Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993860 | KEH40194.1 | 94.040 | 151 | 9 | 0 | 1 | 151 | 1 | 151 | 4.74e-92 | 276 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993860 | sp|Q8GY84|RH10_ARATH | 54.667 | 150 | 66 | 1 | 1 | 148 | 258 | 407 | 3.97e-47 | 161 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993860 | A0A072VDU5 | 94.040 | 151 | 9 | 0 | 1 | 151 | 1 | 151 | 2.26e-92 | 276 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004100 | Msa0993860 | 0.835238 | 1.885268e-56 | -8.615850e-47 |
| Msa0993860 | Msa0993870 | 0.867366 | 1.443540e-65 | -8.615850e-47 |
| Msa0916350 | Msa0993860 | 0.862980 | 3.450935e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993860 | MtrunA17_Chr1g0155691 | 94.040 | 151 | 9 | 0 | 1 | 151 | 1 | 151 | 4.36e-96 | 276 |
| Msa0993860 | MtrunA17_Chr5g0429221 | 69.333 | 150 | 45 | 1 | 1 | 150 | 244 | 392 | 6.74e-69 | 214 |
| Msa0993860 | MtrunA17_Chr7g0236841 | 61.333 | 150 | 56 | 1 | 1 | 148 | 248 | 397 | 3.47e-49 | 163 |
| Msa0993860 | MtrunA17_Chr6g0483491 | 61.333 | 150 | 56 | 1 | 1 | 148 | 248 | 397 | 4.72e-49 | 163 |
| Msa0993860 | MtrunA17_Chr1g0155201 | 52.000 | 150 | 64 | 3 | 1 | 150 | 127 | 268 | 9.62e-36 | 126 |
| Msa0993860 | MtrunA17_Chr2g0310581 | 34.014 | 147 | 95 | 1 | 5 | 149 | 298 | 444 | 4.25e-21 | 88.6 |
| Msa0993860 | MtrunA17_Chr7g0247191 | 29.231 | 130 | 89 | 2 | 4 | 131 | 387 | 515 | 8.38e-16 | 73.6 |
| Msa0993860 | MtrunA17_Chr7g0271121 | 30.147 | 136 | 91 | 3 | 3 | 135 | 352 | 486 | 9.04e-16 | 73.6 |
| Msa0993860 | MtrunA17_Chr7g0247181 | 28.462 | 130 | 90 | 2 | 4 | 131 | 377 | 505 | 1.42e-15 | 72.8 |
| Msa0993860 | MtrunA17_Chr7g0247221 | 28.462 | 130 | 90 | 2 | 4 | 131 | 380 | 508 | 1.74e-15 | 72.4 |
| Msa0993860 | MtrunA17_Chr2g0299681 | 31.683 | 101 | 67 | 1 | 37 | 135 | 313 | 413 | 7.52e-14 | 67.8 |
| Msa0993860 | MtrunA17_Chr5g0409981 | 32.168 | 143 | 70 | 5 | 16 | 134 | 365 | 504 | 1.11e-13 | 67.4 |
| Msa0993860 | MtrunA17_Chr3g0137901 | 34.314 | 102 | 65 | 1 | 7 | 106 | 45 | 146 | 1.45e-13 | 64.7 |
| Msa0993860 | MtrunA17_Chr1g0193491 | 25.926 | 135 | 96 | 3 | 3 | 134 | 361 | 494 | 5.62e-13 | 65.5 |
| Msa0993860 | MtrunA17_Chr2g0307471 | 28.462 | 130 | 87 | 2 | 7 | 133 | 341 | 467 | 6.38e-13 | 65.1 |
| Msa0993860 | MtrunA17_Chr1g0149251 | 34.314 | 102 | 65 | 1 | 7 | 106 | 209 | 310 | 7.80e-13 | 64.7 |
| Msa0993860 | MtrunA17_Chr4g0003441 | 34.314 | 102 | 65 | 1 | 7 | 106 | 353 | 454 | 1.00e-12 | 64.7 |
| Msa0993860 | MtrunA17_Chr5g0442191 | 32.979 | 94 | 61 | 1 | 37 | 128 | 358 | 451 | 1.41e-12 | 64.3 |
| Msa0993860 | MtrunA17_Chr3g0114081 | 30.172 | 116 | 75 | 2 | 7 | 116 | 280 | 395 | 1.45e-12 | 64.3 |
| Msa0993860 | MtrunA17_Chr3g0098121 | 31.481 | 108 | 72 | 1 | 19 | 124 | 412 | 519 | 2.13e-12 | 63.5 |
| Msa0993860 | MtrunA17_Chr2g0329931 | 33.333 | 84 | 54 | 1 | 37 | 118 | 313 | 396 | 4.41e-12 | 62.8 |
| Msa0993860 | MtrunA17_Chr8g0342861 | 28.713 | 101 | 70 | 1 | 37 | 135 | 313 | 413 | 5.61e-12 | 62.4 |
| Msa0993860 | MtrunA17_Chr4g0062301 | 26.923 | 130 | 89 | 2 | 7 | 133 | 348 | 474 | 2.56e-11 | 60.5 |
| Msa0993860 | MtrunA17_Chr2g0300291 | 30.556 | 108 | 73 | 1 | 19 | 124 | 402 | 509 | 3.49e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993860 | AT5G60990.1 | 54.667 | 150 | 66 | 1 | 1 | 148 | 258 | 407 | 4.03e-48 | 161 |
| Msa0993860 | AT1G16280.1 | 38.400 | 125 | 75 | 1 | 5 | 127 | 304 | 428 | 1.63e-24 | 98.6 |
| Msa0993860 | AT3G61240.2 | 26.515 | 132 | 95 | 1 | 6 | 135 | 364 | 495 | 2.45e-15 | 72.4 |
| Msa0993860 | AT3G61240.1 | 26.515 | 132 | 95 | 1 | 6 | 135 | 364 | 495 | 2.45e-15 | 72.4 |
| Msa0993860 | AT1G31970.1 | 36.264 | 91 | 56 | 1 | 19 | 107 | 382 | 472 | 2.47e-15 | 72.4 |
| Msa0993860 | AT4G00660.1 | 26.119 | 134 | 97 | 1 | 4 | 135 | 369 | 502 | 2.78e-15 | 72.4 |
| Msa0993860 | AT4G00660.2 | 26.119 | 134 | 97 | 1 | 4 | 135 | 369 | 502 | 2.78e-15 | 72.4 |
| Msa0993860 | AT2G45810.1 | 27.778 | 126 | 89 | 1 | 6 | 129 | 394 | 519 | 8.22e-15 | 70.9 |
| Msa0993860 | AT5G65900.1 | 28.889 | 135 | 90 | 2 | 7 | 138 | 404 | 535 | 6.03e-14 | 68.6 |
| Msa0993860 | AT3G22330.1 | 27.907 | 129 | 90 | 2 | 3 | 129 | 349 | 476 | 7.07e-14 | 68.2 |
| Msa0993860 | AT3G22310.2 | 29.457 | 129 | 88 | 2 | 3 | 129 | 361 | 488 | 1.56e-13 | 67.4 |
| Msa0993860 | AT3G22310.1 | 29.457 | 129 | 88 | 2 | 3 | 129 | 361 | 488 | 1.57e-13 | 67.4 |
| Msa0993860 | AT5G26742.1 | 29.752 | 121 | 82 | 2 | 3 | 121 | 351 | 470 | 1.77e-13 | 67.4 |
| Msa0993860 | AT5G26742.2 | 29.752 | 121 | 82 | 2 | 3 | 121 | 351 | 470 | 1.77e-13 | 67.4 |
| Msa0993860 | AT5G26742.3 | 29.752 | 121 | 82 | 2 | 3 | 121 | 258 | 377 | 2.55e-13 | 66.6 |
| Msa0993860 | AT1G51380.1 | 35.789 | 95 | 59 | 1 | 39 | 131 | 297 | 391 | 2.57e-13 | 66.6 |
| Msa0993860 | AT4G16630.1 | 31.092 | 119 | 80 | 1 | 19 | 135 | 428 | 546 | 2.62e-13 | 66.6 |
| Msa0993860 | AT4G15850.1 | 28.358 | 134 | 90 | 3 | 3 | 130 | 335 | 468 | 5.58e-13 | 65.9 |
| Msa0993860 | AT3G13920.4 | 33.333 | 84 | 54 | 1 | 37 | 118 | 307 | 390 | 2.53e-12 | 63.5 |
| Msa0993860 | AT3G13920.1 | 33.333 | 84 | 54 | 1 | 37 | 118 | 312 | 395 | 3.06e-12 | 63.5 |
| Msa0993860 | AT3G13920.3 | 33.333 | 84 | 54 | 1 | 37 | 118 | 302 | 385 | 3.12e-12 | 63.5 |
| Msa0993860 | AT1G54270.2 | 33.333 | 84 | 54 | 1 | 37 | 118 | 307 | 390 | 3.23e-12 | 63.5 |
| Msa0993860 | AT1G54270.1 | 33.333 | 84 | 54 | 1 | 37 | 118 | 312 | 395 | 3.44e-12 | 63.2 |
| Msa0993860 | AT5G11170.1 | 33.333 | 102 | 66 | 1 | 7 | 106 | 292 | 393 | 3.80e-12 | 63.2 |
| Msa0993860 | AT5G11200.1 | 33.333 | 102 | 66 | 1 | 7 | 106 | 292 | 393 | 3.80e-12 | 63.2 |
| Msa0993860 | AT5G11170.2 | 33.333 | 102 | 66 | 1 | 7 | 106 | 209 | 310 | 4.07e-12 | 63.2 |
| Msa0993860 | AT5G11200.3 | 33.333 | 102 | 66 | 1 | 7 | 106 | 333 | 434 | 5.17e-12 | 62.8 |
| Msa0993860 | AT5G11200.2 | 33.333 | 102 | 66 | 1 | 7 | 106 | 351 | 452 | 5.59e-12 | 62.8 |
| Msa0993860 | AT1G77030.1 | 31.193 | 109 | 69 | 3 | 32 | 136 | 298 | 404 | 9.38e-12 | 62.4 |
Find 40 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTAAGAATCTTGGTTTC+AGG | 0.181986 | 6_4:+67233248 | Msa0993860:CDS |
| TGACTCATATAACTAATAAT+AGG | 0.255686 | 6_4:-67233277 | None:intergenic |
| TCCTTGAATGCGTTCAAGTC+TGG | 0.307276 | 6_4:+67233410 | Msa0993860:CDS |
| GCTTTGATTCTTAAGAATCT+TGG | 0.333972 | 6_4:+67233241 | Msa0993860:CDS |
| TTGAAATGTCTCCTTTCATC+TGG | 0.335756 | 6_4:-67233670 | None:intergenic |
| ATGTGGTACAACGCTTCTTT+TGG | 0.360475 | 6_4:+67233219 | Msa0993860:CDS |
| TTGTAGTGACTTTGTTAGTA+AGG | 0.398889 | 6_4:+67233451 | Msa0993860:CDS |
| CCCAGACTTGAACGCATTCA+AGG | 0.403087 | 6_4:-67233411 | None:intergenic |
| ATAAAATTCTAATTGTCAAT+GGG | 0.407296 | 6_4:-67234273 | None:intergenic |
| TTTGGAAGGGTGTGCTATTG+AGG | 0.416430 | 6_4:+67233851 | Msa0993860:CDS |
| GACTCATATAACTAATAATA+GGG | 0.421629 | 6_4:-67233276 | None:intergenic |
| ATCTGGGCTCACAAAGGAAA+TGG | 0.429905 | 6_4:-67233653 | None:intergenic |
| TCTTAAGAATCTTGGTTTCA+GGG | 0.434508 | 6_4:+67233249 | Msa0993860:CDS |
| TATTATTAGTTATATGAGTC+AGG | 0.445349 | 6_4:+67233279 | Msa0993860:CDS |
| GGATATTCCAGCGGTAGATA+TGG | 0.446077 | 6_4:+67233478 | Msa0993860:CDS |
| AAAAGCAAAACTTCCTCAAA+TGG | 0.452304 | 6_4:-67233831 | None:intergenic |
| CCTTGAATGCGTTCAAGTCT+GGG | 0.463606 | 6_4:+67233411 | Msa0993860:CDS |
| AATATGATAGAGAAACATAT+AGG | 0.463712 | 6_4:+67233691 | Msa0993860:CDS |
| TGATTAACTACAACATTCCT+TGG | 0.469598 | 6_4:+67233501 | Msa0993860:CDS |
| ATTGTATCCTGCACCATTTG+AGG | 0.486127 | 6_4:+67233818 | Msa0993860:CDS |
| TGACTTTGTTAGTAAGGGAC+TGG | 0.495125 | 6_4:+67233457 | Msa0993860:CDS |
| CCTTTGTGAGCCCAGATGAA+AGG | 0.506008 | 6_4:+67233659 | Msa0993860:CDS |
| TACACTCTCACTAAAATGAC+TGG | 0.518270 | 6_4:+67233169 | None:intergenic |
| TGTAGTGACTTTGTTAGTAA+GGG | 0.522265 | 6_4:+67233452 | Msa0993860:CDS |
| AAAACTTCCTCAAATGGTGC+AGG | 0.550172 | 6_4:-67233825 | None:intergenic |
| TGAAATGTCTCCTTTCATCT+GGG | 0.550468 | 6_4:-67233669 | None:intergenic |
| AATGACTGGAAGTACATCAA+TGG | 0.550477 | 6_4:+67233183 | None:intergenic |
| ATTACATCTACCGCGTGGGA+TGG | 0.552861 | 6_4:+67233608 | Msa0993860:CDS |
| TTAATCACCATATCTACCGC+TGG | 0.579180 | 6_4:-67233485 | None:intergenic |
| TCAAATGGTGCAGGATACAA+TGG | 0.597106 | 6_4:-67233816 | None:intergenic |
| CATATAACTAATAATAGGGA+TGG | 0.602559 | 6_4:-67233272 | None:intergenic |
| CATCTTACGTTTGGATACCA+AGG | 0.615406 | 6_4:-67233518 | None:intergenic |
| GGCTGAAAGATTATCACAAG+AGG | 0.628418 | 6_4:+67233872 | Msa0993860:CDS |
| CCTTTCATCTGGGCTCACAA+AGG | 0.638109 | 6_4:-67233659 | None:intergenic |
| CTTGAATGCGTTCAAGTCTG+GGG | 0.643789 | 6_4:+67233412 | Msa0993860:CDS |
| CAGGATTACATCTACCGCGT+GGG | 0.645040 | 6_4:+67233604 | Msa0993860:intron |
| TAAGGGACTGGATATTCCAG+CGG | 0.698306 | 6_4:+67233469 | Msa0993860:CDS |
| ACAGGATTACATCTACCGCG+TGG | 0.703821 | 6_4:+67233603 | Msa0993860:intron |
| ATGGTATACACTCAGCAATG+TGG | 0.716399 | 6_4:+67233202 | Msa0993860:CDS |
| GAGCAACATTCCATCCCACG+CGG | 0.794839 | 6_4:-67233618 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAACATAATAACTTTTTAT+AGG | + | chr6_4:67233373-67233392 | Msa0993860:intron | 10.0% |
| !!! | TATAAAATACTAATTTCTTT+TGG | - | chr6_4:67234169-67234188 | None:intergenic | 10.0% |
| !!! | TTAACATAATAACTTTTTAT+AGG | + | chr6_4:67233373-67233392 | Msa0993860:intron | 10.0% |
| !!! | TATAAAATACTAATTTCTTT+TGG | - | chr6_4:67234169-67234188 | None:intergenic | 10.0% |
| !! | AGAAATTACAATTATAATAC+AGG | - | chr6_4:67233321-67233340 | None:intergenic | 15.0% |
| !! | AAGTTATTATGTTAAGAATT+AGG | - | chr6_4:67233368-67233387 | None:intergenic | 15.0% |
| !!! | AATATGACAGTTTTTTTTTT+AGG | + | chr6_4:67234244-67234263 | Msa0993860:intron | 15.0% |
| !!! | ATATGACAGTTTTTTTTTTA+GGG | + | chr6_4:67234245-67234264 | Msa0993860:intron | 15.0% |
| !! | AGAAATTACAATTATAATAC+AGG | - | chr6_4:67233321-67233340 | None:intergenic | 15.0% |
| !! | AAGTTATTATGTTAAGAATT+AGG | - | chr6_4:67233368-67233387 | None:intergenic | 15.0% |
| !!! | AATATGACAGTTTTTTTTTT+AGG | + | chr6_4:67234244-67234263 | Msa0993860:intron | 15.0% |
| !!! | ATATGACAGTTTTTTTTTTA+GGG | + | chr6_4:67234245-67234264 | Msa0993860:intron | 15.0% |
| !! | GACTCATATAACTAATAATA+GGG | - | chr6_4:67233279-67233298 | None:intergenic | 20.0% |
| !! | TGACTCATATAACTAATAAT+AGG | - | chr6_4:67233280-67233299 | None:intergenic | 20.0% |
| !! | TATTATTAGTTATATGAGTC+AGG | + | chr6_4:67233279-67233298 | Msa0993860:CDS | 20.0% |
| !! | AATATGATAGAGAAACATAT+AGG | + | chr6_4:67233691-67233710 | Msa0993860:CDS | 20.0% |
| !!! | AAATAGAGAAGTTAAGTTTT+TGG | + | chr6_4:67233959-67233978 | Msa0993860:intron | 20.0% |
| !! | TCCTTTCTATATCTAATTAT+CGG | - | chr6_4:67234044-67234063 | None:intergenic | 20.0% |
| !! | GACTCATATAACTAATAATA+GGG | - | chr6_4:67233279-67233298 | None:intergenic | 20.0% |
| !! | TGACTCATATAACTAATAAT+AGG | - | chr6_4:67233280-67233299 | None:intergenic | 20.0% |
| !! | TATTATTAGTTATATGAGTC+AGG | + | chr6_4:67233279-67233298 | Msa0993860:CDS | 20.0% |
| !! | AATATGATAGAGAAACATAT+AGG | + | chr6_4:67233691-67233710 | Msa0993860:CDS | 20.0% |
| !!! | AAATAGAGAAGTTAAGTTTT+TGG | + | chr6_4:67233959-67233978 | Msa0993860:intron | 20.0% |
| !! | TCCTTTCTATATCTAATTAT+CGG | - | chr6_4:67234044-67234063 | None:intergenic | 20.0% |
| ! | CATATAACTAATAATAGGGA+TGG | - | chr6_4:67233275-67233294 | None:intergenic | 25.0% |
| !! | TTTTTATAGGCAAAGAAACT+TGG | + | chr6_4:67233386-67233405 | Msa0993860:intron | 25.0% |
| ! | TCATTAAAATGGCAAAGTAA+AGG | - | chr6_4:67233726-67233745 | None:intergenic | 25.0% |
| !! | AAAGCGTCATAGTAAATAAT+TGG | + | chr6_4:67233749-67233768 | Msa0993860:intron | 25.0% |
| ! | TCTATTTAAAAGAAGTAGAC+AGG | - | chr6_4:67233946-67233965 | None:intergenic | 25.0% |
| !!! | AGTTAAGTTTTTGGATTTTG+TGG | + | chr6_4:67233968-67233987 | Msa0993860:intron | 25.0% |
| ! | TTATACCAATGAAGACAAAT+TGG | - | chr6_4:67234012-67234031 | None:intergenic | 25.0% |
| ! | TCCGATAATTAGATATAGAA+AGG | + | chr6_4:67234040-67234059 | Msa0993860:intron | 25.0% |
| ! | CATATAACTAATAATAGGGA+TGG | - | chr6_4:67233275-67233294 | None:intergenic | 25.0% |
| !! | TTTTTATAGGCAAAGAAACT+TGG | + | chr6_4:67233386-67233405 | Msa0993860:intron | 25.0% |
| ! | TCATTAAAATGGCAAAGTAA+AGG | - | chr6_4:67233726-67233745 | None:intergenic | 25.0% |
| !! | AAAGCGTCATAGTAAATAAT+TGG | + | chr6_4:67233749-67233768 | Msa0993860:intron | 25.0% |
| ! | TCTATTTAAAAGAAGTAGAC+AGG | - | chr6_4:67233946-67233965 | None:intergenic | 25.0% |
| !!! | AGTTAAGTTTTTGGATTTTG+TGG | + | chr6_4:67233968-67233987 | Msa0993860:intron | 25.0% |
| ! | TTATACCAATGAAGACAAAT+TGG | - | chr6_4:67234012-67234031 | None:intergenic | 25.0% |
| ! | TCCGATAATTAGATATAGAA+AGG | + | chr6_4:67234040-67234059 | Msa0993860:intron | 25.0% |
| GCTTTGATTCTTAAGAATCT+TGG | + | chr6_4:67233241-67233260 | Msa0993860:CDS | 30.0% | |
| TTCTTAAGAATCTTGGTTTC+AGG | + | chr6_4:67233248-67233267 | Msa0993860:CDS | 30.0% | |
| TCTTAAGAATCTTGGTTTCA+GGG | + | chr6_4:67233249-67233268 | Msa0993860:CDS | 30.0% | |
| GAATTAGGCATATTTCTTGT+TGG | - | chr6_4:67233353-67233372 | None:intergenic | 30.0% | |
| TTGTAGTGACTTTGTTAGTA+AGG | + | chr6_4:67233451-67233470 | Msa0993860:CDS | 30.0% | |
| TGTAGTGACTTTGTTAGTAA+GGG | + | chr6_4:67233452-67233471 | Msa0993860:CDS | 30.0% | |
| TGATTAACTACAACATTCCT+TGG | + | chr6_4:67233501-67233520 | Msa0993860:CDS | 30.0% | |
| TATATAGCACATCTTACGTT+TGG | - | chr6_4:67233530-67233549 | None:intergenic | 30.0% | |
| GATAGAGAAACATATAGGTT+AGG | + | chr6_4:67233696-67233715 | Msa0993860:intron | 30.0% | |
| ! | GACGCTTTTGTTCATTAAAA+TGG | - | chr6_4:67233737-67233756 | None:intergenic | 30.0% |
| AAAAGCAAAACTTCCTCAAA+TGG | - | chr6_4:67233834-67233853 | None:intergenic | 30.0% | |
| ! | ATTTGAGGAAGTTTTGCTTT+TGG | + | chr6_4:67233833-67233852 | Msa0993860:CDS | 30.0% |
| ATTGAGCATAGTTATGCTTT+AGG | + | chr6_4:67233906-67233925 | Msa0993860:intron | 30.0% | |
| !! | TTTTGGAAATTCACTTGAGA+GGG | - | chr6_4:67234152-67234171 | None:intergenic | 30.0% |
| GCTTTGATTCTTAAGAATCT+TGG | + | chr6_4:67233241-67233260 | Msa0993860:CDS | 30.0% | |
| TTCTTAAGAATCTTGGTTTC+AGG | + | chr6_4:67233248-67233267 | Msa0993860:CDS | 30.0% | |
| TCTTAAGAATCTTGGTTTCA+GGG | + | chr6_4:67233249-67233268 | Msa0993860:CDS | 30.0% | |
| GAATTAGGCATATTTCTTGT+TGG | - | chr6_4:67233353-67233372 | None:intergenic | 30.0% | |
| TTGTAGTGACTTTGTTAGTA+AGG | + | chr6_4:67233451-67233470 | Msa0993860:CDS | 30.0% | |
| TGTAGTGACTTTGTTAGTAA+GGG | + | chr6_4:67233452-67233471 | Msa0993860:CDS | 30.0% | |
| TGATTAACTACAACATTCCT+TGG | + | chr6_4:67233501-67233520 | Msa0993860:CDS | 30.0% | |
| TATATAGCACATCTTACGTT+TGG | - | chr6_4:67233530-67233549 | None:intergenic | 30.0% | |
| GATAGAGAAACATATAGGTT+AGG | + | chr6_4:67233696-67233715 | Msa0993860:intron | 30.0% | |
| ! | GACGCTTTTGTTCATTAAAA+TGG | - | chr6_4:67233737-67233756 | None:intergenic | 30.0% |
| AAAAGCAAAACTTCCTCAAA+TGG | - | chr6_4:67233834-67233853 | None:intergenic | 30.0% | |
| ! | ATTTGAGGAAGTTTTGCTTT+TGG | + | chr6_4:67233833-67233852 | Msa0993860:CDS | 30.0% |
| ATTGAGCATAGTTATGCTTT+AGG | + | chr6_4:67233906-67233925 | Msa0993860:intron | 30.0% | |
| !! | TTTTGGAAATTCACTTGAGA+GGG | - | chr6_4:67234152-67234171 | None:intergenic | 30.0% |
| ATGTAATCCTGTTGATCACA+CGG | - | chr6_4:67233595-67233614 | None:intergenic | 35.0% | |
| TGAAATGTCTCCTTTCATCT+GGG | - | chr6_4:67233672-67233691 | None:intergenic | 35.0% | |
| TTGAAATGTCTCCTTTCATC+TGG | - | chr6_4:67233673-67233692 | None:intergenic | 35.0% | |
| !! | AGGAAGTTTTGCTTTTGGAA+GGG | + | chr6_4:67233838-67233857 | Msa0993860:CDS | 35.0% |
| ! | TTTGTGGCAAGTTGAAATTG+TGG | + | chr6_4:67233984-67234003 | Msa0993860:intron | 35.0% |
| GAATGTATGATAAGACTGCA+CGG | + | chr6_4:67234062-67234081 | Msa0993860:intron | 35.0% | |
| AATGTATGATAAGACTGCAC+GGG | + | chr6_4:67234063-67234082 | Msa0993860:intron | 35.0% | |
| ATTCACTTGAGAGGGATATT+AGG | - | chr6_4:67234144-67234163 | None:intergenic | 35.0% | |
| !! | CTTTTGGAAATTCACTTGAG+AGG | - | chr6_4:67234153-67234172 | None:intergenic | 35.0% |
| ATGTAATCCTGTTGATCACA+CGG | - | chr6_4:67233595-67233614 | None:intergenic | 35.0% | |
| TGAAATGTCTCCTTTCATCT+GGG | - | chr6_4:67233672-67233691 | None:intergenic | 35.0% | |
| TTGAAATGTCTCCTTTCATC+TGG | - | chr6_4:67233673-67233692 | None:intergenic | 35.0% | |
| !! | AGGAAGTTTTGCTTTTGGAA+GGG | + | chr6_4:67233838-67233857 | Msa0993860:CDS | 35.0% |
| ! | TTTGTGGCAAGTTGAAATTG+TGG | + | chr6_4:67233984-67234003 | Msa0993860:intron | 35.0% |
| GAATGTATGATAAGACTGCA+CGG | + | chr6_4:67234062-67234081 | Msa0993860:intron | 35.0% | |
| AATGTATGATAAGACTGCAC+GGG | + | chr6_4:67234063-67234082 | Msa0993860:intron | 35.0% | |
| ATTCACTTGAGAGGGATATT+AGG | - | chr6_4:67234144-67234163 | None:intergenic | 35.0% | |
| !! | CTTTTGGAAATTCACTTGAG+AGG | - | chr6_4:67234153-67234172 | None:intergenic | 35.0% |
| ATGGTATACACTCAGCAATG+TGG | + | chr6_4:67233202-67233221 | Msa0993860:CDS | 40.0% | |
| ! | ATGTGGTACAACGCTTCTTT+TGG | + | chr6_4:67233219-67233238 | Msa0993860:CDS | 40.0% |
| TGACTTTGTTAGTAAGGGAC+TGG | + | chr6_4:67233457-67233476 | Msa0993860:CDS | 40.0% | |
| TTAATCACCATATCTACCGC+TGG | - | chr6_4:67233488-67233507 | None:intergenic | 40.0% | |
| CATCTTACGTTTGGATACCA+AGG | - | chr6_4:67233521-67233540 | None:intergenic | 40.0% | |
| TCAAATGGTGCAGGATACAA+TGG | - | chr6_4:67233819-67233838 | None:intergenic | 40.0% | |
| ATTGTATCCTGCACCATTTG+AGG | + | chr6_4:67233818-67233837 | Msa0993860:CDS | 40.0% | |
| AAAACTTCCTCAAATGGTGC+AGG | - | chr6_4:67233828-67233847 | None:intergenic | 40.0% | |
| !! | GAGGAAGTTTTGCTTTTGGA+AGG | + | chr6_4:67233837-67233856 | Msa0993860:CDS | 40.0% |
| GGCTGAAAGATTATCACAAG+AGG | + | chr6_4:67233872-67233891 | Msa0993860:CDS | 40.0% | |
| ! | TGGTGCCAATTTGTCTTCAT+TGG | + | chr6_4:67234004-67234023 | Msa0993860:intron | 40.0% |
| ATGGTATACACTCAGCAATG+TGG | + | chr6_4:67233202-67233221 | Msa0993860:CDS | 40.0% | |
| ! | ATGTGGTACAACGCTTCTTT+TGG | + | chr6_4:67233219-67233238 | Msa0993860:CDS | 40.0% |
| TGACTTTGTTAGTAAGGGAC+TGG | + | chr6_4:67233457-67233476 | Msa0993860:CDS | 40.0% | |
| TTAATCACCATATCTACCGC+TGG | - | chr6_4:67233488-67233507 | None:intergenic | 40.0% | |
| CATCTTACGTTTGGATACCA+AGG | - | chr6_4:67233521-67233540 | None:intergenic | 40.0% | |
| TCAAATGGTGCAGGATACAA+TGG | - | chr6_4:67233819-67233838 | None:intergenic | 40.0% | |
| ATTGTATCCTGCACCATTTG+AGG | + | chr6_4:67233818-67233837 | Msa0993860:CDS | 40.0% | |
| AAAACTTCCTCAAATGGTGC+AGG | - | chr6_4:67233828-67233847 | None:intergenic | 40.0% | |
| !! | GAGGAAGTTTTGCTTTTGGA+AGG | + | chr6_4:67233837-67233856 | Msa0993860:CDS | 40.0% |
| GGCTGAAAGATTATCACAAG+AGG | + | chr6_4:67233872-67233891 | Msa0993860:CDS | 40.0% | |
| ! | TGGTGCCAATTTGTCTTCAT+TGG | + | chr6_4:67234004-67234023 | Msa0993860:intron | 40.0% |
| GAGTCAGGTAACTGTACTAC+AGG | + | chr6_4:67233294-67233313 | Msa0993860:intron | 45.0% | |
| TCCTTGAATGCGTTCAAGTC+TGG | + | chr6_4:67233410-67233429 | Msa0993860:CDS | 45.0% | |
| CCTTGAATGCGTTCAAGTCT+GGG | + | chr6_4:67233411-67233430 | Msa0993860:CDS | 45.0% | |
| CTTGAATGCGTTCAAGTCTG+GGG | + | chr6_4:67233412-67233431 | Msa0993860:CDS | 45.0% | |
| TAAGGGACTGGATATTCCAG+CGG | + | chr6_4:67233469-67233488 | Msa0993860:CDS | 45.0% | |
| GGATATTCCAGCGGTAGATA+TGG | + | chr6_4:67233478-67233497 | Msa0993860:CDS | 45.0% | |
| ATCTGGGCTCACAAAGGAAA+TGG | - | chr6_4:67233656-67233675 | None:intergenic | 45.0% | |
| ! | TTTGGAAGGGTGTGCTATTG+AGG | + | chr6_4:67233851-67233870 | Msa0993860:CDS | 45.0% |
| GAGTCAGGTAACTGTACTAC+AGG | + | chr6_4:67233294-67233313 | Msa0993860:intron | 45.0% | |
| TCCTTGAATGCGTTCAAGTC+TGG | + | chr6_4:67233410-67233429 | Msa0993860:CDS | 45.0% | |
| CCTTGAATGCGTTCAAGTCT+GGG | + | chr6_4:67233411-67233430 | Msa0993860:CDS | 45.0% | |
| CTTGAATGCGTTCAAGTCTG+GGG | + | chr6_4:67233412-67233431 | Msa0993860:CDS | 45.0% | |
| TAAGGGACTGGATATTCCAG+CGG | + | chr6_4:67233469-67233488 | Msa0993860:CDS | 45.0% | |
| GGATATTCCAGCGGTAGATA+TGG | + | chr6_4:67233478-67233497 | Msa0993860:CDS | 45.0% | |
| ATCTGGGCTCACAAAGGAAA+TGG | - | chr6_4:67233656-67233675 | None:intergenic | 45.0% | |
| ! | TTTGGAAGGGTGTGCTATTG+AGG | + | chr6_4:67233851-67233870 | Msa0993860:CDS | 45.0% |
| !!! | ATTTATTTATTTATTTTTTC+AGG | + | chr6_4:67233783-67233802 | Msa0993860:intron | 5.0% |
| !!! | ATTTATTTATTTATTTTTTC+AGG | + | chr6_4:67233783-67233802 | Msa0993860:intron | 5.0% |
| CCCAGACTTGAACGCATTCA+AGG | - | chr6_4:67233414-67233433 | None:intergenic | 50.0% | |
| CTCATGACCGTGTGATCAAC+AGG | + | chr6_4:67233585-67233604 | Msa0993860:intron | 50.0% | |
| ACAGGATTACATCTACCGCG+TGG | + | chr6_4:67233603-67233622 | Msa0993860:intron | 50.0% | |
| CAGGATTACATCTACCGCGT+GGG | + | chr6_4:67233604-67233623 | Msa0993860:intron | 50.0% | |
| ATTACATCTACCGCGTGGGA+TGG | + | chr6_4:67233608-67233627 | Msa0993860:CDS | 50.0% | |
| CCTTTCATCTGGGCTCACAA+AGG | - | chr6_4:67233662-67233681 | None:intergenic | 50.0% | |
| CCTTTGTGAGCCCAGATGAA+AGG | + | chr6_4:67233659-67233678 | Msa0993860:CDS | 50.0% | |
| CCCAGACTTGAACGCATTCA+AGG | - | chr6_4:67233414-67233433 | None:intergenic | 50.0% | |
| CTCATGACCGTGTGATCAAC+AGG | + | chr6_4:67233585-67233604 | Msa0993860:intron | 50.0% | |
| ACAGGATTACATCTACCGCG+TGG | + | chr6_4:67233603-67233622 | Msa0993860:intron | 50.0% | |
| CAGGATTACATCTACCGCGT+GGG | + | chr6_4:67233604-67233623 | Msa0993860:intron | 50.0% | |
| ATTACATCTACCGCGTGGGA+TGG | + | chr6_4:67233608-67233627 | Msa0993860:CDS | 50.0% | |
| CCTTTCATCTGGGCTCACAA+AGG | - | chr6_4:67233662-67233681 | None:intergenic | 50.0% | |
| CCTTTGTGAGCCCAGATGAA+AGG | + | chr6_4:67233659-67233678 | Msa0993860:CDS | 50.0% | |
| GAGCAACATTCCATCCCACG+CGG | - | chr6_4:67233621-67233640 | None:intergenic | 55.0% | |
| GAGCAACATTCCATCCCACG+CGG | - | chr6_4:67233621-67233640 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 67233184 | 67234280 | 67233184 | ID=Msa0993860;Name=Msa0993860 |
| chr6_4 | mRNA | 67233184 | 67234280 | 67233184 | ID=Msa0993860-mRNA-1;Parent=Msa0993860;Name=Msa0993860-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|0.8|0.75|0.8|5|0|154 |
| chr6_4 | exon | 67233184 | 67233300 | 67233184 | ID=Msa0993860-mRNA-1:exon:12495;Parent=Msa0993860-mRNA-1 |
| chr6_4 | exon | 67233395 | 67233532 | 67233395 | ID=Msa0993860-mRNA-1:exon:12496;Parent=Msa0993860-mRNA-1 |
| chr6_4 | exon | 67233607 | 67233712 | 67233607 | ID=Msa0993860-mRNA-1:exon:12497;Parent=Msa0993860-mRNA-1 |
| chr6_4 | exon | 67233805 | 67233893 | 67233805 | ID=Msa0993860-mRNA-1:exon:12498;Parent=Msa0993860-mRNA-1 |
| chr6_4 | exon | 67234266 | 67234280 | 67234266 | ID=Msa0993860-mRNA-1:exon:12499;Parent=Msa0993860-mRNA-1 |
| chr6_4 | CDS | 67233184 | 67233300 | 67233184 | ID=Msa0993860-mRNA-1:cds;Parent=Msa0993860-mRNA-1 |
| chr6_4 | CDS | 67233395 | 67233532 | 67233395 | ID=Msa0993860-mRNA-1:cds;Parent=Msa0993860-mRNA-1 |
| chr6_4 | CDS | 67233607 | 67233712 | 67233607 | ID=Msa0993860-mRNA-1:cds;Parent=Msa0993860-mRNA-1 |
| chr6_4 | CDS | 67233805 | 67233893 | 67233805 | ID=Msa0993860-mRNA-1:cds;Parent=Msa0993860-mRNA-1 |
| chr6_4 | CDS | 67234266 | 67234280 | 67234266 | ID=Msa0993860-mRNA-1:cds;Parent=Msa0993860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
