AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0991110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0991110 MtrunA17_Chr7g0250591 92.727 55 4 0 2 56 117 171 1.07e-28 101
Msa0991110 MtrunA17_Chr7g0268531 92.727 55 4 0 2 56 204 258 7.75e-28 102
Msa0991110 MtrunA17_Chr1g0196181 81.818 55 10 0 2 56 211 265 6.54e-25 95.1
Msa0991110 MtrunA17_Chr2g0321541 66.667 54 18 0 3 56 218 271 2.12e-18 76.6
Msa0991110 MtrunA17_Chr8g0346171 61.818 55 21 0 2 56 253 307 5.66e-18 75.5
Msa0991110 MtrunA17_Chr4g0026251 64.815 54 19 0 3 56 237 290 7.13e-18 75.1
Msa0991110 MtrunA17_Chr7g0266501 65.455 55 19 0 2 56 241 295 1.87e-17 73.9
Msa0991110 MtrunA17_Chr5g0426461 57.143 49 21 0 3 51 118 166 1.27e-12 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0991110 AT4G03100.1 83.636 55 9 0 2 56 222 276 1.28e-24 94.4
Msa0991110 AT5G22400.1 69.091 55 17 0 2 56 259 313 7.74e-19 78.2
Msa0991110 AT2G46710.1 65.455 55 19 0 2 56 247 301 2.48e-18 77.0
Msa0991110 AT3G11490.1 64.815 54 19 0 3 56 236 289 1.51e-17 74.7
Msa0991110 AT1G08340.1 53.704 54 25 0 3 56 146 199 1.02e-15 69.3

Find 94 sgRNAs with CRISPR-Local

Find 521 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAATCAGCTTTGCTTAAT+TGG 0.091752 6_4:+54627520 Msa0991110:CDS
AGTAACATAATAACTATTTA+AGG 0.167258 6_4:-54630923 None:intergenic
TTTGAAGAGGATATGGATTT+TGG 0.188814 6_4:-54621884 None:intergenic
TGGAGAACAATGTTCGAATT+TGG 0.201520 6_4:-54621833 None:intergenic
TAATTGGGCTGTTGATCTTA+TGG 0.232844 6_4:+54627536 Msa0991110:CDS
TCAAAATATTAATGAAAGTT+TGG 0.239282 6_4:-54631001 None:intergenic
CGATATTGTTGAATCCATTA+TGG 0.253676 6_4:+54625769 Msa0991110:five_prime_UTR
GCTTAATTAAAGCATGGTTT+AGG 0.267143 6_4:+54627398 Msa0991110:five_prime_UTR
TTGGATTGGGAAAGTGATTT+TGG 0.276234 6_4:-54621861 None:intergenic
AAGCATACCTGAGTCATATT+TGG 0.278528 6_4:-54627624 None:intergenic
CTTAATTAAAGCATGGTTTA+GGG 0.299820 6_4:+54627399 Msa0991110:five_prime_UTR
TTCTCTTCAGATGTCTTTGT+CGG 0.328998 6_4:-54623931 None:intergenic
GCAGATTTAGTTCAAAGAAT+TGG 0.329574 6_4:+54626237 Msa0991110:five_prime_UTR
AACTGCAGTGTTAGTGTGTT+TGG 0.338672 6_4:+54627061 Msa0991110:intron
AAAGGGCGGTGAAGGTTCTT+TGG 0.340536 6_4:-54621918 None:intergenic
GTGCTCCTTGTGTGGTTGTA+AGG 0.345346 6_4:+54626307 Msa0991110:five_prime_UTR
TGAAGAGGAGTATAACAAAT+TGG 0.355309 6_4:+54627572 Msa0991110:CDS
CTTCCTTCAGGAGTGTTAGA+TGG 0.358229 6_4:+54627424 Msa0991110:five_prime_UTR
GATCTTTCTCTCTTCAAATC+AGG 0.358949 6_4:-54630662 None:intergenic
TTCATGAAGCACTTGGAAAT+AGG 0.380038 6_4:+54630697 Msa0991110:three_prime_UTR
TGAATCAGCTTTGCTTAATT+GGG 0.382771 6_4:+54627521 Msa0991110:CDS
AGCATAATAAATTCAGAAGT+TGG 0.389901 6_4:-54626338 None:intergenic
TGGTTTAGGGAACTTCCTTC+AGG 0.390002 6_4:+54627412 Msa0991110:five_prime_UTR
CATTGGAACTATTTGAGAAC+GGG 0.401409 6_4:-54630974 None:intergenic
TGTTGAATCCATTATGGAAA+AGG 0.404316 6_4:+54625775 Msa0991110:five_prime_UTR
AGGAGATGGGAAGATTGATA+TGG 0.412059 6_4:+54625925 Msa0991110:five_prime_UTR
AAAGAAACCTACTTTAGATA+TGG 0.414269 6_4:-54626004 None:intergenic
TTAAGCAAAGCTGATTCAAC+TGG 0.417940 6_4:-54627516 None:intergenic
ATTGATGTACATTGCTTGGC+TGG 0.424414 6_4:+54627376 Msa0991110:five_prime_UTR
TTAGATGGACAATGGATTTG+AGG 0.430824 6_4:+54623366 Msa0991110:intron
CAATGTTCTTATGATTCAAA+AGG 0.438953 6_4:+54627103 Msa0991110:five_prime_UTR
CACTATTCTGTTACTGATGC+AGG 0.440575 6_4:+54627138 Msa0991110:five_prime_UTR
CAATGTACATCAATGTCAAT+TGG 0.443981 6_4:-54627367 None:intergenic
TAAGATGGATAAACTATTTG+AGG 0.452664 6_4:+54630639 Msa0991110:three_prime_UTR
TTTCCATAACTTAGTTGTGC+AGG 0.453345 6_4:+54624088 Msa0991110:intron
TTGAAAATTTAGATGGACAA+TGG 0.453902 6_4:+54623358 Msa0991110:intron
ATGTATTGCAGGGTTGCAAA+TGG 0.456300 6_4:+54630602 Msa0991110:intron
GTTGTTCACTGATGCTTCGT+TGG 0.462979 6_4:+54621979 Msa0991110:five_prime_UTR
GAAAAGAAAAGGAGGAATCA+AGG 0.464396 6_4:+54622562 Msa0991110:five_prime_UTR
CTGCATCAGTAACAGAATAG+TGG 0.465246 6_4:-54627137 None:intergenic
AGCTTGCTTGAAAGAAAGAC+AGG 0.476529 6_4:+54626419 Msa0991110:five_prime_UTR
ATGAAGGAGGTTGACTCAAA+AGG 0.481217 6_4:+54625905 Msa0991110:five_prime_UTR
TGCAGGACACAGTGAGTAGC+TGG 0.482309 6_4:+54624105 Msa0991110:five_prime_UTR
ATGGATGACAATCAATTTGA+AGG 0.482731 6_4:+54626471 Msa0991110:five_prime_UTR
TTGAGGGAGCAATTGAATAG+TGG 0.488849 6_4:+54627337 Msa0991110:five_prime_UTR
GAAAGAGTTGTAGATTAAGA+TGG 0.491121 6_4:+54630624 Msa0991110:exon
GAAGTTGAAGGAGATGGTCT+TGG 0.495842 6_4:+54625712 Msa0991110:intron
GCAGGAGAGGTTATACTCAC+AGG 0.496188 6_4:+54627156 Msa0991110:five_prime_UTR
TACTCACAGGGGAGGACTAA+AGG 0.502224 6_4:+54627169 Msa0991110:five_prime_UTR
TGACATTGATGTACATTGCT+TGG 0.502418 6_4:+54627372 Msa0991110:five_prime_UTR
GAAATTGACAGGAAAAGAAA+AGG 0.511934 6_4:+54622551 Msa0991110:intron
AATCAATGAAAGGGCGGTGA+AGG 0.514433 6_4:-54621926 None:intergenic
TGCATCAGTAACAGAATAGT+GGG 0.515481 6_4:-54627136 None:intergenic
CAAATTTGAAAACAAAGTAA+TGG 0.515781 6_4:+54626452 Msa0991110:five_prime_UTR
ATCAATCTTCATGAAGCACT+TGG 0.519187 6_4:+54630690 Msa0991110:three_prime_UTR
TGAAGAATGAATCAATGAAA+GGG 0.519197 6_4:-54621935 None:intergenic
GTCATGATCTTAAGAAGAGA+AGG 0.521718 6_4:-54625977 None:intergenic
TCACTTGAACTTAGAGCAAG+TGG 0.523247 6_4:+54626270 Msa0991110:five_prime_UTR
CGGTGAAGAGGAGCATTTGA+GGG 0.524014 6_4:+54627321 Msa0991110:five_prime_UTR
GAGGTTGACTCAAAAGGAGA+TGG 0.527295 6_4:+54625911 Msa0991110:five_prime_UTR
AAAACTAAGATTTGATGAAG+AGG 0.529218 6_4:-54622600 None:intergenic
ACAAGCAGCTTCTGATATGA+TGG 0.532447 6_4:+54623393 Msa0991110:five_prime_UTR
GGATGCTAGAAATATTGCTA+TGG 0.539172 6_4:+54627593 Msa0991110:CDS
ACGGTGAAGAGGAGCATTTG+AGG 0.542330 6_4:+54627320 Msa0991110:five_prime_UTR
GTGCATTCAAGAACTTCCTC+AGG 0.542973 6_4:-54627454 None:intergenic
TTCTGTTACTGATGCAGGAG+AGG 0.546256 6_4:+54627143 Msa0991110:five_prime_UTR
AGCATCAGTGAACAACTTGA+AGG 0.547008 6_4:-54621972 None:intergenic
CTGAAGAATGAATCAATGAA+AGG 0.547297 6_4:-54621936 None:intergenic
CTATACTTGTGCTCCTTGTG+TGG 0.549669 6_4:+54626299 Msa0991110:five_prime_UTR
TTCATTGATTCATTCTTCAG+AGG 0.550011 6_4:+54621939 Msa0991110:five_prime_UTR
ATGGACAATGGATTTGAGGA+TGG 0.554723 6_4:+54623370 Msa0991110:five_prime_UTR
CATATCCTCTTCAAAATCGA+TGG 0.555221 6_4:+54621892 Msa0991110:five_prime_UTR
TGGCTGGCTTAATTAAAGCA+TGG 0.562561 6_4:+54627392 Msa0991110:five_prime_UTR
CAGGAGAGGTTATACTCACA+GGG 0.571632 6_4:+54627157 Msa0991110:five_prime_UTR
TCATTGGAACTATTTGAGAA+CGG 0.573387 6_4:-54630975 None:intergenic
GGAAGATTGATATGGAAGAG+TGG 0.580086 6_4:+54625933 Msa0991110:five_prime_UTR
AAATCTAGAAAACGGTGAAG+AGG 0.586826 6_4:+54627309 Msa0991110:five_prime_UTR
CATACTGAAGTTGAAGGAGA+TGG 0.587037 6_4:+54625706 Msa0991110:intron
GGCTGATGTTGTAGTTGAAG+AGG 0.587676 6_4:+54627557 Msa0991110:CDS
AGTCCATCTAACACTCCTGA+AGG 0.599306 6_4:-54627427 None:intergenic
GAAAAGGAGGAATCAAGGAA+CGG 0.610073 6_4:+54622567 Msa0991110:five_prime_UTR
AGGTTGACTCAAAAGGAGAT+GGG 0.621613 6_4:+54625912 Msa0991110:five_prime_UTR
CCAGTTAGCTAAAATATGAG+AGG 0.622380 6_4:-54624171 None:intergenic
ATTGACAGGAAAAGAAAAGG+AGG 0.628163 6_4:+54622554 Msa0991110:intron
GATTTGATGAAGAGGATGAG+AGG 0.642675 6_4:-54622592 None:intergenic
TGATGCCTTACAACCACACA+AGG 0.662898 6_4:-54626312 None:intergenic
AGAGGTTATACTCACAGGGG+AGG 0.676395 6_4:+54627161 Msa0991110:five_prime_UTR
CAAATTGCAGCACAACTACG+AGG 0.681142 6_4:+54630844 Msa0991110:three_prime_UTR
GTTAGATGGACTTTCACCTG+AGG 0.686418 6_4:+54627438 Msa0991110:five_prime_UTR
AAATTGCAGCACAACTACGA+GGG 0.692945 6_4:+54630845 Msa0991110:three_prime_UTR
TGATGGCAAGCAGTCAACAG+AGG 0.701292 6_4:+54623410 Msa0991110:five_prime_UTR
AGAATGAATCAATGAAAGGG+CGG 0.702517 6_4:-54621932 None:intergenic
GCATCAGTAACAGAATAGTG+GGG 0.751385 6_4:-54627135 None:intergenic
AGGAGAGGTTATACTCACAG+GGG 0.789501 6_4:+54627158 Msa0991110:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAATGTTTATTGTATA+TGG + chr6_4:54622056-54622075 Msa0991110:intron 10.0%
!!! AATTTTTTTCATCTTTAAAA+GGG - chr6_4:54624140-54624159 None:intergenic 10.0%
!!! GGAAAATTTTAATTATAAAA+CGG - chr6_4:54626974-54626993 None:intergenic 10.0%
!! TATGTAAAATATAATAATCA+TGG - chr6_4:54629404-54629423 None:intergenic 10.0%
!!! AAAAAAAAGGTATATAATAT+GGG - chr6_4:54630162-54630181 None:intergenic 10.0%
!!! TAAAAAAAAGGTATATAATA+TGG - chr6_4:54630163-54630182 None:intergenic 10.0%
!!! ATTATGTTACTTTTTTTTTT+TGG + chr6_4:54630935-54630954 Msa0991110:three_prime_UTR 10.0%
!! AATGTTTAATTGGAAAAATT+CGG + chr6_4:54622255-54622274 Msa0991110:intron 15.0%
!!! TATTTTAGTAAATTGGTAAT+TGG + chr6_4:54622383-54622402 Msa0991110:intron 15.0%
!! AGTGATAAATCATATTTAAA+TGG + chr6_4:54623053-54623072 Msa0991110:intron 15.0%
!!! AAGTATCTTTTGATTTTTTT+TGG + chr6_4:54623233-54623252 Msa0991110:intron 15.0%
!! TGTAAATAACAAATAAGTAA+TGG - chr6_4:54623326-54623345 None:intergenic 15.0%
!!! CATCTAAATTTTCAATAAAA+GGG - chr6_4:54623353-54623372 None:intergenic 15.0%
!!! GAATTTTTTTCATCTTTAAA+AGG - chr6_4:54624141-54624160 None:intergenic 15.0%
!! TAAAGATGAAAAAAATTCAA+AGG + chr6_4:54624143-54624162 Msa0991110:five_prime_UTR 15.0%
!! AGTAATAAAACATCAAAATT+TGG + chr6_4:54625297-54625316 Msa0991110:intron 15.0%
!!! TTTTTAATTAACGAATTTTC+AGG + chr6_4:54627267-54627286 Msa0991110:intron 15.0%
!!! TTTTGTATAAATCTAGAAAA+CGG + chr6_4:54627301-54627320 Msa0991110:five_prime_UTR 15.0%
!!! AATTTGAACTAAATATTTTG+CGG - chr6_4:54628096-54628115 None:intergenic 15.0%
!! GTAGATAAATTTATTTATCT+TGG - chr6_4:54628972-54628991 None:intergenic 15.0%
!! ATAAAAATTCATTTGTCTAA+TGG + chr6_4:54629212-54629231 Msa0991110:intron 15.0%
!! AATCTTTATGTGAAAAAAAA+GGG + chr6_4:54629925-54629944 Msa0991110:intron 15.0%
!!! AAAAAAAGGTATATAATATG+GGG - chr6_4:54630161-54630180 None:intergenic 15.0%
!! TTGAAAATATAGTAAAGATT+GGG - chr6_4:54630186-54630205 None:intergenic 15.0%
!! AAAAACTAAGAAAATGTTTA+TGG + chr6_4:54630375-54630394 Msa0991110:intron 15.0%
!! TTGTAAAGTAAAAAAAGATA+AGG - chr6_4:54630541-54630560 None:intergenic 15.0%
!! TTAATAATTTCAAATGTTTC+AGG + chr6_4:54630815-54630834 Msa0991110:intron 15.0%
!!! ATAATGAGATAAAAAACTTT+TGG + chr6_4:54630875-54630894 Msa0991110:three_prime_UTR 15.0%
!! AGTAACATAATAACTATTTA+AGG - chr6_4:54630926-54630945 None:intergenic 15.0%
!! TCAAAATATTAATGAAAGTT+TGG - chr6_4:54631004-54631023 None:intergenic 15.0%
!! TTCTGAATAGATGAATTAAT+AGG + chr6_4:54622080-54622099 Msa0991110:intron 20.0%
!! ATGTTTAATTGGAAAAATTC+GGG + chr6_4:54622256-54622275 Msa0991110:intron 20.0%
!!! TCTTATTTAGTTTAGTAGAT+TGG - chr6_4:54622320-54622339 None:intergenic 20.0%
!!! GGAGTGTTATTATATAAAAA+TGG + chr6_4:54622409-54622428 Msa0991110:intron 20.0%
!! TTATATAAAAATGGTGAGAA+AGG + chr6_4:54622418-54622437 Msa0991110:intron 20.0%
!! TATATAAAAATGGTGAGAAA+GGG + chr6_4:54622419-54622438 Msa0991110:intron 20.0%
!! TAATAGATTGATGAAAAGAT+GGG - chr6_4:54622691-54622710 None:intergenic 20.0%
!!! AGAGTTGTTTTTGTTATTTT+AGG + chr6_4:54622859-54622878 Msa0991110:intron 20.0%
!!! GAGTTGTTTTTGTTATTTTA+GGG + chr6_4:54622860-54622879 Msa0991110:intron 20.0%
!!! AGTTGTTTTTGTTATTTTAG+GGG + chr6_4:54622861-54622880 Msa0991110:intron 20.0%
!! AATATAATGTCTGAAGAATT+TGG + chr6_4:54623027-54623046 Msa0991110:intron 20.0%
!!! AAAATTTATGGTGGAAATAA+TGG + chr6_4:54623204-54623223 Msa0991110:intron 20.0%
!!! AAATTTATGGTGGAAATAAT+GGG + chr6_4:54623205-54623224 Msa0991110:intron 20.0%
!!! CCATCTAAATTTTCAATAAA+AGG - chr6_4:54623354-54623373 None:intergenic 20.0%
!!! CCTTTTATTGAAAATTTAGA+TGG + chr6_4:54623351-54623370 Msa0991110:intron 20.0%
!! ATAAAACCCTAAATAAAAGA+GGG - chr6_4:54623652-54623671 None:intergenic 20.0%
!! GAACTGATAATAACTAAATT+GGG - chr6_4:54623748-54623767 None:intergenic 20.0%
!! TGAACTGATAATAACTAAAT+TGG - chr6_4:54623749-54623768 None:intergenic 20.0%
!! ACTACTTAATAGTACTTAAT+TGG + chr6_4:54624224-54624243 Msa0991110:intron 20.0%
!! TAATTGATTGTATAACTCTA+AGG - chr6_4:54624442-54624461 None:intergenic 20.0%
!! TAGGGAGATAAATTATAATT+TGG - chr6_4:54624540-54624559 None:intergenic 20.0%
!! AATTATAATTTATCTCCCTA+AGG + chr6_4:54624540-54624559 Msa0991110:intron 20.0%
!!! AACTTATTTTATAAGGTCTT+GGG - chr6_4:54624889-54624908 None:intergenic 20.0%
!!! TAACTTATTTTATAAGGTCT+TGG - chr6_4:54624890-54624909 None:intergenic 20.0%
!!! GGTTCTTAACTTATTTTATA+AGG - chr6_4:54624896-54624915 None:intergenic 20.0%
!!! TATTTTTATGTCAATGCATT+GGG - chr6_4:54624917-54624936 None:intergenic 20.0%
!!! TTATTTTTATGTCAATGCAT+TGG - chr6_4:54624918-54624937 None:intergenic 20.0%
!!! GTTTTCTGATAAATGTAAAA+TGG - chr6_4:54625263-54625282 None:intergenic 20.0%
!! GATAAAGATTGACATAATTA+TGG + chr6_4:54625457-54625476 Msa0991110:intron 20.0%
!!! ATTTTGATGTCACTTTTTAT+AGG - chr6_4:54625531-54625550 None:intergenic 20.0%
!!! TCTAAATGGTCTTATATTTA+AGG + chr6_4:54625552-54625571 Msa0991110:intron 20.0%
!! CAAATTTGAAAACAAAGTAA+TGG + chr6_4:54626452-54626471 Msa0991110:five_prime_UTR 20.0%
!! TGGATAAAAAATTAGATTTG+TGG + chr6_4:54626571-54626590 Msa0991110:intron 20.0%
!!! GTTAAAAGAAAGATTTGTTT+TGG + chr6_4:54626711-54626730 Msa0991110:intron 20.0%
!!! AATAATGATTTGATTGCTTT+TGG - chr6_4:54626995-54627014 None:intergenic 20.0%
!! AATTAAAAAGTGATAAAAGC+AGG - chr6_4:54627256-54627275 None:intergenic 20.0%
!!! TCTTTTAAATTATCTTCTAC+AGG - chr6_4:54627709-54627728 None:intergenic 20.0%
!! GAGGTTATTATTTAAACAAA+AGG + chr6_4:54627959-54627978 Msa0991110:intron 20.0%
!!! TTTCAAAGTTGTTTAAAGTT+TGG + chr6_4:54628499-54628518 Msa0991110:intron 20.0%
!!! TTCAAAGTTGTTTAAAGTTT+GGG + chr6_4:54628500-54628519 Msa0991110:intron 20.0%
!! TACTTTATGAATACTAATCA+TGG - chr6_4:54628656-54628675 None:intergenic 20.0%
!! GTTATATGTGCTTATTATAT+AGG - chr6_4:54628746-54628765 None:intergenic 20.0%
!! AATTTATTTATCTTGGTTGT+TGG - chr6_4:54628965-54628984 None:intergenic 20.0%
!!! AAGTATTTTCATTTTCATAG+TGG + chr6_4:54629434-54629453 Msa0991110:intron 20.0%
!! TCAATGAAATCTAAGAAATT+TGG + chr6_4:54629864-54629883 Msa0991110:intron 20.0%
!! CAATGAAATCTAAGAAATTT+GGG + chr6_4:54629865-54629884 Msa0991110:intron 20.0%
!! AATGAAATCTAAGAAATTTG+GGG + chr6_4:54629866-54629885 Msa0991110:intron 20.0%
!! CAATCTTTATGTGAAAAAAA+AGG + chr6_4:54629924-54629943 Msa0991110:intron 20.0%
!! ATCTTTATGTGAAAAAAAAG+GGG + chr6_4:54629926-54629945 Msa0991110:intron 20.0%
!!! TTTATTTTAGCGCATATTAT+AGG + chr6_4:54629970-54629989 Msa0991110:intron 20.0%
!!! TTATTTTAGCGCATATTATA+GGG + chr6_4:54629971-54629990 Msa0991110:intron 20.0%
!! CACTAAAAATTAATGTATGT+GGG + chr6_4:54630038-54630057 Msa0991110:intron 20.0%
!! GTTGAAAATATAGTAAAGAT+TGG - chr6_4:54630187-54630206 None:intergenic 20.0%
!!! TCATTTTTTTATGTATTGCA+GGG + chr6_4:54630592-54630611 Msa0991110:intron 20.0%
! TGAAGAATGAATCAATGAAA+GGG - chr6_4:54621938-54621957 None:intergenic 25.0%
! TCACAATATGTATCCATATA+GGG - chr6_4:54622131-54622150 None:intergenic 25.0%
! TTCACAATATGTATCCATAT+AGG - chr6_4:54622132-54622151 None:intergenic 25.0%
! GATGTGATTCAATGTTTAAT+TGG + chr6_4:54622245-54622264 Msa0991110:intron 25.0%
! ATAGCCTAGAAAATATAATG+TGG + chr6_4:54622288-54622307 Msa0991110:intron 25.0%
!! ACAACCACATTATATTTTCT+AGG - chr6_4:54622295-54622314 None:intergenic 25.0%
! TACTAAAATACCCCTAATAA+GGG - chr6_4:54622373-54622392 None:intergenic 25.0%
! TTACTAAAATACCCCTAATA+AGG - chr6_4:54622374-54622393 None:intergenic 25.0%
!!! TTAGGGGTATTTTAGTAAAT+TGG + chr6_4:54622376-54622395 Msa0991110:intron 25.0%
!! TTTAGTAAATTGGTAATTGG+CGG + chr6_4:54622386-54622405 Msa0991110:intron 25.0%
! ATATAAAAATGGTGAGAAAG+GGG + chr6_4:54622420-54622439 Msa0991110:intron 25.0%
! AAAACTAAGATTTGATGAAG+AGG - chr6_4:54622603-54622622 None:intergenic 25.0%
!!! ATCAAATCTTAGTTTTTCTC+AGG + chr6_4:54622607-54622626 Msa0991110:five_prime_UTR 25.0%
! CTAATAGATTGATGAAAAGA+TGG - chr6_4:54622692-54622711 None:intergenic 25.0%
! AATAAGAAAAACACAGAAAG+AGG - chr6_4:54622765-54622784 None:intergenic 25.0%
!! CTTATTTCTTTGTGTGATTA+TGG + chr6_4:54622779-54622798 Msa0991110:intron 25.0%
! GACATGTTACAGAAATTATA+TGG + chr6_4:54623101-54623120 Msa0991110:intron 25.0%
! ATGGAAAGATTTGATATTCA+TGG + chr6_4:54623120-54623139 Msa0991110:intron 25.0%
! TTGATATTCATGGTATAGAA+AGG + chr6_4:54623130-54623149 Msa0991110:intron 25.0%
!! CATAAATTTTCTGCATCATT+GGG - chr6_4:54623194-54623213 None:intergenic 25.0%
! TTGAAAATTTAGATGGACAA+TGG + chr6_4:54623358-54623377 Msa0991110:intron 25.0%
! TAGGAACTGAAAACTAAATT+TGG + chr6_4:54623551-54623570 Msa0991110:intron 25.0%
! CATAAAACCCTAAATAAAAG+AGG - chr6_4:54623653-54623672 None:intergenic 25.0%
!!! CTCTTTTATTTAGGGTTTTA+TGG + chr6_4:54623651-54623670 Msa0991110:intron 25.0%
! AATTAGCTAAATATAATGCG+CGG + chr6_4:54623786-54623805 Msa0991110:intron 25.0%
! AGAGAAGAAAAATGAATGTA+TGG + chr6_4:54623948-54623967 Msa0991110:intron 25.0%
! TTAGTTTAGGTAGAAAGAAA+AGG + chr6_4:54624312-54624331 Msa0991110:intron 25.0%
! TAGTTTAGGTAGAAAGAAAA+GGG + chr6_4:54624313-54624332 Msa0991110:intron 25.0%
! ACATGATATGATGAAAAAGT+TGG - chr6_4:54624346-54624365 None:intergenic 25.0%
! ATGCATATGATATGAAAATG+TGG + chr6_4:54624466-54624485 Msa0991110:intron 25.0%
! ATATGATATGAAAATGTGGT+TGG + chr6_4:54624470-54624489 Msa0991110:intron 25.0%
!! TCTGTTTAAGGTATAAGAAA+AGG + chr6_4:54624508-54624527 Msa0991110:intron 25.0%
!!! TGTTCTAAAGTTACTTTTTG+CGG - chr6_4:54624977-54624996 None:intergenic 25.0%
! ATGAAATCAATGGTAAACTT+TGG + chr6_4:54625107-54625126 Msa0991110:intron 25.0%
! TGAAATCAATGGTAAACTTT+GGG + chr6_4:54625108-54625127 Msa0991110:intron 25.0%
!!! AATTTTTTTAGCAGTGAAAG+CGG - chr6_4:54625146-54625165 None:intergenic 25.0%
!! ACATTCTGATTTTTCACAAT+GGG - chr6_4:54625217-54625236 None:intergenic 25.0%
! TCTGATAAATGTAAAATGGT+TGG - chr6_4:54625259-54625278 None:intergenic 25.0%
! ACTTTAGTAGTTATAGACTA+CGG + chr6_4:54625620-54625639 Msa0991110:intron 25.0%
!!! TGAACCTTTTTTGTACATAA+TGG + chr6_4:54625683-54625702 Msa0991110:intron 25.0%
! TATGCCATTATGTACAAAAA+AGG - chr6_4:54625690-54625709 None:intergenic 25.0%
! GATAAATGTATGGTTTCATA+TGG - chr6_4:54625808-54625827 None:intergenic 25.0%
! TTTCTCTTATACTTCTTTCT+TGG + chr6_4:54625864-54625883 Msa0991110:intron 25.0%
! TTCATTGTCTAAAAAAGATC+AGG - chr6_4:54625890-54625909 None:intergenic 25.0%
!!! TGATCTTTTTTAGACAATGA+AGG + chr6_4:54625889-54625908 Msa0991110:intron 25.0%
! AAAGAAACCTACTTTAGATA+TGG - chr6_4:54626007-54626026 None:intergenic 25.0%
! AAACTTTGATTCTACATTTG+TGG + chr6_4:54626199-54626218 Msa0991110:intron 25.0%
! AGCATAATAAATTCAGAAGT+TGG - chr6_4:54626341-54626360 None:intergenic 25.0%
!!! ATAATCCTGGTTTTTAATCA+TGG + chr6_4:54626495-54626514 Msa0991110:intron 25.0%
!!! TTTGATTTTCATGCAGTAAA+AGG + chr6_4:54626548-54626567 Msa0991110:intron 25.0%
!! ATTTTAGATATTTTGTCCAC+CGG + chr6_4:54626660-54626679 Msa0991110:intron 25.0%
! CAATGTTCTTATGATTCAAA+AGG + chr6_4:54627103-54627122 Msa0991110:five_prime_UTR 25.0%
! AGCAGGAAAAAAATTATAGT+TGG - chr6_4:54627239-54627258 None:intergenic 25.0%
! CTTAATTAAAGCATGGTTTA+GGG + chr6_4:54627399-54627418 Msa0991110:five_prime_UTR 25.0%
!!! TTTTTTTCTTCTTTTGCCTT+TGG + chr6_4:54627997-54628016 Msa0991110:intron 25.0%
! TTTACATATGATTTCCTTCA+TGG - chr6_4:54628160-54628179 None:intergenic 25.0%
!!! GCTTAATTTTTTTTGTCTGT+AGG + chr6_4:54628528-54628547 Msa0991110:intron 25.0%
!! AGGAGTTTTTCTTTTATTGT+TGG + chr6_4:54628548-54628567 Msa0991110:intron 25.0%
! TTCATAAAGTAATCGTATCT+TGG + chr6_4:54628665-54628684 Msa0991110:intron 25.0%
! AAAAACAAAGCAATTTGCAT+CGG - chr6_4:54629011-54629030 None:intergenic 25.0%
!!! TTTCATTTTCATAGTGGATA+AGG + chr6_4:54629440-54629459 Msa0991110:intron 25.0%
! TTTCTACATAGAGAAACAAA+TGG - chr6_4:54629634-54629653 None:intergenic 25.0%
!! TTGTTTCTCTATGTAGAAAA+AGG + chr6_4:54629635-54629654 Msa0991110:intron 25.0%
! CTAACTTAAATCTAACAGAA+GGG - chr6_4:54629713-54629732 None:intergenic 25.0%
! TCTAACTTAAATCTAACAGA+AGG - chr6_4:54629714-54629733 None:intergenic 25.0%
! AAGTTAGACAATCACATAAA+TGG + chr6_4:54629726-54629745 Msa0991110:intron 25.0%
!!! TAAATGGCACATTTATTTTC+TGG + chr6_4:54629742-54629761 Msa0991110:intron 25.0%
!! TCTTGGTTGGTATTTATATA+AGG + chr6_4:54629832-54629851 Msa0991110:intron 25.0%
!! CTTGGTTGGTATTTATATAA+GGG + chr6_4:54629833-54629852 Msa0991110:intron 25.0%
!!! GGCATGTTTTAGAAAAATTA+AGG + chr6_4:54629887-54629906 Msa0991110:intron 25.0%
!!! CCACATACATTAATTTTTAG+TGG - chr6_4:54630040-54630059 None:intergenic 25.0%
! CCACTAAAAATTAATGTATG+TGG + chr6_4:54630037-54630056 Msa0991110:intron 25.0%
! GTAAAGATTGGGTAAAAAAA+AGG - chr6_4:54630175-54630194 None:intergenic 25.0%
! TGTTTCTTAATTATGGAGAA+AGG - chr6_4:54630289-54630308 None:intergenic 25.0%
! TTGTAAGGACAATAGAAAAA+AGG - chr6_4:54630325-54630344 None:intergenic 25.0%
!! TTTGCTTTAAACAACAGAAA+TGG - chr6_4:54630358-54630377 None:intergenic 25.0%
! TTCAATTACATAACCATGTT+TGG + chr6_4:54630422-54630441 Msa0991110:intron 25.0%
!! TTAATATTACCAGCTAGTTT+AGG - chr6_4:54630470-54630489 None:intergenic 25.0%
!!! CTCATTTTTTTATGTATTGC+AGG + chr6_4:54630591-54630610 Msa0991110:intron 25.0%
! TAAGATGGATAAACTATTTG+AGG + chr6_4:54630639-54630658 Msa0991110:three_prime_UTR 25.0%
! ATATATGTTCAAGCATGTTA+TGG + chr6_4:54630756-54630775 Msa0991110:intron 25.0%
! ATAATTTCAAATGTTTCAGG+TGG + chr6_4:54630818-54630837 Msa0991110:intron 25.0%
!! TAATTTCAAATGTTTCAGGT+GGG + chr6_4:54630819-54630838 Msa0991110:intron 25.0%
!!! AATGAAAGTTTGGTTTTCAT+TGG - chr6_4:54630994-54631013 None:intergenic 25.0%
!!! ATATGGATTTTGGTTGGATT+GGG - chr6_4:54621877-54621896 None:intergenic 30.0%
! TTTGAAGAGGATATGGATTT+TGG - chr6_4:54621887-54621906 None:intergenic 30.0%
CTGAAGAATGAATCAATGAA+AGG - chr6_4:54621939-54621958 None:intergenic 30.0%
!! TTCATTGATTCATTCTTCAG+AGG + chr6_4:54621939-54621958 Msa0991110:five_prime_UTR 30.0%
CACAATATGTATCCATATAG+GGG - chr6_4:54622130-54622149 None:intergenic 30.0%
!!! AAATGTTGTTTTACCTTGTG+AGG + chr6_4:54622209-54622228 Msa0991110:intron 30.0%
! TTTACCATTTTGCCCTTATT+AGG + chr6_4:54622358-54622377 Msa0991110:intron 30.0%
! TTACCATTTTGCCCTTATTA+GGG + chr6_4:54622359-54622378 Msa0991110:intron 30.0%
! TTAGTAAATTGGTAATTGGC+GGG + chr6_4:54622387-54622406 Msa0991110:intron 30.0%
ACGTAATACAACGAAATTGA+CGG + chr6_4:54622520-54622539 Msa0991110:intron 30.0%
GAAATTGACAGGAAAAGAAA+AGG + chr6_4:54622551-54622570 Msa0991110:intron 30.0%
ATCTATTAGCATGCATGTTT+AGG + chr6_4:54622703-54622722 Msa0991110:intron 30.0%
TCTATTAGCATGCATGTTTA+GGG + chr6_4:54622704-54622723 Msa0991110:intron 30.0%
!! GATTGTTTTATCCTTGATTC+TGG + chr6_4:54622822-54622841 Msa0991110:intron 30.0%
!!! TGATGTTTTGGTTTGTTGTT+TGG + chr6_4:54622892-54622911 Msa0991110:intron 30.0%
!! TGGTTTGTTGTTTGGTTAAT+TGG + chr6_4:54622900-54622919 Msa0991110:intron 30.0%
! CCATAAATTTTCTGCATCAT+TGG - chr6_4:54623195-54623214 None:intergenic 30.0%
CCAATGATGCAGAAAATTTA+TGG + chr6_4:54623192-54623211 Msa0991110:intron 30.0%
ATGATGCAGAAAATTTATGG+TGG + chr6_4:54623195-54623214 Msa0991110:intron 30.0%
ACTTTCACAGTGATTTAGTT+AGG + chr6_4:54623532-54623551 Msa0991110:intron 30.0%
AAGAATAGTGAGAGTAGAAT+TGG + chr6_4:54623685-54623704 Msa0991110:intron 30.0%
ATTAGCTAAATATAATGCGC+GGG + chr6_4:54623787-54623806 Msa0991110:intron 30.0%
! TATCTTTTTGTATGCAATGC+AGG + chr6_4:54623895-54623914 Msa0991110:intron 30.0%
! GAAGTAATTGCCTTTTATTG+AGG + chr6_4:54624270-54624289 Msa0991110:intron 30.0%
CAATTAGCATCCTCAATAAA+AGG - chr6_4:54624283-54624302 None:intergenic 30.0%
! ATTGATGCAAGGTTTAGTTT+AGG + chr6_4:54624299-54624318 Msa0991110:intron 30.0%
AGTTTAGGTAGAAAGAAAAG+GGG + chr6_4:54624314-54624333 Msa0991110:intron 30.0%
TATGAAAATGTGGTTGGAAA+AGG + chr6_4:54624476-54624495 Msa0991110:intron 30.0%
!! CTAATCTGAGAGTATTGTAT+TGG - chr6_4:54624628-54624647 None:intergenic 30.0%
GATTTCATACTTTGACTCTA+CGG - chr6_4:54625095-54625114 None:intergenic 30.0%
GAGTCAAAGTATGAAATCAA+TGG + chr6_4:54625097-54625116 Msa0991110:intron 30.0%
!!! ATTTTTTTAGCAGTGAAAGC+GGG - chr6_4:54625145-54625164 None:intergenic 30.0%
! GACATTCTGATTTTTCACAA+TGG - chr6_4:54625218-54625237 None:intergenic 30.0%
! AAATTGATTCTATGCAGGTT+TGG - chr6_4:54625404-54625423 None:intergenic 30.0%
! GACATAAATTGATTCTATGC+AGG - chr6_4:54625409-54625428 None:intergenic 30.0%
GTGACATCAAAATCTCTAAA+TGG + chr6_4:54625538-54625557 Msa0991110:intron 30.0%
ACTACTAAAGTTACATGAGA+AGG - chr6_4:54625611-54625630 None:intergenic 30.0%
CGATATTGTTGAATCCATTA+TGG + chr6_4:54625769-54625788 Msa0991110:five_prime_UTR 30.0%
TGTTGAATCCATTATGGAAA+AGG + chr6_4:54625775-54625794 Msa0991110:five_prime_UTR 30.0%
! GTTAAGAACCTTTTCCATAA+TGG - chr6_4:54625786-54625805 None:intergenic 30.0%
ATTGAAGGAGGATAAATGTA+TGG - chr6_4:54625818-54625837 None:intergenic 30.0%
GAAACTATAGAAATTGAAGG+AGG - chr6_4:54625830-54625849 None:intergenic 30.0%
GAGGAAACTATAGAAATTGA+AGG - chr6_4:54625833-54625852 None:intergenic 30.0%
AAGAGAAAAGAATGAAACTG+AGG - chr6_4:54625852-54625871 None:intergenic 30.0%
!!! TCTTTTTTAGACAATGAAGG+AGG + chr6_4:54625892-54625911 Msa0991110:intron 30.0%
TATATAATGTGCAGAAGTTG+AGG + chr6_4:54626050-54626069 Msa0991110:intron 30.0%
CTTTAGACAGTTCAGTATAA+GGG - chr6_4:54626093-54626112 None:intergenic 30.0%
! GCAGATTTAGTTCAAAGAAT+TGG + chr6_4:54626237-54626256 Msa0991110:five_prime_UTR 30.0%
TCACAAATCACATCAGAATA+TGG - chr6_4:54627033-54627052 None:intergenic 30.0%
! TATAGTTGGTTCACATAATC+TGG - chr6_4:54627225-54627244 None:intergenic 30.0%
CAATGTACATCAATGTCAAT+TGG - chr6_4:54627370-54627389 None:intergenic 30.0%
GCTTAATTAAAGCATGGTTT+AGG + chr6_4:54627398-54627417 Msa0991110:five_prime_UTR 30.0%
TTGAATCAGCTTTGCTTAAT+TGG + chr6_4:54627520-54627539 Msa0991110:CDS 30.0%
TGAATCAGCTTTGCTTAATT+GGG + chr6_4:54627521-54627540 Msa0991110:CDS 30.0%
! TGAAGAGGAGTATAACAAAT+TGG + chr6_4:54627572-54627591 Msa0991110:CDS 30.0%
ATTGTGTTGCATATAGTAAG+TGG - chr6_4:54627803-54627822 None:intergenic 30.0%
GAAAATGAATGGTACAAACA+TGG - chr6_4:54627923-54627942 None:intergenic 30.0%
CTTGTGTGACATTTACTAAT+TGG - chr6_4:54628247-54628266 None:intergenic 30.0%
AATGGAAATGTGATGTAAAG+TGG + chr6_4:54628296-54628315 Msa0991110:intron 30.0%
GTTTATGTGTTTACGAATTG+AGG + chr6_4:54628347-54628366 Msa0991110:intron 30.0%
AATGTTACACATATAAGGAG+AGG - chr6_4:54628450-54628469 None:intergenic 30.0%
CTCCTTATATGTGTAACATT+CGG + chr6_4:54628450-54628469 Msa0991110:intron 30.0%
TTCCGAATGTTACACATATA+AGG - chr6_4:54628455-54628474 None:intergenic 30.0%
! ATCCACTTTCACTGTATTTT+TGG + chr6_4:54629179-54629198 Msa0991110:intron 30.0%
! TCCACTTTCACTGTATTTTT+GGG + chr6_4:54629180-54629199 Msa0991110:intron 30.0%
GTTATAGTCAGTCAGTTATT+CGG + chr6_4:54629266-54629285 Msa0991110:intron 30.0%
! TAGAGAGTATGTGTGTAAAT+AGG + chr6_4:54629295-54629314 Msa0991110:intron 30.0%
AAAGATGTGGTAAACTTATC+AGG + chr6_4:54629360-54629379 Msa0991110:intron 30.0%
TTTCTCTATGTAGAAAAAGG+AGG + chr6_4:54629638-54629657 Msa0991110:intron 30.0%
!! CACATTTATTTTCTGGTCAA+TGG + chr6_4:54629749-54629768 Msa0991110:intron 30.0%
ACATATCATTGTACACATCT+TGG + chr6_4:54629815-54629834 Msa0991110:intron 30.0%
AAGAGAGAGAAGACAATTAA+TGG + chr6_4:54630080-54630099 Msa0991110:intron 30.0%
AAGGTATATAATATGGGGAA+TGG - chr6_4:54630156-54630175 None:intergenic 30.0%
ATATAGTGAAATTACCCTTG+TGG - chr6_4:54630237-54630256 None:intergenic 30.0%
! AGGACACTGTTTCTTAATTA+TGG - chr6_4:54630296-54630315 None:intergenic 30.0%
CAATAGAAAAAAGGACACAA+AGG - chr6_4:54630316-54630335 None:intergenic 30.0%
TTCTATTGTCCTTACAAACA+TGG + chr6_4:54630328-54630347 Msa0991110:intron 30.0%
TCTATTGTCCTTACAAACAT+GGG + chr6_4:54630329-54630348 Msa0991110:intron 30.0%
GAAAGAGTTGTAGATTAAGA+TGG + chr6_4:54630624-54630643 Msa0991110:exon 30.0%
TCATTGGAACTATTTGAGAA+CGG - chr6_4:54630978-54630997 None:intergenic 30.0%
TGGAGAACAATGTTCGAATT+TGG - chr6_4:54621836-54621855 None:intergenic 35.0%
!!! GGAAAGTGATTTTGGTTGAA+TGG - chr6_4:54621856-54621875 None:intergenic 35.0%
!! TTGGATTGGGAAAGTGATTT+TGG - chr6_4:54621864-54621883 None:intergenic 35.0%
!!! GATATGGATTTTGGTTGGAT+TGG - chr6_4:54621878-54621897 None:intergenic 35.0%
!! AAGAGGATATGGATTTTGGT+TGG - chr6_4:54621883-54621902 None:intergenic 35.0%
!!! CATCGATTTTGAAGAGGATA+TGG - chr6_4:54621894-54621913 None:intergenic 35.0%
CATATCCTCTTCAAAATCGA+TGG + chr6_4:54621892-54621911 Msa0991110:five_prime_UTR 35.0%
AGAATGAATCAATGAAAGGG+CGG - chr6_4:54621935-54621954 None:intergenic 35.0%
AATACGTCATTAACCTCACA+AGG - chr6_4:54622225-54622244 None:intergenic 35.0%
GGGCAAAATGGTAAAATCAA+CGG - chr6_4:54622353-54622372 None:intergenic 35.0%
! TACCATTTTGCCCTTATTAG+GGG + chr6_4:54622360-54622379 Msa0991110:intron 35.0%
! TAGTAAATTGGTAATTGGCG+GGG + chr6_4:54622388-54622407 Msa0991110:intron 35.0%
CGTAATACAACGAAATTGAC+GGG + chr6_4:54622521-54622540 Msa0991110:intron 35.0%
GTAATACAACGAAATTGACG+GGG + chr6_4:54622522-54622541 Msa0991110:intron 35.0%
ATTGACAGGAAAAGAAAAGG+AGG + chr6_4:54622554-54622573 Msa0991110:intron 35.0%
GAAAAGAAAAGGAGGAATCA+AGG + chr6_4:54622562-54622581 Msa0991110:five_prime_UTR 35.0%
!!! TTGTTGTTTTGTTCTCCTTC+TGG + chr6_4:54622728-54622747 Msa0991110:intron 35.0%
!!! TGTTGTTTTGTTCTCCTTCT+GGG + chr6_4:54622729-54622748 Msa0991110:intron 35.0%
GGTGTGTAATTGAATGTTAG+AGG + chr6_4:54622800-54622819 Msa0991110:intron 35.0%
AAAACATGCAACCAGAATCA+AGG - chr6_4:54622836-54622855 None:intergenic 35.0%
!! TGATTCTGGTTGCATGTTTT+TGG + chr6_4:54622836-54622855 Msa0991110:intron 35.0%
!! GGGGTTTGATTTTGATGTTT+TGG + chr6_4:54622880-54622899 Msa0991110:intron 35.0%
! TTAGATGGACAATGGATTTG+AGG + chr6_4:54623366-54623385 Msa0991110:intron 35.0%
CAGTCAACAGAGGAAAAAAA+GGG + chr6_4:54623420-54623439 Msa0991110:five_prime_UTR 35.0%
ATGCTTCTGATCCTTTGATT+TGG + chr6_4:54623612-54623631 Msa0991110:intron 35.0%
! TGCTTCTGATCCTTTGATTT+GGG + chr6_4:54623613-54623632 Msa0991110:intron 35.0%
AAATAAAAGAGGGCTCATCA+AGG - chr6_4:54623642-54623661 None:intergenic 35.0%
!! TGATGAGCCCTCTTTTATTT+AGG + chr6_4:54623642-54623661 Msa0991110:intron 35.0%
!! GATGAGCCCTCTTTTATTTA+GGG + chr6_4:54623643-54623662 Msa0991110:intron 35.0%
TTCTCTTCAGATGTCTTTGT+CGG - chr6_4:54623934-54623953 None:intergenic 35.0%
TTTCCATAACTTAGTTGTGC+AGG + chr6_4:54624088-54624107 Msa0991110:intron 35.0%
CCAGTTAGCTAAAATATGAG+AGG - chr6_4:54624174-54624193 None:intergenic 35.0%
!!! CCTCTCATATTTTAGCTAAC+TGG + chr6_4:54624171-54624190 Msa0991110:five_prime_UTR 35.0%
TGATTAATAAGTTGTGAGCG+TGG + chr6_4:54624367-54624386 Msa0991110:intron 35.0%
AGGAGCTATTGATCTGTTTA+AGG + chr6_4:54624496-54624515 Msa0991110:intron 35.0%
TTTGTCAGACAATGTCCTTA+GGG - chr6_4:54624558-54624577 None:intergenic 35.0%
GACATTGTCTGACAAAGATT+TGG + chr6_4:54624562-54624581 Msa0991110:intron 35.0%
!! CTGACAAAGATTTGGTGATA+TGG + chr6_4:54624570-54624589 Msa0991110:intron 35.0%
!! TCTGAGAGTATTGTATTGGT+AGG - chr6_4:54624624-54624643 None:intergenic 35.0%
TTCTTTACTACTTACAGCTC+AGG - chr6_4:54624681-54624700 None:intergenic 35.0%
!!! TTTTCTGCATTCAAGTTGAG+TGG + chr6_4:54624793-54624812 Msa0991110:intron 35.0%
! TCGCAATTGAAGTGTTTCTT+TGG - chr6_4:54624864-54624883 None:intergenic 35.0%
GAAAGTGAGAAGAGAGAAAT+AGG - chr6_4:54625035-54625054 None:intergenic 35.0%
!!! TTCTATGCAGGTTTGGTTTT+GGG - chr6_4:54625397-54625416 None:intergenic 35.0%
!! ATTCTATGCAGGTTTGGTTT+TGG - chr6_4:54625398-54625417 None:intergenic 35.0%
TAATGGCATACTGAAGTTGA+AGG + chr6_4:54625700-54625719 Msa0991110:intron 35.0%
GTCATGATCTTAAGAAGAGA+AGG - chr6_4:54625980-54625999 None:intergenic 35.0%
! GCTTTAGACAGTTCAGTATA+AGG - chr6_4:54626094-54626113 None:intergenic 35.0%
TCAAGCCATGATTAAAAACC+AGG - chr6_4:54626503-54626522 None:intergenic 35.0%
! GATTTTCATGCAGTAAAAGG+TGG + chr6_4:54626551-54626570 Msa0991110:intron 35.0%
!! GAGTGTTGTGTTAGTAGTTT+TGG + chr6_4:54626608-54626627 Msa0991110:intron 35.0%
! ATATTTTGTCCACCGGTATT+CGG + chr6_4:54626667-54626686 Msa0991110:intron 35.0%
GGTAATTAAGCGCTTTGATT+TGG + chr6_4:54626732-54626751 Msa0991110:intron 35.0%
ATCACCAACAATGCAATGAA+AGG - chr6_4:54626832-54626851 None:intergenic 35.0%
AGTTTGGCTAACTGTAATGT+AGG + chr6_4:54626880-54626899 Msa0991110:intron 35.0%
TGCATCAGTAACAGAATAGT+GGG - chr6_4:54627139-54627158 None:intergenic 35.0%
!! TTAACGAATTTTCAGGCTGA+AGG + chr6_4:54627274-54627293 Msa0991110:intron 35.0%
AAATCTAGAAAACGGTGAAG+AGG + chr6_4:54627309-54627328 Msa0991110:five_prime_UTR 35.0%
TGACATTGATGTACATTGCT+TGG + chr6_4:54627372-54627391 Msa0991110:five_prime_UTR 35.0%
! TTAAGCAAAGCTGATTCAAC+TGG - chr6_4:54627519-54627538 None:intergenic 35.0%
TAATTGGGCTGTTGATCTTA+TGG + chr6_4:54627536-54627555 Msa0991110:CDS 35.0%
GGATGCTAGAAATATTGCTA+TGG + chr6_4:54627593-54627612 Msa0991110:CDS 35.0%
! TTTTGCTCCAAATATGACTC+AGG + chr6_4:54627617-54627636 Msa0991110:CDS 35.0%
AAGCATACCTGAGTCATATT+TGG - chr6_4:54627627-54627646 None:intergenic 35.0%
CAGAACACACAGAAAATGAA+TGG - chr6_4:54627934-54627953 None:intergenic 35.0%
!! TTCTTCTTTTGCCTTTGGAA+AGG + chr6_4:54628002-54628021 Msa0991110:intron 35.0%
AAGGCATACTGATGTTCTAT+TGG + chr6_4:54628021-54628040 Msa0991110:intron 35.0%
GTCATTTGAATATGAGAACG+AGG + chr6_4:54628593-54628612 Msa0991110:intron 35.0%
GTGCTTATTATATAGGTGCA+TGG - chr6_4:54628739-54628758 None:intergenic 35.0%
TTATAAACAACCTGCAGAAG+AGG - chr6_4:54628861-54628880 None:intergenic 35.0%
AGTGTCCTTACTGTAATATG+TGG + chr6_4:54628896-54628915 Msa0991110:intron 35.0%
! ATTTATCTTGGTTGTTGGCT+GGG - chr6_4:54628960-54628979 None:intergenic 35.0%
TATTTATCTTGGTTGTTGGC+TGG - chr6_4:54628961-54628980 None:intergenic 35.0%
! ATTTGCATCGGTCAACAAAA+TGG - chr6_4:54628999-54629018 None:intergenic 35.0%
AATAGCAACAAATACAGTGC+AGG - chr6_4:54629084-54629103 None:intergenic 35.0%
GTTTCTATAATGCCCTTCAT+CGG + chr6_4:54629104-54629123 Msa0991110:intron 35.0%
TCCCAAAAATACAGTGAAAG+TGG - chr6_4:54629184-54629203 None:intergenic 35.0%
! TAAAAGTTCCGCATTGATCT+CGG + chr6_4:54629330-54629349 Msa0991110:intron 35.0%
TGTCTACTAATATCTCGAAG+AGG - chr6_4:54629504-54629523 None:intergenic 35.0%
TAGTAGACATGCAGAATGTA+TGG + chr6_4:54629515-54629534 Msa0991110:intron 35.0%
ACATTGCTAGCATTTGACAT+TGG + chr6_4:54629579-54629598 Msa0991110:intron 35.0%
CATTGCTAGCATTTGACATT+GGG + chr6_4:54629580-54629599 Msa0991110:intron 35.0%
AAACATCTTCCACCAATCAA+AGG + chr6_4:54629673-54629692 Msa0991110:intron 35.0%
ATCATTGTACACATCTTGGT+TGG + chr6_4:54629819-54629838 Msa0991110:intron 35.0%
TGTGAAAAAAAAGGGGAGAT+TGG + chr6_4:54629933-54629952 Msa0991110:intron 35.0%
TTAGCGCATATTATAGGGTT+TGG + chr6_4:54629976-54629995 Msa0991110:intron 35.0%
! TTTAGTGGACAAGATTTCAC+TGG - chr6_4:54630025-54630044 None:intergenic 35.0%
TGTCAATGACAAAACCACAA+GGG + chr6_4:54630220-54630239 Msa0991110:intron 35.0%
!! AAAGGTTCTGAACAATGAAG+TGG - chr6_4:54630271-54630290 None:intergenic 35.0%
AAAGCTTCTCATCTTCTTCA+GGG - chr6_4:54630403-54630422 None:intergenic 35.0%
AAAAGCTTCTCATCTTCTTC+AGG - chr6_4:54630404-54630423 None:intergenic 35.0%
!! TACATAACCATGTTTGGTGT+TGG + chr6_4:54630428-54630447 Msa0991110:intron 35.0%
GATCTTTCTCTCTTCAAATC+AGG - chr6_4:54630665-54630684 None:intergenic 35.0%
! ATCAATCTTCATGAAGCACT+TGG + chr6_4:54630690-54630709 Msa0991110:three_prime_UTR 35.0%
! TTCATGAAGCACTTGGAAAT+AGG + chr6_4:54630697-54630716 Msa0991110:three_prime_UTR 35.0%
CATTGGAACTATTTGAGAAC+GGG - chr6_4:54630977-54630996 None:intergenic 35.0%
AGCATCAGTGAACAACTTGA+AGG - chr6_4:54621975-54621994 None:intergenic 40.0%
ATCCAAATGTCACCCCTATA+TGG + chr6_4:54622115-54622134 Msa0991110:intron 40.0%
ATCCATATAGGGGTGACATT+TGG - chr6_4:54622120-54622139 None:intergenic 40.0%
TACCCCTAATAAGGGCAAAA+TGG - chr6_4:54622365-54622384 None:intergenic 40.0%
AAAATGGTGAGAAAGGGGAA+CGG + chr6_4:54622425-54622444 Msa0991110:intron 40.0%
GAAAAGGAGGAATCAAGGAA+CGG + chr6_4:54622567-54622586 Msa0991110:five_prime_UTR 40.0%
GATTTGATGAAGAGGATGAG+AGG - chr6_4:54622595-54622614 None:intergenic 40.0%
TGATGAAGAAAACAGTACCC+CGG - chr6_4:54622654-54622673 None:intergenic 40.0%
GAGGATCAAAAAAACCCAGA+AGG - chr6_4:54622746-54622765 None:intergenic 40.0%
! ATGGACAATGGATTTGAGGA+TGG + chr6_4:54623370-54623389 Msa0991110:five_prime_UTR 40.0%
ACAAGCAGCTTCTGATATGA+TGG + chr6_4:54623393-54623412 Msa0991110:five_prime_UTR 40.0%
GCAGTCAACAGAGGAAAAAA+AGG + chr6_4:54623419-54623438 Msa0991110:five_prime_UTR 40.0%
AATCACTGTGAAAGTGAGAG+TGG - chr6_4:54623527-54623546 None:intergenic 40.0%
ATCAAGGACTCCCAAATCAA+AGG - chr6_4:54623626-54623645 None:intergenic 40.0%
TGTCCTGCACAACTAAGTTA+TGG - chr6_4:54624094-54624113 None:intergenic 40.0%
! CTTAATTGGTGACCTTTGTG+AGG + chr6_4:54624238-54624257 Msa0991110:intron 40.0%
TGAGGATGCTAATTGATGCA+AGG + chr6_4:54624288-54624307 Msa0991110:intron 40.0%
CTTTGTCAGACAATGTCCTT+AGG - chr6_4:54624559-54624578 None:intergenic 40.0%
ATGTCAAAGAGTTTCCTCTG+CGG + chr6_4:54624825-54624844 Msa0991110:intron 40.0%
TGCTTCTTTCCTCTGCTATA+AGG + chr6_4:54625184-54625203 Msa0991110:intron 40.0%
!!! TCTATGCAGGTTTGGTTTTG+GGG - chr6_4:54625396-54625415 None:intergenic 40.0%
CATACTGAAGTTGAAGGAGA+TGG + chr6_4:54625706-54625725 Msa0991110:intron 40.0%
! ATGAAGGAGGTTGACTCAAA+AGG + chr6_4:54625905-54625924 Msa0991110:five_prime_UTR 40.0%
! AGGTTGACTCAAAAGGAGAT+GGG + chr6_4:54625912-54625931 Msa0991110:five_prime_UTR 40.0%
AGGAGATGGGAAGATTGATA+TGG + chr6_4:54625925-54625944 Msa0991110:five_prime_UTR 40.0%
GGAAGATTGATATGGAAGAG+TGG + chr6_4:54625933-54625952 Msa0991110:five_prime_UTR 40.0%
! GACTCTGCCATATCTAAAGT+AGG + chr6_4:54625997-54626016 Msa0991110:intron 40.0%
TCACTTGAACTTAGAGCAAG+TGG + chr6_4:54626270-54626289 Msa0991110:five_prime_UTR 40.0%
! AGCTTGCTTGAAAGAAAGAC+AGG + chr6_4:54626419-54626438 Msa0991110:five_prime_UTR 40.0%
! TATTTTGTCCACCGGTATTC+GGG + chr6_4:54626668-54626687 Msa0991110:intron 40.0%
CCAAAACAAAACCCGAATAC+CGG - chr6_4:54626682-54626701 None:intergenic 40.0%
TTGTGTGCTCTGATATGTGA+AGG + chr6_4:54626760-54626779 Msa0991110:intron 40.0%
TACGCCTTTCATTGCATTGT+TGG + chr6_4:54626825-54626844 Msa0991110:intron 40.0%
!! TGCATTGTTGGTGATAAGAG+TGG + chr6_4:54626837-54626856 Msa0991110:intron 40.0%
!! GCATTGTTGGTGATAAGAGT+GGG + chr6_4:54626838-54626857 Msa0991110:intron 40.0%
AACTGCAGTGTTAGTGTGTT+TGG + chr6_4:54627061-54627080 Msa0991110:intron 40.0%
GCATCAGTAACAGAATAGTG+GGG - chr6_4:54627138-54627157 None:intergenic 40.0%
CTGCATCAGTAACAGAATAG+TGG - chr6_4:54627140-54627159 None:intergenic 40.0%
CACTATTCTGTTACTGATGC+AGG + chr6_4:54627138-54627157 Msa0991110:five_prime_UTR 40.0%
TTGAGGGAGCAATTGAATAG+TGG + chr6_4:54627337-54627356 Msa0991110:five_prime_UTR 40.0%
ATTGATGTACATTGCTTGGC+TGG + chr6_4:54627376-54627395 Msa0991110:five_prime_UTR 40.0%
!! TGGCTGGCTTAATTAAAGCA+TGG + chr6_4:54627392-54627411 Msa0991110:five_prime_UTR 40.0%
TTCTCTGTGATTTCTTGCAG+GGG - chr6_4:54627686-54627705 None:intergenic 40.0%
GTTCTCTGTGATTTCTTGCA+GGG - chr6_4:54627687-54627706 None:intergenic 40.0%
ATGGTACAAACATGGATCTG+CGG - chr6_4:54627915-54627934 None:intergenic 40.0%
TTCTGTGTGTTCTGCATTAG+AGG + chr6_4:54627940-54627959 Msa0991110:intron 40.0%
ACATCAGTATGCCTTTCCAA+AGG - chr6_4:54628016-54628035 None:intergenic 40.0%
TGAGCAGCACATTAATTCAG+AGG + chr6_4:54628064-54628083 Msa0991110:intron 40.0%
CAGCACATTAATTCAGAGGT+TGG + chr6_4:54628068-54628087 Msa0991110:intron 40.0%
CCATTACAACTAACCTTTCC+TGG - chr6_4:54628281-54628300 None:intergenic 40.0%
! CCAGGAAAGGTTAGTTGTAA+TGG + chr6_4:54628278-54628297 Msa0991110:intron 40.0%
! AGTCTTTTAGTGTCTATCGC+TGG + chr6_4:54628320-54628339 Msa0991110:intron 40.0%
TTTAGTGTCTATCGCTGGTA+TGG + chr6_4:54628325-54628344 Msa0991110:intron 40.0%
GTTCACCAGTCAGGATAAAT+AGG - chr6_4:54628479-54628498 None:intergenic 40.0%
! ACTTTGAAAGTTCACCAGTC+AGG - chr6_4:54628488-54628507 None:intergenic 40.0%
!!! GTCAACCACTTTTGAGACAA+CGG - chr6_4:54628794-54628813 None:intergenic 40.0%
GAAGAGGTAGCTACAGAAAA+AGG - chr6_4:54628845-54628864 None:intergenic 40.0%
CTGAGCCACATATTACAGTA+AGG - chr6_4:54628904-54628923 None:intergenic 40.0%
! TTTATCTTGGTTGTTGGCTG+GGG - chr6_4:54628959-54628978 None:intergenic 40.0%
TGACGTAGTGTACCTTTGAT+TGG - chr6_4:54629688-54629707 None:intergenic 40.0%
!! GGAGATTGGTCTGTTATTGA+TGG + chr6_4:54629947-54629966 Msa0991110:intron 40.0%
AAGACTGGAGAAATTTCCAC+AGG + chr6_4:54630123-54630142 Msa0991110:intron 40.0%
GTGTCAATGACAAAACCACA+AGG + chr6_4:54630219-54630238 Msa0991110:intron 40.0%
AAGCTTCTCATCTTCTTCAG+GGG - chr6_4:54630402-54630421 None:intergenic 40.0%
CCAATATCCAACACCAAACA+TGG - chr6_4:54630438-54630457 None:intergenic 40.0%
!! CCATGTTTGGTGTTGGATAT+TGG + chr6_4:54630435-54630454 Msa0991110:intron 40.0%
AGTTCAGTTCCTAAACTAGC+TGG + chr6_4:54630458-54630477 Msa0991110:intron 40.0%
ATGTATTGCAGGGTTGCAAA+TGG + chr6_4:54630602-54630621 Msa0991110:intron 40.0%
AAATTGCAGCACAACTACGA+GGG + chr6_4:54630845-54630864 Msa0991110:three_prime_UTR 40.0%
!!! GGTAGCCATCGATTTTGAAG+AGG - chr6_4:54621900-54621919 None:intergenic 45.0%
AATCAATGAAAGGGCGGTGA+AGG - chr6_4:54621929-54621948 None:intergenic 45.0%
GTTGTTCACTGATGCTTCGT+TGG + chr6_4:54621979-54621998 Msa0991110:five_prime_UTR 45.0%
ATTTCTCCAACCTGGCTAAC+CGG + chr6_4:54622632-54622651 Msa0991110:intron 45.0%
TGTGAAAGTGAGAGTGGTGA+TGG - chr6_4:54623521-54623540 None:intergenic 45.0%
CAACTAAGCTACTCACTGTC+AGG - chr6_4:54624023-54624042 None:intergenic 45.0%
AGTGAGTAGCTTAGTTGTGC+AGG + chr6_4:54624026-54624045 Msa0991110:intron 45.0%
GTGACCTTTGTGAGGAATGA+GGG + chr6_4:54624246-54624265 Msa0991110:intron 45.0%
TTCTCCCTCATTCCTCACAA+AGG - chr6_4:54624253-54624272 None:intergenic 45.0%
CACAACCAAACACACCCTAA+TGG + chr6_4:54625059-54625078 Msa0991110:intron 45.0%
ACGGAACAATGCGTCCATTA+GGG - chr6_4:54625076-54625095 None:intergenic 45.0%
TACGGAACAATGCGTCCATT+AGG - chr6_4:54625077-54625096 None:intergenic 45.0%
!!! TTTGGTTTTGGGGACAGCAT+TGG - chr6_4:54625386-54625405 None:intergenic 45.0%
GAAGTTGAAGGAGATGGTCT+TGG + chr6_4:54625712-54625731 Msa0991110:intron 45.0%
! GAGGTTGACTCAAAAGGAGA+TGG + chr6_4:54625911-54625930 Msa0991110:five_prime_UTR 45.0%
CTATACTTGTGCTCCTTGTG+TGG + chr6_4:54626299-54626318 Msa0991110:five_prime_UTR 45.0%
TGATGCCTTACAACCACACA+AGG - chr6_4:54626315-54626334 None:intergenic 45.0%
AAACAAAACCCGAATACCGG+TGG - chr6_4:54626679-54626698 None:intergenic 45.0%
!!! CCGGTATTCGGGTTTTGTTT+TGG + chr6_4:54626679-54626698 Msa0991110:intron 45.0%
TGTGCTCTGATATGTGAAGG+CGG + chr6_4:54626763-54626782 Msa0991110:intron 45.0%
TGATAAGAGTGGGCGTTCAA+GGG + chr6_4:54626848-54626867 Msa0991110:intron 45.0%
TCAAGGGGATGTGGAAAGTT+TGG + chr6_4:54626864-54626883 Msa0991110:intron 45.0%
TTCTGTTACTGATGCAGGAG+AGG + chr6_4:54627143-54627162 Msa0991110:five_prime_UTR 45.0%
CAGGAGAGGTTATACTCACA+GGG + chr6_4:54627157-54627176 Msa0991110:five_prime_UTR 45.0%
AGGAGAGGTTATACTCACAG+GGG + chr6_4:54627158-54627177 Msa0991110:five_prime_UTR 45.0%
TGGTTTAGGGAACTTCCTTC+AGG + chr6_4:54627412-54627431 Msa0991110:five_prime_UTR 45.0%
!! CTTCCTTCAGGAGTGTTAGA+TGG + chr6_4:54627424-54627443 Msa0991110:five_prime_UTR 45.0%
AGTCCATCTAACACTCCTGA+AGG - chr6_4:54627430-54627449 None:intergenic 45.0%
! GTTAGATGGACTTTCACCTG+AGG + chr6_4:54627438-54627457 Msa0991110:five_prime_UTR 45.0%
GTGCATTCAAGAACTTCCTC+AGG - chr6_4:54627457-54627476 None:intergenic 45.0%
GGCTGATGTTGTAGTTGAAG+AGG + chr6_4:54627557-54627576 Msa0991110:CDS 45.0%
GGTTCTCTGTGATTTCTTGC+AGG - chr6_4:54627688-54627707 None:intergenic 45.0%
TGGTACAAACATGGATCTGC+GGG - chr6_4:54627914-54627933 None:intergenic 45.0%
CAACTAACCTTTCCTGGTTC+AGG - chr6_4:54628275-54628294 None:intergenic 45.0%
GGAAGCCTATTTATCCTGAC+TGG + chr6_4:54628471-54628490 Msa0991110:intron 45.0%
GCTTTCCGTTGTCTCAAAAG+TGG + chr6_4:54628786-54628805 Msa0991110:intron 45.0%
TTTCTTCGCCGAGATCAATG+CGG - chr6_4:54629341-54629360 None:intergenic 45.0%
TCTCGGCGAAGAAAAAGATG+TGG + chr6_4:54629347-54629366 Msa0991110:intron 45.0%
TGCAGAATGTATGGAGCGAT+CGG + chr6_4:54629524-54629543 Msa0991110:intron 45.0%
CGTAGTGTACCTTTGATTGG+TGG - chr6_4:54629685-54629704 None:intergenic 45.0%
AATGGTGCAGATTGTGTCAC+TGG + chr6_4:54630098-54630117 Msa0991110:intron 45.0%
! ATTGTGTCACTGGAGAAGAC+TGG + chr6_4:54630108-54630127 Msa0991110:intron 45.0%
ACTGGAGAAATTTCCACAGG+AGG + chr6_4:54630126-54630145 Msa0991110:intron 45.0%
CTGAACAATGAAGTGGTCAC+TGG - chr6_4:54630264-54630283 None:intergenic 45.0%
AATGGCGACCCATGTTTGTA+AGG - chr6_4:54630340-54630359 None:intergenic 45.0%
CAAATTGCAGCACAACTACG+AGG + chr6_4:54630844-54630863 Msa0991110:three_prime_UTR 45.0%
AAAGGGCGGTGAAGGTTCTT+TGG - chr6_4:54621921-54621940 None:intergenic 50.0%
AGAAAGGGGAACGGTGGAAA+CGG + chr6_4:54622434-54622453 Msa0991110:intron 50.0%
ACGGTGGAAACGGTGGAAAA+TGG + chr6_4:54622444-54622463 Msa0991110:intron 50.0%
CGGTGGAAACGGTGGAAAAT+GGG + chr6_4:54622445-54622464 Msa0991110:intron 50.0%
GGTGGAAACGGTGGAAAATG+GGG + chr6_4:54622446-54622465 Msa0991110:intron 50.0%
GTGGAAACGGTGGAAAATGG+GGG + chr6_4:54622447-54622466 Msa0991110:intron 50.0%
AACGGTGGAAAATGGGGGAA+CGG + chr6_4:54622452-54622471 Msa0991110:intron 50.0%
AAATGGGGGAACGGTGGAAA+CGG + chr6_4:54622461-54622480 Msa0991110:intron 50.0%
AACGGTGGAAACGGTGAGAA+AGG + chr6_4:54622470-54622489 Msa0991110:intron 50.0%
ACGGTGGAAACGGTGAGAAA+GGG + chr6_4:54622471-54622490 Msa0991110:intron 50.0%
CGGTGAGAAAGGGAAAGTGA+CGG + chr6_4:54622481-54622500 Msa0991110:intron 50.0%
GGTGAGAAAGGGAAAGTGAC+GGG + chr6_4:54622482-54622501 Msa0991110:intron 50.0%
GTGAGAAAGGGAAAGTGACG+GGG + chr6_4:54622483-54622502 Msa0991110:intron 50.0%
TGAGAAAGGGAAAGTGACGG+GGG + chr6_4:54622484-54622503 Msa0991110:intron 50.0%
CGGGGAGAAACGAAATTGAC+AGG + chr6_4:54622540-54622559 Msa0991110:intron 50.0%
CTCAGGTGATTTCTCCAACC+TGG + chr6_4:54622624-54622643 Msa0991110:intron 50.0%
TTTCTCCAACCTGGCTAACC+GGG + chr6_4:54622633-54622652 Msa0991110:intron 50.0%
TGATGGCAAGCAGTCAACAG+AGG + chr6_4:54623410-54623429 Msa0991110:five_prime_UTR 50.0%
!! GAAAGTGAGAGTGGTGATGG+AGG - chr6_4:54623518-54623537 None:intergenic 50.0%
GGTGACCTTTGTGAGGAATG+AGG + chr6_4:54624245-54624264 Msa0991110:intron 50.0%
TCCTCTGCGGATCAGTTCTT+AGG + chr6_4:54624838-54624857 Msa0991110:intron 50.0%
TGCGTCCATTAGGGTGTGTT+TGG - chr6_4:54625067-54625086 None:intergenic 50.0%
GGCTTGAGACCTTATAGCAG+AGG - chr6_4:54625196-54625215 None:intergenic 50.0%
GTGCTCCTTGTGTGGTTGTA+AGG + chr6_4:54626307-54626326 Msa0991110:five_prime_UTR 50.0%
GTGATAAGAGTGGGCGTTCA+AGG + chr6_4:54626847-54626866 Msa0991110:intron 50.0%
GATAAGAGTGGGCGTTCAAG+GGG + chr6_4:54626849-54626868 Msa0991110:intron 50.0%
GCAGGAGAGGTTATACTCAC+AGG + chr6_4:54627156-54627175 Msa0991110:five_prime_UTR 50.0%
AGAGGTTATACTCACAGGGG+AGG + chr6_4:54627161-54627180 Msa0991110:five_prime_UTR 50.0%
TACTCACAGGGGAGGACTAA+AGG + chr6_4:54627169-54627188 Msa0991110:five_prime_UTR 50.0%
!! ACGGTGAAGAGGAGCATTTG+AGG + chr6_4:54627320-54627339 Msa0991110:five_prime_UTR 50.0%
!! CGGTGAAGAGGAGCATTTGA+GGG + chr6_4:54627321-54627340 Msa0991110:five_prime_UTR 50.0%
ATGGCTGTTGCATGTGGGTT+TGG - chr6_4:54628141-54628160 None:intergenic 50.0%
CCTTCATGGCTGTTGCATGT+GGG - chr6_4:54628146-54628165 None:intergenic 50.0%
TCCTTCATGGCTGTTGCATG+TGG - chr6_4:54628147-54628166 None:intergenic 50.0%
ACACAAGCATGTCCTGAACC+AGG + chr6_4:54628260-54628279 Msa0991110:intron 50.0%
AGCATGTCCTGAACCAGGAA+AGG + chr6_4:54628265-54628284 Msa0991110:intron 50.0%
TCTGTAGCTACCTCTTCTGC+AGG + chr6_4:54628848-54628867 Msa0991110:intron 50.0%
!! TGTCTGCTAGCACCGATGAA+GGG - chr6_4:54629119-54629138 None:intergenic 50.0%
!! TTGTCTGCTAGCACCGATGA+AGG - chr6_4:54629120-54629139 None:intergenic 50.0%
!! CATAGTGGATAAGGCTCTGC+TGG + chr6_4:54629449-54629468 Msa0991110:intron 50.0%
AGAATGTATGGAGCGATCGG+CGG + chr6_4:54629527-54629546 Msa0991110:intron 50.0%
TCACTGGACTCTCATGTGAC+TGG - chr6_4:54630009-54630028 None:intergenic 50.0%
! GCTCTCGCGTTTTCTCGAAC+TGG + chr6_4:54622001-54622020 Msa0991110:five_prime_UTR 55.0%
ATGGTGAGAAAGGGGAACGG+TGG + chr6_4:54622428-54622447 Msa0991110:intron 55.0%
! GAGAAAGGGAAAGTGACGGG+GGG + chr6_4:54622485-54622504 Msa0991110:intron 55.0%
TTCTCCAACCTGGCTAACCG+GGG + chr6_4:54622634-54622653 Msa0991110:intron 55.0%
! AAACAGTACCCCGGTTAGCC+AGG - chr6_4:54622645-54622664 None:intergenic 55.0%
TGCAGGACACAGTGAGTAGC+TGG + chr6_4:54624043-54624062 Msa0991110:intron 55.0%
! TGAGCGTGGAGCTTTGACAG+TGG + chr6_4:54624381-54624400 Msa0991110:intron 55.0%
GCCTAAGAACTGATCCGCAG+AGG - chr6_4:54624842-54624861 None:intergenic 55.0%
CCCACATGCAACAGCCATGA+AGG + chr6_4:54628143-54628162 Msa0991110:intron 55.0%
GGACTCTCATGTGACTGGAG+AGG - chr6_4:54630004-54630023 None:intergenic 55.0%
! GGGGAATGGATTTCCTCCTG+TGG - chr6_4:54630142-54630161 None:intergenic 55.0%
AAGGGGAACGGTGGAAACGG+TGG + chr6_4:54622437-54622456 Msa0991110:intron 60.0%
GGTGGAAAATGGGGGAACGG+TGG + chr6_4:54622455-54622474 Msa0991110:intron 60.0%
! AAAGGGAAAGTGACGGGGGG+AGG + chr6_4:54622488-54622507 Msa0991110:intron 60.0%
! AAGGGAAAGTGACGGGGGGA+GGG + chr6_4:54622489-54622508 Msa0991110:intron 60.0%
! AGTACCCCGGTTAGCCAGGT+TGG - chr6_4:54622641-54622660 None:intergenic 60.0%
AGTGGGCGTTCAAGGGGATG+TGG + chr6_4:54626855-54626874 Msa0991110:intron 60.0%
! AGGGAAAGTGACGGGGGGAG+GGG + chr6_4:54622490-54622509 Msa0991110:intron 65.0%
! GGGAAAGTGACGGGGGGAGG+GGG + chr6_4:54622491-54622510 Msa0991110:intron 70.0%
! GGAAAGTGACGGGGGGAGGG+GGG + chr6_4:54622492-54622511 Msa0991110:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 54621785 54631054 54621785 ID=Msa0991110;Name=Msa0991110
chr6_4 mRNA 54621785 54631054 54621785 ID=Msa0991110-mRNA-1;Parent=Msa0991110;Name=Msa0991110-mRNA-1;_AED=0.12;_eAED=0.12;_QI=1274|0.90|1|1|0.54|0.5|12|300|63
chr6_4 exon 54621785 54622022 54621785 ID=Msa0991110-mRNA-1:exon:11192;Parent=Msa0991110-mRNA-1
chr6_4 exon 54622562 54622628 54622562 ID=Msa0991110-mRNA-1:exon:11193;Parent=Msa0991110-mRNA-1
chr6_4 exon 54623370 54623441 54623370 ID=Msa0991110-mRNA-1:exon:11194;Parent=Msa0991110-mRNA-1
chr6_4 exon 54623917 54623964 54623917 ID=Msa0991110-mRNA-1:exon:11195;Parent=Msa0991110-mRNA-1
chr6_4 exon 54624102 54624192 54624102 ID=Msa0991110-mRNA-1:exon:11196;Parent=Msa0991110-mRNA-1
chr6_4 exon 54625716 54625796 54625716 ID=Msa0991110-mRNA-1:exon:11197;Parent=Msa0991110-mRNA-1
chr6_4 exon 54625902 54626014 54625902 ID=Msa0991110-mRNA-1:exon:11198;Parent=Msa0991110-mRNA-1
chr6_4 exon 54626233 54626492 54626233 ID=Msa0991110-mRNA-1:exon:11199;Parent=Msa0991110-mRNA-1
chr6_4 exon 54627069 54627190 54627069 ID=Msa0991110-mRNA-1:exon:11200;Parent=Msa0991110-mRNA-1
chr6_4 exon 54627289 54627638 54627289 ID=Msa0991110-mRNA-1:exon:11201;Parent=Msa0991110-mRNA-1
chr6_4 exon 54630613 54630718 54630613 ID=Msa0991110-mRNA-1:exon:11202;Parent=Msa0991110-mRNA-1
chr6_4 exon 54630837 54631054 54630837 ID=Msa0991110-mRNA-1:exon:11203;Parent=Msa0991110-mRNA-1
chr6_4 five_prime_UTR 54621785 54622022 54621785 ID=Msa0991110-mRNA-1:five_prime_utr;Parent=Msa0991110-mRNA-1
chr6_4 five_prime_UTR 54622562 54622628 54622562 ID=Msa0991110-mRNA-1:five_prime_utr;Parent=Msa0991110-mRNA-1
chr6_4 five_prime_UTR 54623370 54623441 54623370 ID=Msa0991110-mRNA-1:five_prime_utr;Parent=Msa0991110-mRNA-1
chr6_4 five_prime_UTR 54623917 54623964 54623917 ID=Msa0991110-mRNA-1:five_prime_utr;Parent=Msa0991110-mRNA-1
chr6_4 five_prime_UTR 54624102 54624192 54624102 ID=Msa0991110-mRNA-1:five_prime_utr;Parent=Msa0991110-mRNA-1
chr6_4 five_prime_UTR 54625716 54625796 54625716 ID=Msa0991110-mRNA-1:five_prime_utr;Parent=Msa0991110-mRNA-1
chr6_4 five_prime_UTR 54625902 54626014 54625902 ID=Msa0991110-mRNA-1:five_prime_utr;Parent=Msa0991110-mRNA-1
chr6_4 five_prime_UTR 54626233 54626492 54626233 ID=Msa0991110-mRNA-1:five_prime_utr;Parent=Msa0991110-mRNA-1
chr6_4 five_prime_UTR 54627069 54627190 54627069 ID=Msa0991110-mRNA-1:five_prime_utr;Parent=Msa0991110-mRNA-1
chr6_4 five_prime_UTR 54627289 54627470 54627289 ID=Msa0991110-mRNA-1:five_prime_utr;Parent=Msa0991110-mRNA-1
chr6_4 CDS 54627471 54627638 54627471 ID=Msa0991110-mRNA-1:cds;Parent=Msa0991110-mRNA-1
chr6_4 CDS 54630613 54630636 54630613 ID=Msa0991110-mRNA-1:cds;Parent=Msa0991110-mRNA-1
chr6_4 three_prime_UTR 54630637 54630718 54630637 ID=Msa0991110-mRNA-1:three_prime_utr;Parent=Msa0991110-mRNA-1
chr6_4 three_prime_UTR 54630837 54631054 54630837 ID=Msa0991110-mRNA-1:three_prime_utr;Parent=Msa0991110-mRNA-1
Gene Sequence

>Msa0991110

ATGCACACTGAAGAAGAATTTGTTGAGCTTGTGAAGCAGCTGAAACCAGTTGAATCAGCTTTGCTTAATTGGGCTGTTGATCTTATGGCTGATGTTGTAGTTGAAGAGGAGTATAACAAATTGGATGCTAGAAATATTGCTATGGTTTTTGCTCCAAATATGACTCAGGGTTGCAAATGGAAAGAGTTGTAG
Protein sequence

>Msa0991110

MHTEEEFVELVKQLKPVESALLNWAVDLMADVVVEEEYNKLDARNIAMVFAPNMTQGCKWKEL*