AGG | 0.356638 | 6_3:-59248246 | Msa0955280:CDS |
| AAACGAACATAAAGGCAAAT+AGG | 0.360837 | 6_3:-59244843 | Msa0955280:exon |
| GTTGAAGCTAGCACGCGATT+TGG | 0.371848 | 6_3:-59246791 | Msa0955280:CDS |
| GAGTCAAAGATGAACGGATT+TGG | 0.374474 | 6_3:-59247714 | Msa0955280:CDS |
| AAAAGTTGCTGAATGTAATC+TGG | 0.380835 | 6_3:-59248402 | Msa0955280:CDS |
| CGTACACAAGGTTTAATAGT+TGG | 0.390627 | 6_3:+59246823 | None:intergenic |
| GCAAGTTGAAGGACGAGAAA+TGG | 0.399180 | 6_3:-59248036 | Msa0955280:CDS |
| GCTGAAGAATGAAGTTGATT+TGG | 0.404140 | 6_3:-59248630 | Msa0955280:CDS |
| CTTTAGTAACTGCTTCCTTT+CGG | 0.405060 | 6_3:+59248307 | None:intergenic |
| TATGGAGTTGTTTGAGACCC+TGG | 0.417090 | 6_3:-59246626 | Msa0955280:CDS |
| CTCATGAGCTTTGTTGTAAA+CGG | 0.418153 | 6_3:-59244616 | Msa0955280:three_prime_UTR |
| GCTCAAATGAAGCGACTTGA+AGG | 0.418905 | 6_3:-59248257 | Msa0955280:CDS |
| TCGAAGGAGAAGTACTTAGA+AGG | 0.422549 | 6_3:-59248173 | Msa0955280:CDS |
| GAAATTTACAACAAAATGTT+GGG | 0.423744 | 6_3:-59248467 | Msa0955280:CDS |
| TGAAATTTACAACAAAATGT+TGG | 0.429530 | 6_3:-59248468 | Msa0955280:CDS |
| TCAAAGTCCTCACAAGAAAC+AGG | 0.437023 | 6_3:+59248920 | None:intergenic |
| GGAACTTAAAGATCATATAA+AGG | 0.439903 | 6_3:-59248078 | Msa0955280:CDS |
| GATCAAGAAATCGCTAGTTT+GGG | 0.440670 | 6_3:-59244950 | Msa0955280:CDS |
| GCAGATTGAAGTACAATTCA+AGG | 0.442680 | 6_3:-59247742 | Msa0955280:CDS |
| AACTAAATCAATTGAAATCA+AGG | 0.448844 | 6_3:-59245089 | Msa0955280:intron |
| TATTCTCCGAGTTCAAGTTT+GGG | 0.456682 | 6_3:-59248857 | Msa0955280:CDS |
| ATGGAGTTGTTTGAGACCCT+GGG | 0.457439 | 6_3:-59246625 | Msa0955280:CDS |
| ATGGGAACTTAAATATTAAA+GGG | 0.459100 | 6_3:-59248991 | Msa0955280:CDS |
| TTCTTACACAGTGGAGTACC+GGG | 0.460980 | 6_3:+59246913 | None:intergenic |
| TCAAAAGAGATGCAACTTGA+AGG | 0.463063 | 6_3:-59248005 | Msa0955280:CDS |
| CTTCTTACACAGTGGAGTAC+CGG | 0.463423 | 6_3:+59246912 | None:intergenic |
| AGAAAATCAGTGCAAAGAAC+GGG | 0.468845 | 6_3:-59248210 | Msa0955280:CDS |
| CTCTTCTTAACAGAAACATC+AGG | 0.468989 | 6_3:+59248818 | None:intergenic |
| TCAATTCATGCTCCTTCACT+CGG | 0.469446 | 6_3:+59247940 | None:intergenic |
| CATGAGCTAAACGAACATAA+AGG | 0.475448 | 6_3:-59244851 | Msa0955280:CDS |
| AGAGAATCAGTTCAAAGTAA+AGG | 0.475996 | 6_3:-59247790 | Msa0955280:CDS |
| AGAACTCGAAGGTCGAGTTA+AGG | 0.480507 | 6_3:-59247910 | Msa0955280:CDS |
| TTCCCTCCTCACATCAGAAT+GGG | 0.485768 | 6_3:+59248943 | None:intergenic |
| ATACTACACTGCCAGTTAAG+AGG | 0.487504 | 6_3:-59248784 | Msa0955280:CDS |
| TTTCTTAACAGAAACGTTCA+AGG | 0.488549 | 6_3:+59248742 | None:intergenic |
| GATCAATTAAGTCATACAAT+TGG | 0.493216 | 6_3:-59247063 | Msa0955280:CDS |
| CATTAATTAACTATAGCAAC+TGG | 0.495247 | 6_3:+59249063 | None:intergenic |
| AAAGGAGTTGGAATTAAAAG+AGG | 0.497111 | 6_3:-59247976 | Msa0955280:CDS |
| TGGTCTTTCCCTGTTAACTC+AGG | 0.501418 | 6_3:+59247675 | None:intergenic |
| CCAAAGATGTCACCGTATCA+TGG | 0.505395 | 6_3:-59248719 | Msa0955280:CDS |
| CGGTACTCCACTGTGTAAGA+AGG | 0.507795 | 6_3:-59246911 | Msa0955280:CDS |
| ATATGCAGTTGCATCTTACA+TGG | 0.508808 | 6_3:-59247088 | Msa0955280:intron |
| TTGATTTGAAATACTCAACT+TGG | 0.512958 | 6_3:+59247856 | None:intergenic |
| ATTCAGATGTGCATATAACT+TGG | 0.514650 | 6_3:-59245191 | Msa0955280:CDS |
| AATTGTTTAACAATTGCAAA+AGG | 0.515248 | 6_3:-59248601 | Msa0955280:CDS |
| GTTGGGAAAAGTTGAGAGCA+AGG | 0.518556 | 6_3:-59248450 | Msa0955280:CDS |
| CAAAACTTCGCATTCGTCGA+AGG | 0.520585 | 6_3:+59246684 | None:intergenic |
| CGAAAGGAAGCAGTTACTAA+AGG | 0.530759 | 6_3:-59248306 | Msa0955280:CDS |
| AAAAGTTGAGAGCAAGGAAG+AGG | 0.533999 | 6_3:-59248444 | Msa0955280:CDS |
| AAGAAAATCAGTGCAAAGAA+CGG | 0.534830 | 6_3:-59248211 | Msa0955280:CDS |
| GTTCCCTCCTCACATCAGAA+TGG | 0.535725 | 6_3:+59248942 | None:intergenic |
| GAAATTGGAAGGCCGAGTGA+AGG | 0.538466 | 6_3:-59247952 | Msa0955280:CDS |
| AAACTTTATTTGCAAAACCC+AGG | 0.546446 | 6_3:+59246608 | None:intergenic |
| TTATGTGTTGGTGATGATGA+TGG | 0.549408 | 6_3:-59249010 | Msa0955280:CDS |
| AACTTTATTTGCAAAACCCA+GGG | 0.549647 | 6_3:+59246609 | None:intergenic |
| CTGATGTTTCTGTTAAGAAG+AGG | 0.551021 | 6_3:-59248817 | Msa0955280:CDS |
| CTTGAACTCGGAGAATATCT+CGG | 0.558533 | 6_3:+59248863 | None:intergenic |
| TGATGTTTCTGTTAAGAAGA+GGG | 0.562050 | 6_3:-59248816 | Msa0955280:CDS |
| CGGAAATATTAGAGTCCGAA+AGG | 0.563570 | 6_3:-59248322 | Msa0955280:CDS |
| GATTGTTCCGCGCACAAACA+TGG | 0.564038 | 6_3:-59244559 | Msa0955280:three_prime_UTR |
| ATCAACTTCATTCTTCAGCA+AGG | 0.564110 | 6_3:+59248634 | None:intergenic |
| TGCTCAGCATAAGACAGCTA+TGG | 0.565711 | 6_3:-59246644 | Msa0955280:CDS |
| GCAATGAAAATATCAATTAG+CGG | 0.566234 | 6_3:-59248350 | Msa0955280:CDS |
| TCAGTTCAAAGTAAAGGAGA+AGG | 0.569881 | 6_3:-59247784 | Msa0955280:CDS |
| TCTTTGCCGTGACCATGATA+CGG | 0.574189 | 6_3:+59248707 | None:intergenic |
| CGGATTTGGCGAACAACTGA+AGG | 0.575797 | 6_3:-59247700 | Msa0955280:CDS |
| TGCAAGACAAGGAAAGTACA+TGG | 0.578415 | 6_3:+59244731 | None:intergenic |
| TTGCTATAGTTAATTAATGG+CGG | 0.581328 | 6_3:-59249059 | Msa0955280:exon |
| TCAGTGCAAAGAACGGGTGG+AGG | 0.581438 | 6_3:-59248204 | Msa0955280:CDS |
| GAGGGAACCTGTTTCTTGTG+AGG | 0.588935 | 6_3:-59248927 | Msa0955280:CDS |
| GAGCAAGGAAGAGGAACTCA+AGG | 0.589693 | 6_3:-59248435 | Msa0955280:CDS |
| GAAGGAGCTCAAGTTAAAAG+AGG | 0.591550 | 6_3:-59247766 | Msa0955280:CDS |
| GGTGGAGGAACTTGAGTCGA+AGG | 0.591983 | 6_3:-59248189 | Msa0955280:CDS |
| TGGTAGAACGAATTTGCAGA+TGG | 0.592195 | 6_3:-59247043 | Msa0955280:CDS |
| CATGTTCCCAAACTTGAACT+CGG | 0.594075 | 6_3:+59248851 | None:intergenic |
| ATCCCATTCTGATGTGAGGA+GGG | 0.598188 | 6_3:-59248945 | Msa0955280:CDS |
| TGAAGGAGCCTGAGTTAACA+GGG | 0.598581 | 6_3:-59247683 | Msa0955280:CDS |
| ACAGTTTGAGTCAATGAAGA+GGG | 0.599438 | 6_3:-59248099 | Msa0955280:CDS |
| GTTCCGCGCACAAACATGGT+TGG | 0.601664 | 6_3:-59244555 | None:intergenic |
| AATATCAATTAGCGGACAAG+CGG | 0.605710 | 6_3:-59248342 | Msa0955280:CDS |
| AGACAACAGCCTAGAATCTG+AGG | 0.608679 | 6_3:-59244906 | Msa0955280:CDS |
| TTAAAAGAGGAGAAATTGGA+AGG | 0.610507 | 6_3:-59247963 | Msa0955280:CDS |
| ATCTGAGGATCTGCTACGAG+AGG | 0.611669 | 6_3:-59244891 | Msa0955280:CDS |
| GGTACTCCACTGTGTAAGAA+GGG | 0.614863 | 6_3:-59246910 | Msa0955280:CDS |
| AACAGTTTGAGTCAATGAAG+AGG | 0.615655 | 6_3:-59248100 | Msa0955280:CDS |
| ATGTCACCGTATCATGGTCA+CGG | 0.615714 | 6_3:-59248713 | Msa0955280:CDS |
| CATCCCATTCTGATGTGAGG+AGG | 0.618781 | 6_3:-59248946 | Msa0955280:CDS |
| GGAGAATATCTCGGTGACAC+AGG | 0.625035 | 6_3:+59248872 | None:intergenic |
| AGCTGTCTTATGCTGAGCAA+CGG | 0.627674 | 6_3:+59246648 | None:intergenic |
| AAACATCCCATTCTGATGTG+AGG | 0.628003 | 6_3:-59248949 | Msa0955280:CDS |
| TTGTTAAATATCTTATCAGG+AGG | 0.629954 | 6_3:-59245237 | Msa0955280:CDS |
| GATAAGCGAAACTTATGTGT+TGG | 0.631254 | 6_3:-59249022 | Msa0955280:CDS |
| TATGTGTTGGTGATGATGAT+GGG | 0.631849 | 6_3:-59249009 | Msa0955280:CDS |
| AATTAACTATAGCAACTGGA+AGG | 0.637726 | 6_3:+59249067 | None:intergenic |
| GAGCTTGAGTCAAAGATGAA+CGG | 0.638322 | 6_3:-59247720 | Msa0955280:CDS |
| AAATCAGTGCAAAGAACGGG+TGG | 0.644245 | 6_3:-59248207 | Msa0955280:CDS |
| ACGACAAGCAATTTGAAGCA+CGG | 0.646191 | 6_3:-59247833 | Msa0955280:CDS |
| GTTCTTCTAACAGATAGATG+TGG | 0.646254 | 6_3:+59246860 | None:intergenic |
| TAAAGGGCTCAATTCATGTG+AGG | 0.658931 | 6_3:-59248975 | Msa0955280:CDS |
| ACTTAAAGATCATATAAAGG+AGG | 0.666678 | 6_3:-59248075 | Msa0955280:CDS |
| TTGAAAGCAGAAGAACTCGA+AGG | 0.687468 | 6_3:-59247921 | Msa0955280:CDS |
| TCTTACACAGTGGAGTACCG+GGG | 0.690858 | 6_3:+59246914 | None:intergenic |
| GTACCAACCATGTTTGTGCG+CGG | 0.700406 | 6_3:+59244552 | None:intergenic |
| TTGGAAATAATACAGAACCC+CGG | 0.701523 | 6_3:-59246931 | Msa0955280:CDS |
| AATCACGAAACTCATGAGCG+CGG | 0.726473 | 6_3:+59244578 | None:intergenic |
| ACAAGCAATTTGAAGCACGG+TGG | 0.738498 | 6_3:-59247830 | Msa0955280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTAAAATTATTGACTT+TGG | + | chr6_3:59248172-59248191 | None:intergenic | 10.0% |
| !!! | TATGTTAATTTAGAATGTTT+TGG | - | chr6_3:59247119-59247138 | Msa0955280:intron | 15.0% |
| !!! | TTTACTCATTTTATCATTTA+TGG | - | chr6_3:59247317-59247336 | Msa0955280:intron | 15.0% |
| !!! | ATTTTGTTAAATATCTTATC+AGG | - | chr6_3:59248460-59248479 | Msa0955280:CDS | 15.0% |
| !!! | ATTTTTTGCTTTCAATTTTA+TGG | - | chr6_3:59248991-59249010 | Msa0955280:CDS | 15.0% |
| !! | ATGGGAACTTAAATATTAAA+GGG | - | chr6_3:59244709-59244728 | Msa0955280:three_prime_UTR | 20.0% |
| !! | AATTGTTTAACAATTGCAAA+AGG | - | chr6_3:59245099-59245118 | Msa0955280:CDS | 20.0% |
| !! | TGAAATTTACAACAAAATGT+TGG | - | chr6_3:59245232-59245251 | Msa0955280:CDS | 20.0% |
| !! | GAAATTTACAACAAAATGTT+GGG | - | chr6_3:59245233-59245252 | Msa0955280:CDS | 20.0% |
| !!! | TATCTTCGTTTATTTAGTTT+TGG | - | chr6_3:59246400-59246419 | Msa0955280:intron | 20.0% |
| !! | TTTCCTAGATTGAAATTTAT+GGG | + | chr6_3:59246482-59246501 | None:intergenic | 20.0% |
| !! | ATTTCCTAGATTGAAATTTA+TGG | + | chr6_3:59246483-59246502 | None:intergenic | 20.0% |
| !! | AGAGAATACTAAAAATTCTT+CGG | - | chr6_3:59246945-59246964 | Msa0955280:CDS | 20.0% |
| !! | TTTATCATTTATGGTATATG+TGG | - | chr6_3:59247326-59247345 | Msa0955280:intron | 20.0% |
| !! | TTATCATTTATGGTATATGT+GGG | - | chr6_3:59247327-59247346 | Msa0955280:intron | 20.0% |
| !!! | TGTTTTTCTCAAATAATTAG+CGG | + | chr6_3:59247585-59247604 | None:intergenic | 20.0% |
| !!! | TCATTTCAGAGATTTATTTT+GGG | + | chr6_3:59247845-59247864 | None:intergenic | 20.0% |
| !!! | TTCATTTCAGAGATTTATTT+TGG | + | chr6_3:59247846-59247865 | None:intergenic | 20.0% |
| !! | AAAAAAAAGGAATCAGTTTA+AGG | - | chr6_3:59248103-59248122 | Msa0955280:CDS | 20.0% |
| !! | ATGAATCCTTTCTATAAAAT+AGG | - | chr6_3:59248126-59248145 | Msa0955280:CDS | 20.0% |
| !! | ATTATAAGTAAAATCTTTGC+AGG | - | chr6_3:59248188-59248207 | Msa0955280:CDS | 20.0% |
| !! | AACTAAATCAATTGAAATCA+AGG | - | chr6_3:59248611-59248630 | Msa0955280:CDS | 20.0% |
| ! | CATTAATTAACTATAGCAAC+TGG | + | chr6_3:59244640-59244659 | None:intergenic | 25.0% |
| ! | CAGTTGCTATAGTTAATTAA+TGG | - | chr6_3:59244638-59244657 | Msa0955280:three_prime_UTR | 25.0% |
| ! | TTGCTATAGTTAATTAATGG+CGG | - | chr6_3:59244641-59244660 | Msa0955280:three_prime_UTR | 25.0% |
| ! | GATGGGAACTTAAATATTAA+AGG | - | chr6_3:59244708-59244727 | Msa0955280:three_prime_UTR | 25.0% |
| ! | TTCTTCAATATCTCTCTTTA+TGG | + | chr6_3:59245156-59245175 | None:intergenic | 25.0% |
| !! | ATTACATTCAGCAACTTTTT+GGG | + | chr6_3:59245297-59245316 | None:intergenic | 25.0% |
| ! | GCAATGAAAATATCAATTAG+CGG | - | chr6_3:59245350-59245369 | Msa0955280:intron | 25.0% |
| ! | GGAACTTAAAGATCATATAA+AGG | - | chr6_3:59245622-59245641 | Msa0955280:intron | 25.0% |
| ! | ACTTAAAGATCATATAAAGG+AGG | - | chr6_3:59245625-59245644 | Msa0955280:intron | 25.0% |
| !! | TCAAAAAATAAGCAAGTTGA+AGG | - | chr6_3:59245653-59245672 | Msa0955280:intron | 25.0% |
| !!! | TTAATTCCAACTCCTTTTTT+TGG | + | chr6_3:59245721-59245740 | None:intergenic | 25.0% |
| ! | TGAGTCAAAAAATAAGCATT+TGG | - | chr6_3:59245817-59245836 | Msa0955280:intron | 25.0% |
| !! | TTGATTTGAAATACTCAACT+TGG | + | chr6_3:59245847-59245866 | None:intergenic | 25.0% |
| !!! | TATGTTTTTTTAACGCTTCA+TGG | + | chr6_3:59246048-59246067 | None:intergenic | 25.0% |
| ! | GTTAAAAAAACATATTGACG+AGG | - | chr6_3:59246054-59246073 | Msa0955280:intron | 25.0% |
| ! | GAGATTCATAAAATGTTCAA+GGG | + | chr6_3:59246207-59246226 | None:intergenic | 25.0% |
| ! | AGAGATTCATAAAATGTTCA+AGG | + | chr6_3:59246208-59246227 | None:intergenic | 25.0% |
| ! | GATCAATTAAGTCATACAAT+TGG | - | chr6_3:59246637-59246656 | Msa0955280:CDS | 25.0% |
| ! | TACCAAAGCATAAAGATAAA+AGG | + | chr6_3:59247163-59247182 | None:intergenic | 25.0% |
| !! | TTAGTTAGTTGGATACATTT+TGG | - | chr6_3:59247476-59247495 | Msa0955280:intron | 25.0% |
| !!! | GATTTATTTTGGGTTATAGT+TGG | + | chr6_3:59247835-59247854 | None:intergenic | 25.0% |
| !!! | ATAAATCTCTGAAATGAATG+TGG | - | chr6_3:59247848-59247867 | Msa0955280:CDS | 25.0% |
| ! | CTGAAGCAGTATAAAAAAAA+AGG | - | chr6_3:59248090-59248109 | Msa0955280:CDS | 25.0% |
| !! | AGTTGTCCTATTTTATAGAA+AGG | + | chr6_3:59248135-59248154 | None:intergenic | 25.0% |
| !!! | TTATGTCTGTTTACTTTTTC+TGG | - | chr6_3:59248400-59248419 | Msa0955280:CDS | 25.0% |
| ! | GATATTTAACAAAATCTGCA+AGG | + | chr6_3:59248455-59248474 | None:intergenic | 25.0% |
| ! | TTGTTAAATATCTTATCAGG+AGG | - | chr6_3:59248463-59248482 | Msa0955280:CDS | 25.0% |
| !!! | TTGATTTAGTTTTCTCACAA+CGG | + | chr6_3:59248602-59248621 | None:intergenic | 25.0% |
| ! | TAAGTTATGACTATCATGAT+GGG | + | chr6_3:59248696-59248715 | None:intergenic | 25.0% |
| ! | TTAAGTTATGACTATCATGA+TGG | + | chr6_3:59248697-59248716 | None:intergenic | 25.0% |
| ! | AATGTAAAGAAATGTGGTAA+TGG | - | chr6_3:59248902-59248921 | Msa0955280:CDS | 25.0% |
| AATTAACTATAGCAACTGGA+AGG | + | chr6_3:59244636-59244655 | None:intergenic | 30.0% | |
| !!! | TTAATTAATGGCGGATTTTG+AGG | - | chr6_3:59244650-59244669 | Msa0955280:three_prime_UTR | 30.0% |
| ! | TGATGTTTCTGTTAAGAAGA+GGG | - | chr6_3:59244884-59244903 | Msa0955280:CDS | 30.0% |
| TTATCAAACAACCTCTTAAC+TGG | + | chr6_3:59244930-59244949 | None:intergenic | 30.0% | |
| TTTCTTAACAGAAACGTTCA+AGG | + | chr6_3:59244961-59244980 | None:intergenic | 30.0% | |
| ! | GATTACATTCAGCAACTTTT+TGG | + | chr6_3:59245298-59245317 | None:intergenic | 30.0% |
| AAAAGTTGCTGAATGTAATC+TGG | - | chr6_3:59245298-59245317 | Msa0955280:intron | 30.0% | |
| AAGAAAATCAGTGCAAAGAA+CGG | - | chr6_3:59245489-59245508 | Msa0955280:intron | 30.0% | |
| AAAGGAGTTGGAATTAAAAG+AGG | - | chr6_3:59245724-59245743 | Msa0955280:intron | 30.0% | |
| GGAATTAAAAGAGGAGAAAT+TGG | - | chr6_3:59245733-59245752 | Msa0955280:intron | 30.0% | |
| TTAAAAGAGGAGAAATTGGA+AGG | - | chr6_3:59245737-59245756 | Msa0955280:intron | 30.0% | |
| AGAGAATCAGTTCAAAGTAA+AGG | - | chr6_3:59245910-59245929 | Msa0955280:intron | 30.0% | |
| GTATAATTAAACCTTAGCCA+TGG | + | chr6_3:59246259-59246278 | None:intergenic | 30.0% | |
| TCACCCATAAATTTCAATCT+AGG | - | chr6_3:59246476-59246495 | Msa0955280:intron | 30.0% | |
| CGTTAAATGAAGGAAACAAT+AGG | + | chr6_3:59246543-59246562 | None:intergenic | 30.0% | |
| TATGAGGATGCTAAAATATC+TGG | - | chr6_3:59246576-59246595 | Msa0955280:intron | 30.0% | |
| ATTTCCAAAACAAGTCTTGA+TGG | + | chr6_3:59246757-59246776 | None:intergenic | 30.0% | |
| ! | AACTTTATTTGCAAAACCCA+GGG | + | chr6_3:59247094-59247113 | None:intergenic | 30.0% |
| ! | AAACTTTATTTGCAAAACCC+AGG | + | chr6_3:59247095-59247114 | None:intergenic | 30.0% |
| ! | GGTTTTGCAAATAAAGTTTC+TGG | - | chr6_3:59247096-59247115 | Msa0955280:intron | 30.0% |
| CAAAGCATAAAGATAAAAGG+AGG | + | chr6_3:59247160-59247179 | None:intergenic | 30.0% | |
| ! | CTCCTTTTATCTTTATGCTT+TGG | - | chr6_3:59247158-59247177 | Msa0955280:intron | 30.0% |
| GTAAAACCACATTAGTTAGT+TGG | - | chr6_3:59247465-59247484 | Msa0955280:intron | 30.0% | |
| ATGTATCCAACTAACTAATG+TGG | + | chr6_3:59247474-59247493 | None:intergenic | 30.0% | |
| AATATGATTCAGATATGCTC+TGG | + | chr6_3:59247755-59247774 | None:intergenic | 30.0% | |
| AGAGTTCAATGAAACATACT+AGG | + | chr6_3:59247778-59247797 | None:intergenic | 30.0% | |
| TCTTTGCAGGATATATACAA+AGG | - | chr6_3:59248201-59248220 | Msa0955280:CDS | 30.0% | |
| ATATTCCAAGCATTAACATG+AGG | + | chr6_3:59248339-59248358 | None:intergenic | 30.0% | |
| TAACAAAAAACTGAGCAGAT+TGG | + | chr6_3:59248367-59248386 | None:intergenic | 30.0% | |
| ATTCAGATGTGCATATAACT+TGG | - | chr6_3:59248509-59248528 | Msa0955280:CDS | 30.0% | |
| ATTACTATGAACTTGAACTC+AGG | - | chr6_3:59248716-59248735 | Msa0955280:CDS | 30.0% | |
| AAACGAACATAAAGGCAAAT+AGG | - | chr6_3:59248857-59248876 | Msa0955280:CDS | 30.0% | |
| CTGCTTAATGTAAAGAAATG+TGG | - | chr6_3:59248896-59248915 | Msa0955280:CDS | 30.0% | |
| !! | ACCTACTTCTACTTTTGTTA+GGG | - | chr6_3:59248927-59248946 | Msa0955280:CDS | 30.0% |
| AAAGCAAAAAATGCAAGACA+AGG | + | chr6_3:59248983-59249002 | None:intergenic | 30.0% | |
| CAACTGGAAGGAAAAATCTT+GGG | + | chr6_3:59244624-59244643 | None:intergenic | 35.0% | |
| GATAAGCGAAACTTATGTGT+TGG | - | chr6_3:59244678-59244697 | Msa0955280:three_prime_UTR | 35.0% | |
| !! | TTATGTGTTGGTGATGATGA+TGG | - | chr6_3:59244690-59244709 | Msa0955280:three_prime_UTR | 35.0% |
| !! | TATGTGTTGGTGATGATGAT+GGG | - | chr6_3:59244691-59244710 | Msa0955280:three_prime_UTR | 35.0% |
| ! | ATATTCTCCGAGTTCAAGTT+TGG | - | chr6_3:59244842-59244861 | Msa0955280:exon | 35.0% |
| ! | TATTCTCCGAGTTCAAGTTT+GGG | - | chr6_3:59244843-59244862 | Msa0955280:exon | 35.0% |
| CTCTTCTTAACAGAAACATC+AGG | + | chr6_3:59244885-59244904 | None:intergenic | 35.0% | |
| ! | CTGATGTTTCTGTTAAGAAG+AGG | - | chr6_3:59244883-59244902 | Msa0955280:CDS | 35.0% |
| ATCAACTTCATTCTTCAGCA+AGG | + | chr6_3:59245069-59245088 | None:intergenic | 35.0% | |
| ! | GCTGAAGAATGAAGTTGATT+TGG | - | chr6_3:59245070-59245089 | Msa0955280:intron | 35.0% |
| ! | AATATCAATTAGCGGACAAG+CGG | - | chr6_3:59245358-59245377 | Msa0955280:intron | 35.0% |
| CTTTAGTAACTGCTTCCTTT+CGG | + | chr6_3:59245396-59245415 | None:intergenic | 35.0% | |
| AGAAAATCAGTGCAAAGAAC+GGG | - | chr6_3:59245490-59245509 | Msa0955280:intron | 35.0% | |
| AACAGTTTGAGTCAATGAAG+AGG | - | chr6_3:59245600-59245619 | Msa0955280:intron | 35.0% | |
| ACAGTTTGAGTCAATGAAGA+GGG | - | chr6_3:59245601-59245620 | Msa0955280:intron | 35.0% | |
| TCAAAAGAGATGCAACTTGA+AGG | - | chr6_3:59245695-59245714 | Msa0955280:intron | 35.0% | |
| TCAGTTCAAAGTAAAGGAGA+AGG | - | chr6_3:59245916-59245935 | Msa0955280:intron | 35.0% | |
| GCAGATTGAAGTACAATTCA+AGG | - | chr6_3:59245958-59245977 | Msa0955280:intron | 35.0% | |
| ! | AACTCTTGCGTTTTTATCCA+TGG | - | chr6_3:59246239-59246258 | Msa0955280:intron | 35.0% |
| TGCACATACTTGCATATACT+TGG | + | chr6_3:59246337-59246356 | None:intergenic | 35.0% | |
| !! | ATCGAAGCATCGTTAAATGA+AGG | + | chr6_3:59246553-59246572 | None:intergenic | 35.0% |
| ATATGCAGTTGCATCTTACA+TGG | - | chr6_3:59246612-59246631 | Msa0955280:CDS | 35.0% | |
| !! | AGATCCATCAAGACTTGTTT+TGG | - | chr6_3:59246750-59246769 | Msa0955280:CDS | 35.0% |
| TTGGAAATAATACAGAACCC+CGG | - | chr6_3:59246769-59246788 | Msa0955280:CDS | 35.0% | |
| GTTCTTCTAACAGATAGATG+TGG | + | chr6_3:59246843-59246862 | None:intergenic | 35.0% | |
| CGTACACAAGGTTTAATAGT+TGG | + | chr6_3:59246880-59246899 | None:intergenic | 35.0% | |
| AAAAATTCTTCGGCTGTTCT+TGG | - | chr6_3:59246955-59246974 | Msa0955280:CDS | 35.0% | |
| CTTCTGCTCTTGTCAATATA+TGG | - | chr6_3:59246982-59247001 | Msa0955280:CDS | 35.0% | |
| TCAATGTCTTCTTTGCAGTT+AGG | - | chr6_3:59247215-59247234 | Msa0955280:intron | 35.0% | |
| TCTTCTTTGCAGTTAGGATA+TGG | - | chr6_3:59247221-59247240 | Msa0955280:intron | 35.0% | |
| ! | TAGGATATGGTTGCTTGTTA+TGG | - | chr6_3:59247234-59247253 | Msa0955280:intron | 35.0% |
| ATTGAACCCTATCTTAGAGT+GGG | + | chr6_3:59247296-59247315 | None:intergenic | 35.0% | |
| AATTGAACCCTATCTTAGAG+TGG | + | chr6_3:59247297-59247316 | None:intergenic | 35.0% | |
| ACAACTAAGAGAATGACAGT+TGG | - | chr6_3:59247432-59247451 | Msa0955280:intron | 35.0% | |
| !! | TGCTTCATAGTTCTAGTCTA+GGG | + | chr6_3:59247531-59247550 | None:intergenic | 35.0% |
| TAGACTAGAACTATGAAGCA+CGG | - | chr6_3:59247531-59247550 | Msa0955280:intron | 35.0% | |
| TATATGTGTTAGTGTCGTGT+CGG | - | chr6_3:59247621-59247640 | Msa0955280:intron | 35.0% | |
| TACAGATCAGTTTCACATTC+TGG | + | chr6_3:59248575-59248594 | None:intergenic | 35.0% | |
| !! | TATCATGATGGGCTATATGT+CGG | + | chr6_3:59248685-59248704 | None:intergenic | 35.0% |
| ATGAACTTGAACTCAGGATA+AGG | - | chr6_3:59248722-59248741 | Msa0955280:CDS | 35.0% | |
| AGATCAAGAAATCGCTAGTT+TGG | - | chr6_3:59248749-59248768 | Msa0955280:CDS | 35.0% | |
| ! | GATCAAGAAATCGCTAGTTT+GGG | - | chr6_3:59248750-59248769 | Msa0955280:CDS | 35.0% |
| CATGAGCTAAACGAACATAA+AGG | - | chr6_3:59248849-59248868 | Msa0955280:CDS | 35.0% | |
| !! | CACCTACTTCTACTTTTGTT+AGG | - | chr6_3:59248926-59248945 | Msa0955280:CDS | 35.0% |
| TTAGGGCTATCTGTATTTCT+TGG | - | chr6_3:59248944-59248963 | Msa0955280:CDS | 35.0% | |
| !! | CTCATGAGCTTTGTTGTAAA+CGG | - | chr6_3:59249084-59249103 | Msa0955280:intron | 35.0% |
| GCAACTGGAAGGAAAAATCT+TGG | + | chr6_3:59244625-59244644 | None:intergenic | 40.0% | |
| TAAAGGGCTCAATTCATGTG+AGG | - | chr6_3:59244725-59244744 | Msa0955280:three_prime_UTR | 40.0% | |
| AAACATCCCATTCTGATGTG+AGG | - | chr6_3:59244751-59244770 | Msa0955280:three_prime_UTR | 40.0% | |
| TCAAAGTCCTCACAAGAAAC+AGG | + | chr6_3:59244783-59244802 | None:intergenic | 40.0% | |
| CTTGAACTCGGAGAATATCT+CGG | + | chr6_3:59244840-59244859 | None:intergenic | 40.0% | |
| CATGTTCCCAAACTTGAACT+CGG | + | chr6_3:59244852-59244871 | None:intergenic | 40.0% | |
| ATACTACACTGCCAGTTAAG+AGG | - | chr6_3:59244916-59244935 | Msa0955280:CDS | 40.0% | |
| AAAAGTTGAGAGCAAGGAAG+AGG | - | chr6_3:59245256-59245275 | Msa0955280:intron | 40.0% | |
| TGCATCAAGCTCTTTCTCTT+TGG | + | chr6_3:59245333-59245352 | None:intergenic | 40.0% | |
| CGGAAATATTAGAGTCCGAA+AGG | - | chr6_3:59245378-59245397 | Msa0955280:intron | 40.0% | |
| CGAAAGGAAGCAGTTACTAA+AGG | - | chr6_3:59245394-59245413 | Msa0955280:intron | 40.0% | |
| GCGACTTGAAGGTCATATTA+AGG | - | chr6_3:59245454-59245473 | Msa0955280:intron | 40.0% | |
| !! | TCGAAGGAGAAGTACTTAGA+AGG | - | chr6_3:59245527-59245546 | Msa0955280:intron | 40.0% |
| GCAACTTGAAGGCCAAAAAA+AGG | - | chr6_3:59245706-59245725 | Msa0955280:intron | 40.0% | |
| TGAAGGCCAAAAAAAGGAGT+TGG | - | chr6_3:59245712-59245731 | Msa0955280:intron | 40.0% | |
| TCAATTCATGCTCCTTCACT+CGG | + | chr6_3:59245763-59245782 | None:intergenic | 40.0% | |
| TTGAAAGCAGAAGAACTCGA+AGG | - | chr6_3:59245779-59245798 | Msa0955280:intron | 40.0% | |
| ! | ACGACAAGCAATTTGAAGCA+CGG | - | chr6_3:59245867-59245886 | Msa0955280:intron | 40.0% |
| GAAGGAGCTCAAGTTAAAAG+AGG | - | chr6_3:59245934-59245953 | Msa0955280:intron | 40.0% | |
| GAGCTTGAGTCAAAGATGAA+CGG | - | chr6_3:59245980-59245999 | Msa0955280:intron | 40.0% | |
| ! | GAGTCAAAGATGAACGGATT+TGG | - | chr6_3:59245986-59246005 | Msa0955280:intron | 40.0% |
| ! | TGCGTTTTTATCCATGGCTA+AGG | - | chr6_3:59246245-59246264 | Msa0955280:intron | 40.0% |
| ACGATGCTTCGATCAATATG+AGG | - | chr6_3:59246560-59246579 | Msa0955280:intron | 40.0% | |
| TGGTAGAACGAATTTGCAGA+TGG | - | chr6_3:59246657-59246676 | Msa0955280:CDS | 40.0% | |
| ! | TTTTCTCCCTTCTTACACAG+TGG | + | chr6_3:59246799-59246818 | None:intergenic | 40.0% |
| !!! | AACGCTTTTTCTCGTACACA+AGG | + | chr6_3:59246892-59246911 | None:intergenic | 40.0% |
| !! | CAATAGCCCACTCTAAGATA+GGG | - | chr6_3:59247287-59247306 | Msa0955280:intron | 40.0% |
| !! | CTTCATAGTTCTAGTCTAGG+GGG | + | chr6_3:59247529-59247548 | None:intergenic | 40.0% |
| !! | GCTTCATAGTTCTAGTCTAG+GGG | + | chr6_3:59247530-59247549 | None:intergenic | 40.0% |
| !! | GTGCTTCATAGTTCTAGTCT+AGG | + | chr6_3:59247532-59247551 | None:intergenic | 40.0% |
| GAGGATTGTCTATGCTTCAT+TGG | - | chr6_3:59247687-59247706 | Msa0955280:CDS | 40.0% | |
| TGAATGAACCAAGAACAGCT+TGG | + | chr6_3:59247807-59247826 | None:intergenic | 40.0% | |
| ! | CTTGTTATGCCTTCATCACT+TGG | + | chr6_3:59247963-59247982 | None:intergenic | 40.0% |
| ! | AAATGGGTGTTGTAGCAAAG+AGG | + | chr6_3:59248009-59248028 | None:intergenic | 40.0% |
| AAGATTTAGCTGTTGCCTGT+TGG | - | chr6_3:59248234-59248253 | Msa0955280:CDS | 40.0% | |
| CAGTTCAATCTTGTACCAAC+AGG | + | chr6_3:59248252-59248271 | None:intergenic | 40.0% | |
| CAGATGTGAGAACTGTTTGA+TGG | + | chr6_3:59248298-59248317 | None:intergenic | 40.0% | |
| GACATCCTCATGTTAATGCT+TGG | - | chr6_3:59248331-59248350 | Msa0955280:CDS | 40.0% | |
| TAACAAAATCTGCAAGGTGC+AGG | + | chr6_3:59248449-59248468 | None:intergenic | 40.0% | |
| GCCCTAACAAAAGTAGAAGT+AGG | + | chr6_3:59248931-59248950 | None:intergenic | 40.0% | |
| ! | TGCAAGACAAGGAAAGTACA+TGG | + | chr6_3:59248972-59248991 | None:intergenic | 40.0% |
| ATCCCATTCTGATGTGAGGA+GGG | - | chr6_3:59244755-59244774 | Msa0955280:three_prime_UTR | 45.0% | |
| TTCCCTCCTCACATCAGAAT+GGG | + | chr6_3:59244760-59244779 | None:intergenic | 45.0% | |
| CCATGATACGGTGACATCTT+TGG | + | chr6_3:59244984-59245003 | None:intergenic | 45.0% | |
| CCAAAGATGTCACCGTATCA+TGG | - | chr6_3:59244981-59245000 | Msa0955280:intron | 45.0% | |
| ATGTCACCGTATCATGGTCA+CGG | - | chr6_3:59244987-59245006 | Msa0955280:intron | 45.0% | |
| TCTTTGCCGTGACCATGATA+CGG | + | chr6_3:59244996-59245015 | None:intergenic | 45.0% | |
| GTTGGGAAAAGTTGAGAGCA+AGG | - | chr6_3:59245250-59245269 | Msa0955280:intron | 45.0% | |
| GCTCAAATGAAGCGACTTGA+AGG | - | chr6_3:59245443-59245462 | Msa0955280:intron | 45.0% | |
| AAATCAGTGCAAAGAACGGG+TGG | - | chr6_3:59245493-59245512 | Msa0955280:intron | 45.0% | |
| ! | GCAAGTTGAAGGACGAGAAA+TGG | - | chr6_3:59245664-59245683 | Msa0955280:intron | 45.0% |
| AGAACTCGAAGGTCGAGTTA+AGG | - | chr6_3:59245790-59245809 | Msa0955280:intron | 45.0% | |
| ! | ACAAGCAATTTGAAGCACGG+TGG | - | chr6_3:59245870-59245889 | Msa0955280:intron | 45.0% |
| TGAAGGAGCCTGAGTTAACA+GGG | - | chr6_3:59246017-59246036 | Msa0955280:intron | 45.0% | |
| TGGTCTTTCCCTGTTAACTC+AGG | + | chr6_3:59246028-59246047 | None:intergenic | 45.0% | |
| ! | TTCTTACACAGTGGAGTACC+GGG | + | chr6_3:59246790-59246809 | None:intergenic | 45.0% |
| CTTCTTACACAGTGGAGTAC+CGG | + | chr6_3:59246791-59246810 | None:intergenic | 45.0% | |
| GGTACTCCACTGTGTAAGAA+GGG | - | chr6_3:59246790-59246809 | Msa0955280:CDS | 45.0% | |
| CAAAACTTCGCATTCGTCGA+AGG | + | chr6_3:59247019-59247038 | None:intergenic | 45.0% | |
| ! | CTTCGACGAATGCGAAGTTT+TGG | - | chr6_3:59247017-59247036 | Msa0955280:CDS | 45.0% |
| AGCTGTCTTATGCTGAGCAA+CGG | + | chr6_3:59247055-59247074 | None:intergenic | 45.0% | |
| TGCTCAGCATAAGACAGCTA+TGG | - | chr6_3:59247056-59247075 | Msa0955280:CDS | 45.0% | |
| ! | TATGGAGTTGTTTGAGACCC+TGG | - | chr6_3:59247074-59247093 | Msa0955280:CDS | 45.0% |
| ! | ATGGAGTTGTTTGAGACCCT+GGG | - | chr6_3:59247075-59247094 | Msa0955280:CDS | 45.0% |
| !! | GCAATAGCCCACTCTAAGAT+AGG | - | chr6_3:59247286-59247305 | Msa0955280:intron | 45.0% |
| ACACGACACATTTCCTACAC+CGG | - | chr6_3:59247650-59247669 | Msa0955280:CDS | 45.0% | |
| CTCTTTCACCAAGCTGTTCT+TGG | - | chr6_3:59247796-59247815 | Msa0955280:CDS | 45.0% | |
| TGCAGAAGACACAGACTCTT+TGG | + | chr6_3:59247921-59247940 | None:intergenic | 45.0% | |
| !! | GATGGGCTATATGTCGGAAA+TGG | + | chr6_3:59248679-59248698 | None:intergenic | 45.0% |
| AGACAACAGCCTAGAATCTG+AGG | - | chr6_3:59248794-59248813 | Msa0955280:CDS | 45.0% | |
| GTAGCAGATCCTCAGATTCT+AGG | + | chr6_3:59248806-59248825 | None:intergenic | 45.0% | |
| AATCACGAAACTCATGAGCG+CGG | + | chr6_3:59249125-59249144 | None:intergenic | 45.0% | |
| CATCCCATTCTGATGTGAGG+AGG | - | chr6_3:59244754-59244773 | Msa0955280:three_prime_UTR | 50.0% | |
| GTTCCCTCCTCACATCAGAA+TGG | + | chr6_3:59244761-59244780 | None:intergenic | 50.0% | |
| ! | GAGGGAACCTGTTTCTTGTG+AGG | - | chr6_3:59244773-59244792 | Msa0955280:intron | 50.0% |
| GGAGAATATCTCGGTGACAC+AGG | + | chr6_3:59244831-59244850 | None:intergenic | 50.0% | |
| GAGCAAGGAAGAGGAACTCA+AGG | - | chr6_3:59245265-59245284 | Msa0955280:intron | 50.0% | |
| GAAATTGGAAGGCCGAGTGA+AGG | - | chr6_3:59245748-59245767 | Msa0955280:intron | 50.0% | |
| CGGATTTGGCGAACAACTGA+AGG | - | chr6_3:59246000-59246019 | Msa0955280:intron | 50.0% | |
| CTGAAGGAGCCTGAGTTAAC+AGG | - | chr6_3:59246016-59246035 | Msa0955280:intron | 50.0% | |
| !! | TCTTACACAGTGGAGTACCG+GGG | + | chr6_3:59246789-59246808 | None:intergenic | 50.0% |
| CGGTACTCCACTGTGTAAGA+AGG | - | chr6_3:59246789-59246808 | Msa0955280:CDS | 50.0% | |
| GTTGAAGCTAGCACGCGATT+TGG | - | chr6_3:59246909-59246928 | Msa0955280:CDS | 50.0% | |
| ! | TGTTAGTGTCGTGTCGGTGT+CGG | - | chr6_3:59247627-59247646 | Msa0955280:intron | 50.0% |
| CACGACACATTTCCTACACC+GGG | - | chr6_3:59247651-59247670 | Msa0955280:CDS | 50.0% | |
| TCTAGCGAGTAGCGGCAAAT+GGG | + | chr6_3:59248025-59248044 | None:intergenic | 50.0% | |
| TGTGCATCTCTAGCGAGTAG+CGG | + | chr6_3:59248033-59248052 | None:intergenic | 50.0% | |
| ATCTGAGGATCTGCTACGAG+AGG | - | chr6_3:59248809-59248828 | Msa0955280:CDS | 50.0% | |
| GATTGTTCCGCGCACAAACA+TGG | - | chr6_3:59249141-59249160 | Msa0955280:five_prime_UTR | 50.0% | |
| TCAGTGCAAAGAACGGGTGG+AGG | - | chr6_3:59245496-59245515 | Msa0955280:intron | 55.0% | |
| GGTGGAGGAACTTGAGTCGA+AGG | - | chr6_3:59245511-59245530 | Msa0955280:intron | 55.0% | |
| CATTAGACGTGTCCCGGTGT+AGG | + | chr6_3:59247666-59247685 | None:intergenic | 55.0% | |
| TCCTCGCATTAGACGTGTCC+CGG | + | chr6_3:59247672-59247691 | None:intergenic | 55.0% | |
| !! | TTGGCTCTGCAGCTGCTACA+CGG | + | chr6_3:59247944-59247963 | None:intergenic | 55.0% |
| GCTGCAGAGCCAAGTGATGA+AGG | - | chr6_3:59247951-59247970 | Msa0955280:CDS | 55.0% | |
| CTCTAGCGAGTAGCGGCAAA+TGG | + | chr6_3:59248026-59248045 | None:intergenic | 55.0% | |
| ACCGGGACACGTCTAATGCG+AGG | - | chr6_3:59247668-59247687 | Msa0955280:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 59244556 | 59249166 | 59244556 | ID=Msa0955280;Name=Msa0955280 |
| chr6_3 | mRNA | 59244556 | 59249166 | 59244556 | ID=Msa0955280-mRNA-1;Parent=Msa0955280;Name=Msa0955280-mRNA-1;_AED=0.08;_eAED=0.08;_QI=79|1|1|1|0.6|0.33|6|249|747 |
| chr6_3 | exon | 59244556 | 59244787 | 59244556 | ID=Msa0955280-mRNA-1:exon:11692;Parent=Msa0955280-mRNA-1 |
| chr6_3 | exon | 59244827 | 59244984 | 59244827 | ID=Msa0955280-mRNA-1:exon:11691;Parent=Msa0955280-mRNA-1 |
| chr6_3 | exon | 59245090 | 59245262 | 59245090 | ID=Msa0955280-mRNA-1:exon:11690;Parent=Msa0955280-mRNA-1 |
| chr6_3 | exon | 59246605 | 59247102 | 59246605 | ID=Msa0955280-mRNA-1:exon:11689;Parent=Msa0955280-mRNA-1 |
| chr6_3 | exon | 59247634 | 59249095 | 59247634 | ID=Msa0955280-mRNA-1:exon:11688;Parent=Msa0955280-mRNA-1 |
| chr6_3 | exon | 59249118 | 59249166 | 59249118 | ID=Msa0955280-mRNA-1:exon:11687;Parent=Msa0955280-mRNA-1 |
| chr6_3 | five_prime_UTR | 59249118 | 59249166 | 59249118 | ID=Msa0955280-mRNA-1:five_prime_utr;Parent=Msa0955280-mRNA-1 |
| chr6_3 | five_prime_UTR | 59249066 | 59249095 | 59249066 | ID=Msa0955280-mRNA-1:five_prime_utr;Parent=Msa0955280-mRNA-1 |
| chr6_3 | CDS | 59247634 | 59249065 | 59247634 | ID=Msa0955280-mRNA-1:cds;Parent=Msa0955280-mRNA-1 |
| chr6_3 | CDS | 59246605 | 59247102 | 59246605 | ID=Msa0955280-mRNA-1:cds;Parent=Msa0955280-mRNA-1 |
| chr6_3 | CDS | 59245090 | 59245262 | 59245090 | ID=Msa0955280-mRNA-1:cds;Parent=Msa0955280-mRNA-1 |
| chr6_3 | CDS | 59244844 | 59244984 | 59244844 | ID=Msa0955280-mRNA-1:cds;Parent=Msa0955280-mRNA-1 |
| chr6_3 | three_prime_UTR | 59244827 | 59244843 | 59244827 | ID=Msa0955280-mRNA-1:three_prime_utr;Parent=Msa0955280-mRNA-1 |
| chr6_3 | three_prime_UTR | 59244556 | 59244787 | 59244556 | ID=Msa0955280-mRNA-1:three_prime_utr;Parent=Msa0955280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
