Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0889850 | XP_003601199.1 | 67.164 | 67 | 7 | 1 | 1 | 52 | 1 | 67 | 9.77e-19 | 88.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0889850 | sp|Q8LPH6|MYB86_ARATH | 62.687 | 67 | 10 | 1 | 1 | 52 | 1 | 67 | 3.02e-19 | 81.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0889850 | G7J4T2 | 67.164 | 67 | 7 | 1 | 1 | 52 | 1 | 67 | 4.67e-19 | 88.2 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016570 | Msa0889850 | 0.821148 | 4.710478e-53 | -8.615850e-47 |
| Msa0016580 | Msa0889850 | 0.816556 | 5.203266e-52 | -8.615850e-47 |
| Msa0102070 | Msa0889850 | 0.804604 | 1.994275e-49 | -8.615850e-47 |
| Msa0110270 | Msa0889850 | 0.812506 | 4.097024e-51 | -8.615850e-47 |
| Msa0694370 | Msa0889850 | 0.804720 | 1.886543e-49 | -8.615850e-47 |
| Msa0726140 | Msa0889850 | 0.804912 | 1.720277e-49 | -8.615850e-47 |
| Msa0743810 | Msa0889850 | 0.816240 | 6.124254e-52 | -8.615850e-47 |
| Msa0745060 | Msa0889850 | 0.816499 | 5.358774e-52 | -8.615850e-47 |
| Msa0783160 | Msa0889850 | 0.811501 | 6.782690e-51 | -8.615850e-47 |
| Msa0787600 | Msa0889850 | 0.804101 | 2.539181e-49 | -8.615850e-47 |
| Msa0825860 | Msa0889850 | 0.812254 | 4.650927e-51 | -8.615850e-47 |
| Msa0142220 | Msa0889850 | 0.814653 | 1.381004e-51 | -8.615850e-47 |
| Msa0232850 | Msa0889850 | 0.807778 | 4.280998e-50 | -8.615850e-47 |
| Msa0386580 | Msa0889850 | 0.801771 | 7.694647e-49 | -8.615850e-47 |
| Msa0452900 | Msa0889850 | 0.802764 | 4.804342e-49 | -8.615850e-47 |
| Msa0267010 | Msa0889850 | 0.802617 | 5.152214e-49 | -8.615850e-47 |
| Msa0270520 | Msa0889850 | 0.827264 | 1.722278e-54 | -8.615850e-47 |
| Msa0342240 | Msa0889850 | 0.816194 | 6.271534e-52 | -8.615850e-47 |
| Msa0360510 | Msa0889850 | 0.800922 | 1.148405e-48 | -8.615850e-47 |
| Msa0363300 | Msa0889850 | 0.801569 | 8.465627e-49 | -8.615850e-47 |
| Msa0498490 | Msa0889850 | 0.803217 | 3.873611e-49 | -8.615850e-47 |
| Msa0846210 | Msa0889850 | 0.806850 | 6.733080e-50 | -8.615850e-47 |
| Msa0846350 | Msa0889850 | 0.805113 | 1.561521e-49 | -8.615850e-47 |
| Msa0889850 | Msa0954910 | 0.809209 | 2.118973e-50 | -8.615850e-47 |
| Msa0889850 | Msa0989060 | 0.803245 | 3.822432e-49 | -8.615850e-47 |
| Msa0889850 | Msa0991110 | 0.827119 | 1.865209e-54 | -8.615850e-47 |
| Msa0889850 | Msa1016280 | 0.824176 | 9.301412e-54 | -8.615850e-47 |
| Msa0889850 | Msa1025360 | 0.806052 | 9.918943e-50 | -8.615850e-47 |
| Msa0889850 | Msa1044840 | 0.808735 | 2.676521e-50 | -8.615850e-47 |
| Msa0889850 | Msa1092990 | 0.832731 | 7.995812e-56 | -8.615850e-47 |
| Msa0889850 | Msa1100980 | 0.805610 | 1.228344e-49 | -8.615850e-47 |
| Msa0889850 | Msa1114030 | 0.801655 | 8.128102e-49 | -8.615850e-47 |
| Msa0889850 | Msa1116260 | 0.801696 | 7.971498e-49 | -8.615850e-47 |
| Msa0889850 | Msa1136090 | 0.814200 | 1.738983e-51 | -8.615850e-47 |
| Msa0889850 | Msa1146110 | 0.815198 | 1.045536e-51 | -8.615850e-47 |
| Msa0889850 | Msa1187940 | 0.818594 | 1.806582e-52 | -8.615850e-47 |
| Msa0889850 | Msa1187950 | 0.820794 | 5.683056e-53 | -8.615850e-47 |
| Msa0889850 | Msa1269670 | 0.807906 | 4.020907e-50 | -8.615850e-47 |
| Msa0889850 | Msa1270230 | 0.820088 | 8.249625e-53 | -8.615850e-47 |
| Msa0889850 | Msa1270270 | 0.803541 | 3.318444e-49 | -8.615850e-47 |
| Msa0889850 | Msa1273230 | 0.800273 | 1.557242e-48 | -8.615850e-47 |
| Msa0889850 | Msa1283330 | 0.811261 | 7.647888e-51 | -8.615850e-47 |
| Msa0889850 | Msa1285930 | 0.802192 | 6.304547e-49 | -8.615850e-47 |
| Msa0889850 | Msa1287810 | 0.819233 | 1.293089e-52 | -8.615850e-47 |
| Msa0889850 | Msa1307890 | 0.802437 | 5.611870e-49 | -8.615850e-47 |
| Msa0889850 | Msa1404000 | 0.805240 | 1.468476e-49 | -8.615850e-47 |
| Msa0889850 | Msa1433120 | 0.805649 | 1.205722e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0889850 | MtrunA17_Chr3g0117091 | 67.164 | 67 | 7 | 1 | 1 | 52 | 1 | 67 | 8.99e-23 | 88.2 |
| Msa0889850 | MtrunA17_Chr4g0058631 | 65.672 | 67 | 8 | 1 | 1 | 52 | 1 | 67 | 1.12e-21 | 85.1 |
| Msa0889850 | MtrunA17_Chr7g0270891 | 62.687 | 67 | 10 | 1 | 1 | 52 | 1 | 67 | 1.78e-20 | 82.0 |
| Msa0889850 | MtrunA17_Chr1g0193371 | 62.687 | 67 | 10 | 1 | 1 | 52 | 1 | 67 | 3.41e-20 | 81.3 |
| Msa0889850 | MtrunA17_Chr7g0271241 | 62.687 | 67 | 10 | 1 | 1 | 52 | 1 | 67 | 4.69e-20 | 80.9 |
| Msa0889850 | MtrunA17_Chr1g0211161 | 63.077 | 65 | 9 | 1 | 3 | 52 | 4 | 68 | 1.18e-19 | 78.2 |
| Msa0889850 | MtrunA17_Chr1g0193801 | 61.194 | 67 | 11 | 1 | 1 | 52 | 1 | 67 | 2.62e-19 | 79.0 |
| Msa0889850 | MtrunA17_Chr2g0330041 | 56.716 | 67 | 14 | 1 | 1 | 52 | 1 | 67 | 6.17e-19 | 77.8 |
| Msa0889850 | MtrunA17_Chr8g0342511 | 50.667 | 75 | 22 | 1 | 1 | 60 | 1 | 75 | 1.47e-18 | 72.0 |
| Msa0889850 | MtrunA17_Chr8g0342541 | 52.055 | 73 | 20 | 1 | 1 | 58 | 1 | 73 | 2.17e-18 | 76.3 |
| Msa0889850 | MtrunA17_Chr8g0342521 | 52.055 | 73 | 20 | 2 | 1 | 58 | 1 | 73 | 1.21e-17 | 73.9 |
| Msa0889850 | MtrunA17_Chr8g0342531 | 53.731 | 67 | 16 | 1 | 1 | 52 | 1 | 67 | 2.26e-16 | 68.2 |
| Msa0889850 | MtrunA17_Chr8g0387421 | 50.725 | 69 | 19 | 1 | 1 | 54 | 1 | 69 | 3.89e-16 | 69.7 |
| Msa0889850 | MtrunA17_Chr8g0342461 | 48.649 | 74 | 22 | 1 | 1 | 58 | 1 | 74 | 4.65e-16 | 66.6 |
| Msa0889850 | MtrunA17_Chr8g0342471 | 48.649 | 74 | 22 | 1 | 1 | 58 | 1 | 74 | 4.80e-16 | 66.6 |
| Msa0889850 | MtrunA17_Chr8g0342481 | 50.000 | 74 | 21 | 1 | 1 | 58 | 1 | 74 | 5.71e-16 | 69.7 |
| Msa0889850 | MtrunA17_Chr5g0397231 | 50.725 | 69 | 19 | 1 | 1 | 54 | 1 | 69 | 9.01e-16 | 68.9 |
| Msa0889850 | MtrunA17_Chr2g0309911 | 52.239 | 67 | 16 | 2 | 1 | 52 | 1 | 66 | 1.03e-14 | 65.9 |
| Msa0889850 | MtrunA17_Chr8g0385321 | 52.239 | 67 | 17 | 1 | 1 | 52 | 1 | 67 | 1.41e-13 | 62.8 |
| Msa0889850 | MtrunA17_Chr4g0042611 | 43.836 | 73 | 26 | 1 | 1 | 58 | 1 | 73 | 3.29e-13 | 58.2 |
| Msa0889850 | MtrunA17_Chr3g0115821 | 46.269 | 67 | 21 | 1 | 1 | 52 | 1 | 67 | 4.21e-13 | 61.6 |
| Msa0889850 | MtrunA17_Chr3g0131121 | 49.254 | 67 | 19 | 1 | 1 | 52 | 1 | 67 | 4.60e-13 | 61.2 |
| Msa0889850 | MtrunA17_Chr6g0453471 | 45.205 | 73 | 25 | 1 | 1 | 58 | 1 | 73 | 7.68e-13 | 60.8 |
| Msa0889850 | MtrunA17_Chr2g0328771 | 60.345 | 58 | 4 | 2 | 12 | 52 | 20 | 75 | 1.33e-12 | 60.1 |
| Msa0889850 | MtrunA17_Chr4g0032401 | 57.143 | 56 | 9 | 1 | 12 | 52 | 17 | 72 | 1.48e-12 | 60.1 |
| Msa0889850 | MtrunA17_Chr1g0203411 | 44.776 | 67 | 22 | 1 | 1 | 52 | 1 | 67 | 1.51e-12 | 59.7 |
| Msa0889850 | MtrunA17_Chr4g0039971 | 46.269 | 67 | 21 | 1 | 1 | 52 | 2 | 68 | 3.07e-12 | 58.9 |
| Msa0889850 | MtrunA17_Chr3g0110351 | 49.254 | 67 | 19 | 1 | 1 | 52 | 1 | 67 | 3.62e-12 | 58.9 |
| Msa0889850 | MtrunA17_Chr7g0228891 | 52.239 | 67 | 17 | 2 | 1 | 52 | 1 | 67 | 4.02e-12 | 58.5 |
| Msa0889850 | MtrunA17_Chr5g0434571 | 49.254 | 67 | 19 | 1 | 1 | 52 | 37 | 103 | 7.25e-12 | 58.2 |
| Msa0889850 | MtrunA17_Chr4g0042671 | 43.836 | 73 | 26 | 1 | 1 | 58 | 1 | 73 | 1.16e-11 | 57.4 |
| Msa0889850 | MtrunA17_Chr7g0217741 | 43.836 | 73 | 26 | 1 | 1 | 58 | 1 | 73 | 1.21e-11 | 57.4 |
| Msa0889850 | MtrunA17_Chr6g0470971 | 56.364 | 55 | 9 | 1 | 13 | 52 | 15 | 69 | 1.39e-11 | 57.0 |
| Msa0889850 | MtrunA17_Chr7g0274581 | 42.029 | 69 | 25 | 1 | 1 | 54 | 1 | 69 | 1.42e-11 | 56.2 |
| Msa0889850 | MtrunA17_Chr1g0203441 | 54.386 | 57 | 11 | 1 | 13 | 54 | 14 | 70 | 1.47e-11 | 57.0 |
| Msa0889850 | MtrunA17_Chr2g0311221 | 45.455 | 66 | 21 | 1 | 2 | 52 | 4 | 69 | 1.62e-11 | 57.0 |
| Msa0889850 | MtrunA17_Chr1g0152011 | 45.588 | 68 | 21 | 1 | 1 | 52 | 1 | 68 | 1.68e-11 | 57.0 |
| Msa0889850 | MtrunA17_Chr3g0103281 | 45.455 | 66 | 21 | 1 | 1 | 51 | 1 | 66 | 1.81e-11 | 57.0 |
| Msa0889850 | MtrunA17_Chr7g0261281 | 44.776 | 67 | 22 | 1 | 1 | 52 | 1 | 67 | 2.02e-11 | 56.6 |
| Msa0889850 | MtrunA17_Chr3g0088461 | 54.237 | 59 | 12 | 1 | 9 | 52 | 19 | 77 | 2.07e-11 | 56.6 |
| Msa0889850 | MtrunA17_Chr3g0135311 | 47.059 | 68 | 20 | 2 | 1 | 52 | 1 | 68 | 2.16e-11 | 56.6 |
| Msa0889850 | MtrunA17_Chr5g0410961 | 43.478 | 69 | 24 | 1 | 1 | 54 | 1 | 69 | 2.43e-11 | 56.6 |
| Msa0889850 | MtrunA17_Chr2g0323411 | 43.836 | 73 | 26 | 1 | 1 | 58 | 1 | 73 | 2.54e-11 | 56.6 |
| Msa0889850 | MtrunA17_Chr4g0037141 | 47.761 | 67 | 20 | 2 | 1 | 52 | 1 | 67 | 2.61e-11 | 56.2 |
| Msa0889850 | MtrunA17_Chr1g0151941 | 43.284 | 67 | 22 | 2 | 1 | 51 | 1 | 67 | 2.90e-11 | 55.8 |
| Msa0889850 | MtrunA17_Chr6g0452271 | 43.662 | 71 | 19 | 2 | 1 | 53 | 1 | 68 | 2.93e-11 | 56.2 |
| Msa0889850 | MtrunA17_Chr2g0281071 | 48.571 | 70 | 20 | 3 | 1 | 54 | 1 | 70 | 3.82e-11 | 55.8 |
| Msa0889850 | MtrunA17_Chr7g0264641 | 47.059 | 68 | 20 | 2 | 1 | 52 | 1 | 68 | 5.06e-11 | 55.5 |
| Msa0889850 | MtrunA17_Chr5g0400821 | 44.776 | 67 | 21 | 1 | 1 | 51 | 1 | 67 | 6.70e-11 | 55.1 |
| Msa0889850 | MtrunA17_Chr4g0057031 | 46.269 | 67 | 21 | 1 | 1 | 52 | 1 | 67 | 6.91e-11 | 55.1 |
| Msa0889850 | MtrunA17_Chr2g0323351 | 46.269 | 67 | 21 | 1 | 1 | 52 | 1 | 67 | 9.59e-11 | 54.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0889850 | AT5G26660.1 | 62.687 | 67 | 10 | 1 | 1 | 52 | 1 | 67 | 3.07e-20 | 81.6 |
| Msa0889850 | AT4G01680.3 | 61.194 | 67 | 11 | 1 | 1 | 52 | 1 | 67 | 1.49e-19 | 78.2 |
| Msa0889850 | AT1G09540.1 | 61.194 | 67 | 11 | 1 | 1 | 52 | 1 | 67 | 2.60e-19 | 79.3 |
| Msa0889850 | AT4G01680.1 | 61.194 | 67 | 11 | 1 | 1 | 52 | 1 | 67 | 3.15e-19 | 78.6 |
| Msa0889850 | AT1G57560.1 | 61.194 | 67 | 11 | 1 | 1 | 52 | 1 | 67 | 7.62e-19 | 77.4 |
| Msa0889850 | AT1G57560.2 | 61.194 | 67 | 11 | 1 | 1 | 52 | 1 | 67 | 9.29e-19 | 76.6 |
| Msa0889850 | AT4G01680.2 | 51.899 | 79 | 11 | 1 | 1 | 52 | 1 | 79 | 1.84e-17 | 73.9 |
| Msa0889850 | AT3G13890.2 | 55.224 | 67 | 15 | 1 | 1 | 52 | 1 | 67 | 3.17e-17 | 73.6 |
| Msa0889850 | AT3G13890.1 | 48.684 | 76 | 15 | 1 | 1 | 52 | 1 | 76 | 6.36e-16 | 69.7 |
| Msa0889850 | AT1G63910.1 | 50.725 | 69 | 19 | 1 | 1 | 54 | 1 | 69 | 1.42e-15 | 68.9 |
| Msa0889850 | AT3G12720.1 | 52.239 | 67 | 16 | 2 | 1 | 52 | 12 | 77 | 6.25e-14 | 63.9 |
| Msa0889850 | AT3G02940.2 | 47.761 | 67 | 20 | 1 | 1 | 52 | 1 | 67 | 1.84e-13 | 62.8 |
| Msa0889850 | AT3G02940.1 | 47.761 | 67 | 20 | 1 | 1 | 52 | 1 | 67 | 2.16e-13 | 62.8 |
| Msa0889850 | AT3G02940.3 | 47.761 | 67 | 20 | 1 | 1 | 52 | 1 | 67 | 2.16e-13 | 62.8 |
| Msa0889850 | AT4G12350.1 | 47.761 | 67 | 20 | 1 | 1 | 52 | 1 | 67 | 2.97e-13 | 62.0 |
| Msa0889850 | AT4G28110.1 | 45.205 | 73 | 25 | 2 | 1 | 58 | 1 | 73 | 4.18e-13 | 61.6 |
| Msa0889850 | AT1G34670.1 | 46.269 | 67 | 21 | 1 | 1 | 52 | 1 | 67 | 4.77e-13 | 61.6 |
| Msa0889850 | AT3G01140.2 | 45.205 | 73 | 25 | 1 | 1 | 58 | 1 | 73 | 5.25e-13 | 61.6 |
| Msa0889850 | AT2G31180.1 | 46.269 | 67 | 21 | 1 | 1 | 52 | 1 | 67 | 5.57e-13 | 60.8 |
| Msa0889850 | AT5G15310.1 | 46.377 | 69 | 22 | 1 | 1 | 54 | 1 | 69 | 1.19e-12 | 60.5 |
| Msa0889850 | AT5G15310.2 | 46.377 | 69 | 22 | 1 | 1 | 54 | 1 | 69 | 1.41e-12 | 60.5 |
| Msa0889850 | AT5G16600.1 | 50.746 | 67 | 18 | 1 | 1 | 52 | 1 | 67 | 1.42e-12 | 60.5 |
| Msa0889850 | AT4G05100.1 | 50.000 | 70 | 19 | 3 | 1 | 54 | 1 | 70 | 1.62e-12 | 60.1 |
| Msa0889850 | AT1G06180.1 | 49.254 | 67 | 19 | 1 | 1 | 52 | 1 | 67 | 1.74e-12 | 59.7 |
| Msa0889850 | AT5G15310.4 | 46.377 | 69 | 22 | 1 | 1 | 54 | 1 | 69 | 1.88e-12 | 59.7 |
| Msa0889850 | AT1G35515.1 | 46.269 | 67 | 21 | 1 | 1 | 52 | 1 | 67 | 2.11e-12 | 58.9 |
| Msa0889850 | AT1G79180.1 | 48.485 | 66 | 19 | 1 | 2 | 52 | 4 | 69 | 3.98e-12 | 58.9 |
| Msa0889850 | AT2G16720.1 | 47.761 | 67 | 20 | 1 | 1 | 52 | 1 | 67 | 3.99e-12 | 58.9 |
| Msa0889850 | AT3G61250.1 | 47.761 | 67 | 20 | 1 | 1 | 52 | 1 | 67 | 4.49e-12 | 58.9 |
| Msa0889850 | AT5G16770.4 | 44.776 | 67 | 22 | 1 | 1 | 52 | 1 | 67 | 5.33e-12 | 58.5 |
| Msa0889850 | AT5G16770.3 | 44.776 | 67 | 22 | 1 | 1 | 52 | 1 | 67 | 5.33e-12 | 58.5 |
| Msa0889850 | AT5G60890.1 | 41.791 | 67 | 24 | 1 | 1 | 52 | 1 | 67 | 5.85e-12 | 58.5 |
| Msa0889850 | AT5G56110.1 | 45.455 | 66 | 21 | 1 | 1 | 51 | 1 | 66 | 5.94e-12 | 58.5 |
| Msa0889850 | AT4G21440.1 | 47.826 | 69 | 21 | 2 | 1 | 54 | 1 | 69 | 7.25e-12 | 58.5 |
| Msa0889850 | AT3G28470.1 | 47.059 | 68 | 21 | 2 | 1 | 53 | 1 | 68 | 7.41e-12 | 58.2 |
| Msa0889850 | AT5G16770.1 | 44.776 | 67 | 22 | 1 | 1 | 52 | 1 | 67 | 7.70e-12 | 58.2 |
| Msa0889850 | AT5G16770.2 | 44.776 | 67 | 22 | 1 | 1 | 52 | 1 | 67 | 7.70e-12 | 58.2 |
| Msa0889850 | AT1G66230.1 | 49.254 | 67 | 19 | 1 | 1 | 52 | 1 | 67 | 9.65e-12 | 57.8 |
| Msa0889850 | AT5G52260.1 | 54.237 | 59 | 12 | 2 | 9 | 52 | 9 | 67 | 1.06e-11 | 57.8 |
| Msa0889850 | AT4G22680.1 | 47.761 | 67 | 20 | 1 | 1 | 52 | 1 | 67 | 1.10e-11 | 57.8 |
| Msa0889850 | AT4G09460.1 | 46.269 | 67 | 21 | 1 | 1 | 52 | 1 | 67 | 1.63e-11 | 57.0 |
| Msa0889850 | AT5G23000.1 | 44.118 | 68 | 22 | 1 | 1 | 52 | 1 | 68 | 1.68e-11 | 57.4 |
| Msa0889850 | AT4G34990.1 | 47.761 | 67 | 20 | 1 | 1 | 52 | 1 | 67 | 1.83e-11 | 57.0 |
| Msa0889850 | AT4G25560.1 | 55.357 | 56 | 10 | 2 | 13 | 53 | 11 | 66 | 2.54e-11 | 56.6 |
| Msa0889850 | AT4G38620.1 | 47.761 | 67 | 20 | 1 | 1 | 52 | 1 | 67 | 2.86e-11 | 56.6 |
| Msa0889850 | AT3G23250.1 | 43.284 | 67 | 23 | 1 | 1 | 52 | 1 | 67 | 4.23e-11 | 56.2 |
| Msa0889850 | AT5G65790.1 | 44.118 | 68 | 22 | 1 | 1 | 52 | 1 | 68 | 4.83e-11 | 56.2 |
| Msa0889850 | AT1G18570.1 | 42.647 | 68 | 23 | 2 | 1 | 52 | 1 | 68 | 5.10e-11 | 55.8 |
| Msa0889850 | AT3G01140.1 | 44.118 | 68 | 23 | 1 | 6 | 58 | 49 | 116 | 5.30e-11 | 55.8 |
| Msa0889850 | AT3G48920.1 | 52.542 | 59 | 13 | 2 | 9 | 52 | 15 | 73 | 5.47e-11 | 55.8 |
| Msa0889850 | AT5G14340.1 | 47.761 | 67 | 20 | 1 | 1 | 52 | 13 | 79 | 6.46e-11 | 55.5 |
| Msa0889850 | AT3G08500.1 | 55.932 | 59 | 11 | 2 | 9 | 52 | 27 | 85 | 6.67e-11 | 55.8 |
| Msa0889850 | AT5G57620.1 | 44.118 | 68 | 22 | 1 | 1 | 52 | 1 | 68 | 9.14e-11 | 55.5 |
Find 10 sgRNAs with CRISPR-Local
Find 19 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGCTTCTCATCTTCTTC+AGG | 0.263770 | 6_1:-59995980 | None:intergenic |
| AAATACTAAGAAAATGTTTA+TGG | 0.293080 | 6_1:+59995954 | Msa0889850:CDS |
| GATCTTTCTCTCTTCAAATC+AGG | 0.358949 | 6_1:-59996241 | None:intergenic |
| TCCAACACCAAACATGGTTA+TGG | 0.395418 | 6_1:-59996008 | None:intergenic |
| TTTGCTTTAAACAACAGAAA+TGG | 0.418770 | 6_1:-59995934 | None:intergenic |
| TAAGATGGATAAACTATTTG+AGG | 0.452664 | 6_1:+59996218 | Msa0889850:CDS |
| ATGTATTGCAGGGTTGCAAA+TGG | 0.456300 | 6_1:+59996181 | Msa0889850:intron |
| AAAGCTTCTCATCTTCTTCA+GGG | 0.470762 | 6_1:-59995979 | None:intergenic |
| GAAAGAGTTGTAGATTAAGA+TGG | 0.491121 | 6_1:+59996203 | Msa0889850:CDS |
| AAGCTTCTCATCTTCTTCAG+GGG | 0.607980 | 6_1:-59995978 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATACTAAGAAAATGTTTA+TGG | + | chr6_1:59995954-59995973 | Msa0889850:CDS | 15.0% |
| !! | TTGTAAAGTAAAAAAAGATA+AGG | - | chr6_1:59996120-59996139 | None:intergenic | 15.0% |
| !!! | TCATTTTTTTATGTATTGCA+GGG | + | chr6_1:59996171-59996190 | Msa0889850:intron | 20.0% |
| !! | TTTGCTTTAAACAACAGAAA+TGG | - | chr6_1:59995937-59995956 | None:intergenic | 25.0% |
| !! | TTAATATTACCAGCTAGTTT+AGG | - | chr6_1:59996049-59996068 | None:intergenic | 25.0% |
| !!! | CTCATTTTTTTATGTATTGC+AGG | + | chr6_1:59996170-59996189 | Msa0889850:intron | 25.0% |
| ! | TAAGATGGATAAACTATTTG+AGG | + | chr6_1:59996218-59996237 | Msa0889850:CDS | 25.0% |
| TTCAATTCCATAACCATGTT+TGG | + | chr6_1:59996001-59996020 | Msa0889850:intron | 30.0% | |
| GAAAGAGTTGTAGATTAAGA+TGG | + | chr6_1:59996203-59996222 | Msa0889850:CDS | 30.0% | |
| AAAGCTTCTCATCTTCTTCA+GGG | - | chr6_1:59995982-59996001 | None:intergenic | 35.0% | |
| AAAAGCTTCTCATCTTCTTC+AGG | - | chr6_1:59995983-59996002 | None:intergenic | 35.0% | |
| GATCTTTCTCTCTTCAAATC+AGG | - | chr6_1:59996244-59996263 | None:intergenic | 35.0% | |
| AAGCTTCTCATCTTCTTCAG+GGG | - | chr6_1:59995981-59996000 | None:intergenic | 40.0% | |
| !! | TCCATAACCATGTTTGGTGT+TGG | + | chr6_1:59996007-59996026 | Msa0889850:intron | 40.0% |
| TCCAACACCAAACATGGTTA+TGG | - | chr6_1:59996011-59996030 | None:intergenic | 40.0% | |
| CCAATATCCAACACCAAACA+TGG | - | chr6_1:59996017-59996036 | None:intergenic | 40.0% | |
| !! | CCATGTTTGGTGTTGGATAT+TGG | + | chr6_1:59996014-59996033 | Msa0889850:intron | 40.0% |
| AGTTGAGTTCCTAAACTAGC+TGG | + | chr6_1:59996037-59996056 | Msa0889850:intron | 40.0% | |
| ATGTATTGCAGGGTTGCAAA+TGG | + | chr6_1:59996181-59996200 | Msa0889850:intron | 40.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 59995926 | 59996282 | 59995926 | ID=Msa0889850;Name=Msa0889850 |
| chr6_1 | mRNA | 59995926 | 59996282 | 59995926 | ID=Msa0889850-mRNA-1;Parent=Msa0889850;Name=Msa0889850-mRNA-1;_AED=0.32;_eAED=0.46;_QI=0|0|0|1|0|0|2|0|60 |
| chr6_1 | exon | 59995926 | 59996017 | 59995926 | ID=Msa0889850-mRNA-1:exon:11351;Parent=Msa0889850-mRNA-1 |
| chr6_1 | exon | 59996192 | 59996282 | 59996192 | ID=Msa0889850-mRNA-1:exon:11352;Parent=Msa0889850-mRNA-1 |
| chr6_1 | CDS | 59995926 | 59996017 | 59995926 | ID=Msa0889850-mRNA-1:cds;Parent=Msa0889850-mRNA-1 |
| chr6_1 | CDS | 59996192 | 59996282 | 59996192 | ID=Msa0889850-mRNA-1:cds;Parent=Msa0889850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
