Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999330 | XP_024627930.1 | 77.500 | 160 | 36 | 0 | 28 | 187 | 55 | 214 | 2.66e-46 | 168 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999330 | A0A396I0R2 | 71.186 | 177 | 30 | 2 | 26 | 187 | 53 | 223 | 5.30e-44 | 162 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0055450 | Msa0999330 | 0.811456 | 6.937532e-51 | -8.615850e-47 |
| Msa0999320 | Msa0999330 | 0.802724 | 4.897353e-49 | -8.615850e-47 |
| Msa0999330 | Msa0999380 | 0.978391 | 9.996092e-146 | -8.615850e-47 |
| Msa0999330 | Msa1001870 | 0.803011 | 4.273649e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999330 | MtrunA17_Chr4g0010341 | 71.186 | 177 | 30 | 2 | 26 | 187 | 53 | 223 | 1.02e-47 | 162 |
| Msa0999330 | MtrunA17_Chr0c01g0489551 | 52.885 | 104 | 21 | 4 | 1 | 76 | 1 | 104 | 2.20e-20 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 67 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTAGCCAGGGATCATC+TGG | 0.259827 | 6_4:+81276284 | Msa0999330:intron |
| TGGAGGGATTTGTTGTTGTT+GGG | 0.261186 | 6_4:-81276478 | None:intergenic |
| GTGGAGGGATTTGTTGTTGT+TGG | 0.265730 | 6_4:-81276479 | None:intergenic |
| TTGTGGAGGGATTTGTTGTT+GGG | 0.288260 | 6_4:-81276520 | None:intergenic |
| ACAACTGCTATAATCACTTT+TGG | 0.315472 | 6_4:+81276869 | Msa0999330:CDS |
| TATGGTGATGGCGCTGGTTT+AGG | 0.318133 | 6_4:+81276898 | Msa0999330:CDS |
| TATGGCACCATATCTCCTTC+TGG | 0.326343 | 6_4:+81276393 | Msa0999330:CDS |
| GTTGTGGAGGGATTTGTTGT+TGG | 0.342061 | 6_4:-81276521 | None:intergenic |
| GCTCTCCACCACCATTCATC+TGG | 0.344040 | 6_4:-81276623 | None:intergenic |
| TGTTGTTGTTGGGGAAAGGG+TGG | 0.390867 | 6_4:-81276549 | None:intergenic |
| GTTGTTGTTGGGGAAAGGGT+GGG | 0.411570 | 6_4:-81276548 | None:intergenic |
| CCAGTACATCCAGGACATTA+TGG | 0.412298 | 6_4:+81276375 | Msa0999330:CDS |
| ATTTGTTGTTGGGGAAAGGA+TGG | 0.414762 | 6_4:-81276510 | None:intergenic |
| TTTGTTGTTGGGGAAAGGAT+GGG | 0.417498 | 6_4:-81276509 | None:intergenic |
| ATTTGTTGTTGTTGGGGAAA+GGG | 0.418112 | 6_4:-81276471 | None:intergenic |
| GCGCTGGTTTAGGCTCTTTG+AGG | 0.420863 | 6_4:+81276908 | Msa0999330:CDS |
| AGGAGCAGTTACACTAGCTT+GGG | 0.433377 | 6_4:-81276313 | None:intergenic |
| AGGGATTTGTTGTTGGGGAA+AGG | 0.440301 | 6_4:-81276514 | None:intergenic |
| TAGTGTAACTGCTCCTGCTA+TGG | 0.449438 | 6_4:+81276320 | Msa0999330:CDS |
| GATTTGTTGTTGTTGGGGAA+AGG | 0.455161 | 6_4:-81276472 | None:intergenic |
| CCATAATGTCCTGGATGTAC+TGG | 0.455286 | 6_4:-81276375 | None:intergenic |
| GGAGGGATTTGTTGTTGTTG+GGG | 0.455458 | 6_4:-81276477 | None:intergenic |
| CTCTCCACCACCATTCATCT+GGG | 0.458401 | 6_4:-81276622 | None:intergenic |
| ATGGCACCATATCTCCTTCT+GGG | 0.466030 | 6_4:+81276394 | Msa0999330:CDS |
| GAAGGTCCCAGAAGGAGATA+TGG | 0.479336 | 6_4:-81276400 | None:intergenic |
| CAGGAGCAGTTACACTAGCT+TGG | 0.484693 | 6_4:-81276314 | None:intergenic |
| AGTGTAACTGCTCCTGCTAT+GGG | 0.490854 | 6_4:+81276321 | Msa0999330:CDS |
| TGTGGAGGGATTTGTTGTTG+GGG | 0.508078 | 6_4:-81276519 | None:intergenic |
| ATTATAGCAGTTGTGAATGA+TGG | 0.517926 | 6_4:-81276860 | None:intergenic |
| GTTGTTGTTGGGGAAAGGGA+AGG | 0.529196 | 6_4:-81276467 | None:intergenic |
| GGAGGAGCAGAACCCATAGC+AGG | 0.530680 | 6_4:-81276333 | None:intergenic |
| GCTTTGATAGCTTCAGCCGC+CGG | 0.540648 | 6_4:-81276838 | None:intergenic |
| TGTGGTGGGACTGAATATGG+TGG | 0.543627 | 6_4:-81276441 | None:intergenic |
| GCTTCAGCCGCCGGTTTGCA+AGG | 0.544900 | 6_4:-81276829 | None:intergenic |
| TGGTGGTGGAGAGCTGGTGC+CGG | 0.545706 | 6_4:+81276632 | Msa0999330:CDS |
| GATGAATGGTGGTGGAGAGC+TGG | 0.547547 | 6_4:+81276626 | Msa0999330:CDS |
| TACTGGAGGGTACATGAAAG+TGG | 0.548441 | 6_4:-81276358 | None:intergenic |
| CTTCTAGCCAGGGATCATCT+GGG | 0.554730 | 6_4:+81276285 | Msa0999330:intron |
| AAGACATATGGTGATGGCGC+TGG | 0.558327 | 6_4:+81276892 | Msa0999330:CDS |
| AGCAGTTACACTAGCTTGGG+GGG | 0.561893 | 6_4:-81276310 | None:intergenic |
| GTGGGAAATTATAGCTCGGA+GGG | 0.565553 | 6_4:-81276422 | None:intergenic |
| TCCAGGAAAACATCATCAGC+CGG | 0.566149 | 6_4:-81276651 | None:intergenic |
| AGAGCAGGGGCAACAACAGA+AGG | 0.569557 | 6_4:+81276189 | Msa0999330:CDS |
| GAGAATCTGTCGGATAATCC+AGG | 0.574135 | 6_4:-81276668 | None:intergenic |
| GGGTACATGAAAGTGGGAGG+AGG | 0.577493 | 6_4:-81276351 | None:intergenic |
| GTGGTGGGACTGAATATGGT+GGG | 0.582437 | 6_4:-81276440 | None:intergenic |
| GATGATGCAACCCAGATGAA+TGG | 0.586292 | 6_4:+81276612 | Msa0999330:CDS |
| TATACTTACGAGTTTCCACT+AGG | 0.592766 | 6_4:-81276711 | None:intergenic |
| CTCGGAGGGAAGGTCCCAGA+AGG | 0.596598 | 6_4:-81276408 | None:intergenic |
| GAAATTATAGCTCGGAGGGA+AGG | 0.598983 | 6_4:-81276418 | None:intergenic |
| CGATTCATCTTAAAGCCTAG+TGG | 0.601072 | 6_4:+81276696 | Msa0999330:CDS |
| GCAACCCAGATGAATGGTGG+TGG | 0.612815 | 6_4:+81276618 | Msa0999330:CDS |
| GATATGGTGCCATAATGTCC+TGG | 0.614784 | 6_4:-81276384 | None:intergenic |
| ATGTACCCTCCAGTACATCC+AGG | 0.615403 | 6_4:+81276366 | Msa0999330:CDS |
| TAATGTCCTGGATGTACTGG+AGG | 0.617732 | 6_4:-81276372 | None:intergenic |
| ACAAGAAAATGTGGTCGAAG+AGG | 0.618849 | 6_4:+81276590 | Msa0999330:CDS |
| TATGGTGGGAAATTATAGCT+CGG | 0.625799 | 6_4:-81276426 | None:intergenic |
| GAGCAGTTACACTAGCTTGG+GGG | 0.628033 | 6_4:-81276311 | None:intergenic |
| AATCGATCACGAGAATCTGT+CGG | 0.644712 | 6_4:-81276678 | None:intergenic |
| GCAGTTACACTAGCTTGGGG+GGG | 0.648978 | 6_4:-81276309 | None:intergenic |
| ACAATCCCAACAAGAAAATG+TGG | 0.650677 | 6_4:+81276581 | Msa0999330:CDS |
| GGAGCAGTTACACTAGCTTG+GGG | 0.654666 | 6_4:-81276312 | None:intergenic |
| ACTGGAGGGTACATGAAAGT+GGG | 0.657227 | 6_4:-81276357 | None:intergenic |
| GGAGGGTACATGAAAGTGGG+AGG | 0.681785 | 6_4:-81276354 | None:intergenic |
| AATGTCCTGGATGTACTGGA+GGG | 0.691701 | 6_4:-81276371 | None:intergenic |
| GGTGGGAAATTATAGCTCGG+AGG | 0.700859 | 6_4:-81276423 | None:intergenic |
| GATGCAACCCAGATGAATGG+TGG | 0.722050 | 6_4:+81276615 | Msa0999330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTGCTCTTTCCTTTATTTTT+CGG | - | chr6_4:81276176-81276195 | None:intergenic | 30.0% |
| GAAAAATAAAGGAAAGAGCA+GGG | + | chr6_4:81276175-81276194 | Msa0999330:CDS | 30.0% | |
| AAAAATAAAGGAAAGAGCAG+GGG | + | chr6_4:81276176-81276195 | Msa0999330:CDS | 30.0% | |
| ATTATAGCAGTTGTGAATGA+TGG | - | chr6_4:81276863-81276882 | None:intergenic | 30.0% | |
| ! | ACAACTGCTATAATCACTTT+TGG | + | chr6_4:81276869-81276888 | Msa0999330:CDS | 30.0% |
| !! | AATCACTTTTGGAAGACATA+TGG | + | chr6_4:81276880-81276899 | Msa0999330:CDS | 30.0% |
| !!! | CTGCTCTTTCCTTTATTTTT+CGG | - | chr6_4:81276176-81276195 | None:intergenic | 30.0% |
| GAAAAATAAAGGAAAGAGCA+GGG | + | chr6_4:81276175-81276194 | Msa0999330:CDS | 30.0% | |
| AAAAATAAAGGAAAGAGCAG+GGG | + | chr6_4:81276176-81276195 | Msa0999330:CDS | 30.0% | |
| ATTATAGCAGTTGTGAATGA+TGG | - | chr6_4:81276863-81276882 | None:intergenic | 30.0% | |
| ! | ACAACTGCTATAATCACTTT+TGG | + | chr6_4:81276869-81276888 | Msa0999330:CDS | 30.0% |
| !! | AATCACTTTTGGAAGACATA+TGG | + | chr6_4:81276880-81276899 | Msa0999330:CDS | 30.0% |
| !!! | CTCTTTCCTTTATTTTTCGG+AGG | - | chr6_4:81276173-81276192 | None:intergenic | 35.0% |
| CGAAAAATAAAGGAAAGAGC+AGG | + | chr6_4:81276174-81276193 | Msa0999330:CDS | 35.0% | |
| GAAGATGCAGTAAAAATGAC+AGG | - | chr6_4:81276269-81276288 | None:intergenic | 35.0% | |
| ! | TATGGTGGGAAATTATAGCT+CGG | - | chr6_4:81276429-81276448 | None:intergenic | 35.0% |
| !! | ATTTGTTGTTGTTGGGGAAA+GGG | - | chr6_4:81276474-81276493 | None:intergenic | 35.0% |
| !!! | TTTTGTTGTTGTTGGGGAAA+GGG | - | chr6_4:81276555-81276574 | None:intergenic | 35.0% |
| !!! | ATTTTGTTGTTGTTGGGGAA+AGG | - | chr6_4:81276556-81276575 | None:intergenic | 35.0% |
| !!! | TGGTGGATTTTGTTGTTGTT+GGG | - | chr6_4:81276562-81276581 | None:intergenic | 35.0% |
| ! | ACATTTTCTTGTTGGGATTG+TGG | - | chr6_4:81276582-81276601 | None:intergenic | 35.0% |
| ACAATCCCAACAAGAAAATG+TGG | + | chr6_4:81276581-81276600 | Msa0999330:CDS | 35.0% | |
| ! | TTCGACCACATTTTCTTGTT+GGG | - | chr6_4:81276589-81276608 | None:intergenic | 35.0% |
| TATACTTACGAGTTTCCACT+AGG | - | chr6_4:81276714-81276733 | None:intergenic | 35.0% | |
| !! | TTTTGGAAGACATATGGTGA+TGG | + | chr6_4:81276886-81276905 | Msa0999330:CDS | 35.0% |
| !!! | CTCTTTCCTTTATTTTTCGG+AGG | - | chr6_4:81276173-81276192 | None:intergenic | 35.0% |
| CGAAAAATAAAGGAAAGAGC+AGG | + | chr6_4:81276174-81276193 | Msa0999330:CDS | 35.0% | |
| GAAGATGCAGTAAAAATGAC+AGG | - | chr6_4:81276269-81276288 | None:intergenic | 35.0% | |
| ! | TATGGTGGGAAATTATAGCT+CGG | - | chr6_4:81276429-81276448 | None:intergenic | 35.0% |
| !! | ATTTGTTGTTGTTGGGGAAA+GGG | - | chr6_4:81276474-81276493 | None:intergenic | 35.0% |
| !!! | TTTTGTTGTTGTTGGGGAAA+GGG | - | chr6_4:81276555-81276574 | None:intergenic | 35.0% |
| !!! | ATTTTGTTGTTGTTGGGGAA+AGG | - | chr6_4:81276556-81276575 | None:intergenic | 35.0% |
| !!! | TGGTGGATTTTGTTGTTGTT+GGG | - | chr6_4:81276562-81276581 | None:intergenic | 35.0% |
| ! | ACATTTTCTTGTTGGGATTG+TGG | - | chr6_4:81276582-81276601 | None:intergenic | 35.0% |
| ACAATCCCAACAAGAAAATG+TGG | + | chr6_4:81276581-81276600 | Msa0999330:CDS | 35.0% | |
| ! | TTCGACCACATTTTCTTGTT+GGG | - | chr6_4:81276589-81276608 | None:intergenic | 35.0% |
| TATACTTACGAGTTTCCACT+AGG | - | chr6_4:81276714-81276733 | None:intergenic | 35.0% | |
| !! | TTTTGGAAGACATATGGTGA+TGG | + | chr6_4:81276886-81276905 | Msa0999330:CDS | 35.0% |
| CAGTAAAAATGACAGGCATG+GGG | - | chr6_4:81276262-81276281 | None:intergenic | 40.0% | |
| GCAGTAAAAATGACAGGCAT+GGG | - | chr6_4:81276263-81276282 | None:intergenic | 40.0% | |
| TGCAGTAAAAATGACAGGCA+TGG | - | chr6_4:81276264-81276283 | None:intergenic | 40.0% | |
| ! | TTTTACTGCATCTTCTAGCC+AGG | + | chr6_4:81276274-81276293 | Msa0999330:intron | 40.0% |
| TTTACTGCATCTTCTAGCCA+GGG | + | chr6_4:81276275-81276294 | Msa0999330:intron | 40.0% | |
| !! | TTTTGTGGTGGGACTGAATA+TGG | - | chr6_4:81276447-81276466 | None:intergenic | 40.0% |
| !! | GATTTGTTGTTGTTGGGGAA+AGG | - | chr6_4:81276475-81276494 | None:intergenic | 40.0% |
| !! | TGGAGGGATTTGTTGTTGTT+GGG | - | chr6_4:81276481-81276500 | None:intergenic | 40.0% |
| !! | TTTGTTGTTGGGGAAAGGAT+GGG | - | chr6_4:81276512-81276531 | None:intergenic | 40.0% |
| !! | ATTTGTTGTTGGGGAAAGGA+TGG | - | chr6_4:81276513-81276532 | None:intergenic | 40.0% |
| !! | TTGTGGAGGGATTTGTTGTT+GGG | - | chr6_4:81276484-81276503 | None:intergenic | 40.0% |
| !!! | GGTGGATTTTGTTGTTGTTG+GGG | - | chr6_4:81276561-81276580 | None:intergenic | 40.0% |
| !!! | GTGGTGGATTTTGTTGTTGT+TGG | - | chr6_4:81276563-81276582 | None:intergenic | 40.0% |
| ! | TTTTCTTGTTGGGATTGTGG+TGG | - | chr6_4:81276579-81276598 | None:intergenic | 40.0% |
| ! | CTTCGACCACATTTTCTTGT+TGG | - | chr6_4:81276590-81276609 | None:intergenic | 40.0% |
| ACAAGAAAATGTGGTCGAAG+AGG | + | chr6_4:81276590-81276609 | Msa0999330:CDS | 40.0% | |
| AATCGATCACGAGAATCTGT+CGG | - | chr6_4:81276681-81276700 | None:intergenic | 40.0% | |
| CGATTCATCTTAAAGCCTAG+TGG | + | chr6_4:81276696-81276715 | Msa0999330:CDS | 40.0% | |
| CAGTAAAAATGACAGGCATG+GGG | - | chr6_4:81276262-81276281 | None:intergenic | 40.0% | |
| GCAGTAAAAATGACAGGCAT+GGG | - | chr6_4:81276263-81276282 | None:intergenic | 40.0% | |
| TGCAGTAAAAATGACAGGCA+TGG | - | chr6_4:81276264-81276283 | None:intergenic | 40.0% | |
| ! | TTTTACTGCATCTTCTAGCC+AGG | + | chr6_4:81276274-81276293 | Msa0999330:intron | 40.0% |
| TTTACTGCATCTTCTAGCCA+GGG | + | chr6_4:81276275-81276294 | Msa0999330:intron | 40.0% | |
| !! | TTTTGTGGTGGGACTGAATA+TGG | - | chr6_4:81276447-81276466 | None:intergenic | 40.0% |
| !! | GATTTGTTGTTGTTGGGGAA+AGG | - | chr6_4:81276475-81276494 | None:intergenic | 40.0% |
| !! | TGGAGGGATTTGTTGTTGTT+GGG | - | chr6_4:81276481-81276500 | None:intergenic | 40.0% |
| !! | TTTGTTGTTGGGGAAAGGAT+GGG | - | chr6_4:81276512-81276531 | None:intergenic | 40.0% |
| !! | ATTTGTTGTTGGGGAAAGGA+TGG | - | chr6_4:81276513-81276532 | None:intergenic | 40.0% |
| !! | TTGTGGAGGGATTTGTTGTT+GGG | - | chr6_4:81276484-81276503 | None:intergenic | 40.0% |
| !!! | GGTGGATTTTGTTGTTGTTG+GGG | - | chr6_4:81276561-81276580 | None:intergenic | 40.0% |
| !!! | GTGGTGGATTTTGTTGTTGT+TGG | - | chr6_4:81276563-81276582 | None:intergenic | 40.0% |
| ! | TTTTCTTGTTGGGATTGTGG+TGG | - | chr6_4:81276579-81276598 | None:intergenic | 40.0% |
| ! | CTTCGACCACATTTTCTTGT+TGG | - | chr6_4:81276590-81276609 | None:intergenic | 40.0% |
| ACAAGAAAATGTGGTCGAAG+AGG | + | chr6_4:81276590-81276609 | Msa0999330:CDS | 40.0% | |
| AATCGATCACGAGAATCTGT+CGG | - | chr6_4:81276681-81276700 | None:intergenic | 40.0% | |
| CGATTCATCTTAAAGCCTAG+TGG | + | chr6_4:81276696-81276715 | Msa0999330:CDS | 40.0% | |
| ! | AGGAGCAGTTACACTAGCTT+GGG | - | chr6_4:81276316-81276335 | None:intergenic | 45.0% |
| TAGTGTAACTGCTCCTGCTA+TGG | + | chr6_4:81276320-81276339 | Msa0999330:CDS | 45.0% | |
| AGTGTAACTGCTCCTGCTAT+GGG | + | chr6_4:81276321-81276340 | Msa0999330:CDS | 45.0% | |
| ! | ACTGGAGGGTACATGAAAGT+GGG | - | chr6_4:81276360-81276379 | None:intergenic | 45.0% |
| ! | TACTGGAGGGTACATGAAAG+TGG | - | chr6_4:81276361-81276380 | None:intergenic | 45.0% |
| AATGTCCTGGATGTACTGGA+GGG | - | chr6_4:81276374-81276393 | None:intergenic | 45.0% | |
| TAATGTCCTGGATGTACTGG+AGG | - | chr6_4:81276375-81276394 | None:intergenic | 45.0% | |
| CCATAATGTCCTGGATGTAC+TGG | - | chr6_4:81276378-81276397 | None:intergenic | 45.0% | |
| CCAGTACATCCAGGACATTA+TGG | + | chr6_4:81276375-81276394 | Msa0999330:CDS | 45.0% | |
| !! | GATATGGTGCCATAATGTCC+TGG | - | chr6_4:81276387-81276406 | None:intergenic | 45.0% |
| TATGGCACCATATCTCCTTC+TGG | + | chr6_4:81276393-81276412 | Msa0999330:CDS | 45.0% | |
| ATGGCACCATATCTCCTTCT+GGG | + | chr6_4:81276394-81276413 | Msa0999330:CDS | 45.0% | |
| GAAATTATAGCTCGGAGGGA+AGG | - | chr6_4:81276421-81276440 | None:intergenic | 45.0% | |
| GTGGGAAATTATAGCTCGGA+GGG | - | chr6_4:81276425-81276444 | None:intergenic | 45.0% | |
| !! | GAAAGGGAAGGTTTTGTGGT+GGG | - | chr6_4:81276458-81276477 | None:intergenic | 45.0% |
| !! | GGAGGGATTTGTTGTTGTTG+GGG | - | chr6_4:81276480-81276499 | None:intergenic | 45.0% |
| !! | GTGGAGGGATTTGTTGTTGT+TGG | - | chr6_4:81276482-81276501 | None:intergenic | 45.0% |
| !!! | AGGATGGGTTTTGTTGTGGA+GGG | - | chr6_4:81276497-81276516 | None:intergenic | 45.0% |
| !!! | AAGGATGGGTTTTGTTGTGG+AGG | - | chr6_4:81276498-81276517 | None:intergenic | 45.0% |
| !!! | GGAAAGGATGGGTTTTGTTG+TGG | - | chr6_4:81276501-81276520 | None:intergenic | 45.0% |
| !! | AGGGATTTGTTGTTGGGGAA+AGG | - | chr6_4:81276517-81276536 | None:intergenic | 45.0% |
| !! | TGTGGAGGGATTTGTTGTTG+GGG | - | chr6_4:81276483-81276502 | None:intergenic | 45.0% |
| !! | GTTGTGGAGGGATTTGTTGT+TGG | - | chr6_4:81276485-81276504 | None:intergenic | 45.0% |
| GATGATGCAACCCAGATGAA+TGG | + | chr6_4:81276612-81276631 | Msa0999330:CDS | 45.0% | |
| TCCAGGAAAACATCATCAGC+CGG | - | chr6_4:81276654-81276673 | None:intergenic | 45.0% | |
| GAGAATCTGTCGGATAATCC+AGG | - | chr6_4:81276671-81276690 | None:intergenic | 45.0% | |
| ! | CAGCTTTTTGCCTTGCAAAC+CGG | + | chr6_4:81276819-81276838 | Msa0999330:intron | 45.0% |
| ! | AGGAGCAGTTACACTAGCTT+GGG | - | chr6_4:81276316-81276335 | None:intergenic | 45.0% |
| TAGTGTAACTGCTCCTGCTA+TGG | + | chr6_4:81276320-81276339 | Msa0999330:CDS | 45.0% | |
| AGTGTAACTGCTCCTGCTAT+GGG | + | chr6_4:81276321-81276340 | Msa0999330:CDS | 45.0% | |
| ! | ACTGGAGGGTACATGAAAGT+GGG | - | chr6_4:81276360-81276379 | None:intergenic | 45.0% |
| ! | TACTGGAGGGTACATGAAAG+TGG | - | chr6_4:81276361-81276380 | None:intergenic | 45.0% |
| AATGTCCTGGATGTACTGGA+GGG | - | chr6_4:81276374-81276393 | None:intergenic | 45.0% | |
| TAATGTCCTGGATGTACTGG+AGG | - | chr6_4:81276375-81276394 | None:intergenic | 45.0% | |
| CCATAATGTCCTGGATGTAC+TGG | - | chr6_4:81276378-81276397 | None:intergenic | 45.0% | |
| CCAGTACATCCAGGACATTA+TGG | + | chr6_4:81276375-81276394 | Msa0999330:CDS | 45.0% | |
| !! | GATATGGTGCCATAATGTCC+TGG | - | chr6_4:81276387-81276406 | None:intergenic | 45.0% |
| TATGGCACCATATCTCCTTC+TGG | + | chr6_4:81276393-81276412 | Msa0999330:CDS | 45.0% | |
| ATGGCACCATATCTCCTTCT+GGG | + | chr6_4:81276394-81276413 | Msa0999330:CDS | 45.0% | |
| GAAATTATAGCTCGGAGGGA+AGG | - | chr6_4:81276421-81276440 | None:intergenic | 45.0% | |
| GTGGGAAATTATAGCTCGGA+GGG | - | chr6_4:81276425-81276444 | None:intergenic | 45.0% | |
| !! | GAAAGGGAAGGTTTTGTGGT+GGG | - | chr6_4:81276458-81276477 | None:intergenic | 45.0% |
| !! | GGAGGGATTTGTTGTTGTTG+GGG | - | chr6_4:81276480-81276499 | None:intergenic | 45.0% |
| !! | GTGGAGGGATTTGTTGTTGT+TGG | - | chr6_4:81276482-81276501 | None:intergenic | 45.0% |
| !!! | AGGATGGGTTTTGTTGTGGA+GGG | - | chr6_4:81276497-81276516 | None:intergenic | 45.0% |
| !!! | AAGGATGGGTTTTGTTGTGG+AGG | - | chr6_4:81276498-81276517 | None:intergenic | 45.0% |
| !!! | GGAAAGGATGGGTTTTGTTG+TGG | - | chr6_4:81276501-81276520 | None:intergenic | 45.0% |
| !! | AGGGATTTGTTGTTGGGGAA+AGG | - | chr6_4:81276517-81276536 | None:intergenic | 45.0% |
| !! | TGTGGAGGGATTTGTTGTTG+GGG | - | chr6_4:81276483-81276502 | None:intergenic | 45.0% |
| !! | GTTGTGGAGGGATTTGTTGT+TGG | - | chr6_4:81276485-81276504 | None:intergenic | 45.0% |
| GATGATGCAACCCAGATGAA+TGG | + | chr6_4:81276612-81276631 | Msa0999330:CDS | 45.0% | |
| TCCAGGAAAACATCATCAGC+CGG | - | chr6_4:81276654-81276673 | None:intergenic | 45.0% | |
| GAGAATCTGTCGGATAATCC+AGG | - | chr6_4:81276671-81276690 | None:intergenic | 45.0% | |
| ! | CAGCTTTTTGCCTTGCAAAC+CGG | + | chr6_4:81276819-81276838 | Msa0999330:intron | 45.0% |
| GGCAACAACAGAAGGCTGTA+TGG | + | chr6_4:81276197-81276216 | Msa0999330:intron | 50.0% | |
| GCTGTATGGTACTCACGTTG+TGG | + | chr6_4:81276211-81276230 | Msa0999330:intron | 50.0% | |
| TCTTCTAGCCAGGGATCATC+TGG | + | chr6_4:81276284-81276303 | Msa0999330:intron | 50.0% | |
| CTTCTAGCCAGGGATCATCT+GGG | + | chr6_4:81276285-81276304 | Msa0999330:intron | 50.0% | |
| ! | AGCAGTTACACTAGCTTGGG+GGG | - | chr6_4:81276313-81276332 | None:intergenic | 50.0% |
| ! | GAGCAGTTACACTAGCTTGG+GGG | - | chr6_4:81276314-81276333 | None:intergenic | 50.0% |
| ! | GGAGCAGTTACACTAGCTTG+GGG | - | chr6_4:81276315-81276334 | None:intergenic | 50.0% |
| CAGGAGCAGTTACACTAGCT+TGG | - | chr6_4:81276317-81276336 | None:intergenic | 50.0% | |
| ATGTACCCTCCAGTACATCC+AGG | + | chr6_4:81276366-81276385 | Msa0999330:CDS | 50.0% | |
| GAAGGTCCCAGAAGGAGATA+TGG | - | chr6_4:81276403-81276422 | None:intergenic | 50.0% | |
| GGTGGGAAATTATAGCTCGG+AGG | - | chr6_4:81276426-81276445 | None:intergenic | 50.0% | |
| ! | GTGGTGGGACTGAATATGGT+GGG | - | chr6_4:81276443-81276462 | None:intergenic | 50.0% |
| ! | TGTGGTGGGACTGAATATGG+TGG | - | chr6_4:81276444-81276463 | None:intergenic | 50.0% |
| !! | GGAAAGGGAAGGTTTTGTGG+TGG | - | chr6_4:81276459-81276478 | None:intergenic | 50.0% |
| ! | TGGGGAAAGGGAAGGTTTTG+TGG | - | chr6_4:81276462-81276481 | None:intergenic | 50.0% |
| ! | GTTGTTGTTGGGGAAAGGGA+AGG | - | chr6_4:81276470-81276489 | None:intergenic | 50.0% |
| !!! | AGGGTGGGTTTTGTTGTGGA+GGG | - | chr6_4:81276536-81276555 | None:intergenic | 50.0% |
| !!! | AAGGGTGGGTTTTGTTGTGG+AGG | - | chr6_4:81276537-81276556 | None:intergenic | 50.0% |
| !!! | GGAAAGGGTGGGTTTTGTTG+TGG | - | chr6_4:81276540-81276559 | None:intergenic | 50.0% |
| ! | GTTGTTGTTGGGGAAAGGGT+GGG | - | chr6_4:81276551-81276570 | None:intergenic | 50.0% |
| ! | TGTTGTTGTTGGGGAAAGGG+TGG | - | chr6_4:81276471-81276490 | None:intergenic | 50.0% |
| GATGCAACCCAGATGAATGG+TGG | + | chr6_4:81276615-81276634 | Msa0999330:CDS | 50.0% | |
| CTCTCCACCACCATTCATCT+GGG | - | chr6_4:81276625-81276644 | None:intergenic | 50.0% | |
| ! | CTTTTTGCCTTGCAAACCGG+CGG | + | chr6_4:81276822-81276841 | Msa0999330:CDS | 50.0% |
| !! | AAGACATATGGTGATGGCGC+TGG | + | chr6_4:81276892-81276911 | Msa0999330:CDS | 50.0% |
| !! | TATGGTGATGGCGCTGGTTT+AGG | + | chr6_4:81276898-81276917 | Msa0999330:CDS | 50.0% |
| GGCAACAACAGAAGGCTGTA+TGG | + | chr6_4:81276197-81276216 | Msa0999330:intron | 50.0% | |
| GCTGTATGGTACTCACGTTG+TGG | + | chr6_4:81276211-81276230 | Msa0999330:intron | 50.0% | |
| TCTTCTAGCCAGGGATCATC+TGG | + | chr6_4:81276284-81276303 | Msa0999330:intron | 50.0% | |
| CTTCTAGCCAGGGATCATCT+GGG | + | chr6_4:81276285-81276304 | Msa0999330:intron | 50.0% | |
| ! | AGCAGTTACACTAGCTTGGG+GGG | - | chr6_4:81276313-81276332 | None:intergenic | 50.0% |
| ! | GAGCAGTTACACTAGCTTGG+GGG | - | chr6_4:81276314-81276333 | None:intergenic | 50.0% |
| ! | GGAGCAGTTACACTAGCTTG+GGG | - | chr6_4:81276315-81276334 | None:intergenic | 50.0% |
| CAGGAGCAGTTACACTAGCT+TGG | - | chr6_4:81276317-81276336 | None:intergenic | 50.0% | |
| ATGTACCCTCCAGTACATCC+AGG | + | chr6_4:81276366-81276385 | Msa0999330:CDS | 50.0% | |
| GAAGGTCCCAGAAGGAGATA+TGG | - | chr6_4:81276403-81276422 | None:intergenic | 50.0% | |
| GGTGGGAAATTATAGCTCGG+AGG | - | chr6_4:81276426-81276445 | None:intergenic | 50.0% | |
| ! | GTGGTGGGACTGAATATGGT+GGG | - | chr6_4:81276443-81276462 | None:intergenic | 50.0% |
| ! | TGTGGTGGGACTGAATATGG+TGG | - | chr6_4:81276444-81276463 | None:intergenic | 50.0% |
| !! | GGAAAGGGAAGGTTTTGTGG+TGG | - | chr6_4:81276459-81276478 | None:intergenic | 50.0% |
| ! | TGGGGAAAGGGAAGGTTTTG+TGG | - | chr6_4:81276462-81276481 | None:intergenic | 50.0% |
| ! | GTTGTTGTTGGGGAAAGGGA+AGG | - | chr6_4:81276470-81276489 | None:intergenic | 50.0% |
| !!! | AGGGTGGGTTTTGTTGTGGA+GGG | - | chr6_4:81276536-81276555 | None:intergenic | 50.0% |
| !!! | AAGGGTGGGTTTTGTTGTGG+AGG | - | chr6_4:81276537-81276556 | None:intergenic | 50.0% |
| !!! | GGAAAGGGTGGGTTTTGTTG+TGG | - | chr6_4:81276540-81276559 | None:intergenic | 50.0% |
| ! | GTTGTTGTTGGGGAAAGGGT+GGG | - | chr6_4:81276551-81276570 | None:intergenic | 50.0% |
| ! | TGTTGTTGTTGGGGAAAGGG+TGG | - | chr6_4:81276471-81276490 | None:intergenic | 50.0% |
| GATGCAACCCAGATGAATGG+TGG | + | chr6_4:81276615-81276634 | Msa0999330:CDS | 50.0% | |
| CTCTCCACCACCATTCATCT+GGG | - | chr6_4:81276625-81276644 | None:intergenic | 50.0% | |
| ! | CTTTTTGCCTTGCAAACCGG+CGG | + | chr6_4:81276822-81276841 | Msa0999330:CDS | 50.0% |
| !! | AAGACATATGGTGATGGCGC+TGG | + | chr6_4:81276892-81276911 | Msa0999330:CDS | 50.0% |
| !! | TATGGTGATGGCGCTGGTTT+AGG | + | chr6_4:81276898-81276917 | Msa0999330:CDS | 50.0% |
| AGAGCAGGGGCAACAACAGA+AGG | + | chr6_4:81276189-81276208 | Msa0999330:CDS | 55.0% | |
| ! | GCAGTTACACTAGCTTGGGG+GGG | - | chr6_4:81276312-81276331 | None:intergenic | 55.0% |
| GGGTACATGAAAGTGGGAGG+AGG | - | chr6_4:81276354-81276373 | None:intergenic | 55.0% | |
| ! | GGAGGGTACATGAAAGTGGG+AGG | - | chr6_4:81276357-81276376 | None:intergenic | 55.0% |
| GCAACCCAGATGAATGGTGG+TGG | + | chr6_4:81276618-81276637 | Msa0999330:CDS | 55.0% | |
| GCTCTCCACCACCATTCATC+TGG | - | chr6_4:81276626-81276645 | None:intergenic | 55.0% | |
| !! | GATGAATGGTGGTGGAGAGC+TGG | + | chr6_4:81276626-81276645 | Msa0999330:CDS | 55.0% |
| !! | GCCGGCTGATGATGTTTTCC+TGG | + | chr6_4:81276650-81276669 | Msa0999330:CDS | 55.0% |
| ! | GCTTTGATAGCTTCAGCCGC+CGG | - | chr6_4:81276841-81276860 | None:intergenic | 55.0% |
| !! | GCGCTGGTTTAGGCTCTTTG+AGG | + | chr6_4:81276908-81276927 | Msa0999330:CDS | 55.0% |
| AGAGCAGGGGCAACAACAGA+AGG | + | chr6_4:81276189-81276208 | Msa0999330:CDS | 55.0% | |
| ! | GCAGTTACACTAGCTTGGGG+GGG | - | chr6_4:81276312-81276331 | None:intergenic | 55.0% |
| GGGTACATGAAAGTGGGAGG+AGG | - | chr6_4:81276354-81276373 | None:intergenic | 55.0% | |
| ! | GGAGGGTACATGAAAGTGGG+AGG | - | chr6_4:81276357-81276376 | None:intergenic | 55.0% |
| GCAACCCAGATGAATGGTGG+TGG | + | chr6_4:81276618-81276637 | Msa0999330:CDS | 55.0% | |
| GCTCTCCACCACCATTCATC+TGG | - | chr6_4:81276626-81276645 | None:intergenic | 55.0% | |
| !! | GATGAATGGTGGTGGAGAGC+TGG | + | chr6_4:81276626-81276645 | Msa0999330:CDS | 55.0% |
| !! | GCCGGCTGATGATGTTTTCC+TGG | + | chr6_4:81276650-81276669 | Msa0999330:CDS | 55.0% |
| ! | GCTTTGATAGCTTCAGCCGC+CGG | - | chr6_4:81276841-81276860 | None:intergenic | 55.0% |
| !! | GCGCTGGTTTAGGCTCTTTG+AGG | + | chr6_4:81276908-81276927 | Msa0999330:CDS | 55.0% |
| GGAGGAGCAGAACCCATAGC+AGG | - | chr6_4:81276336-81276355 | None:intergenic | 60.0% | |
| GGAGGAGCAGAACCCATAGC+AGG | - | chr6_4:81276336-81276355 | None:intergenic | 60.0% | |
| CTCGGAGGGAAGGTCCCAGA+AGG | - | chr6_4:81276411-81276430 | None:intergenic | 65.0% | |
| !! | TGGTGGTGGAGAGCTGGTGC+CGG | + | chr6_4:81276632-81276651 | Msa0999330:CDS | 65.0% |
| !! | GCTTCAGCCGCCGGTTTGCA+AGG | - | chr6_4:81276832-81276851 | None:intergenic | 65.0% |
| CTCGGAGGGAAGGTCCCAGA+AGG | - | chr6_4:81276411-81276430 | None:intergenic | 65.0% | |
| !! | TGGTGGTGGAGAGCTGGTGC+CGG | + | chr6_4:81276632-81276651 | Msa0999330:CDS | 65.0% |
| !! | GCTTCAGCCGCCGGTTTGCA+AGG | - | chr6_4:81276832-81276851 | None:intergenic | 65.0% |
| GGGGGGACCCAGATGATCCC+TGG | - | chr6_4:81276295-81276314 | None:intergenic | 70.0% | |
| GGGGGGACCCAGATGATCCC+TGG | - | chr6_4:81276295-81276314 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 81276167 | 81276966 | 81276167 | ID=Msa0999330;Name=Msa0999330 |
| chr6_4 | mRNA | 81276167 | 81276966 | 81276167 | ID=Msa0999330-mRNA-1;Parent=Msa0999330;Name=Msa0999330-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.5|0|1|0.5|0.33|3|0|206 |
| chr6_4 | exon | 81276167 | 81276213 | 81276167 | ID=Msa0999330-mRNA-1:exon:15521;Parent=Msa0999330-mRNA-1 |
| chr6_4 | exon | 81276296 | 81276724 | 81276296 | ID=Msa0999330-mRNA-1:exon:15522;Parent=Msa0999330-mRNA-1 |
| chr6_4 | exon | 81276822 | 81276966 | 81276822 | ID=Msa0999330-mRNA-1:exon:15523;Parent=Msa0999330-mRNA-1 |
| chr6_4 | CDS | 81276167 | 81276213 | 81276167 | ID=Msa0999330-mRNA-1:cds;Parent=Msa0999330-mRNA-1 |
| chr6_4 | CDS | 81276296 | 81276724 | 81276296 | ID=Msa0999330-mRNA-1:cds;Parent=Msa0999330-mRNA-1 |
| chr6_4 | CDS | 81276822 | 81276966 | 81276822 | ID=Msa0999330-mRNA-1:cds;Parent=Msa0999330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
