Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999380 | XP_024627930.1 | 77.500 | 160 | 36 | 0 | 28 | 187 | 55 | 214 | 2.66e-46 | 168 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999380 | A0A396I0R2 | 71.186 | 177 | 30 | 2 | 26 | 187 | 53 | 223 | 5.30e-44 | 162 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0055450 | Msa0999380 | 0.820945 | 5.244921e-53 | -8.615850e-47 |
| Msa0451400 | Msa0999380 | 0.801973 | 6.993465e-49 | -8.615850e-47 |
| Msa0999320 | Msa0999380 | 0.817124 | 3.880940e-52 | -8.615850e-47 |
| Msa0999330 | Msa0999380 | 0.978391 | 9.996092e-146 | -8.615850e-47 |
| Msa0999350 | Msa0999380 | 0.806001 | 1.016651e-49 | -8.615850e-47 |
| Msa0999380 | Msa0999400 | 0.815728 | 7.965649e-52 | -8.615850e-47 |
| Msa0999380 | Msa1001870 | 0.817538 | 3.131052e-52 | -8.615850e-47 |
| Msa0999380 | Msa1431850 | 0.800570 | 1.354748e-48 | -8.615850e-47 |
| Msa0329620 | Msa0999380 | 0.800057 | 1.722845e-48 | -8.615850e-47 |
| Msa0515950 | Msa0999380 | 0.807528 | 4.838079e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999380 | MtrunA17_Chr4g0010341 | 71.186 | 177 | 30 | 2 | 26 | 187 | 53 | 223 | 1.02e-47 | 162 |
| Msa0999380 | MtrunA17_Chr0c01g0489551 | 52.885 | 104 | 21 | 4 | 1 | 76 | 1 | 104 | 2.20e-20 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 67 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTAGCCAGGGATCATC+TGG | 0.259827 | 6_4:+81335388 | Msa0999380:intron |
| TGGAGGGATTTGTTGTTGTT+GGG | 0.261186 | 6_4:-81335582 | None:intergenic |
| GTGGAGGGATTTGTTGTTGT+TGG | 0.265730 | 6_4:-81335583 | None:intergenic |
| TTGTGGAGGGATTTGTTGTT+GGG | 0.288260 | 6_4:-81335624 | None:intergenic |
| ACAACTGCTATAATCACTTT+TGG | 0.315472 | 6_4:+81335973 | Msa0999380:CDS |
| TATGGTGATGGCGCTGGTTT+AGG | 0.318133 | 6_4:+81336002 | Msa0999380:CDS |
| TATGGCACCATATCTCCTTC+TGG | 0.326343 | 6_4:+81335497 | Msa0999380:CDS |
| GTTGTGGAGGGATTTGTTGT+TGG | 0.342061 | 6_4:-81335625 | None:intergenic |
| GCTCTCCACCACCATTCATC+TGG | 0.344040 | 6_4:-81335727 | None:intergenic |
| TGTTGTTGTTGGGGAAAGGG+TGG | 0.390867 | 6_4:-81335653 | None:intergenic |
| GTTGTTGTTGGGGAAAGGGT+GGG | 0.411570 | 6_4:-81335652 | None:intergenic |
| CCAGTACATCCAGGACATTA+TGG | 0.412298 | 6_4:+81335479 | Msa0999380:CDS |
| ATTTGTTGTTGGGGAAAGGA+TGG | 0.414762 | 6_4:-81335614 | None:intergenic |
| TTTGTTGTTGGGGAAAGGAT+GGG | 0.417498 | 6_4:-81335613 | None:intergenic |
| ATTTGTTGTTGTTGGGGAAA+GGG | 0.418112 | 6_4:-81335575 | None:intergenic |
| GCGCTGGTTTAGGCTCTTTG+AGG | 0.420863 | 6_4:+81336012 | Msa0999380:CDS |
| AGGAGCAGTTACACTAGCTT+GGG | 0.433377 | 6_4:-81335417 | None:intergenic |
| AGGGATTTGTTGTTGGGGAA+AGG | 0.440301 | 6_4:-81335618 | None:intergenic |
| TAGTGTAACTGCTCCTGCTA+TGG | 0.449438 | 6_4:+81335424 | Msa0999380:CDS |
| GATTTGTTGTTGTTGGGGAA+AGG | 0.455161 | 6_4:-81335576 | None:intergenic |
| CCATAATGTCCTGGATGTAC+TGG | 0.455286 | 6_4:-81335479 | None:intergenic |
| GGAGGGATTTGTTGTTGTTG+GGG | 0.455458 | 6_4:-81335581 | None:intergenic |
| CTCTCCACCACCATTCATCT+GGG | 0.458401 | 6_4:-81335726 | None:intergenic |
| ATGGCACCATATCTCCTTCT+GGG | 0.466030 | 6_4:+81335498 | Msa0999380:CDS |
| GAAGGTCCCAGAAGGAGATA+TGG | 0.479336 | 6_4:-81335504 | None:intergenic |
| CAGGAGCAGTTACACTAGCT+TGG | 0.484693 | 6_4:-81335418 | None:intergenic |
| AGTGTAACTGCTCCTGCTAT+GGG | 0.490854 | 6_4:+81335425 | Msa0999380:CDS |
| TGTGGAGGGATTTGTTGTTG+GGG | 0.508078 | 6_4:-81335623 | None:intergenic |
| ATTATAGCAGTTGTGAATGA+TGG | 0.517926 | 6_4:-81335964 | None:intergenic |
| GTTGTTGTTGGGGAAAGGGA+AGG | 0.529196 | 6_4:-81335571 | None:intergenic |
| GGAGGAGCAGAACCCATAGC+AGG | 0.530680 | 6_4:-81335437 | None:intergenic |
| GCTTTGATAGCTTCAGCCGC+CGG | 0.540648 | 6_4:-81335942 | None:intergenic |
| TGTGGTGGGACTGAATATGG+TGG | 0.543627 | 6_4:-81335545 | None:intergenic |
| GCTTCAGCCGCCGGTTTGCA+AGG | 0.544900 | 6_4:-81335933 | None:intergenic |
| TGGTGGTGGAGAGCTGGTGC+CGG | 0.545706 | 6_4:+81335736 | Msa0999380:CDS |
| GATGAATGGTGGTGGAGAGC+TGG | 0.547547 | 6_4:+81335730 | Msa0999380:CDS |
| TACTGGAGGGTACATGAAAG+TGG | 0.548441 | 6_4:-81335462 | None:intergenic |
| CTTCTAGCCAGGGATCATCT+GGG | 0.554730 | 6_4:+81335389 | Msa0999380:intron |
| AAGACATATGGTGATGGCGC+TGG | 0.558327 | 6_4:+81335996 | Msa0999380:CDS |
| AGCAGTTACACTAGCTTGGG+GGG | 0.561893 | 6_4:-81335414 | None:intergenic |
| GTGGGAAATTATAGCTCGGA+GGG | 0.565553 | 6_4:-81335526 | None:intergenic |
| TCCAGGAAAACATCATCAGC+CGG | 0.566149 | 6_4:-81335755 | None:intergenic |
| AGAGCAGGGGCAACAACAGA+AGG | 0.569557 | 6_4:+81335293 | Msa0999380:CDS |
| GAGAATCTGTCGGATAATCC+AGG | 0.574135 | 6_4:-81335772 | None:intergenic |
| GGGTACATGAAAGTGGGAGG+AGG | 0.577493 | 6_4:-81335455 | None:intergenic |
| GTGGTGGGACTGAATATGGT+GGG | 0.582437 | 6_4:-81335544 | None:intergenic |
| GATGATGCAACCCAGATGAA+TGG | 0.586292 | 6_4:+81335716 | Msa0999380:CDS |
| TATACTTACGAGTTTCCACT+AGG | 0.592766 | 6_4:-81335815 | None:intergenic |
| CTCGGAGGGAAGGTCCCAGA+AGG | 0.596598 | 6_4:-81335512 | None:intergenic |
| GAAATTATAGCTCGGAGGGA+AGG | 0.598983 | 6_4:-81335522 | None:intergenic |
| CGATTCATCTTAAAGCCTAG+TGG | 0.601072 | 6_4:+81335800 | Msa0999380:CDS |
| GCAACCCAGATGAATGGTGG+TGG | 0.612815 | 6_4:+81335722 | Msa0999380:CDS |
| GATATGGTGCCATAATGTCC+TGG | 0.614784 | 6_4:-81335488 | None:intergenic |
| ATGTACCCTCCAGTACATCC+AGG | 0.615403 | 6_4:+81335470 | Msa0999380:CDS |
| TAATGTCCTGGATGTACTGG+AGG | 0.617732 | 6_4:-81335476 | None:intergenic |
| ACAAGAAAATGTGGTCGAAG+AGG | 0.618849 | 6_4:+81335694 | Msa0999380:CDS |
| TATGGTGGGAAATTATAGCT+CGG | 0.625799 | 6_4:-81335530 | None:intergenic |
| GAGCAGTTACACTAGCTTGG+GGG | 0.628033 | 6_4:-81335415 | None:intergenic |
| AATCGATCACGAGAATCTGT+CGG | 0.644712 | 6_4:-81335782 | None:intergenic |
| GCAGTTACACTAGCTTGGGG+GGG | 0.648978 | 6_4:-81335413 | None:intergenic |
| ACAATCCCAACAAGAAAATG+TGG | 0.650677 | 6_4:+81335685 | Msa0999380:CDS |
| GGAGCAGTTACACTAGCTTG+GGG | 0.654666 | 6_4:-81335416 | None:intergenic |
| ACTGGAGGGTACATGAAAGT+GGG | 0.657227 | 6_4:-81335461 | None:intergenic |
| GGAGGGTACATGAAAGTGGG+AGG | 0.681785 | 6_4:-81335458 | None:intergenic |
| AATGTCCTGGATGTACTGGA+GGG | 0.691701 | 6_4:-81335475 | None:intergenic |
| GGTGGGAAATTATAGCTCGG+AGG | 0.700859 | 6_4:-81335527 | None:intergenic |
| GATGCAACCCAGATGAATGG+TGG | 0.722050 | 6_4:+81335719 | Msa0999380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTGCTCTTTCCTTTATTTTT+CGG | - | chr6_4:81335280-81335299 | None:intergenic | 30.0% |
| GAAAAATAAAGGAAAGAGCA+GGG | + | chr6_4:81335279-81335298 | Msa0999380:CDS | 30.0% | |
| AAAAATAAAGGAAAGAGCAG+GGG | + | chr6_4:81335280-81335299 | Msa0999380:CDS | 30.0% | |
| ATTATAGCAGTTGTGAATGA+TGG | - | chr6_4:81335967-81335986 | None:intergenic | 30.0% | |
| ! | ACAACTGCTATAATCACTTT+TGG | + | chr6_4:81335973-81335992 | Msa0999380:CDS | 30.0% |
| !! | AATCACTTTTGGAAGACATA+TGG | + | chr6_4:81335984-81336003 | Msa0999380:CDS | 30.0% |
| !!! | CTGCTCTTTCCTTTATTTTT+CGG | - | chr6_4:81335280-81335299 | None:intergenic | 30.0% |
| GAAAAATAAAGGAAAGAGCA+GGG | + | chr6_4:81335279-81335298 | Msa0999380:CDS | 30.0% | |
| AAAAATAAAGGAAAGAGCAG+GGG | + | chr6_4:81335280-81335299 | Msa0999380:CDS | 30.0% | |
| ATTATAGCAGTTGTGAATGA+TGG | - | chr6_4:81335967-81335986 | None:intergenic | 30.0% | |
| ! | ACAACTGCTATAATCACTTT+TGG | + | chr6_4:81335973-81335992 | Msa0999380:CDS | 30.0% |
| !! | AATCACTTTTGGAAGACATA+TGG | + | chr6_4:81335984-81336003 | Msa0999380:CDS | 30.0% |
| !!! | CTCTTTCCTTTATTTTTCGG+AGG | - | chr6_4:81335277-81335296 | None:intergenic | 35.0% |
| CGAAAAATAAAGGAAAGAGC+AGG | + | chr6_4:81335278-81335297 | Msa0999380:CDS | 35.0% | |
| GAAGATGCAGTAAAAATGAC+AGG | - | chr6_4:81335373-81335392 | None:intergenic | 35.0% | |
| ! | TATGGTGGGAAATTATAGCT+CGG | - | chr6_4:81335533-81335552 | None:intergenic | 35.0% |
| !! | ATTTGTTGTTGTTGGGGAAA+GGG | - | chr6_4:81335578-81335597 | None:intergenic | 35.0% |
| !!! | TTTTGTTGTTGTTGGGGAAA+GGG | - | chr6_4:81335659-81335678 | None:intergenic | 35.0% |
| !!! | ATTTTGTTGTTGTTGGGGAA+AGG | - | chr6_4:81335660-81335679 | None:intergenic | 35.0% |
| !!! | TGGTGGATTTTGTTGTTGTT+GGG | - | chr6_4:81335666-81335685 | None:intergenic | 35.0% |
| ! | ACATTTTCTTGTTGGGATTG+TGG | - | chr6_4:81335686-81335705 | None:intergenic | 35.0% |
| ACAATCCCAACAAGAAAATG+TGG | + | chr6_4:81335685-81335704 | Msa0999380:CDS | 35.0% | |
| ! | TTCGACCACATTTTCTTGTT+GGG | - | chr6_4:81335693-81335712 | None:intergenic | 35.0% |
| TATACTTACGAGTTTCCACT+AGG | - | chr6_4:81335818-81335837 | None:intergenic | 35.0% | |
| !! | TTTTGGAAGACATATGGTGA+TGG | + | chr6_4:81335990-81336009 | Msa0999380:CDS | 35.0% |
| !!! | CTCTTTCCTTTATTTTTCGG+AGG | - | chr6_4:81335277-81335296 | None:intergenic | 35.0% |
| CGAAAAATAAAGGAAAGAGC+AGG | + | chr6_4:81335278-81335297 | Msa0999380:CDS | 35.0% | |
| GAAGATGCAGTAAAAATGAC+AGG | - | chr6_4:81335373-81335392 | None:intergenic | 35.0% | |
| ! | TATGGTGGGAAATTATAGCT+CGG | - | chr6_4:81335533-81335552 | None:intergenic | 35.0% |
| !! | ATTTGTTGTTGTTGGGGAAA+GGG | - | chr6_4:81335578-81335597 | None:intergenic | 35.0% |
| !!! | TTTTGTTGTTGTTGGGGAAA+GGG | - | chr6_4:81335659-81335678 | None:intergenic | 35.0% |
| !!! | ATTTTGTTGTTGTTGGGGAA+AGG | - | chr6_4:81335660-81335679 | None:intergenic | 35.0% |
| !!! | TGGTGGATTTTGTTGTTGTT+GGG | - | chr6_4:81335666-81335685 | None:intergenic | 35.0% |
| ! | ACATTTTCTTGTTGGGATTG+TGG | - | chr6_4:81335686-81335705 | None:intergenic | 35.0% |
| ACAATCCCAACAAGAAAATG+TGG | + | chr6_4:81335685-81335704 | Msa0999380:CDS | 35.0% | |
| ! | TTCGACCACATTTTCTTGTT+GGG | - | chr6_4:81335693-81335712 | None:intergenic | 35.0% |
| TATACTTACGAGTTTCCACT+AGG | - | chr6_4:81335818-81335837 | None:intergenic | 35.0% | |
| !! | TTTTGGAAGACATATGGTGA+TGG | + | chr6_4:81335990-81336009 | Msa0999380:CDS | 35.0% |
| CAGTAAAAATGACAGGCATG+GGG | - | chr6_4:81335366-81335385 | None:intergenic | 40.0% | |
| GCAGTAAAAATGACAGGCAT+GGG | - | chr6_4:81335367-81335386 | None:intergenic | 40.0% | |
| TGCAGTAAAAATGACAGGCA+TGG | - | chr6_4:81335368-81335387 | None:intergenic | 40.0% | |
| ! | TTTTACTGCATCTTCTAGCC+AGG | + | chr6_4:81335378-81335397 | Msa0999380:intron | 40.0% |
| TTTACTGCATCTTCTAGCCA+GGG | + | chr6_4:81335379-81335398 | Msa0999380:intron | 40.0% | |
| !! | TTTTGTGGTGGGACTGAATA+TGG | - | chr6_4:81335551-81335570 | None:intergenic | 40.0% |
| !! | GATTTGTTGTTGTTGGGGAA+AGG | - | chr6_4:81335579-81335598 | None:intergenic | 40.0% |
| !! | TGGAGGGATTTGTTGTTGTT+GGG | - | chr6_4:81335585-81335604 | None:intergenic | 40.0% |
| !! | TTTGTTGTTGGGGAAAGGAT+GGG | - | chr6_4:81335616-81335635 | None:intergenic | 40.0% |
| !! | ATTTGTTGTTGGGGAAAGGA+TGG | - | chr6_4:81335617-81335636 | None:intergenic | 40.0% |
| !! | TTGTGGAGGGATTTGTTGTT+GGG | - | chr6_4:81335588-81335607 | None:intergenic | 40.0% |
| !!! | GGTGGATTTTGTTGTTGTTG+GGG | - | chr6_4:81335665-81335684 | None:intergenic | 40.0% |
| !!! | GTGGTGGATTTTGTTGTTGT+TGG | - | chr6_4:81335667-81335686 | None:intergenic | 40.0% |
| ! | TTTTCTTGTTGGGATTGTGG+TGG | - | chr6_4:81335683-81335702 | None:intergenic | 40.0% |
| ! | CTTCGACCACATTTTCTTGT+TGG | - | chr6_4:81335694-81335713 | None:intergenic | 40.0% |
| ACAAGAAAATGTGGTCGAAG+AGG | + | chr6_4:81335694-81335713 | Msa0999380:CDS | 40.0% | |
| AATCGATCACGAGAATCTGT+CGG | - | chr6_4:81335785-81335804 | None:intergenic | 40.0% | |
| CGATTCATCTTAAAGCCTAG+TGG | + | chr6_4:81335800-81335819 | Msa0999380:CDS | 40.0% | |
| CAGTAAAAATGACAGGCATG+GGG | - | chr6_4:81335366-81335385 | None:intergenic | 40.0% | |
| GCAGTAAAAATGACAGGCAT+GGG | - | chr6_4:81335367-81335386 | None:intergenic | 40.0% | |
| TGCAGTAAAAATGACAGGCA+TGG | - | chr6_4:81335368-81335387 | None:intergenic | 40.0% | |
| ! | TTTTACTGCATCTTCTAGCC+AGG | + | chr6_4:81335378-81335397 | Msa0999380:intron | 40.0% |
| TTTACTGCATCTTCTAGCCA+GGG | + | chr6_4:81335379-81335398 | Msa0999380:intron | 40.0% | |
| !! | TTTTGTGGTGGGACTGAATA+TGG | - | chr6_4:81335551-81335570 | None:intergenic | 40.0% |
| !! | GATTTGTTGTTGTTGGGGAA+AGG | - | chr6_4:81335579-81335598 | None:intergenic | 40.0% |
| !! | TGGAGGGATTTGTTGTTGTT+GGG | - | chr6_4:81335585-81335604 | None:intergenic | 40.0% |
| !! | TTTGTTGTTGGGGAAAGGAT+GGG | - | chr6_4:81335616-81335635 | None:intergenic | 40.0% |
| !! | ATTTGTTGTTGGGGAAAGGA+TGG | - | chr6_4:81335617-81335636 | None:intergenic | 40.0% |
| !! | TTGTGGAGGGATTTGTTGTT+GGG | - | chr6_4:81335588-81335607 | None:intergenic | 40.0% |
| !!! | GGTGGATTTTGTTGTTGTTG+GGG | - | chr6_4:81335665-81335684 | None:intergenic | 40.0% |
| !!! | GTGGTGGATTTTGTTGTTGT+TGG | - | chr6_4:81335667-81335686 | None:intergenic | 40.0% |
| ! | TTTTCTTGTTGGGATTGTGG+TGG | - | chr6_4:81335683-81335702 | None:intergenic | 40.0% |
| ! | CTTCGACCACATTTTCTTGT+TGG | - | chr6_4:81335694-81335713 | None:intergenic | 40.0% |
| ACAAGAAAATGTGGTCGAAG+AGG | + | chr6_4:81335694-81335713 | Msa0999380:CDS | 40.0% | |
| AATCGATCACGAGAATCTGT+CGG | - | chr6_4:81335785-81335804 | None:intergenic | 40.0% | |
| CGATTCATCTTAAAGCCTAG+TGG | + | chr6_4:81335800-81335819 | Msa0999380:CDS | 40.0% | |
| ! | AGGAGCAGTTACACTAGCTT+GGG | - | chr6_4:81335420-81335439 | None:intergenic | 45.0% |
| TAGTGTAACTGCTCCTGCTA+TGG | + | chr6_4:81335424-81335443 | Msa0999380:CDS | 45.0% | |
| AGTGTAACTGCTCCTGCTAT+GGG | + | chr6_4:81335425-81335444 | Msa0999380:CDS | 45.0% | |
| ! | ACTGGAGGGTACATGAAAGT+GGG | - | chr6_4:81335464-81335483 | None:intergenic | 45.0% |
| ! | TACTGGAGGGTACATGAAAG+TGG | - | chr6_4:81335465-81335484 | None:intergenic | 45.0% |
| AATGTCCTGGATGTACTGGA+GGG | - | chr6_4:81335478-81335497 | None:intergenic | 45.0% | |
| TAATGTCCTGGATGTACTGG+AGG | - | chr6_4:81335479-81335498 | None:intergenic | 45.0% | |
| CCATAATGTCCTGGATGTAC+TGG | - | chr6_4:81335482-81335501 | None:intergenic | 45.0% | |
| CCAGTACATCCAGGACATTA+TGG | + | chr6_4:81335479-81335498 | Msa0999380:CDS | 45.0% | |
| !! | GATATGGTGCCATAATGTCC+TGG | - | chr6_4:81335491-81335510 | None:intergenic | 45.0% |
| TATGGCACCATATCTCCTTC+TGG | + | chr6_4:81335497-81335516 | Msa0999380:CDS | 45.0% | |
| ATGGCACCATATCTCCTTCT+GGG | + | chr6_4:81335498-81335517 | Msa0999380:CDS | 45.0% | |
| GAAATTATAGCTCGGAGGGA+AGG | - | chr6_4:81335525-81335544 | None:intergenic | 45.0% | |
| GTGGGAAATTATAGCTCGGA+GGG | - | chr6_4:81335529-81335548 | None:intergenic | 45.0% | |
| !! | GAAAGGGAAGGTTTTGTGGT+GGG | - | chr6_4:81335562-81335581 | None:intergenic | 45.0% |
| !! | GGAGGGATTTGTTGTTGTTG+GGG | - | chr6_4:81335584-81335603 | None:intergenic | 45.0% |
| !! | GTGGAGGGATTTGTTGTTGT+TGG | - | chr6_4:81335586-81335605 | None:intergenic | 45.0% |
| !!! | AGGATGGGTTTTGTTGTGGA+GGG | - | chr6_4:81335601-81335620 | None:intergenic | 45.0% |
| !!! | AAGGATGGGTTTTGTTGTGG+AGG | - | chr6_4:81335602-81335621 | None:intergenic | 45.0% |
| !!! | GGAAAGGATGGGTTTTGTTG+TGG | - | chr6_4:81335605-81335624 | None:intergenic | 45.0% |
| !! | AGGGATTTGTTGTTGGGGAA+AGG | - | chr6_4:81335621-81335640 | None:intergenic | 45.0% |
| !! | TGTGGAGGGATTTGTTGTTG+GGG | - | chr6_4:81335587-81335606 | None:intergenic | 45.0% |
| !! | GTTGTGGAGGGATTTGTTGT+TGG | - | chr6_4:81335589-81335608 | None:intergenic | 45.0% |
| GATGATGCAACCCAGATGAA+TGG | + | chr6_4:81335716-81335735 | Msa0999380:CDS | 45.0% | |
| TCCAGGAAAACATCATCAGC+CGG | - | chr6_4:81335758-81335777 | None:intergenic | 45.0% | |
| GAGAATCTGTCGGATAATCC+AGG | - | chr6_4:81335775-81335794 | None:intergenic | 45.0% | |
| ! | CAGCTTTTTGCCTTGCAAAC+CGG | + | chr6_4:81335923-81335942 | Msa0999380:intron | 45.0% |
| ! | AGGAGCAGTTACACTAGCTT+GGG | - | chr6_4:81335420-81335439 | None:intergenic | 45.0% |
| TAGTGTAACTGCTCCTGCTA+TGG | + | chr6_4:81335424-81335443 | Msa0999380:CDS | 45.0% | |
| AGTGTAACTGCTCCTGCTAT+GGG | + | chr6_4:81335425-81335444 | Msa0999380:CDS | 45.0% | |
| ! | ACTGGAGGGTACATGAAAGT+GGG | - | chr6_4:81335464-81335483 | None:intergenic | 45.0% |
| ! | TACTGGAGGGTACATGAAAG+TGG | - | chr6_4:81335465-81335484 | None:intergenic | 45.0% |
| AATGTCCTGGATGTACTGGA+GGG | - | chr6_4:81335478-81335497 | None:intergenic | 45.0% | |
| TAATGTCCTGGATGTACTGG+AGG | - | chr6_4:81335479-81335498 | None:intergenic | 45.0% | |
| CCATAATGTCCTGGATGTAC+TGG | - | chr6_4:81335482-81335501 | None:intergenic | 45.0% | |
| CCAGTACATCCAGGACATTA+TGG | + | chr6_4:81335479-81335498 | Msa0999380:CDS | 45.0% | |
| !! | GATATGGTGCCATAATGTCC+TGG | - | chr6_4:81335491-81335510 | None:intergenic | 45.0% |
| TATGGCACCATATCTCCTTC+TGG | + | chr6_4:81335497-81335516 | Msa0999380:CDS | 45.0% | |
| ATGGCACCATATCTCCTTCT+GGG | + | chr6_4:81335498-81335517 | Msa0999380:CDS | 45.0% | |
| GAAATTATAGCTCGGAGGGA+AGG | - | chr6_4:81335525-81335544 | None:intergenic | 45.0% | |
| GTGGGAAATTATAGCTCGGA+GGG | - | chr6_4:81335529-81335548 | None:intergenic | 45.0% | |
| !! | GAAAGGGAAGGTTTTGTGGT+GGG | - | chr6_4:81335562-81335581 | None:intergenic | 45.0% |
| !! | GGAGGGATTTGTTGTTGTTG+GGG | - | chr6_4:81335584-81335603 | None:intergenic | 45.0% |
| !! | GTGGAGGGATTTGTTGTTGT+TGG | - | chr6_4:81335586-81335605 | None:intergenic | 45.0% |
| !!! | AGGATGGGTTTTGTTGTGGA+GGG | - | chr6_4:81335601-81335620 | None:intergenic | 45.0% |
| !!! | AAGGATGGGTTTTGTTGTGG+AGG | - | chr6_4:81335602-81335621 | None:intergenic | 45.0% |
| !!! | GGAAAGGATGGGTTTTGTTG+TGG | - | chr6_4:81335605-81335624 | None:intergenic | 45.0% |
| !! | AGGGATTTGTTGTTGGGGAA+AGG | - | chr6_4:81335621-81335640 | None:intergenic | 45.0% |
| !! | TGTGGAGGGATTTGTTGTTG+GGG | - | chr6_4:81335587-81335606 | None:intergenic | 45.0% |
| !! | GTTGTGGAGGGATTTGTTGT+TGG | - | chr6_4:81335589-81335608 | None:intergenic | 45.0% |
| GATGATGCAACCCAGATGAA+TGG | + | chr6_4:81335716-81335735 | Msa0999380:CDS | 45.0% | |
| TCCAGGAAAACATCATCAGC+CGG | - | chr6_4:81335758-81335777 | None:intergenic | 45.0% | |
| GAGAATCTGTCGGATAATCC+AGG | - | chr6_4:81335775-81335794 | None:intergenic | 45.0% | |
| ! | CAGCTTTTTGCCTTGCAAAC+CGG | + | chr6_4:81335923-81335942 | Msa0999380:intron | 45.0% |
| GGCAACAACAGAAGGCTGTA+TGG | + | chr6_4:81335301-81335320 | Msa0999380:intron | 50.0% | |
| GCTGTATGGTACTCACGTTG+TGG | + | chr6_4:81335315-81335334 | Msa0999380:intron | 50.0% | |
| TCTTCTAGCCAGGGATCATC+TGG | + | chr6_4:81335388-81335407 | Msa0999380:intron | 50.0% | |
| CTTCTAGCCAGGGATCATCT+GGG | + | chr6_4:81335389-81335408 | Msa0999380:intron | 50.0% | |
| ! | AGCAGTTACACTAGCTTGGG+GGG | - | chr6_4:81335417-81335436 | None:intergenic | 50.0% |
| ! | GAGCAGTTACACTAGCTTGG+GGG | - | chr6_4:81335418-81335437 | None:intergenic | 50.0% |
| ! | GGAGCAGTTACACTAGCTTG+GGG | - | chr6_4:81335419-81335438 | None:intergenic | 50.0% |
| CAGGAGCAGTTACACTAGCT+TGG | - | chr6_4:81335421-81335440 | None:intergenic | 50.0% | |
| ATGTACCCTCCAGTACATCC+AGG | + | chr6_4:81335470-81335489 | Msa0999380:CDS | 50.0% | |
| GAAGGTCCCAGAAGGAGATA+TGG | - | chr6_4:81335507-81335526 | None:intergenic | 50.0% | |
| GGTGGGAAATTATAGCTCGG+AGG | - | chr6_4:81335530-81335549 | None:intergenic | 50.0% | |
| ! | GTGGTGGGACTGAATATGGT+GGG | - | chr6_4:81335547-81335566 | None:intergenic | 50.0% |
| ! | TGTGGTGGGACTGAATATGG+TGG | - | chr6_4:81335548-81335567 | None:intergenic | 50.0% |
| !! | GGAAAGGGAAGGTTTTGTGG+TGG | - | chr6_4:81335563-81335582 | None:intergenic | 50.0% |
| ! | TGGGGAAAGGGAAGGTTTTG+TGG | - | chr6_4:81335566-81335585 | None:intergenic | 50.0% |
| ! | GTTGTTGTTGGGGAAAGGGA+AGG | - | chr6_4:81335574-81335593 | None:intergenic | 50.0% |
| !!! | AGGGTGGGTTTTGTTGTGGA+GGG | - | chr6_4:81335640-81335659 | None:intergenic | 50.0% |
| !!! | AAGGGTGGGTTTTGTTGTGG+AGG | - | chr6_4:81335641-81335660 | None:intergenic | 50.0% |
| !!! | GGAAAGGGTGGGTTTTGTTG+TGG | - | chr6_4:81335644-81335663 | None:intergenic | 50.0% |
| ! | GTTGTTGTTGGGGAAAGGGT+GGG | - | chr6_4:81335655-81335674 | None:intergenic | 50.0% |
| ! | TGTTGTTGTTGGGGAAAGGG+TGG | - | chr6_4:81335575-81335594 | None:intergenic | 50.0% |
| GATGCAACCCAGATGAATGG+TGG | + | chr6_4:81335719-81335738 | Msa0999380:CDS | 50.0% | |
| CTCTCCACCACCATTCATCT+GGG | - | chr6_4:81335729-81335748 | None:intergenic | 50.0% | |
| ! | CTTTTTGCCTTGCAAACCGG+CGG | + | chr6_4:81335926-81335945 | Msa0999380:CDS | 50.0% |
| !! | AAGACATATGGTGATGGCGC+TGG | + | chr6_4:81335996-81336015 | Msa0999380:CDS | 50.0% |
| !! | TATGGTGATGGCGCTGGTTT+AGG | + | chr6_4:81336002-81336021 | Msa0999380:CDS | 50.0% |
| GGCAACAACAGAAGGCTGTA+TGG | + | chr6_4:81335301-81335320 | Msa0999380:intron | 50.0% | |
| GCTGTATGGTACTCACGTTG+TGG | + | chr6_4:81335315-81335334 | Msa0999380:intron | 50.0% | |
| TCTTCTAGCCAGGGATCATC+TGG | + | chr6_4:81335388-81335407 | Msa0999380:intron | 50.0% | |
| CTTCTAGCCAGGGATCATCT+GGG | + | chr6_4:81335389-81335408 | Msa0999380:intron | 50.0% | |
| ! | AGCAGTTACACTAGCTTGGG+GGG | - | chr6_4:81335417-81335436 | None:intergenic | 50.0% |
| ! | GAGCAGTTACACTAGCTTGG+GGG | - | chr6_4:81335418-81335437 | None:intergenic | 50.0% |
| ! | GGAGCAGTTACACTAGCTTG+GGG | - | chr6_4:81335419-81335438 | None:intergenic | 50.0% |
| CAGGAGCAGTTACACTAGCT+TGG | - | chr6_4:81335421-81335440 | None:intergenic | 50.0% | |
| ATGTACCCTCCAGTACATCC+AGG | + | chr6_4:81335470-81335489 | Msa0999380:CDS | 50.0% | |
| GAAGGTCCCAGAAGGAGATA+TGG | - | chr6_4:81335507-81335526 | None:intergenic | 50.0% | |
| GGTGGGAAATTATAGCTCGG+AGG | - | chr6_4:81335530-81335549 | None:intergenic | 50.0% | |
| ! | GTGGTGGGACTGAATATGGT+GGG | - | chr6_4:81335547-81335566 | None:intergenic | 50.0% |
| ! | TGTGGTGGGACTGAATATGG+TGG | - | chr6_4:81335548-81335567 | None:intergenic | 50.0% |
| !! | GGAAAGGGAAGGTTTTGTGG+TGG | - | chr6_4:81335563-81335582 | None:intergenic | 50.0% |
| ! | TGGGGAAAGGGAAGGTTTTG+TGG | - | chr6_4:81335566-81335585 | None:intergenic | 50.0% |
| ! | GTTGTTGTTGGGGAAAGGGA+AGG | - | chr6_4:81335574-81335593 | None:intergenic | 50.0% |
| !!! | AGGGTGGGTTTTGTTGTGGA+GGG | - | chr6_4:81335640-81335659 | None:intergenic | 50.0% |
| !!! | AAGGGTGGGTTTTGTTGTGG+AGG | - | chr6_4:81335641-81335660 | None:intergenic | 50.0% |
| !!! | GGAAAGGGTGGGTTTTGTTG+TGG | - | chr6_4:81335644-81335663 | None:intergenic | 50.0% |
| ! | GTTGTTGTTGGGGAAAGGGT+GGG | - | chr6_4:81335655-81335674 | None:intergenic | 50.0% |
| ! | TGTTGTTGTTGGGGAAAGGG+TGG | - | chr6_4:81335575-81335594 | None:intergenic | 50.0% |
| GATGCAACCCAGATGAATGG+TGG | + | chr6_4:81335719-81335738 | Msa0999380:CDS | 50.0% | |
| CTCTCCACCACCATTCATCT+GGG | - | chr6_4:81335729-81335748 | None:intergenic | 50.0% | |
| ! | CTTTTTGCCTTGCAAACCGG+CGG | + | chr6_4:81335926-81335945 | Msa0999380:CDS | 50.0% |
| !! | AAGACATATGGTGATGGCGC+TGG | + | chr6_4:81335996-81336015 | Msa0999380:CDS | 50.0% |
| !! | TATGGTGATGGCGCTGGTTT+AGG | + | chr6_4:81336002-81336021 | Msa0999380:CDS | 50.0% |
| AGAGCAGGGGCAACAACAGA+AGG | + | chr6_4:81335293-81335312 | Msa0999380:CDS | 55.0% | |
| ! | GCAGTTACACTAGCTTGGGG+GGG | - | chr6_4:81335416-81335435 | None:intergenic | 55.0% |
| GGGTACATGAAAGTGGGAGG+AGG | - | chr6_4:81335458-81335477 | None:intergenic | 55.0% | |
| ! | GGAGGGTACATGAAAGTGGG+AGG | - | chr6_4:81335461-81335480 | None:intergenic | 55.0% |
| GCAACCCAGATGAATGGTGG+TGG | + | chr6_4:81335722-81335741 | Msa0999380:CDS | 55.0% | |
| GCTCTCCACCACCATTCATC+TGG | - | chr6_4:81335730-81335749 | None:intergenic | 55.0% | |
| !! | GATGAATGGTGGTGGAGAGC+TGG | + | chr6_4:81335730-81335749 | Msa0999380:CDS | 55.0% |
| !! | GCCGGCTGATGATGTTTTCC+TGG | + | chr6_4:81335754-81335773 | Msa0999380:CDS | 55.0% |
| ! | GCTTTGATAGCTTCAGCCGC+CGG | - | chr6_4:81335945-81335964 | None:intergenic | 55.0% |
| !! | GCGCTGGTTTAGGCTCTTTG+AGG | + | chr6_4:81336012-81336031 | Msa0999380:CDS | 55.0% |
| AGAGCAGGGGCAACAACAGA+AGG | + | chr6_4:81335293-81335312 | Msa0999380:CDS | 55.0% | |
| ! | GCAGTTACACTAGCTTGGGG+GGG | - | chr6_4:81335416-81335435 | None:intergenic | 55.0% |
| GGGTACATGAAAGTGGGAGG+AGG | - | chr6_4:81335458-81335477 | None:intergenic | 55.0% | |
| ! | GGAGGGTACATGAAAGTGGG+AGG | - | chr6_4:81335461-81335480 | None:intergenic | 55.0% |
| GCAACCCAGATGAATGGTGG+TGG | + | chr6_4:81335722-81335741 | Msa0999380:CDS | 55.0% | |
| GCTCTCCACCACCATTCATC+TGG | - | chr6_4:81335730-81335749 | None:intergenic | 55.0% | |
| !! | GATGAATGGTGGTGGAGAGC+TGG | + | chr6_4:81335730-81335749 | Msa0999380:CDS | 55.0% |
| !! | GCCGGCTGATGATGTTTTCC+TGG | + | chr6_4:81335754-81335773 | Msa0999380:CDS | 55.0% |
| ! | GCTTTGATAGCTTCAGCCGC+CGG | - | chr6_4:81335945-81335964 | None:intergenic | 55.0% |
| !! | GCGCTGGTTTAGGCTCTTTG+AGG | + | chr6_4:81336012-81336031 | Msa0999380:CDS | 55.0% |
| GGAGGAGCAGAACCCATAGC+AGG | - | chr6_4:81335440-81335459 | None:intergenic | 60.0% | |
| GGAGGAGCAGAACCCATAGC+AGG | - | chr6_4:81335440-81335459 | None:intergenic | 60.0% | |
| CTCGGAGGGAAGGTCCCAGA+AGG | - | chr6_4:81335515-81335534 | None:intergenic | 65.0% | |
| !! | TGGTGGTGGAGAGCTGGTGC+CGG | + | chr6_4:81335736-81335755 | Msa0999380:CDS | 65.0% |
| !! | GCTTCAGCCGCCGGTTTGCA+AGG | - | chr6_4:81335936-81335955 | None:intergenic | 65.0% |
| CTCGGAGGGAAGGTCCCAGA+AGG | - | chr6_4:81335515-81335534 | None:intergenic | 65.0% | |
| !! | TGGTGGTGGAGAGCTGGTGC+CGG | + | chr6_4:81335736-81335755 | Msa0999380:CDS | 65.0% |
| !! | GCTTCAGCCGCCGGTTTGCA+AGG | - | chr6_4:81335936-81335955 | None:intergenic | 65.0% |
| GGGGGGACCCAGATGATCCC+TGG | - | chr6_4:81335399-81335418 | None:intergenic | 70.0% | |
| GGGGGGACCCAGATGATCCC+TGG | - | chr6_4:81335399-81335418 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 81335271 | 81336070 | 81335271 | ID=Msa0999380;Name=Msa0999380 |
| chr6_4 | mRNA | 81335271 | 81336070 | 81335271 | ID=Msa0999380-mRNA-1;Parent=Msa0999380;Name=Msa0999380-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.5|0|1|0.5|0.33|3|0|206 |
| chr6_4 | exon | 81335271 | 81335317 | 81335271 | ID=Msa0999380-mRNA-1:exon:15531;Parent=Msa0999380-mRNA-1 |
| chr6_4 | exon | 81335400 | 81335828 | 81335400 | ID=Msa0999380-mRNA-1:exon:15532;Parent=Msa0999380-mRNA-1 |
| chr6_4 | exon | 81335926 | 81336070 | 81335926 | ID=Msa0999380-mRNA-1:exon:15533;Parent=Msa0999380-mRNA-1 |
| chr6_4 | CDS | 81335271 | 81335317 | 81335271 | ID=Msa0999380-mRNA-1:cds;Parent=Msa0999380-mRNA-1 |
| chr6_4 | CDS | 81335400 | 81335828 | 81335400 | ID=Msa0999380-mRNA-1:cds;Parent=Msa0999380-mRNA-1 |
| chr6_4 | CDS | 81335926 | 81336070 | 81335926 | ID=Msa0999380-mRNA-1:cds;Parent=Msa0999380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
