Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901500 | XP_039683306.1 | 90.476 | 63 | 6 | 0 | 16 | 78 | 246 | 308 | 1.93e-30 | 121 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901500 | sp|Q8S9J0|TAUE4_ARATH | 46.377 | 69 | 37 | 0 | 9 | 77 | 233 | 301 | 7.17e-17 | 76.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901500 | A0A396JMY1 | 90.476 | 63 | 6 | 0 | 16 | 78 | 246 | 308 | 9.21e-31 | 121 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0039330 | Msa0901500 | 0.826869 | 2.140381e-54 | -8.615850e-47 |
| Msa0065890 | Msa0901500 | 0.804766 | 1.844859e-49 | -8.615850e-47 |
| Msa0068740 | Msa0901500 | -0.822836 | 1.913946e-53 | -8.615850e-47 |
| Msa0652940 | Msa0901500 | 0.802630 | 5.121185e-49 | -8.615850e-47 |
| Msa0673460 | Msa0901500 | 0.810043 | 1.402748e-50 | -8.615850e-47 |
| Msa0736190 | Msa0901500 | 0.832707 | 8.108816e-56 | -8.615850e-47 |
| Msa0766630 | Msa0901500 | 0.812048 | 5.157166e-51 | -8.615850e-47 |
| Msa0815990 | Msa0901500 | 0.807889 | 4.055036e-50 | -8.615850e-47 |
| Msa0130970 | Msa0901500 | 0.801148 | 1.032314e-48 | -8.615850e-47 |
| Msa0172420 | Msa0901500 | 0.816182 | 6.308633e-52 | -8.615850e-47 |
| Msa0506490 | Msa0901500 | 0.800410 | 1.460413e-48 | -8.615850e-47 |
| Msa0545210 | Msa0901500 | 0.801355 | 9.364869e-49 | -8.615850e-47 |
| Msa0558690 | Msa0901500 | 0.804380 | 2.220945e-49 | -8.615850e-47 |
| Msa0564390 | Msa0901500 | 0.802165 | 6.384889e-49 | -8.615850e-47 |
| Msa0860110 | Msa0901500 | 0.822945 | 1.804911e-53 | -8.615850e-47 |
| Msa0892340 | Msa0901500 | 0.803002 | 4.290506e-49 | -8.615850e-47 |
| Msa0901500 | Msa0987120 | 0.804480 | 2.116925e-49 | -8.615850e-47 |
| Msa0901500 | Msa0991110 | 0.812011 | 5.253467e-51 | -8.615850e-47 |
| Msa0901500 | Msa1006660 | 0.816163 | 6.370085e-52 | -8.615850e-47 |
| Msa0901500 | Msa1114710 | 0.805513 | 1.287705e-49 | -8.615850e-47 |
| Msa0901500 | Msa1163820 | 0.801651 | 8.140945e-49 | -8.615850e-47 |
| Msa0901500 | Msa1179770 | 0.848153 | 7.347686e-60 | -8.615850e-47 |
| Msa0901500 | Msa1228590 | 0.814525 | 1.473503e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901500 | MtrunA17_Chr1g0179621 | 90.476 | 63 | 6 | 0 | 16 | 78 | 246 | 308 | 1.77e-34 | 121 |
| Msa0901500 | MtrunA17_Chr7g0265481 | 57.333 | 75 | 32 | 0 | 4 | 78 | 231 | 305 | 2.70e-24 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901500 | AT2G36630.1 | 46.377 | 69 | 37 | 0 | 9 | 77 | 233 | 301 | 7.29e-18 | 76.3 |
Find 58 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGGAGGTGGATTTATTT+TGG | 0.132041 | 6_1:-98232837 | Msa0901500:three_prime_UTR |
| GATATCTCTTAGCTGCTTCT+TGG | 0.192978 | 6_1:-98231721 | Msa0901500:three_prime_UTR |
| CCACGAGTTCATTGGATTCT+TGG | 0.226975 | 6_1:-98231952 | Msa0901500:three_prime_UTR |
| ATGCCTCACATATGTATTAT+AGG | 0.240431 | 6_1:+98232939 | None:intergenic |
| CTGGCCAATTAAATTGAAAA+TGG | 0.264422 | 6_1:+98232307 | None:intergenic |
| GTTGGAGGCTTACTTGGTTC+TGG | 0.275020 | 6_1:-98232854 | Msa0901500:three_prime_UTR |
| AGAAAATTAGTTGCATTTCT+TGG | 0.286067 | 6_1:-98232195 | Msa0901500:three_prime_UTR |
| TTGGGTGCTCTTCGGCTTGC+AGG | 0.288226 | 6_1:-98233225 | Msa0901500:intron |
| CCTTGATGATTTGAATTAAG+AGG | 0.306448 | 6_1:+98233365 | None:intergenic |
| GGGCCTCTTCTCCTTGAGAT+AGG | 0.312567 | 6_1:-98232815 | Msa0901500:three_prime_UTR |
| CACGAGTTCATTGGATTCTT+GGG | 0.339243 | 6_1:-98231951 | Msa0901500:three_prime_UTR |
| GGCTTACTTGGTTCTGGAGG+TGG | 0.346407 | 6_1:-98232848 | Msa0901500:three_prime_UTR |
| GACAAATATTAGTAAGTTAG+TGG | 0.376098 | 6_1:-98231796 | Msa0901500:three_prime_UTR |
| GAAAATTAGTTGCATTTCTT+GGG | 0.377774 | 6_1:-98232194 | Msa0901500:three_prime_UTR |
| GGAATAGTTGGAGGCTTACT+TGG | 0.381136 | 6_1:-98232860 | Msa0901500:three_prime_UTR |
| AATTAGCCTTGTTACTAACT+TGG | 0.381369 | 6_1:+98231686 | None:intergenic |
| TAATTAATTTAGAGTAAAGT+AGG | 0.398409 | 6_1:-98231915 | Msa0901500:three_prime_UTR |
| ATATACAGCCACGAGTTCAT+TGG | 0.409485 | 6_1:-98231960 | Msa0901500:three_prime_UTR |
| GAATGCAGGCTGTGACATTA+AGG | 0.410956 | 6_1:-98233927 | None:intergenic |
| GTCATTGTATTCATCCTCTC+TGG | 0.433319 | 6_1:-98232162 | Msa0901500:three_prime_UTR |
| GTATGGTATTGGGTGCTCTT+CGG | 0.446576 | 6_1:-98233233 | Msa0901500:CDS |
| CCTCTTAATTCAAATCATCA+AGG | 0.458016 | 6_1:-98233365 | Msa0901500:intron |
| AGGACTGCAGTGTATGGTAT+TGG | 0.459813 | 6_1:-98233244 | Msa0901500:CDS |
| TCATATTGATAATATTGTAC+TGG | 0.480925 | 6_1:+98232288 | None:intergenic |
| CACAGAATGAGGATGGGCAC+AGG | 0.484366 | 6_1:-98232965 | Msa0901500:CDS |
| GGTACTGTAGGTGGAATAGT+TGG | 0.506028 | 6_1:-98232872 | Msa0901500:three_prime_UTR |
| AATCAAGGGTTCATAGATGT+TGG | 0.512920 | 6_1:-98231874 | Msa0901500:three_prime_UTR |
| GGACTGCAGTGTATGGTATT+GGG | 0.513027 | 6_1:-98233243 | Msa0901500:CDS |
| AGCAAACAAGAGGAAAATCA+AGG | 0.516661 | 6_1:-98231889 | Msa0901500:three_prime_UTR |
| CATGGAATATCTATATCTCT+AGG | 0.532208 | 6_1:-98231833 | Msa0901500:three_prime_UTR |
| TATGTGAGGCATCAATAGAA+TGG | 0.532905 | 6_1:-98232928 | Msa0901500:three_prime_UTR |
| TGAGATAGGTGTCATCCCTC+AGG | 0.534173 | 6_1:-98232801 | Msa0901500:intron |
| CAAGGATCACAGAATGAGGA+TGG | 0.535248 | 6_1:-98232972 | Msa0901500:CDS |
| GGAGGCTTACTTGGTTCTGG+AGG | 0.543501 | 6_1:-98232851 | Msa0901500:three_prime_UTR |
| ATTACCCATGGTGAGAGCAC+TGG | 0.549613 | 6_1:+98232128 | None:intergenic |
| AATTAGTTGCATTTCTTGGG+AGG | 0.558277 | 6_1:-98232191 | Msa0901500:three_prime_UTR |
| ATTAGTTGCATTTCTTGGGA+GGG | 0.561323 | 6_1:-98232190 | Msa0901500:three_prime_UTR |
| TTTGCCAGTGCTCTCACCAT+GGG | 0.569105 | 6_1:-98232132 | Msa0901500:intron |
| TTCACAAGGATCACAGAATG+AGG | 0.575447 | 6_1:-98232976 | Msa0901500:CDS |
| ACTGTAGGTGGAATAGTTGG+AGG | 0.576506 | 6_1:-98232869 | Msa0901500:three_prime_UTR |
| ATGTAGAGGACTGCAGTGTA+TGG | 0.579413 | 6_1:-98233250 | Msa0901500:CDS |
| GAGATATAGATATTCCATGT+TGG | 0.591536 | 6_1:+98231837 | None:intergenic |
| AAGTAGGAATAGCAAACAAG+AGG | 0.594795 | 6_1:-98231899 | Msa0901500:three_prime_UTR |
| TGTTCAATGAGTGGTACTGT+AGG | 0.595666 | 6_1:-98232884 | Msa0901500:three_prime_UTR |
| ATTTGCCAGTGCTCTCACCA+TGG | 0.599498 | 6_1:-98232133 | Msa0901500:three_prime_UTR |
| ACACCTATCTCAAGGAGAAG+AGG | 0.611353 | 6_1:+98232812 | None:intergenic |
| TGAAGCATTCAAGTTTCACA+AGG | 0.617653 | 6_1:-98232990 | Msa0901500:CDS |
| ACAGAATGAGGATGGGCACA+GGG | 0.625351 | 6_1:-98232964 | Msa0901500:CDS |
| GAGGGATGACACCTATCTCA+AGG | 0.628407 | 6_1:+98232804 | None:intergenic |
| CCAAGAATCCAATGAACTCG+TGG | 0.629760 | 6_1:+98231952 | None:intergenic |
| TGGTTTGCAGACTGATGTAG+AGG | 0.630937 | 6_1:-98233264 | Msa0901500:intron |
| TCAATGAGTGGTACTGTAGG+TGG | 0.632454 | 6_1:-98232881 | Msa0901500:three_prime_UTR |
| GCAAACAAGAGGAAAATCAA+GGG | 0.638300 | 6_1:-98231888 | Msa0901500:three_prime_UTR |
| AAGGATCACAGAATGAGGAT+GGG | 0.655632 | 6_1:-98232971 | Msa0901500:CDS |
| TTATATCCAAGTTAGTAACA+AGG | 0.661740 | 6_1:-98231692 | Msa0901500:three_prime_UTR |
| GAGCCTATAATACATATGTG+AGG | 0.678941 | 6_1:-98232942 | Msa0901500:exon |
| TTAATGTCTGTTGACCAACA+TGG | 0.683651 | 6_1:-98231851 | Msa0901500:three_prime_UTR |
| TGGCAAATATAACACCAGAG+AGG | 0.777673 | 6_1:+98232148 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTAATTTTTAATGATAATT+TGG | - | chr6_1:98231668-98231687 | Msa0901500:three_prime_UTR | 10.0% |
| !!! | ATTTATAGAGTTTTAAAAAA+AGG | + | chr6_1:98232313-98232332 | None:intergenic | 10.0% |
| !!! | TTTTTAATGATAATTTGGAT+TGG | - | chr6_1:98231673-98231692 | Msa0901500:three_prime_UTR | 15.0% |
| !! | AAAAATAAACAGTTTATTGT+TGG | - | chr6_1:98232122-98232141 | Msa0901500:intron | 15.0% |
| !!! | TAATTAATTTAGAGTAAAGT+AGG | - | chr6_1:98233491-98233510 | Msa0901500:intron | 15.0% |
| !! | TTGTTCTTAGAATAAAAAAG+AGG | - | chr6_1:98231639-98231658 | Msa0901500:three_prime_UTR | 20.0% |
| !!! | GAGGAAATTTTAATTTTTTG+TGG | - | chr6_1:98231708-98231727 | Msa0901500:three_prime_UTR | 20.0% |
| !! | ATCAAAGTTTATGATGTTTA+AGG | - | chr6_1:98231797-98231816 | Msa0901500:three_prime_UTR | 20.0% |
| !!! | TGATCCATTTTCAATTTAAT+TGG | - | chr6_1:98233095-98233114 | Msa0901500:intron | 20.0% |
| !!! | TCATATTGATAATATTGTAC+TGG | + | chr6_1:98233121-98233140 | None:intergenic | 20.0% |
| !! | CTATATAAATCAACAAATTG+AGG | + | chr6_1:98233316-98233335 | None:intergenic | 20.0% |
| !!! | ATGTTATACATTTTTGTTTC+AGG | - | chr6_1:98233392-98233411 | Msa0901500:CDS | 20.0% |
| !!! | AATTATTTTCACAGATAAGA+AGG | + | chr6_1:98233748-98233767 | None:intergenic | 20.0% |
| !!! | TATCTGTGAAAATAATTTTG+TGG | - | chr6_1:98233751-98233770 | Msa0901500:intron | 20.0% |
| !! | AGAAAGCAAAAACAAATAAA+TGG | + | chr6_1:98233817-98233836 | None:intergenic | 20.0% |
| !!! | AATTTGGATTGGTTTTTATG+AGG | - | chr6_1:98231684-98231703 | Msa0901500:three_prime_UTR | 25.0% |
| !!! | TTTTAATTTTTTGTGGCTTG+AGG | - | chr6_1:98231715-98231734 | Msa0901500:three_prime_UTR | 25.0% |
| !! | TTGTTGTTGAGATTTAAGAA+TGG | - | chr6_1:98231868-98231887 | Msa0901500:three_prime_UTR | 25.0% |
| ! | ACTTCGATTCATAATATGTT+TGG | + | chr6_1:98232228-98232247 | None:intergenic | 25.0% |
| ! | AAAACTCTATAAATGCAATG+TGG | - | chr6_1:98232319-98232338 | Msa0901500:three_prime_UTR | 25.0% |
| ! | TGGAAACTGAAACAAAAAAT+GGG | + | chr6_1:98232373-98232392 | None:intergenic | 25.0% |
| ! | TTGGAAACTGAAACAAAAAA+TGG | + | chr6_1:98232374-98232393 | None:intergenic | 25.0% |
| ! | TTGTTAAGCACAATTGAAAA+GGG | + | chr6_1:98232644-98232663 | None:intergenic | 25.0% |
| ! | ATTGTTAAGCACAATTGAAA+AGG | + | chr6_1:98232645-98232664 | None:intergenic | 25.0% |
| ! | TGATTTAGTGTGTAGTTTAA+TGG | + | chr6_1:98232709-98232728 | None:intergenic | 25.0% |
| ! | AGAAAATTAGTTGCATTTCT+TGG | - | chr6_1:98233211-98233230 | Msa0901500:intron | 25.0% |
| ! | GAAAATTAGTTGCATTTCTT+GGG | - | chr6_1:98233212-98233231 | Msa0901500:intron | 25.0% |
| ! | ATAAATCAACAAATTGAGGT+AGG | + | chr6_1:98233312-98233331 | None:intergenic | 25.0% |
| !!! | ATTTTTGTTTCAGGTATTGT+TGG | - | chr6_1:98233401-98233420 | Msa0901500:intron | 25.0% |
| ! | GACAAATATTAGTAAGTTAG+TGG | - | chr6_1:98233610-98233629 | Msa0901500:intron | 25.0% |
| !!! | AGTTTTCAGGATTGAAATTT+TGG | - | chr6_1:98233640-98233659 | Msa0901500:intron | 25.0% |
| ! | TTATATCCAAGTTAGTAACA+AGG | - | chr6_1:98233714-98233733 | Msa0901500:intron | 25.0% |
| !!! | TGTTTTTGCTTTCTTTTGTT+TGG | - | chr6_1:98233823-98233842 | Msa0901500:intron | 25.0% |
| !!! | GATTGATTTTGACTAAATGA+TGG | - | chr6_1:98233903-98233922 | Msa0901500:CDS | 25.0% |
| !! | ATTTGTTTTCATGTCGTACA+AGG | - | chr6_1:98231762-98231781 | Msa0901500:three_prime_UTR | 30.0% |
| ! | GTTCTTAAGATTTTTGTGCT+GGG | - | chr6_1:98231819-98231838 | Msa0901500:three_prime_UTR | 30.0% |
| ! | TAATATTCCCTTTTCTCAGT+TGG | - | chr6_1:98231993-98232012 | Msa0901500:three_prime_UTR | 30.0% |
| ! | CCTTGATGATTTGAATTAAG+AGG | + | chr6_1:98232044-98232063 | None:intergenic | 30.0% |
| CCTCTTAATTCAAATCATCA+AGG | - | chr6_1:98232041-98232060 | Msa0901500:intron | 30.0% | |
| CATATTATGAATCGAAGTGA+TGG | - | chr6_1:98232230-98232249 | Msa0901500:three_prime_UTR | 30.0% | |
| CTTGATATTGTAAAGAATCG+CGG | - | chr6_1:98232280-98232299 | Msa0901500:three_prime_UTR | 30.0% | |
| ACAAAAAATGGGCATATGTA+TGG | + | chr6_1:98232362-98232381 | None:intergenic | 30.0% | |
| ! | TCAGTTTCCAATTGCATTTT+TGG | - | chr6_1:98232383-98232402 | Msa0901500:intron | 30.0% |
| ATGCCTCACATATGTATTAT+AGG | + | chr6_1:98232470-98232489 | None:intergenic | 30.0% | |
| !!! | AAACCGTTATTTTTTGCGAT+CGG | + | chr6_1:98232677-98232696 | None:intergenic | 30.0% |
| TCTGGTCAACACAATTAAAA+GGG | + | chr6_1:98232877-98232896 | None:intergenic | 30.0% | |
| TTTATTCAAATTCTGTTGCG+CGG | - | chr6_1:98233024-98233043 | Msa0901500:intron | 30.0% | |
| ! | GTTGATGAAGATTACCATAA+GGG | + | chr6_1:98233059-98233078 | None:intergenic | 30.0% |
| !! | AGTTGATGAAGATTACCATA+AGG | + | chr6_1:98233060-98233079 | None:intergenic | 30.0% |
| CTGGCCAATTAAATTGAAAA+TGG | + | chr6_1:98233102-98233121 | None:intergenic | 30.0% | |
| GAGATATAGATATTCCATGT+TGG | + | chr6_1:98233572-98233591 | None:intergenic | 30.0% | |
| CATGGAATATCTATATCTCT+AGG | - | chr6_1:98233573-98233592 | Msa0901500:intron | 30.0% | |
| ! | TTCAGGATTGAAATTTTGGA+CGG | - | chr6_1:98233644-98233663 | Msa0901500:intron | 30.0% |
| !! | AATTAGCCTTGTTACTAACT+TGG | + | chr6_1:98233723-98233742 | None:intergenic | 30.0% |
| ! | TTCATGTCGTACAAGGTTTT+TGG | - | chr6_1:98231769-98231788 | Msa0901500:three_prime_UTR | 35.0% |
| ! | GGTTCTTAAGATTTTTGTGC+TGG | - | chr6_1:98231818-98231837 | Msa0901500:three_prime_UTR | 35.0% |
| !! | AAAAGCACCAACTGAGAAAA+GGG | + | chr6_1:98232003-98232022 | None:intergenic | 35.0% |
| CCAAACACCAAAAATGCAAT+TGG | + | chr6_1:98232393-98232412 | None:intergenic | 35.0% | |
| !!! | CCAATTGCATTTTTGGTGTT+TGG | - | chr6_1:98232390-98232409 | Msa0901500:intron | 35.0% |
| ! | TGAAGCATTCAAGTTTCACA+AGG | - | chr6_1:98232416-98232435 | Msa0901500:intron | 35.0% |
| GAGCCTATAATACATATGTG+AGG | - | chr6_1:98232464-98232483 | Msa0901500:intron | 35.0% | |
| ! | TATGTGAGGCATCAATAGAA+TGG | - | chr6_1:98232478-98232497 | Msa0901500:intron | 35.0% |
| ! | CTTGCATTTTGTTCAATGAG+TGG | - | chr6_1:98232513-98232532 | Msa0901500:intron | 35.0% |
| !! | TTCTGGAGGTGGATTTATTT+TGG | - | chr6_1:98232569-98232588 | Msa0901500:intron | 35.0% |
| !! | TCTGGAGGTGGATTTATTTT+GGG | - | chr6_1:98232570-98232589 | Msa0901500:intron | 35.0% |
| CATTAGCGGTTATAGTGTAA+CGG | + | chr6_1:98232805-98232824 | None:intergenic | 35.0% | |
| CGCATATCATTGAACATTAG+CGG | + | chr6_1:98232819-98232838 | None:intergenic | 35.0% | |
| CTCTGGTCAACACAATTAAA+AGG | + | chr6_1:98232878-98232897 | None:intergenic | 35.0% | |
| CAATTCGCAATTGAAAACTC+TGG | + | chr6_1:98232895-98232914 | None:intergenic | 35.0% | |
| !!! | TACCTCATCAGTGTCTTTTT+TGG | - | chr6_1:98233162-98233181 | Msa0901500:intron | 35.0% |
| AATTAGTTGCATTTCTTGGG+AGG | - | chr6_1:98233215-98233234 | Msa0901500:intron | 35.0% | |
| ATTAGTTGCATTTCTTGGGA+GGG | - | chr6_1:98233216-98233235 | Msa0901500:intron | 35.0% | |
| AAGTAGGAATAGCAAACAAG+AGG | - | chr6_1:98233507-98233526 | Msa0901500:intron | 35.0% | |
| AGCAAACAAGAGGAAAATCA+AGG | - | chr6_1:98233517-98233536 | Msa0901500:intron | 35.0% | |
| GCAAACAAGAGGAAAATCAA+GGG | - | chr6_1:98233518-98233537 | Msa0901500:intron | 35.0% | |
| AATCAAGGGTTCATAGATGT+TGG | - | chr6_1:98233532-98233551 | Msa0901500:intron | 35.0% | |
| TTAATGTCTGTTGACCAACA+TGG | - | chr6_1:98233555-98233574 | Msa0901500:intron | 35.0% | |
| !!! | TAGTGGTTACGTTAGTTTTC+AGG | - | chr6_1:98233627-98233646 | Msa0901500:intron | 35.0% |
| !! | TTGCTTTCTTTTGTTTGGTG+TGG | - | chr6_1:98233828-98233847 | Msa0901500:intron | 35.0% |
| !! | AAATGCTTGGAGCATTGGTT+GGG | - | chr6_1:98231594-98231613 | Msa0901500:three_prime_UTR | 40.0% |
| !!! | GGATTGGTTTTTATGAGGTG+AGG | - | chr6_1:98231689-98231708 | Msa0901500:three_prime_UTR | 40.0% |
| !! | CAAAAGCACCAACTGAGAAA+AGG | + | chr6_1:98232004-98232023 | None:intergenic | 40.0% |
| !! | AGTTGGTGCTTTTGTCTGTT+TGG | - | chr6_1:98232010-98232029 | Msa0901500:intron | 40.0% |
| AGAACTCTTAGTGAGTGAGA+GGG | + | chr6_1:98232074-98232093 | None:intergenic | 40.0% | |
| TAGAACTCTTAGTGAGTGAG+AGG | + | chr6_1:98232075-98232094 | None:intergenic | 40.0% | |
| TCAAGAATCACGATGAGACT+GGG | + | chr6_1:98232265-98232284 | None:intergenic | 40.0% | |
| ATCAAGAATCACGATGAGAC+TGG | + | chr6_1:98232266-98232285 | None:intergenic | 40.0% | |
| TTCACAAGGATCACAGAATG+AGG | - | chr6_1:98232430-98232449 | Msa0901500:intron | 40.0% | |
| AAGGATCACAGAATGAGGAT+GGG | - | chr6_1:98232435-98232454 | Msa0901500:intron | 40.0% | |
| TGTTCAATGAGTGGTACTGT+AGG | - | chr6_1:98232522-98232541 | Msa0901500:intron | 40.0% | |
| !!! | CTGGAGGTGGATTTATTTTG+GGG | - | chr6_1:98232571-98232590 | Msa0901500:intron | 40.0% |
| GGAACATATAGTGTACCTGA+GGG | + | chr6_1:98232623-98232642 | None:intergenic | 40.0% | |
| GAGCCGATCGCAAAAAATAA+CGG | - | chr6_1:98232671-98232690 | Msa0901500:intron | 40.0% | |
| AGCCAAAAAAGACACTGATG+AGG | + | chr6_1:98233167-98233186 | None:intergenic | 40.0% | |
| !!! | TCATCAGTGTCTTTTTTGGC+TGG | - | chr6_1:98233166-98233185 | Msa0901500:intron | 40.0% |
| GTCATTGTATTCATCCTCTC+TGG | - | chr6_1:98233244-98233263 | Msa0901500:CDS | 40.0% | |
| TGGCAAATATAACACCAGAG+AGG | + | chr6_1:98233261-98233280 | None:intergenic | 40.0% | |
| TAGGTGTCCATTATTACCCA+TGG | + | chr6_1:98233293-98233312 | None:intergenic | 40.0% | |
| ATATACAGCCACGAGTTCAT+TGG | - | chr6_1:98233446-98233465 | Msa0901500:intron | 40.0% | |
| CACGAGTTCATTGGATTCTT+GGG | - | chr6_1:98233455-98233474 | Msa0901500:intron | 40.0% | |
| GATATCTCTTAGCTGCTTCT+TGG | - | chr6_1:98233685-98233704 | Msa0901500:intron | 40.0% | |
| !!! | CTTTTGTTTGGTGTGGAGTT+TGG | - | chr6_1:98233835-98233854 | Msa0901500:intron | 40.0% |
| ACAGCCATAGTGTGTTCCTT+GGG | - | chr6_1:98231526-98231545 | Msa0901500:three_prime_UTR | 45.0% | |
| AGTTGATTGAAGTGTGCCCA+AGG | + | chr6_1:98231545-98231564 | None:intergenic | 45.0% | |
| TCGAGCATAAGCCAAATGCT+TGG | - | chr6_1:98231581-98231600 | Msa0901500:three_prime_UTR | 45.0% | |
| AAGCCAAATGCTTGGAGCAT+TGG | - | chr6_1:98231589-98231608 | Msa0901500:three_prime_UTR | 45.0% | |
| CAACCAATGCTCCAAGCATT+TGG | + | chr6_1:98231595-98231614 | None:intergenic | 45.0% | |
| !! | CAAATGCTTGGAGCATTGGT+TGG | - | chr6_1:98231593-98231612 | Msa0901500:three_prime_UTR | 45.0% |
| ! | TGGTTTGCAGACTGATGTAG+AGG | - | chr6_1:98232142-98232161 | Msa0901500:three_prime_UTR | 45.0% |
| ATGTAGAGGACTGCAGTGTA+TGG | - | chr6_1:98232156-98232175 | Msa0901500:three_prime_UTR | 45.0% | |
| AGGACTGCAGTGTATGGTAT+TGG | - | chr6_1:98232162-98232181 | Msa0901500:three_prime_UTR | 45.0% | |
| GGACTGCAGTGTATGGTATT+GGG | - | chr6_1:98232163-98232182 | Msa0901500:three_prime_UTR | 45.0% | |
| ! | GTATGGTATTGGGTGCTCTT+CGG | - | chr6_1:98232173-98232192 | Msa0901500:three_prime_UTR | 45.0% |
| ATGAATCGAAGTGATGGTCG+CGG | - | chr6_1:98232236-98232255 | Msa0901500:three_prime_UTR | 45.0% | |
| CAAGGATCACAGAATGAGGA+TGG | - | chr6_1:98232434-98232453 | Msa0901500:intron | 45.0% | |
| TCAATGAGTGGTACTGTAGG+TGG | - | chr6_1:98232525-98232544 | Msa0901500:intron | 45.0% | |
| GGTACTGTAGGTGGAATAGT+TGG | - | chr6_1:98232534-98232553 | Msa0901500:intron | 45.0% | |
| ACTGTAGGTGGAATAGTTGG+AGG | - | chr6_1:98232537-98232556 | Msa0901500:intron | 45.0% | |
| GGAATAGTTGGAGGCTTACT+TGG | - | chr6_1:98232546-98232565 | Msa0901500:intron | 45.0% | |
| ACACCTATCTCAAGGAGAAG+AGG | + | chr6_1:98232597-98232616 | None:intergenic | 45.0% | |
| GGGAACATATAGTGTACCTG+AGG | + | chr6_1:98232624-98232643 | None:intergenic | 45.0% | |
| !! | TTGACCGGTGTTGTCAATTG+CGG | - | chr6_1:98232750-98232769 | Msa0901500:intron | 45.0% |
| TGATCCGCAATTGACAACAC+CGG | + | chr6_1:98232757-98232776 | None:intergenic | 45.0% | |
| GTGTTGTCAATTGCGGATCA+CGG | - | chr6_1:98232757-98232776 | Msa0901500:intron | 45.0% | |
| !!! | TGTCTTTTTTGGCTGGCTTC+TGG | - | chr6_1:98233173-98233192 | Msa0901500:intron | 45.0% |
| !!! | GTCTTTTTTGGCTGGCTTCT+GGG | - | chr6_1:98233174-98233193 | Msa0901500:intron | 45.0% |
| !!! | TCTTTTTTGGCTGGCTTCTG+GGG | - | chr6_1:98233175-98233194 | Msa0901500:intron | 45.0% |
| GCTCTCACCATGGGTAATAA+TGG | - | chr6_1:98233283-98233302 | Msa0901500:intron | 45.0% | |
| CCAAGAATCCAATGAACTCG+TGG | + | chr6_1:98233457-98233476 | None:intergenic | 45.0% | |
| CCACGAGTTCATTGGATTCT+TGG | - | chr6_1:98233454-98233473 | Msa0901500:intron | 45.0% | |
| CACAGCCATAGTGTGTTCCT+TGG | - | chr6_1:98231525-98231544 | Msa0901500:three_prime_UTR | 50.0% | |
| TGTGCCCAAGGAACACACTA+TGG | + | chr6_1:98231533-98231552 | None:intergenic | 50.0% | |
| ACAGAATGAGGATGGGCACA+GGG | - | chr6_1:98232442-98232461 | Msa0901500:intron | 50.0% | |
| GTTGGAGGCTTACTTGGTTC+TGG | - | chr6_1:98232552-98232571 | Msa0901500:intron | 50.0% | |
| GAGGGATGACACCTATCTCA+AGG | + | chr6_1:98232605-98232624 | None:intergenic | 50.0% | |
| ! | TGAGATAGGTGTCATCCCTC+AGG | - | chr6_1:98232605-98232624 | Msa0901500:intron | 50.0% |
| ! | TTAGCCGCAGTTGTGTTGAC+CGG | - | chr6_1:98232735-98232754 | Msa0901500:intron | 50.0% |
| AACACCGGTCAACACAACTG+CGG | + | chr6_1:98232742-98232761 | None:intergenic | 50.0% | |
| ATTTGCCAGTGCTCTCACCA+TGG | - | chr6_1:98233273-98233292 | Msa0901500:intron | 50.0% | |
| TTTGCCAGTGCTCTCACCAT+GGG | - | chr6_1:98233274-98233293 | Msa0901500:intron | 50.0% | |
| ! | ATTACCCATGGTGAGAGCAC+TGG | + | chr6_1:98233281-98233300 | None:intergenic | 50.0% |
| CACAGAATGAGGATGGGCAC+AGG | - | chr6_1:98232441-98232460 | Msa0901500:intron | 55.0% | |
| !! | GGAGGCTTACTTGGTTCTGG+AGG | - | chr6_1:98232555-98232574 | Msa0901500:intron | 55.0% |
| !! | GGCTTACTTGGTTCTGGAGG+TGG | - | chr6_1:98232558-98232577 | Msa0901500:intron | 55.0% |
| GGGCCTCTTCTCCTTGAGAT+AGG | - | chr6_1:98232591-98232610 | Msa0901500:intron | 55.0% | |
| CGCGGTAACGCTATCCCTTA+TGG | - | chr6_1:98233042-98233061 | Msa0901500:intron | 55.0% | |
| ! | TTGGGTGCTCTTCGGCTTGC+AGG | - | chr6_1:98232181-98232200 | Msa0901500:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 98231487 | 98233941 | 98231487 | ID=Msa0901500;Name=Msa0901500 |
| chr6_1 | mRNA | 98231487 | 98233941 | 98231487 | ID=Msa0901500-mRNA-1;Parent=Msa0901500;Name=Msa0901500-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.8|0.83|0.83|0.6|0.5|6|916|78 |
| chr6_1 | exon | 98231487 | 98232014 | 98231487 | ID=Msa0901500-mRNA-1:exon:17298;Parent=Msa0901500-mRNA-1 |
| chr6_1 | exon | 98232133 | 98232367 | 98232133 | ID=Msa0901500-mRNA-1:exon:17297;Parent=Msa0901500-mRNA-1 |
| chr6_1 | exon | 98232802 | 98233041 | 98232802 | ID=Msa0901500-mRNA-1:exon:17296;Parent=Msa0901500-mRNA-1 |
| chr6_1 | exon | 98233226 | 98233276 | 98233226 | ID=Msa0901500-mRNA-1:exon:17295;Parent=Msa0901500-mRNA-1 |
| chr6_1 | exon | 98233366 | 98233416 | 98233366 | ID=Msa0901500-mRNA-1:exon:17294;Parent=Msa0901500-mRNA-1 |
| chr6_1 | exon | 98233894 | 98233941 | 98233894 | ID=Msa0901500-mRNA-1:exon:17293;Parent=Msa0901500-mRNA-1 |
| chr6_1 | CDS | 98233894 | 98233941 | 98233894 | ID=Msa0901500-mRNA-1:cds;Parent=Msa0901500-mRNA-1 |
| chr6_1 | CDS | 98233366 | 98233416 | 98233366 | ID=Msa0901500-mRNA-1:cds;Parent=Msa0901500-mRNA-1 |
| chr6_1 | CDS | 98233226 | 98233276 | 98233226 | ID=Msa0901500-mRNA-1:cds;Parent=Msa0901500-mRNA-1 |
| chr6_1 | CDS | 98232955 | 98233041 | 98232955 | ID=Msa0901500-mRNA-1:cds;Parent=Msa0901500-mRNA-1 |
| chr6_1 | three_prime_UTR | 98232802 | 98232954 | 98232802 | ID=Msa0901500-mRNA-1:three_prime_utr;Parent=Msa0901500-mRNA-1 |
| chr6_1 | three_prime_UTR | 98232133 | 98232367 | 98232133 | ID=Msa0901500-mRNA-1:three_prime_utr;Parent=Msa0901500-mRNA-1 |
| chr6_1 | three_prime_UTR | 98231487 | 98232014 | 98231487 | ID=Msa0901500-mRNA-1:three_prime_utr;Parent=Msa0901500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
