AlfalfaGEDB | Msa0993870

M. sativa cultivar zhongmu-4 / Msa0993870

KEGG: K14777
GO: GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360
PFAM: PF00271.34

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0993870	KEH40194.1	94.000	150	9	0	1	150	1	150	9.22e-91	274

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0993870	sp\|Q8GY84\|RH10_ARATH	54.667	150	66	1	1	148	258	407	1.59e-46	161

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0993870	A0A072VDU5	94.000	150	9	0	1	150	1	150	4.40e-91	274

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0993870	TF	GARP-G2-like

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004100	Msa0993870	0.845585	3.705623e-59	-8.615850e-47
Msa0916350	Msa0993870	0.916459	1.736766e-85	-8.615850e-47
Msa0993860	Msa0993870	0.867366	1.443540e-65	-8.615850e-47

Showing 1 to 3 of 3 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0993870	MtrunA17_Chr1g0155691	94.000	150	9	0	1	150	1	150	8.48e-95	274
Msa0993870	MtrunA17_Chr5g0429221	69.333	150	45	1	1	150	244	392	2.16e-68	214
Msa0993870	MtrunA17_Chr7g0236841	61.333	150	56	1	1	148	248	397	1.37e-48	164
Msa0993870	MtrunA17_Chr6g0483491	61.333	150	56	1	1	148	248	397	1.49e-48	163
Msa0993870	MtrunA17_Chr1g0155201	52.000	150	64	3	1	150	127	268	4.39e-35	126
Msa0993870	MtrunA17_Chr4g0054981	79.688	64	13	0	134	197	296	359	5.19e-27	107
Msa0993870	MtrunA17_Chr5g0400241	77.586	58	13	0	140	197	303	360	1.07e-22	94.7
Msa0993870	MtrunA17_Chr2g0310581	36.296	135	84	1	5	137	298	432	2.47e-21	90.9
Msa0993870	MtrunA17_Chr4g0040481	70.833	48	14	0	150	197	160	207	1.72e-18	82.4
Msa0993870	MtrunA17_Chr2g0324891	70.833	48	14	0	150	197	163	210	4.90e-18	81.3

Showing 1 to 10 of 38 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0993870	AT5G60990.1	54.667	150	66	1	1	148	258	407	1.62e-47	161
Msa0993870	AT1G16280.1	38.400	125	75	1	5	127	304	428	7.66e-24	98.2
Msa0993870	AT4G18020.8	81.633	49	9	0	149	197	297	345	4.77e-20	87.4
Msa0993870	AT4G18020.11	81.633	49	9	0	149	197	297	345	4.77e-20	87.4
Msa0993870	AT4G18020.4	81.633	49	9	0	149	197	297	345	4.77e-20	87.4
Msa0993870	AT4G18020.5	81.633	49	9	0	149	197	297	345	4.77e-20	87.4
Msa0993870	AT4G18020.10	81.633	49	9	0	149	197	297	345	4.77e-20	87.4
Msa0993870	AT4G18020.7	81.633	49	9	0	149	197	297	345	4.77e-20	87.4
Msa0993870	AT4G18020.3	81.633	49	9	0	149	197	297	345	4.94e-20	87.4
Msa0993870	AT4G18020.2	81.633	49	9	0	149	197	297	345	4.94e-20	87.4

Showing 1 to 10 of 57 entries

Previous1 2 3 4 5 6Next

Find 50 sgRNAs with CRISPR-Local

Find 895 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTCCTCAAATGGTGC+AGG	0.550172	6_4:+67259564	None:intergenic
AAAAGCAAAACTTCCTCAAA+TGG	0.452304	6_4:+67259558	None:intergenic
AATATGATAGAGAAACATAT+AGG	0.463712	6_4:-67259698	Msa0993870:intron
AATATTGGATCTAATGAAAG+TGG	0.519493	6_4:-67257470	Msa0993870:CDS
AATGACTGGAAGTACATCAA+TGG	0.550477	6_4:-67260206	Msa0993870:CDS
ACAGGATTACATCTACCGCG+TGG	0.703821	6_4:-67259786	Msa0993870:intron
AGATATTCCAGCGGTAGATA+TGG	0.449221	6_4:-67259911	Msa0993870:CDS
ATCTGGGCTCACAAAGGAAA+TGG	0.429905	6_4:+67259736	None:intergenic
ATGGTATACACTCAGCAATG+TGG	0.716399	6_4:-67260187	Msa0993870:CDS
ATGTGGTACAACGCTTCTTT+TGG	0.360475	6_4:-67260170	Msa0993870:CDS

Showing 1 to 10 of 50 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GCTTTGATTCTTAAGAATCT+TGG	-	chr6_4:67246858-67246877	Msa0993870:intron	30.0%
TTCTTAAGAATCTTGGTTTC+AGG	-	chr6_4:67246865-67246884	Msa0993870:intron	30.0%
TCTTAAGAATCTTGGTTTCA+GGG	-	chr6_4:67246866-67246885	Msa0993870:intron	30.0%
GAATTAGGCATATTTCTTGT+TGG	+	chr6_4:67246970-67246989	None:intergenic	30.0%
TTGTAGTGACTTTGTTAGTA+AGG	-	chr6_4:67247068-67247087	Msa0993870:intron	30.0%
TGTAGTGACTTTGTTAGTAA+GGG	-	chr6_4:67247069-67247088	Msa0993870:intron	30.0%
TGATTAACTACAACATTCCT+TGG	-	chr6_4:67247118-67247137	Msa0993870:intron	30.0%
TATATAGCACATCTTACGTT+TGG	+	chr6_4:67247147-67247166	None:intergenic	30.0%
GATAGAGAAACATATAGGTT+AGG	-	chr6_4:67247313-67247332	Msa0993870:intron	30.0%
AAAAGCAAAACTTCCTCAAA+TGG	+	chr6_4:67247451-67247470	None:intergenic	30.0%

Showing 1 to 10 of 895 entries

Previous1 2 3 4 5…90Next

Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	67246801	67260227	67246801	ID=Msa0993870;Name=Msa0993870
chr6_4	mRNA	67246801	67260227	67246801	ID=Msa0993870-mRNA-1;Parent=Msa0993870;Name=Msa0993870-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0\|0\|0\|0.66\|0.8\|0.83\|6\|0\|199
chr6_4	exon	67260111	67260227	67260111	ID=Msa0993870-mRNA-1:exon:12516;Parent=Msa0993870-mRNA-1
chr6_4	exon	67259879	67260016	67259879	ID=Msa0993870-mRNA-1:exon:12515;Parent=Msa0993870-mRNA-1
chr6_4	exon	67259699	67259804	67259699	ID=Msa0993870-mRNA-1:exon:12514;Parent=Msa0993870-mRNA-1
chr6_4	exon	67259518	67259606	67259518	ID=Msa0993870-mRNA-1:exon:12513;Parent=Msa0993870-mRNA-1
chr6_4	exon	67257432	67257572	67257432	ID=Msa0993870-mRNA-1:exon:12512;Parent=Msa0993870-mRNA-1
chr6_4	exon	67246801	67246806	67246801	ID=Msa0993870-mRNA-1:exon:12511;Parent=Msa0993870-mRNA-1
chr6_4	CDS	67260111	67260227	67260111	ID=Msa0993870-mRNA-1:cds;Parent=Msa0993870-mRNA-1
chr6_4	CDS	67259879	67260016	67259879	ID=Msa0993870-mRNA-1:cds;Parent=Msa0993870-mRNA-1
chr6_4	CDS	67259699	67259804	67259699	ID=Msa0993870-mRNA-1:cds;Parent=Msa0993870-mRNA-1
chr6_4	CDS	67259518	67259606	67259518	ID=Msa0993870-mRNA-1:cds;Parent=Msa0993870-mRNA-1
chr6_4	CDS	67257432	67257572	67257432	ID=Msa0993870-mRNA-1:cds;Parent=Msa0993870-mRNA-1
chr6_4	CDS	67246801	67246806	67246801	ID=Msa0993870-mRNA-1:cds;Parent=Msa0993870-mRNA-1

Gene Sequence

>Msa0993870

ATGACTGGAAGTACATCAATGGTATACACTCAGCAATGTGGTACAACGCTTCTTTTGGCTTTGATTCTTAAGAATCTTGGTTTCAGGGCCATCCCTATTATTAGTTATATGAGTCAGGCAAAGAAACTTGGATCCTTGAATGCGTTCAAGTCTGGGGAGTGCAATATTCTCATTTGTAGTGACTTTGTTAGTAAGGGACTAGATATTCCAGCGGTAGATATGGTGATTAACTACAACATTCCTTGGTATCCAAACGATTACATCTACCGCGTGGGATGGAATGTTGCTCATGTTAATGTTGCCATTTCCTTTGTGAGCCCAGATGAAAGGAGACATTTCAATATGATAGAGAAACATATAGGCAAGAAACTACCATTGTATCCTGCACCATTTGAGGAAGTTTTGCTTTTGGAAGGGTGTGCTATTGAGGCTGAAAGATTATCACAAGAGGTAGACTGGACGCCAGAGCTGCACAAAAATTTTGTGAAGGCAGTGGAGCAACTAGGCATTGATCACGCTATCCCTTCTCGAATATTGGATCTAATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTTCAGGTTTTG

Protein sequence

>Msa0993870

MTGSTSMVYTQQCGTTLLLALILKNLGFRAIPIISYMSQAKKLGSLNAFKSGECNILICSDFVSKGLDIPAVDMVINYNIPWYPNDYIYRVGWNVAHVNVAISFVSPDERRHFNMIEKHIGKKLPLYPAPFEEVLLLEGCAIEAERLSQEVDWTPELHKNFVKAVEQLGIDHAIPSRILDLMKVEGLTRHNVASHLQVL