Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1003020 | XP_013469132.1 | 95.652 | 414 | 9 | 3 | 1 | 414 | 1 | 405 | 0.0 | 812 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1003020 | sp|F4I839|PAE2_ARATH | 63.333 | 420 | 144 | 2 | 2 | 413 | 27 | 444 | 0.0 | 574 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1003020 | A0A072VYL4 | 95.652 | 414 | 9 | 3 | 1 | 414 | 1 | 405 | 0.0 | 812 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0081350 | Msa1003020 | 0.916041 | 2.867578e-85 | -8.615850e-47 |
| Msa0081490 | Msa1003020 | 0.967025 | 1.034562e-126 | -8.615850e-47 |
| Msa0173650 | Msa1003020 | 0.902047 | 1.444064e-78 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1003020 | MtrunA17_Chr1g0193761 | 95.652 | 414 | 9 | 3 | 1 | 414 | 1 | 405 | 0.0 | 812 |
| Msa1003020 | MtrunA17_Chr7g0270931 | 73.671 | 414 | 103 | 2 | 2 | 411 | 3 | 414 | 0.0 | 654 |
| Msa1003020 | MtrunA17_Chr1g0193381 | 68.123 | 389 | 122 | 1 | 26 | 412 | 28 | 416 | 0.0 | 587 |
| Msa1003020 | MtrunA17_Chr7g0271231 | 71.311 | 366 | 105 | 0 | 46 | 411 | 53 | 418 | 0.0 | 581 |
| Msa1003020 | MtrunA17_Chr4g0069571 | 63.007 | 419 | 140 | 4 | 1 | 411 | 9 | 420 | 0.0 | 553 |
| Msa1003020 | MtrunA17_Chr5g0408881 | 53.867 | 362 | 165 | 1 | 49 | 408 | 29 | 390 | 5.38e-153 | 440 |
| Msa1003020 | MtrunA17_Chr7g0238491 | 50.000 | 406 | 192 | 4 | 15 | 414 | 28 | 428 | 1.19e-147 | 426 |
| Msa1003020 | MtrunA17_Chr8g0369681 | 49.730 | 370 | 184 | 1 | 45 | 412 | 23 | 392 | 2.42e-146 | 422 |
| Msa1003020 | MtrunA17_Chr8g0369651 | 49.589 | 365 | 182 | 1 | 49 | 411 | 28 | 392 | 4.77e-146 | 420 |
| Msa1003020 | MtrunA17_Chr1g0203101 | 54.768 | 367 | 161 | 3 | 49 | 410 | 39 | 405 | 5.92e-146 | 421 |
| Msa1003020 | MtrunA17_Chr1g0203121 | 54.223 | 367 | 163 | 3 | 49 | 410 | 39 | 405 | 7.61e-143 | 413 |
| Msa1003020 | MtrunA17_Chr5g0418101 | 49.041 | 365 | 180 | 2 | 48 | 410 | 41 | 401 | 1.37e-135 | 394 |
| Msa1003020 | MtrunA17_Chr1g0163701 | 49.515 | 103 | 52 | 0 | 229 | 331 | 270 | 372 | 6.99e-28 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1003020 | AT1G57590.1 | 63.333 | 420 | 144 | 2 | 2 | 413 | 27 | 444 | 0.0 | 574 |
| Msa1003020 | AT5G26670.1 | 63.876 | 418 | 134 | 2 | 7 | 412 | 4 | 416 | 0.0 | 567 |
| Msa1003020 | AT3G62060.2 | 63.981 | 422 | 135 | 5 | 3 | 411 | 1 | 418 | 0.0 | 566 |
| Msa1003020 | AT3G05910.1 | 68.733 | 371 | 115 | 1 | 42 | 412 | 46 | 415 | 0.0 | 566 |
| Msa1003020 | AT3G62060.1 | 63.981 | 422 | 135 | 5 | 3 | 411 | 1 | 418 | 0.0 | 565 |
| Msa1003020 | AT2G46930.1 | 63.549 | 417 | 144 | 3 | 3 | 412 | 1 | 416 | 0.0 | 560 |
| Msa1003020 | AT4G19420.1 | 56.438 | 365 | 157 | 1 | 49 | 411 | 25 | 389 | 5.89e-161 | 459 |
| Msa1003020 | AT4G19420.2 | 56.438 | 365 | 157 | 1 | 49 | 411 | 25 | 389 | 5.89e-161 | 459 |
| Msa1003020 | AT5G26670.3 | 66.779 | 298 | 99 | 0 | 115 | 412 | 1 | 298 | 3.46e-157 | 445 |
| Msa1003020 | AT5G26670.2 | 66.779 | 298 | 99 | 0 | 115 | 412 | 1 | 298 | 3.46e-157 | 445 |
| Msa1003020 | AT5G26670.4 | 66.779 | 298 | 99 | 0 | 115 | 412 | 1 | 298 | 3.46e-157 | 445 |
| Msa1003020 | AT4G19420.4 | 51.750 | 400 | 156 | 2 | 49 | 411 | 25 | 424 | 6.61e-154 | 442 |
| Msa1003020 | AT5G23870.2 | 55.163 | 368 | 159 | 4 | 49 | 410 | 35 | 402 | 9.73e-154 | 442 |
| Msa1003020 | AT5G23870.1 | 55.163 | 368 | 159 | 4 | 49 | 410 | 35 | 402 | 9.86e-154 | 441 |
| Msa1003020 | AT5G23870.4 | 55.163 | 368 | 159 | 4 | 49 | 410 | 35 | 402 | 9.86e-154 | 441 |
| Msa1003020 | AT5G23870.3 | 55.163 | 368 | 159 | 4 | 49 | 410 | 35 | 402 | 1.18e-153 | 442 |
| Msa1003020 | AT1G09550.1 | 55.000 | 360 | 157 | 3 | 31 | 390 | 28 | 382 | 7.16e-150 | 430 |
| Msa1003020 | AT3G09410.1 | 50.000 | 400 | 193 | 2 | 15 | 411 | 31 | 426 | 7.74e-149 | 429 |
| Msa1003020 | AT3G05910.2 | 68.582 | 261 | 81 | 1 | 43 | 303 | 47 | 306 | 3.07e-136 | 393 |
| Msa1003020 | AT3G09405.1 | 48.294 | 381 | 191 | 3 | 29 | 406 | 32 | 409 | 3.65e-136 | 396 |
| Msa1003020 | AT4G19410.1 | 47.645 | 361 | 186 | 2 | 49 | 406 | 24 | 384 | 7.03e-135 | 392 |
| Msa1003020 | AT5G45280.2 | 46.814 | 361 | 189 | 2 | 49 | 406 | 24 | 384 | 9.66e-133 | 387 |
| Msa1003020 | AT3G09410.3 | 48.634 | 366 | 181 | 2 | 15 | 377 | 31 | 392 | 1.70e-129 | 379 |
| Msa1003020 | AT4G19410.2 | 47.965 | 344 | 177 | 1 | 49 | 390 | 24 | 367 | 4.17e-128 | 379 |
| Msa1003020 | AT3G09405.2 | 48.845 | 303 | 150 | 2 | 107 | 406 | 2 | 302 | 2.63e-109 | 324 |
| Msa1003020 | AT5G45280.1 | 49.474 | 285 | 142 | 1 | 49 | 331 | 24 | 308 | 9.47e-109 | 325 |
| Msa1003020 | AT4G19420.3 | 59.817 | 219 | 86 | 1 | 49 | 265 | 25 | 243 | 1.00e-93 | 284 |
Find 95 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTTGCATTCTTAGTTTC+TGG | 0.113356 | 6_4:+89835101 | Msa1003020:CDS |
| CTTCCCTCCTTGTATTTGTT+TGG | 0.210251 | 6_4:+89838475 | Msa1003020:three_prime_UTR |
| GAACTCATCACAGTGTATTA+TGG | 0.279288 | 6_4:-89836903 | None:intergenic |
| CATGCACAGATTTCTTTAAC+TGG | 0.280335 | 6_4:+89836413 | Msa1003020:intron |
| AATTTGCATTCTTAGTTTCT+GGG | 0.281723 | 6_4:+89835102 | Msa1003020:CDS |
| AGCTGTCTTTGGGGCTAAAC+TGG | 0.296500 | 6_4:-89837801 | None:intergenic |
| ACTGGAATAGAGTCAAATTA+AGG | 0.300173 | 6_4:+89836431 | Msa1003020:CDS |
| TTCCCTCCTTGTATTTGTTT+GGG | 0.304087 | 6_4:+89838476 | Msa1003020:three_prime_UTR |
| TGGAGGTGTAGTTCAGTTAC+AGG | 0.319230 | 6_4:+89837119 | Msa1003020:CDS |
| GTTTCTGGGTTTATCTCCTC+TGG | 0.329452 | 6_4:+89835116 | Msa1003020:CDS |
| TCTTATCACCACAGTCTGTT+TGG | 0.333070 | 6_4:+89835875 | Msa1003020:intron |
| ATATGAGGTTGCAATGAATT+AGG | 0.345810 | 6_4:-89835185 | None:intergenic |
| AACATTGCCTGGTTACCATT+TGG | 0.363625 | 6_4:+89835902 | Msa1003020:CDS |
| GAGAGAGATACCAGCTCCTT+TGG | 0.363704 | 6_4:-89835240 | None:intergenic |
| CTCTTCTAAACACCAGATTA+TGG | 0.376863 | 6_4:-89838414 | None:intergenic |
| GTATATCAGGCCCTTCTCTC+TGG | 0.378444 | 6_4:+89836857 | Msa1003020:intron |
| TTCTGCATTGAATAGCAAAA+TGG | 0.379784 | 6_4:+89838616 | Msa1003020:three_prime_UTR |
| CTTCTCTCTGGATGCTCTGC+GGG | 0.380263 | 6_4:+89836869 | Msa1003020:CDS |
| CTATTGTGGTGGAAACAAAA+AGG | 0.388388 | 6_4:-89834920 | None:intergenic |
| TTGTGTAGAATTGATATATC+TGG | 0.393324 | 6_4:+89837072 | Msa1003020:intron |
| TTGGATCGTGGATTTGAATC+TGG | 0.394258 | 6_4:+89835921 | Msa1003020:CDS |
| CAATAGCTTTGACAACTTCT+CGG | 0.399277 | 6_4:-89838363 | None:intergenic |
| TGAATGAGAATTACCGAAGT+TGG | 0.402427 | 6_4:-89837481 | None:intergenic |
| TAATTCATTGCAACCTCATA+TGG | 0.405524 | 6_4:+89835187 | Msa1003020:CDS |
| TTGCTCAATATTCCTGTGAA+TGG | 0.409923 | 6_4:-89836234 | None:intergenic |
| TGACAATAGCTGCCATAATC+TGG | 0.419500 | 6_4:+89838402 | Msa1003020:CDS |
| TCTCCAACAGCAACTGCAAT+TGG | 0.422862 | 6_4:-89838328 | None:intergenic |
| CGCACAATGAGGAATATGTT+TGG | 0.429123 | 6_4:+89837099 | Msa1003020:CDS |
| TTCTCAAGATCATCTCAAAC+TGG | 0.432587 | 6_4:+89838087 | Msa1003020:CDS |
| GTGAAGTGTTTAAGTGATGC+AGG | 0.433309 | 6_4:+89836953 | Msa1003020:CDS |
| TTGAATCTGGTGCAAATAGT+TGG | 0.437940 | 6_4:+89835934 | Msa1003020:CDS |
| TCTTTGGGGCTAAACTGGCT+TGG | 0.447959 | 6_4:-89837796 | None:intergenic |
| AAATAGTTGGCTTATTCATC+TGG | 0.452603 | 6_4:+89835947 | Msa1003020:CDS |
| AATATGGCTTGCTGCAATAG+AGG | 0.452909 | 6_4:+89836734 | Msa1003020:CDS |
| CAAACCTTGTCATCAATAAG+AGG | 0.455553 | 6_4:-89838180 | None:intergenic |
| CAGCTATTGTCACAGGGGTA+AGG | 0.457583 | 6_4:-89838391 | None:intergenic |
| CTCTCCTCTTATTGATGACA+AGG | 0.463103 | 6_4:+89838176 | Msa1003020:CDS |
| AGGAATGCAGAATGCCGAAC+AGG | 0.466856 | 6_4:+89836770 | Msa1003020:CDS |
| GTAGACCTCACTCTCATTCA+AGG | 0.469696 | 6_4:+89835209 | Msa1003020:CDS |
| GAATGAGAATTACCGAAGTT+GGG | 0.474842 | 6_4:-89837480 | None:intergenic |
| ATCACCACAGTCTGTTTGGA+TGG | 0.477109 | 6_4:+89835879 | Msa1003020:intron |
| GCTGAAGGGCTTCAATTTCG+TGG | 0.477342 | 6_4:+89836705 | Msa1003020:CDS |
| TGTTTGGATGGAACATTGCC+TGG | 0.481213 | 6_4:+89835891 | Msa1003020:CDS |
| CAGCCAATTGCAGTTGCTGT+TGG | 0.488140 | 6_4:+89838325 | Msa1003020:intron |
| CGCAGAGCATCCAGAGAGAA+GGG | 0.499707 | 6_4:-89836867 | None:intergenic |
| CGCGGCTTATGACGTGTGGC+AGG | 0.504914 | 6_4:+89837637 | Msa1003020:CDS |
| CCGCAGAGCATCCAGAGAGA+AGG | 0.509186 | 6_4:-89836868 | None:intergenic |
| CCTGGTTACCATTTGGATCG+TGG | 0.510305 | 6_4:+89835909 | Msa1003020:CDS |
| TTGCAGTTGCTGTTGGAGAC+TGG | 0.515469 | 6_4:+89838332 | Msa1003020:CDS |
| AGAAACATGGGAAACCTGTT+CGG | 0.515752 | 6_4:-89836784 | None:intergenic |
| TCATTGCCAGTCTGAGAGAC+AGG | 0.517916 | 6_4:+89838134 | Msa1003020:CDS |
| ATTATGGCAGCTATTGTCAC+AGG | 0.520288 | 6_4:-89838398 | None:intergenic |
| TATGAATTCCTGTAGGGAGG+AGG | 0.530218 | 6_4:+89836132 | Msa1003020:intron |
| TCGTGGTTCCTCAAAATACA+TGG | 0.531611 | 6_4:+89836200 | Msa1003020:CDS |
| AGCTATTGTCACAGGGGTAA+GGG | 0.533131 | 6_4:-89838390 | None:intergenic |
| TGCAGTCATTCCAAGAGCCA+AGG | 0.540000 | 6_4:-89837829 | None:intergenic |
| ATTCAAATCCACGATCCAAA+TGG | 0.544072 | 6_4:-89835917 | None:intergenic |
| CCACGATCCAAATGGTAACC+AGG | 0.549111 | 6_4:-89835909 | None:intergenic |
| CTCTCTGGATGCTCTGCGGG+TGG | 0.556169 | 6_4:+89836872 | Msa1003020:CDS |
| GAAAGTCAAATACCATTCAC+AGG | 0.558058 | 6_4:+89836222 | Msa1003020:CDS |
| GGAGCTGATTCCAAAGGAGC+TGG | 0.563677 | 6_4:+89835230 | Msa1003020:CDS |
| AAGTGTTGTGTCAGATCCAG+AGG | 0.564410 | 6_4:-89835132 | None:intergenic |
| ATGTCTCCTGTCTCTCAGAC+TGG | 0.564494 | 6_4:-89838140 | None:intergenic |
| GCAGTCATTCCAAGAGCCAA+GGG | 0.566026 | 6_4:-89837828 | None:intergenic |
| AGAGTGAGGTCTACCATATG+AGG | 0.570471 | 6_4:-89835200 | None:intergenic |
| GTGCTTCTTTCCTCAGAATG+TGG | 0.572227 | 6_4:+89837580 | Msa1003020:intron |
| ACATGTTCGACCACATTCTG+AGG | 0.577838 | 6_4:-89837590 | None:intergenic |
| CCTTCTCTCTGGATGCTCTG+CGG | 0.578584 | 6_4:+89836868 | Msa1003020:CDS |
| TGCTGGAGACAGTGAAAATG+AGG | 0.579915 | 6_4:+89836474 | Msa1003020:CDS |
| GTCAAATTAAGGTACTGTGA+TGG | 0.583686 | 6_4:+89836442 | Msa1003020:CDS |
| TTGATATACCAACACTCTAT+CGG | 0.587156 | 6_4:-89838576 | None:intergenic |
| CAACAAAATGGACCCAACTT+CGG | 0.599036 | 6_4:+89837468 | Msa1003020:CDS |
| TCTCAAATTCAGCTCCTCCA+AGG | 0.601242 | 6_4:+89837878 | Msa1003020:CDS |
| ATAGAGGAACTATTGTCTCA+AGG | 0.604252 | 6_4:+89836750 | Msa1003020:CDS |
| CAGCTCCTTGAATGAGAGTG+AGG | 0.609174 | 6_4:-89835214 | None:intergenic |
| AGAGATTGAAAACACCTTGG+AGG | 0.618464 | 6_4:-89837892 | None:intergenic |
| CACCCAAACAAATACAAGGA+GGG | 0.619322 | 6_4:-89838478 | None:intergenic |
| TAGTTGGCTTATTCATCTGG+AGG | 0.619415 | 6_4:+89835950 | Msa1003020:CDS |
| TGCTACTACTGATAATAGTG+AGG | 0.620028 | 6_4:-89835021 | None:intergenic |
| AGTCTGAGAGACAGGAGACA+TGG | 0.627603 | 6_4:+89838142 | Msa1003020:CDS |
| ACAATGAGGAATATGTTTGG+AGG | 0.627712 | 6_4:+89837102 | Msa1003020:CDS |
| AATAAACCAGAAGAAAACCC+AGG | 0.629312 | 6_4:+89836255 | Msa1003020:CDS |
| AATACACCCAAACAAATACA+AGG | 0.632833 | 6_4:-89838482 | None:intergenic |
| ATTCAAGGAGCTGATTCCAA+AGG | 0.636479 | 6_4:+89835224 | Msa1003020:CDS |
| TGTAGAATTGATATATCTGG+AGG | 0.641221 | 6_4:+89837075 | Msa1003020:intron |
| AATTCCTGTAGGGAGGAGGA+TGG | 0.645908 | 6_4:+89836136 | Msa1003020:intron |
| TCAACGCGGCTTATGACGTG+TGG | 0.674971 | 6_4:+89837633 | Msa1003020:CDS |
| TTATGGCAGCTATTGTCACA+GGG | 0.677243 | 6_4:-89838397 | None:intergenic |
| GCCGCGTTGAGTAGAAACAA+TGG | 0.677618 | 6_4:-89837620 | None:intergenic |
| TATCTGGAGGACGCACAATG+AGG | 0.686282 | 6_4:+89837088 | Msa1003020:CDS |
| CAGTCATTCCAAGAGCCAAG+GGG | 0.695996 | 6_4:-89837827 | None:intergenic |
| ACACCCAAACAAATACAAGG+AGG | 0.699587 | 6_4:-89838479 | None:intergenic |
| AGTCATTCCAAGAGCCAAGG+GGG | 0.704496 | 6_4:-89837826 | None:intergenic |
| ACCATTGTTTCTACTCAACG+CGG | 0.729768 | 6_4:+89837619 | Msa1003020:CDS |
| TATGGCAGCTATTGTCACAG+GGG | 0.750427 | 6_4:-89838396 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTAAAATTATTTTAAAGATT+AGG | - | chr6_4:89837522-89837541 | None:intergenic | 10.0% |
| !! | CTATAAAAAGATATAAACAA+GGG | - | chr6_4:89835464-89835483 | None:intergenic | 15.0% |
| !! | ACTATAAAAAGATATAAACA+AGG | - | chr6_4:89835465-89835484 | None:intergenic | 15.0% |
| !!! | ATATCTTTTTATAGTTACAA+TGG | + | chr6_4:89835470-89835489 | Msa1003020:intron | 15.0% |
| !! | TTTAATTAATATAATGCTGA+AGG | + | chr6_4:89835566-89835585 | Msa1003020:intron | 15.0% |
| !!! | AAAGTATTGTTATTAAACTT+TGG | - | chr6_4:89835991-89836010 | None:intergenic | 15.0% |
| !! | TATTTAGTATAATATAGCAT+TGG | + | chr6_4:89837170-89837189 | Msa1003020:intron | 15.0% |
| !! | TGATAAGAATTACAAATTTA+TGG | - | chr6_4:89837206-89837225 | None:intergenic | 15.0% |
| !!! | ATTTTTTAATCAGATAAGAA+TGG | - | chr6_4:89838538-89838557 | None:intergenic | 15.0% |
| !!! | TTTTTGTTTTTCAACTATTG+TGG | - | chr6_4:89834937-89834956 | None:intergenic | 20.0% |
| !!! | TTCTTGATTTGTTTTAAGTA+AGG | - | chr6_4:89834965-89834984 | None:intergenic | 20.0% |
| !! | ATTTCATACAATAACTCAAA+GGG | - | chr6_4:89835332-89835351 | None:intergenic | 20.0% |
| !!! | TTTACTCTTTTTAACACAAT+AGG | - | chr6_4:89835822-89835841 | None:intergenic | 20.0% |
| !! | GTTTAATAACAATACTTTCA+AGG | + | chr6_4:89835993-89836012 | Msa1003020:intron | 20.0% |
| !!! | TTCTTTATCCTACATAATTT+TGG | + | chr6_4:89836282-89836301 | Msa1003020:intron | 20.0% |
| !!! | TGTTTTAATTGTCATGAATT+TGG | + | chr6_4:89836374-89836393 | Msa1003020:intron | 20.0% |
| !!! | TAGGAATTTTATAGATAAGA+GGG | - | chr6_4:89836526-89836545 | None:intergenic | 20.0% |
| !!! | ATAGGAATTTTATAGATAAG+AGG | - | chr6_4:89836527-89836546 | None:intergenic | 20.0% |
| !!! | AAATCTTAAGGGATTTTAAT+AGG | - | chr6_4:89836545-89836564 | None:intergenic | 20.0% |
| !!! | AAAATCCCTTAAGATTTTTA+TGG | + | chr6_4:89836548-89836567 | Msa1003020:intron | 20.0% |
| !! | CTAATCAATATATGTATATC+AGG | + | chr6_4:89836844-89836863 | Msa1003020:intron | 20.0% |
| !! | CTTTATCTTGTATTACATTA+AGG | + | chr6_4:89837693-89837712 | Msa1003020:intron | 20.0% |
| ! | AATTTGCATTCTTAGTTTCT+GGG | + | chr6_4:89835102-89835121 | Msa1003020:CDS | 25.0% |
| ! | CATTTCATACAATAACTCAA+AGG | - | chr6_4:89835333-89835352 | None:intergenic | 25.0% |
| ! | AATTCACCAACTAAAGTAAT+GGG | - | chr6_4:89835373-89835392 | None:intergenic | 25.0% |
| ! | AAATTCACCAACTAAAGTAA+TGG | - | chr6_4:89835374-89835393 | None:intergenic | 25.0% |
| !! | AAAGAGAATCTAAAATGATG+AGG | - | chr6_4:89835415-89835434 | None:intergenic | 25.0% |
| ! | TAAAATGTAACCACATATGT+CGG | - | chr6_4:89835665-89835684 | None:intergenic | 25.0% |
| ! | GACTTTCTTCTAAATATAGT+AGG | - | chr6_4:89836040-89836059 | None:intergenic | 25.0% |
| ! | TATATTTAGAAGAAAGTCGA+TGG | + | chr6_4:89836042-89836061 | Msa1003020:intron | 25.0% |
| ! | AACAAATGCCAAAATTATGT+AGG | - | chr6_4:89836293-89836312 | None:intergenic | 25.0% |
| !! | AGGAATTTTATAGATAAGAG+GGG | - | chr6_4:89836525-89836544 | None:intergenic | 25.0% |
| ! | ATTCCAAATGATCAATCTTT+CGG | - | chr6_4:89836640-89836659 | None:intergenic | 25.0% |
| !! | AGTAATATGTGTGTGATTTT+TGG | + | chr6_4:89836669-89836688 | Msa1003020:intron | 25.0% |
| ! | AATTTCGTGGACAAAAAATA+TGG | + | chr6_4:89836718-89836737 | Msa1003020:CDS | 25.0% |
| ! | ACAACAACATAAAGAAACAT+GGG | - | chr6_4:89836799-89836818 | None:intergenic | 25.0% |
| ! | AACAACAACATAAAGAAACA+TGG | - | chr6_4:89836800-89836819 | None:intergenic | 25.0% |
| ! | ATATATAAGTGTCTAGTCAA+TGG | - | chr6_4:89837034-89837053 | None:intergenic | 25.0% |
| ! | TTGTGTAGAATTGATATATC+TGG | + | chr6_4:89837072-89837091 | Msa1003020:intron | 25.0% |
| !! | TGTTTTACGTCTTTGATAAA+AGG | + | chr6_4:89837362-89837381 | Msa1003020:intron | 25.0% |
| ! | CTGATATCAAATATTTGCAA+AGG | - | chr6_4:89837397-89837416 | None:intergenic | 25.0% |
| !! | ATTTTGTTGAGACAACTTTT+TGG | - | chr6_4:89837457-89837476 | None:intergenic | 25.0% |
| ! | AAAAAGTTGTCTCAACAAAA+TGG | + | chr6_4:89837456-89837475 | Msa1003020:CDS | 25.0% |
| !! | ACTATCGATTATTTCATCTA+AGG | - | chr6_4:89838241-89838260 | None:intergenic | 25.0% |
| !! | TTGTTTTTCAACTATTGTGG+TGG | - | chr6_4:89834934-89834953 | None:intergenic | 30.0% |
| GAATTTGCATTCTTAGTTTC+TGG | + | chr6_4:89835101-89835120 | Msa1003020:CDS | 30.0% | |
| ATATGAGGTTGCAATGAATT+AGG | - | chr6_4:89835188-89835207 | None:intergenic | 30.0% | |
| TAATTCATTGCAACCTCATA+TGG | + | chr6_4:89835187-89835206 | Msa1003020:CDS | 30.0% | |
| AGGGTATAATATTCTATGCA+AGG | - | chr6_4:89835313-89835332 | None:intergenic | 30.0% | |
| AACAAGCATAAGAATACTCT+GGG | - | chr6_4:89835769-89835788 | None:intergenic | 30.0% | |
| AAACAAGCATAAGAATACTC+TGG | - | chr6_4:89835770-89835789 | None:intergenic | 30.0% | |
| ! | AAATAGTTGGCTTATTCATC+TGG | + | chr6_4:89835947-89835966 | Msa1003020:CDS | 30.0% |
| CTCTTTCTTTAACTATGCTA+TGG | + | chr6_4:89836088-89836107 | Msa1003020:intron | 30.0% | |
| ACACTTTATGAATTCCTGTA+GGG | + | chr6_4:89836126-89836145 | Msa1003020:intron | 30.0% | |
| ! | TTGACTTTCCATGTATTTTG+AGG | - | chr6_4:89836211-89836230 | None:intergenic | 30.0% |
| GTAGGATAAAGAAAATACCT+GGG | - | chr6_4:89836275-89836294 | None:intergenic | 30.0% | |
| TGTAGGATAAAGAAAATACC+TGG | - | chr6_4:89836276-89836295 | None:intergenic | 30.0% | |
| ACTGGAATAGAGTCAAATTA+AGG | + | chr6_4:89836431-89836450 | Msa1003020:CDS | 30.0% | |
| ! | TCCCTTAAGATTTTTATGGA+AGG | + | chr6_4:89836552-89836571 | Msa1003020:intron | 30.0% |
| GCCTTCCATAAAAATCTTAA+GGG | - | chr6_4:89836556-89836575 | None:intergenic | 30.0% | |
| AGCCTTCCATAAAAATCTTA+AGG | - | chr6_4:89836557-89836576 | None:intergenic | 30.0% | |
| !!! | GATTTTTGGTTCTTTTATCC+AGG | + | chr6_4:89836683-89836702 | Msa1003020:intron | 30.0% |
| TTGTTCAATCTTAATGTTCG+TGG | + | chr6_4:89836815-89836834 | Msa1003020:intron | 30.0% | |
| !! | CACTTCACTTTTGAAGATTT+TGG | - | chr6_4:89836941-89836960 | None:intergenic | 30.0% |
| TGTAGAATTGATATATCTGG+AGG | + | chr6_4:89837075-89837094 | Msa1003020:intron | 30.0% | |
| ACTAATTCTCCTAAAAGCTT+AGG | + | chr6_4:89837298-89837317 | Msa1003020:intron | 30.0% | |
| !!! | CAGTACTGTTTTGAAATTGT+AGG | + | chr6_4:89837414-89837433 | Msa1003020:intron | 30.0% |
| !! | AACTTTTTGGCAGATTTTTC+TGG | - | chr6_4:89837444-89837463 | None:intergenic | 30.0% |
| !! | ATTTCTGAAGTCTGTTTCAA+AGG | - | chr6_4:89838043-89838062 | None:intergenic | 30.0% |
| GGATTATTCTCTGATAACAA+TGG | - | chr6_4:89838293-89838312 | None:intergenic | 30.0% | |
| AATTGGCTGTATAACAAAAC+AGG | - | chr6_4:89838314-89838333 | None:intergenic | 30.0% | |
| AATACACCCAAACAAATACA+AGG | - | chr6_4:89838485-89838504 | None:intergenic | 30.0% | |
| TTGATATACCAACACTCTAT+CGG | - | chr6_4:89838579-89838598 | None:intergenic | 30.0% | |
| AAAAAAGACAACACACGACA+AGG | + | chr6_4:89834860-89834879 | Msa1003020:five_prime_UTR | 35.0% | |
| AAAAAGACAACACACGACAA+GGG | + | chr6_4:89834861-89834880 | Msa1003020:five_prime_UTR | 35.0% | |
| ! | CTATTGTGGTGGAAACAAAA+AGG | - | chr6_4:89834923-89834942 | None:intergenic | 35.0% |
| TGCTACTACTGATAATAGTG+AGG | - | chr6_4:89835024-89835043 | None:intergenic | 35.0% | |
| ! | TGCAAGGTTCTAATACAAAG+AGG | - | chr6_4:89835297-89835316 | None:intergenic | 35.0% |
| !! | AATGGGTTAGCTTCAAAATG+TGG | - | chr6_4:89835356-89835375 | None:intergenic | 35.0% |
| AGCTAACCCATTACTTTAGT+TGG | + | chr6_4:89835364-89835383 | Msa1003020:intron | 35.0% | |
| TGCCTTATATTGTTGTGAAG+TGG | + | chr6_4:89835524-89835543 | Msa1003020:intron | 35.0% | |
| CTCCACTTCACAACAATATA+AGG | - | chr6_4:89835529-89835548 | None:intergenic | 35.0% | |
| CTTATATTGTTGTGAAGTGG+AGG | + | chr6_4:89835527-89835546 | Msa1003020:intron | 35.0% | |
| TGTGCATAACTCAAACTCTT+CGG | + | chr6_4:89835602-89835621 | Msa1003020:intron | 35.0% | |
| ATTCAAATCCACGATCCAAA+TGG | - | chr6_4:89835920-89835939 | None:intergenic | 35.0% | |
| TTGAATCTGGTGCAAATAGT+TGG | + | chr6_4:89835934-89835953 | Msa1003020:CDS | 35.0% | |
| GACACTTTATGAATTCCTGT+AGG | + | chr6_4:89836125-89836144 | Msa1003020:intron | 35.0% | |
| TACAGAAAAAAGACTCATCG+TGG | + | chr6_4:89836183-89836202 | Msa1003020:CDS | 35.0% | |
| GAAAGTCAAATACCATTCAC+AGG | + | chr6_4:89836222-89836241 | Msa1003020:CDS | 35.0% | |
| TTGCTCAATATTCCTGTGAA+TGG | - | chr6_4:89836237-89836256 | None:intergenic | 35.0% | |
| AATAAACCAGAAGAAAACCC+AGG | + | chr6_4:89836255-89836274 | Msa1003020:CDS | 35.0% | |
| ! | AAAATACCTGGGTTTTCTTC+TGG | - | chr6_4:89836264-89836283 | None:intergenic | 35.0% |
| ATAAGTTGCAGCATCAATGA+GGG | - | chr6_4:89836339-89836358 | None:intergenic | 35.0% | |
| AAAGAAATCTGTGCATGGAA+TGG | - | chr6_4:89836410-89836429 | None:intergenic | 35.0% | |
| CAGTTAAAGAAATCTGTGCA+TGG | - | chr6_4:89836415-89836434 | None:intergenic | 35.0% | |
| CATGCACAGATTTCTTTAAC+TGG | + | chr6_4:89836413-89836432 | Msa1003020:intron | 35.0% | |
| !! | GTCAAATTAAGGTACTGTGA+TGG | + | chr6_4:89836442-89836461 | Msa1003020:CDS | 35.0% |
| AGCAATTAACTCAGCACTAA+AGG | - | chr6_4:89836616-89836635 | None:intergenic | 35.0% | |
| CTACCGAAAGATTGATCATT+TGG | + | chr6_4:89836634-89836653 | Msa1003020:intron | 35.0% | |
| ATAGAGGAACTATTGTCTCA+AGG | + | chr6_4:89836750-89836769 | Msa1003020:CDS | 35.0% | |
| GAACTCATCACAGTGTATTA+TGG | - | chr6_4:89836906-89836925 | None:intergenic | 35.0% | |
| !! | AAGATTTTGGTAACAAGCTC+TGG | - | chr6_4:89836928-89836947 | None:intergenic | 35.0% |
| ACAATGAGGAATATGTTTGG+AGG | + | chr6_4:89837102-89837121 | Msa1003020:CDS | 35.0% | |
| TTGAAGAACTGTGTGGTTAA+TGG | - | chr6_4:89837258-89837277 | None:intergenic | 35.0% | |
| ! | ACTTGACAACCTAAGCTTTT+AGG | - | chr6_4:89837310-89837329 | None:intergenic | 35.0% |
| GAATGAGAATTACCGAAGTT+GGG | - | chr6_4:89837483-89837502 | None:intergenic | 35.0% | |
| TGAATGAGAATTACCGAAGT+TGG | - | chr6_4:89837484-89837503 | None:intergenic | 35.0% | |
| TGCTTCGGATATTCAAAACT+TGG | - | chr6_4:89837549-89837568 | None:intergenic | 35.0% | |
| ACATGAACTATGTTTCCATC+AGG | + | chr6_4:89837772-89837791 | Msa1003020:intron | 35.0% | |
| AGTAGAGATTGAAAACACCT+TGG | - | chr6_4:89837898-89837917 | None:intergenic | 35.0% | |
| TTCTCAAGATCATCTCAAAC+TGG | + | chr6_4:89838087-89838106 | Msa1003020:CDS | 35.0% | |
| CAAACCTTGTCATCAATAAG+AGG | - | chr6_4:89838183-89838202 | None:intergenic | 35.0% | |
| !! | CAATAGCTTTGACAACTTCT+CGG | - | chr6_4:89838366-89838385 | None:intergenic | 35.0% |
| CTCTTCTAAACACCAGATTA+TGG | - | chr6_4:89838417-89838436 | None:intergenic | 35.0% | |
| TTCCCTCCTTGTATTTGTTT+GGG | + | chr6_4:89838476-89838495 | Msa1003020:three_prime_UTR | 35.0% | |
| ! | CAATTTTACCGATAGAGTGT+TGG | + | chr6_4:89838568-89838587 | Msa1003020:three_prime_UTR | 35.0% |
| ! | ATTCAAGGAGCTGATTCCAA+AGG | + | chr6_4:89835224-89835243 | Msa1003020:CDS | 40.0% |
| TCTTATCACCACAGTCTGTT+TGG | + | chr6_4:89835875-89835894 | Msa1003020:intron | 40.0% | |
| AACATTGCCTGGTTACCATT+TGG | + | chr6_4:89835902-89835921 | Msa1003020:CDS | 40.0% | |
| TTGGATCGTGGATTTGAATC+TGG | + | chr6_4:89835921-89835940 | Msa1003020:CDS | 40.0% | |
| ! | TAGTTGGCTTATTCATCTGG+AGG | + | chr6_4:89835950-89835969 | Msa1003020:CDS | 40.0% |
| CTTTATGAATTCCTGTAGGG+AGG | + | chr6_4:89836129-89836148 | Msa1003020:intron | 40.0% | |
| TCGTGGTTCCTCAAAATACA+TGG | + | chr6_4:89836200-89836219 | Msa1003020:CDS | 40.0% | |
| CATAAGTTGCAGCATCAATG+AGG | - | chr6_4:89836340-89836359 | None:intergenic | 40.0% | |
| ! | GTTCTTTTATCCAGGCTGAA+GGG | + | chr6_4:89836691-89836710 | Msa1003020:intron | 40.0% |
| !! | AATATGGCTTGCTGCAATAG+AGG | + | chr6_4:89836734-89836753 | Msa1003020:CDS | 40.0% |
| AGAAACATGGGAAACCTGTT+CGG | - | chr6_4:89836787-89836806 | None:intergenic | 40.0% | |
| ! | GTGAAGTGTTTAAGTGATGC+AGG | + | chr6_4:89836953-89836972 | Msa1003020:CDS | 40.0% |
| CGCACAATGAGGAATATGTT+TGG | + | chr6_4:89837099-89837118 | Msa1003020:CDS | 40.0% | |
| ! | GTGGTTAATGGTTTGGAATG+TGG | - | chr6_4:89837246-89837265 | None:intergenic | 40.0% |
| GAACTGTGTGGTTAATGGTT+TGG | - | chr6_4:89837253-89837272 | None:intergenic | 40.0% | |
| CCAAAACTTGAAGAACTGTG+TGG | - | chr6_4:89837265-89837284 | None:intergenic | 40.0% | |
| !! | CCACACAGTTCTTCAAGTTT+TGG | + | chr6_4:89837262-89837281 | Msa1003020:intron | 40.0% |
| ! | AAGCTTAGGTTGTCAAGTGA+AGG | + | chr6_4:89837312-89837331 | Msa1003020:intron | 40.0% |
| CAACAAAATGGACCCAACTT+CGG | + | chr6_4:89837468-89837487 | Msa1003020:CDS | 40.0% | |
| !! | ACCATTGTTTCTACTCAACG+CGG | + | chr6_4:89837619-89837638 | Msa1003020:CDS | 40.0% |
| AGAGATTGAAAACACCTTGG+AGG | - | chr6_4:89837895-89837914 | None:intergenic | 40.0% | |
| ! | CTCTCCTCTTATTGATGACA+AGG | + | chr6_4:89838176-89838195 | Msa1003020:CDS | 40.0% |
| TTATGGCAGCTATTGTCACA+GGG | - | chr6_4:89838400-89838419 | None:intergenic | 40.0% | |
| ATTATGGCAGCTATTGTCAC+AGG | - | chr6_4:89838401-89838420 | None:intergenic | 40.0% | |
| TGACAATAGCTGCCATAATC+TGG | + | chr6_4:89838402-89838421 | Msa1003020:CDS | 40.0% | |
| CTTCCCTCCTTGTATTTGTT+TGG | + | chr6_4:89838475-89838494 | Msa1003020:three_prime_UTR | 40.0% | |
| CACCCAAACAAATACAAGGA+GGG | - | chr6_4:89838481-89838500 | None:intergenic | 40.0% | |
| ACACCCAAACAAATACAAGG+AGG | - | chr6_4:89838482-89838501 | None:intergenic | 40.0% | |
| !!! | GAAGCTGCTGCTGATTTTGT+TGG | + | chr6_4:89835073-89835092 | Msa1003020:CDS | 45.0% |
| ! | GTTTCTGGGTTTATCTCCTC+TGG | + | chr6_4:89835116-89835135 | Msa1003020:CDS | 45.0% |
| ! | AAGTGTTGTGTCAGATCCAG+AGG | - | chr6_4:89835135-89835154 | None:intergenic | 45.0% |
| AGAGTGAGGTCTACCATATG+AGG | - | chr6_4:89835203-89835222 | None:intergenic | 45.0% | |
| GTAGACCTCACTCTCATTCA+AGG | + | chr6_4:89835209-89835228 | Msa1003020:CDS | 45.0% | |
| CTACACTGACACATAGACAC+TGG | - | chr6_4:89835713-89835732 | None:intergenic | 45.0% | |
| GACATACACAACATGGACAG+CGG | - | chr6_4:89835739-89835758 | None:intergenic | 45.0% | |
| GCTGTCCATGTTGTGTATGT+CGG | + | chr6_4:89835738-89835757 | Msa1003020:intron | 45.0% | |
| !! | AAGCACCGACATACACAACA+TGG | - | chr6_4:89835746-89835765 | None:intergenic | 45.0% |
| ATCACCACAGTCTGTTTGGA+TGG | + | chr6_4:89835879-89835898 | Msa1003020:intron | 45.0% | |
| TGTTCCATCCAAACAGACTG+TGG | - | chr6_4:89835886-89835905 | None:intergenic | 45.0% | |
| TGTTTGGATGGAACATTGCC+TGG | + | chr6_4:89835891-89835910 | Msa1003020:CDS | 45.0% | |
| TATGAATTCCTGTAGGGAGG+AGG | + | chr6_4:89836132-89836151 | Msa1003020:intron | 45.0% | |
| TGCTGGAGACAGTGAAAATG+AGG | + | chr6_4:89836474-89836493 | Msa1003020:CDS | 45.0% | |
| ! | GGTTCTTTTATCCAGGCTGA+AGG | + | chr6_4:89836690-89836709 | Msa1003020:intron | 45.0% |
| ! | TGGAGGTGTAGTTCAGTTAC+AGG | + | chr6_4:89837119-89837138 | Msa1003020:CDS | 45.0% |
| ! | CATTCTGAGGAAAGAAGCAC+TGG | - | chr6_4:89837580-89837599 | None:intergenic | 45.0% |
| GTGCTTCTTTCCTCAGAATG+TGG | + | chr6_4:89837580-89837599 | Msa1003020:intron | 45.0% | |
| ACATGTTCGACCACATTCTG+AGG | - | chr6_4:89837593-89837612 | None:intergenic | 45.0% | |
| TCTCAAATTCAGCTCCTCCA+AGG | + | chr6_4:89837878-89837897 | Msa1003020:CDS | 45.0% | |
| TCTCCAACAGCAACTGCAAT+TGG | - | chr6_4:89838331-89838350 | None:intergenic | 45.0% | |
| AGCTATTGTCACAGGGGTAA+GGG | - | chr6_4:89838393-89838412 | None:intergenic | 45.0% | |
| TATGGCAGCTATTGTCACAG+GGG | - | chr6_4:89838399-89838418 | None:intergenic | 45.0% | |
| CAGCTCCTTGAATGAGAGTG+AGG | - | chr6_4:89835217-89835236 | None:intergenic | 50.0% | |
| GAGAGAGATACCAGCTCCTT+TGG | - | chr6_4:89835243-89835262 | None:intergenic | 50.0% | |
| CGACATCTCACCGACATATG+TGG | + | chr6_4:89835652-89835671 | Msa1003020:intron | 50.0% | |
| CCACGATCCAAATGGTAACC+AGG | - | chr6_4:89835912-89835931 | None:intergenic | 50.0% | |
| CCTGGTTACCATTTGGATCG+TGG | + | chr6_4:89835909-89835928 | Msa1003020:CDS | 50.0% | |
| AATTCCTGTAGGGAGGAGGA+TGG | + | chr6_4:89836136-89836155 | Msa1003020:intron | 50.0% | |
| !! | TGTGATGGAGCGTCTTTTGC+TGG | + | chr6_4:89836457-89836476 | Msa1003020:CDS | 50.0% |
| GAAATTGAAGCCCTTCAGCC+TGG | - | chr6_4:89836704-89836723 | None:intergenic | 50.0% | |
| GCTGAAGGGCTTCAATTTCG+TGG | + | chr6_4:89836705-89836724 | Msa1003020:CDS | 50.0% | |
| AGGAATGCAGAATGCCGAAC+AGG | + | chr6_4:89836770-89836789 | Msa1003020:CDS | 50.0% | |
| GTATATCAGGCCCTTCTCTC+TGG | + | chr6_4:89836857-89836876 | Msa1003020:intron | 50.0% | |
| TATCTGGAGGACGCACAATG+AGG | + | chr6_4:89837088-89837107 | Msa1003020:CDS | 50.0% | |
| GCACTGGACGAAACATGCTT+CGG | - | chr6_4:89837564-89837583 | None:intergenic | 50.0% | |
| GCCGCGTTGAGTAGAAACAA+TGG | - | chr6_4:89837623-89837642 | None:intergenic | 50.0% | |
| ATGACGTGTGGCAGGTAACA+TGG | + | chr6_4:89837645-89837664 | Msa1003020:intron | 50.0% | |
| !! | CTAAACTGGCTTGGACCTGA+TGG | - | chr6_4:89837790-89837809 | None:intergenic | 50.0% |
| !! | TCTTTGGGGCTAAACTGGCT+TGG | - | chr6_4:89837799-89837818 | None:intergenic | 50.0% |
| !! | AGCTGTCTTTGGGGCTAAAC+TGG | - | chr6_4:89837804-89837823 | None:intergenic | 50.0% |
| AGTCATTCCAAGAGCCAAGG+GGG | - | chr6_4:89837829-89837848 | None:intergenic | 50.0% | |
| CAGTCATTCCAAGAGCCAAG+GGG | - | chr6_4:89837830-89837849 | None:intergenic | 50.0% | |
| GCAGTCATTCCAAGAGCCAA+GGG | - | chr6_4:89837831-89837850 | None:intergenic | 50.0% | |
| TGCAGTCATTCCAAGAGCCA+AGG | - | chr6_4:89837832-89837851 | None:intergenic | 50.0% | |
| TCATTGCCAGTCTGAGAGAC+AGG | + | chr6_4:89838134-89838153 | Msa1003020:CDS | 50.0% | |
| ATGTCTCCTGTCTCTCAGAC+TGG | - | chr6_4:89838143-89838162 | None:intergenic | 50.0% | |
| AGTCTGAGAGACAGGAGACA+TGG | + | chr6_4:89838142-89838161 | Msa1003020:CDS | 50.0% | |
| CAGCCAATTGCAGTTGCTGT+TGG | + | chr6_4:89838325-89838344 | Msa1003020:intron | 50.0% | |
| ! | TTGCAGTTGCTGTTGGAGAC+TGG | + | chr6_4:89838332-89838351 | Msa1003020:CDS | 50.0% |
| CAGCTATTGTCACAGGGGTA+AGG | - | chr6_4:89838394-89838413 | None:intergenic | 50.0% | |
| ! | GGAGCTGATTCCAAAGGAGC+TGG | + | chr6_4:89835230-89835249 | Msa1003020:CDS | 55.0% |
| ! | CGCAGAGCATCCAGAGAGAA+GGG | - | chr6_4:89836870-89836889 | None:intergenic | 55.0% |
| CCTTCTCTCTGGATGCTCTG+CGG | + | chr6_4:89836868-89836887 | Msa1003020:CDS | 55.0% | |
| CTTCTCTCTGGATGCTCTGC+GGG | + | chr6_4:89836869-89836888 | Msa1003020:CDS | 55.0% | |
| TCAACGCGGCTTATGACGTG+TGG | + | chr6_4:89837633-89837652 | Msa1003020:CDS | 55.0% | |
| AAGGGGGTCAGCTGTCTTTG+GGG | - | chr6_4:89837813-89837832 | None:intergenic | 55.0% | |
| CAAGGGGGTCAGCTGTCTTT+GGG | - | chr6_4:89837814-89837833 | None:intergenic | 55.0% | |
| CACACCATCCTCCTCCCTAC+AGG | - | chr6_4:89836143-89836162 | None:intergenic | 60.0% | |
| ! | CCGCAGAGCATCCAGAGAGA+AGG | - | chr6_4:89836871-89836890 | None:intergenic | 60.0% |
| CCAAGGGGGTCAGCTGTCTT+TGG | - | chr6_4:89837815-89837834 | None:intergenic | 60.0% | |
| CCAAAGACAGCTGACCCCCT+TGG | + | chr6_4:89837812-89837831 | Msa1003020:CDS | 60.0% | |
| CTCTCTGGATGCTCTGCGGG+TGG | + | chr6_4:89836872-89836891 | Msa1003020:CDS | 65.0% | |
| CGCGGCTTATGACGTGTGGC+AGG | + | chr6_4:89837637-89837656 | Msa1003020:CDS | 65.0% | |
| ! | CAGCTGACCCCCTTGGCTCT+TGG | + | chr6_4:89837819-89837838 | Msa1003020:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 89834823 | 89838638 | 89834823 | ID=Msa1003020;Name=Msa1003020 |
| chr6_4 | mRNA | 89834823 | 89838638 | 89834823 | ID=Msa1003020-mRNA-1;Parent=Msa1003020;Name=Msa1003020-mRNA-1;_AED=0.15;_eAED=0.15;_QI=242|1|1|1|1|1|12|197|414 |
| chr6_4 | exon | 89834823 | 89835251 | 89834823 | ID=Msa1003020-mRNA-1:exon:17477;Parent=Msa1003020-mRNA-1 |
| chr6_4 | exon | 89835889 | 89835971 | 89835889 | ID=Msa1003020-mRNA-1:exon:17478;Parent=Msa1003020-mRNA-1 |
| chr6_4 | exon | 89836147 | 89836276 | 89836147 | ID=Msa1003020-mRNA-1:exon:17479;Parent=Msa1003020-mRNA-1 |
| chr6_4 | exon | 89836422 | 89836495 | 89836422 | ID=Msa1003020-mRNA-1:exon:17480;Parent=Msa1003020-mRNA-1 |
| chr6_4 | exon | 89836705 | 89836791 | 89836705 | ID=Msa1003020-mRNA-1:exon:17481;Parent=Msa1003020-mRNA-1 |
| chr6_4 | exon | 89836866 | 89836990 | 89836866 | ID=Msa1003020-mRNA-1:exon:17482;Parent=Msa1003020-mRNA-1 |
| chr6_4 | exon | 89837080 | 89837140 | 89837080 | ID=Msa1003020-mRNA-1:exon:17483;Parent=Msa1003020-mRNA-1 |
| chr6_4 | exon | 89837436 | 89837489 | 89837436 | ID=Msa1003020-mRNA-1:exon:17484;Parent=Msa1003020-mRNA-1 |
| chr6_4 | exon | 89837581 | 89837658 | 89837581 | ID=Msa1003020-mRNA-1:exon:17485;Parent=Msa1003020-mRNA-1 |
| chr6_4 | exon | 89837794 | 89837899 | 89837794 | ID=Msa1003020-mRNA-1:exon:17486;Parent=Msa1003020-mRNA-1 |
| chr6_4 | exon | 89838052 | 89838197 | 89838052 | ID=Msa1003020-mRNA-1:exon:17487;Parent=Msa1003020-mRNA-1 |
| chr6_4 | exon | 89838328 | 89838638 | 89838328 | ID=Msa1003020-mRNA-1:exon:17488;Parent=Msa1003020-mRNA-1 |
| chr6_4 | five_prime_UTR | 89834823 | 89835064 | 89834823 | ID=Msa1003020-mRNA-1:five_prime_utr;Parent=Msa1003020-mRNA-1 |
| chr6_4 | CDS | 89835065 | 89835251 | 89835065 | ID=Msa1003020-mRNA-1:cds;Parent=Msa1003020-mRNA-1 |
| chr6_4 | CDS | 89835889 | 89835971 | 89835889 | ID=Msa1003020-mRNA-1:cds;Parent=Msa1003020-mRNA-1 |
| chr6_4 | CDS | 89836147 | 89836276 | 89836147 | ID=Msa1003020-mRNA-1:cds;Parent=Msa1003020-mRNA-1 |
| chr6_4 | CDS | 89836422 | 89836495 | 89836422 | ID=Msa1003020-mRNA-1:cds;Parent=Msa1003020-mRNA-1 |
| chr6_4 | CDS | 89836705 | 89836791 | 89836705 | ID=Msa1003020-mRNA-1:cds;Parent=Msa1003020-mRNA-1 |
| chr6_4 | CDS | 89836866 | 89836990 | 89836866 | ID=Msa1003020-mRNA-1:cds;Parent=Msa1003020-mRNA-1 |
| chr6_4 | CDS | 89837080 | 89837140 | 89837080 | ID=Msa1003020-mRNA-1:cds;Parent=Msa1003020-mRNA-1 |
| chr6_4 | CDS | 89837436 | 89837489 | 89837436 | ID=Msa1003020-mRNA-1:cds;Parent=Msa1003020-mRNA-1 |
| chr6_4 | CDS | 89837581 | 89837658 | 89837581 | ID=Msa1003020-mRNA-1:cds;Parent=Msa1003020-mRNA-1 |
| chr6_4 | CDS | 89837794 | 89837899 | 89837794 | ID=Msa1003020-mRNA-1:cds;Parent=Msa1003020-mRNA-1 |
| chr6_4 | CDS | 89838052 | 89838197 | 89838052 | ID=Msa1003020-mRNA-1:cds;Parent=Msa1003020-mRNA-1 |
| chr6_4 | CDS | 89838328 | 89838441 | 89838328 | ID=Msa1003020-mRNA-1:cds;Parent=Msa1003020-mRNA-1 |
| chr6_4 | three_prime_UTR | 89838442 | 89838638 | 89838442 | ID=Msa1003020-mRNA-1:three_prime_utr;Parent=Msa1003020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
