Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081490 | XP_013469132.1 | 95.652 | 414 | 9 | 3 | 1 | 414 | 1 | 405 | 0.0 | 812 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081490 | sp|F4I839|PAE2_ARATH | 63.333 | 420 | 144 | 2 | 2 | 413 | 27 | 444 | 0.0 | 574 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081490 | A0A072VYL4 | 95.652 | 414 | 9 | 3 | 1 | 414 | 1 | 405 | 0.0 | 812 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0019640 | Msa0081490 | 0.835420 | 1.695210e-56 | -8.615850e-47 |
| Msa0081350 | Msa0081490 | 0.940832 | 1.186901e-100 | -8.615850e-47 |
| Msa0081490 | Msa0173650 | 0.927125 | 1.815292e-91 | -8.615850e-47 |
| Msa0081490 | Msa1003020 | 0.967025 | 1.034562e-126 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081490 | MtrunA17_Chr1g0193761 | 95.652 | 414 | 9 | 3 | 1 | 414 | 1 | 405 | 0.0 | 812 |
| Msa0081490 | MtrunA17_Chr7g0270931 | 73.671 | 414 | 103 | 2 | 2 | 411 | 3 | 414 | 0.0 | 654 |
| Msa0081490 | MtrunA17_Chr1g0193381 | 68.123 | 389 | 122 | 1 | 26 | 412 | 28 | 416 | 0.0 | 587 |
| Msa0081490 | MtrunA17_Chr7g0271231 | 71.311 | 366 | 105 | 0 | 46 | 411 | 53 | 418 | 0.0 | 581 |
| Msa0081490 | MtrunA17_Chr4g0069571 | 63.007 | 419 | 140 | 4 | 1 | 411 | 9 | 420 | 0.0 | 553 |
| Msa0081490 | MtrunA17_Chr5g0408881 | 53.867 | 362 | 165 | 1 | 49 | 408 | 29 | 390 | 5.38e-153 | 440 |
| Msa0081490 | MtrunA17_Chr7g0238491 | 50.000 | 406 | 192 | 4 | 15 | 414 | 28 | 428 | 1.19e-147 | 426 |
| Msa0081490 | MtrunA17_Chr8g0369681 | 49.730 | 370 | 184 | 1 | 45 | 412 | 23 | 392 | 2.42e-146 | 422 |
| Msa0081490 | MtrunA17_Chr8g0369651 | 49.589 | 365 | 182 | 1 | 49 | 411 | 28 | 392 | 4.77e-146 | 420 |
| Msa0081490 | MtrunA17_Chr1g0203101 | 54.768 | 367 | 161 | 3 | 49 | 410 | 39 | 405 | 5.92e-146 | 421 |
| Msa0081490 | MtrunA17_Chr1g0203121 | 54.223 | 367 | 163 | 3 | 49 | 410 | 39 | 405 | 7.61e-143 | 413 |
| Msa0081490 | MtrunA17_Chr5g0418101 | 49.041 | 365 | 180 | 2 | 48 | 410 | 41 | 401 | 1.37e-135 | 394 |
| Msa0081490 | MtrunA17_Chr1g0163701 | 49.515 | 103 | 52 | 0 | 229 | 331 | 270 | 372 | 6.99e-28 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081490 | AT1G57590.1 | 63.333 | 420 | 144 | 2 | 2 | 413 | 27 | 444 | 0.0 | 574 |
| Msa0081490 | AT5G26670.1 | 63.876 | 418 | 134 | 2 | 7 | 412 | 4 | 416 | 0.0 | 567 |
| Msa0081490 | AT3G62060.2 | 63.981 | 422 | 135 | 5 | 3 | 411 | 1 | 418 | 0.0 | 566 |
| Msa0081490 | AT3G05910.1 | 68.733 | 371 | 115 | 1 | 42 | 412 | 46 | 415 | 0.0 | 566 |
| Msa0081490 | AT3G62060.1 | 63.981 | 422 | 135 | 5 | 3 | 411 | 1 | 418 | 0.0 | 565 |
| Msa0081490 | AT2G46930.1 | 63.549 | 417 | 144 | 3 | 3 | 412 | 1 | 416 | 0.0 | 560 |
| Msa0081490 | AT4G19420.1 | 56.438 | 365 | 157 | 1 | 49 | 411 | 25 | 389 | 5.89e-161 | 459 |
| Msa0081490 | AT4G19420.2 | 56.438 | 365 | 157 | 1 | 49 | 411 | 25 | 389 | 5.89e-161 | 459 |
| Msa0081490 | AT5G26670.3 | 66.779 | 298 | 99 | 0 | 115 | 412 | 1 | 298 | 3.46e-157 | 445 |
| Msa0081490 | AT5G26670.2 | 66.779 | 298 | 99 | 0 | 115 | 412 | 1 | 298 | 3.46e-157 | 445 |
| Msa0081490 | AT5G26670.4 | 66.779 | 298 | 99 | 0 | 115 | 412 | 1 | 298 | 3.46e-157 | 445 |
| Msa0081490 | AT4G19420.4 | 51.750 | 400 | 156 | 2 | 49 | 411 | 25 | 424 | 6.61e-154 | 442 |
| Msa0081490 | AT5G23870.2 | 55.163 | 368 | 159 | 4 | 49 | 410 | 35 | 402 | 9.73e-154 | 442 |
| Msa0081490 | AT5G23870.1 | 55.163 | 368 | 159 | 4 | 49 | 410 | 35 | 402 | 9.86e-154 | 441 |
| Msa0081490 | AT5G23870.4 | 55.163 | 368 | 159 | 4 | 49 | 410 | 35 | 402 | 9.86e-154 | 441 |
| Msa0081490 | AT5G23870.3 | 55.163 | 368 | 159 | 4 | 49 | 410 | 35 | 402 | 1.18e-153 | 442 |
| Msa0081490 | AT1G09550.1 | 55.000 | 360 | 157 | 3 | 31 | 390 | 28 | 382 | 7.16e-150 | 430 |
| Msa0081490 | AT3G09410.1 | 50.000 | 400 | 193 | 2 | 15 | 411 | 31 | 426 | 7.74e-149 | 429 |
| Msa0081490 | AT3G05910.2 | 68.582 | 261 | 81 | 1 | 43 | 303 | 47 | 306 | 3.07e-136 | 393 |
| Msa0081490 | AT3G09405.1 | 48.294 | 381 | 191 | 3 | 29 | 406 | 32 | 409 | 3.65e-136 | 396 |
| Msa0081490 | AT4G19410.1 | 47.645 | 361 | 186 | 2 | 49 | 406 | 24 | 384 | 7.03e-135 | 392 |
| Msa0081490 | AT5G45280.2 | 46.814 | 361 | 189 | 2 | 49 | 406 | 24 | 384 | 9.66e-133 | 387 |
| Msa0081490 | AT3G09410.3 | 48.634 | 366 | 181 | 2 | 15 | 377 | 31 | 392 | 1.70e-129 | 379 |
| Msa0081490 | AT4G19410.2 | 47.965 | 344 | 177 | 1 | 49 | 390 | 24 | 367 | 4.17e-128 | 379 |
| Msa0081490 | AT3G09405.2 | 48.845 | 303 | 150 | 2 | 107 | 406 | 2 | 302 | 2.63e-109 | 324 |
| Msa0081490 | AT5G45280.1 | 49.474 | 285 | 142 | 1 | 49 | 331 | 24 | 308 | 9.47e-109 | 325 |
| Msa0081490 | AT4G19420.3 | 59.817 | 219 | 86 | 1 | 49 | 265 | 25 | 243 | 1.00e-93 | 284 |
Find 95 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTTGCATTCTTAGTTTC+TGG | 0.113356 | 1_2:-60055251 | Msa0081490:CDS |
| CTTCCCTCCTTGTATTTGTT+TGG | 0.210251 | 1_2:-60051872 | Msa0081490:three_prime_UTR |
| GAACTCATCACAGTGTATTA+TGG | 0.279288 | 1_2:+60053444 | None:intergenic |
| CATGCACAGATTTCTTTAAC+TGG | 0.280335 | 1_2:-60053934 | Msa0081490:intron |
| AATTTGCATTCTTAGTTTCT+GGG | 0.281723 | 1_2:-60055250 | Msa0081490:CDS |
| AGCTGTCTTTGGGGCTAAAC+TGG | 0.296500 | 1_2:+60052546 | None:intergenic |
| ACTGGAATAGAGTCAAATTA+AGG | 0.300173 | 1_2:-60053916 | Msa0081490:CDS |
| TTCCCTCCTTGTATTTGTTT+GGG | 0.304087 | 1_2:-60051871 | Msa0081490:three_prime_UTR |
| TGGAGGTGTAGTTCAGTTAC+AGG | 0.319230 | 1_2:-60053228 | Msa0081490:intron |
| GTTTCTGGGTTTATCTCCTC+TGG | 0.329452 | 1_2:-60055236 | Msa0081490:CDS |
| TCTTATCACCACAGTCTGTT+TGG | 0.333070 | 1_2:-60054472 | Msa0081490:intron |
| ATATGAGGTTGCAATGAATT+AGG | 0.345810 | 1_2:+60055167 | None:intergenic |
| AACATTGCCTGGTTACCATT+TGG | 0.363625 | 1_2:-60054445 | Msa0081490:CDS |
| GAGAGAGATACCAGCTCCTT+TGG | 0.363704 | 1_2:+60055112 | None:intergenic |
| CTCTTCTAAACACCAGATTA+TGG | 0.376863 | 1_2:+60051933 | None:intergenic |
| GTATATCAGGCCCTTCTCTC+TGG | 0.378444 | 1_2:-60053490 | Msa0081490:intron |
| TTCTGCATTGAATAGCAAAA+TGG | 0.379784 | 1_2:-60051731 | Msa0081490:three_prime_UTR |
| CTTCTCTCTGGATGCTCTGC+GGG | 0.380263 | 1_2:-60053478 | Msa0081490:CDS |
| CTATTGTGGTGGAAACAAAA+AGG | 0.388388 | 1_2:+60055424 | None:intergenic |
| TTGTGTAGAATTGATATATC+TGG | 0.393324 | 1_2:-60053275 | Msa0081490:intron |
| TTGGATCGTGGATTTGAATC+TGG | 0.394258 | 1_2:-60054426 | Msa0081490:CDS |
| CAATAGCTTTGACAACTTCT+CGG | 0.399277 | 1_2:+60051984 | None:intergenic |
| TGAATGAGAATTACCGAAGT+TGG | 0.402427 | 1_2:+60052866 | None:intergenic |
| TAATTCATTGCAACCTCATA+TGG | 0.405524 | 1_2:-60055165 | Msa0081490:CDS |
| TTGCTCAATATTCCTGTGAA+TGG | 0.409923 | 1_2:+60054113 | None:intergenic |
| TGACAATAGCTGCCATAATC+TGG | 0.419500 | 1_2:-60051945 | Msa0081490:CDS |
| TCTCCAACAGCAACTGCAAT+TGG | 0.422862 | 1_2:+60052019 | None:intergenic |
| CGCACAATGAGGAATATGTT+TGG | 0.429123 | 1_2:-60053248 | Msa0081490:CDS |
| TTCTCAAGATCATCTCAAAC+TGG | 0.432587 | 1_2:-60052260 | Msa0081490:CDS |
| GTGAAGTGTTTAAGTGATGC+AGG | 0.433309 | 1_2:-60053394 | Msa0081490:CDS |
| TTGAATCTGGTGCAAATAGT+TGG | 0.437940 | 1_2:-60054413 | Msa0081490:CDS |
| TCTTTGGGGCTAAACTGGCT+TGG | 0.447959 | 1_2:+60052551 | None:intergenic |
| AAATAGTTGGCTTATTCATC+TGG | 0.452603 | 1_2:-60054400 | Msa0081490:CDS |
| AATATGGCTTGCTGCAATAG+AGG | 0.452909 | 1_2:-60053613 | Msa0081490:CDS |
| CAAACCTTGTCATCAATAAG+AGG | 0.455553 | 1_2:+60052167 | None:intergenic |
| CAGCTATTGTCACAGGGGTA+AGG | 0.457583 | 1_2:+60051956 | None:intergenic |
| CTCTCCTCTTATTGATGACA+AGG | 0.463103 | 1_2:-60052171 | Msa0081490:intron |
| AGGAATGCAGAATGCCGAAC+AGG | 0.466856 | 1_2:-60053577 | Msa0081490:intron |
| GTAGACCTCACTCTCATTCA+AGG | 0.469696 | 1_2:-60055143 | Msa0081490:CDS |
| GAATGAGAATTACCGAAGTT+GGG | 0.474842 | 1_2:+60052867 | None:intergenic |
| ATCACCACAGTCTGTTTGGA+TGG | 0.477109 | 1_2:-60054468 | Msa0081490:intron |
| GCTGAAGGGCTTCAATTTCG+TGG | 0.477342 | 1_2:-60053642 | Msa0081490:CDS |
| TGTTTGGATGGAACATTGCC+TGG | 0.481213 | 1_2:-60054456 | Msa0081490:CDS |
| CAGCCAATTGCAGTTGCTGT+TGG | 0.488140 | 1_2:-60052022 | Msa0081490:CDS |
| CGCAGAGCATCCAGAGAGAA+GGG | 0.499707 | 1_2:+60053480 | None:intergenic |
| CGCGGCTTATGACGTGTGGC+AGG | 0.504914 | 1_2:-60052710 | Msa0081490:intron |
| CCGCAGAGCATCCAGAGAGA+AGG | 0.509186 | 1_2:+60053479 | None:intergenic |
| CCTGGTTACCATTTGGATCG+TGG | 0.510305 | 1_2:-60054438 | Msa0081490:CDS |
| TTGCAGTTGCTGTTGGAGAC+TGG | 0.515469 | 1_2:-60052015 | Msa0081490:CDS |
| AGAAACATGGGAAACCTGTT+CGG | 0.515752 | 1_2:+60053563 | None:intergenic |
| TCATTGCCAGTCTGAGAGAC+AGG | 0.517916 | 1_2:-60052213 | Msa0081490:CDS |
| ATTATGGCAGCTATTGTCAC+AGG | 0.520288 | 1_2:+60051949 | None:intergenic |
| TATGAATTCCTGTAGGGAGG+AGG | 0.530218 | 1_2:-60054215 | Msa0081490:intron |
| TCGTGGTTCCTCAAAATACA+TGG | 0.531611 | 1_2:-60054147 | Msa0081490:CDS |
| AGCTATTGTCACAGGGGTAA+GGG | 0.533131 | 1_2:+60051957 | None:intergenic |
| TGCAGTCATTCCAAGAGCCA+AGG | 0.540000 | 1_2:+60052518 | None:intergenic |
| ATTCAAATCCACGATCCAAA+TGG | 0.544072 | 1_2:+60054430 | None:intergenic |
| CCACGATCCAAATGGTAACC+AGG | 0.549111 | 1_2:+60054438 | None:intergenic |
| CTCTCTGGATGCTCTGCGGG+TGG | 0.556169 | 1_2:-60053475 | Msa0081490:CDS |
| GAAAGTCAAATACCATTCAC+AGG | 0.558058 | 1_2:-60054125 | Msa0081490:CDS |
| GGAGCTGATTCCAAAGGAGC+TGG | 0.563677 | 1_2:-60055122 | Msa0081490:intron |
| AAGTGTTGTGTCAGATCCAG+AGG | 0.564410 | 1_2:+60055220 | None:intergenic |
| ATGTCTCCTGTCTCTCAGAC+TGG | 0.564494 | 1_2:+60052207 | None:intergenic |
| GCAGTCATTCCAAGAGCCAA+GGG | 0.566026 | 1_2:+60052519 | None:intergenic |
| AGAGTGAGGTCTACCATATG+AGG | 0.570471 | 1_2:+60055152 | None:intergenic |
| GTGCTTCTTTCCTCAGAATG+TGG | 0.572227 | 1_2:-60052767 | Msa0081490:CDS |
| ACATGTTCGACCACATTCTG+AGG | 0.577838 | 1_2:+60052757 | None:intergenic |
| CCTTCTCTCTGGATGCTCTG+CGG | 0.578584 | 1_2:-60053479 | Msa0081490:CDS |
| TGCTGGAGACAGTGAAAATG+AGG | 0.579915 | 1_2:-60053873 | Msa0081490:intron |
| GTCAAATTAAGGTACTGTGA+TGG | 0.583686 | 1_2:-60053905 | Msa0081490:CDS |
| TTGATATACCAACACTCTAT+CGG | 0.587156 | 1_2:+60051771 | None:intergenic |
| CAACAAAATGGACCCAACTT+CGG | 0.599036 | 1_2:-60052879 | Msa0081490:intron |
| TCTCAAATTCAGCTCCTCCA+AGG | 0.601242 | 1_2:-60052469 | Msa0081490:intron |
| ATAGAGGAACTATTGTCTCA+AGG | 0.604252 | 1_2:-60053597 | Msa0081490:CDS |
| CAGCTCCTTGAATGAGAGTG+AGG | 0.609174 | 1_2:+60055138 | None:intergenic |
| AGAGATTGAAAACACCTTGG+AGG | 0.618464 | 1_2:+60052455 | None:intergenic |
| CACCCAAACAAATACAAGGA+GGG | 0.619322 | 1_2:+60051869 | None:intergenic |
| TAGTTGGCTTATTCATCTGG+AGG | 0.619415 | 1_2:-60054397 | Msa0081490:intron |
| TGCTACTACTGATAATAGTG+AGG | 0.620028 | 1_2:+60055323 | None:intergenic |
| AGTCTGAGAGACAGGAGACA+TGG | 0.627603 | 1_2:-60052205 | Msa0081490:CDS |
| ACAATGAGGAATATGTTTGG+AGG | 0.627712 | 1_2:-60053245 | Msa0081490:CDS |
| AATAAACCAGAAGAAAACCC+AGG | 0.629312 | 1_2:-60054092 | Msa0081490:intron |
| AATACACCCAAACAAATACA+AGG | 0.632833 | 1_2:+60051865 | None:intergenic |
| ATTCAAGGAGCTGATTCCAA+AGG | 0.636479 | 1_2:-60055128 | Msa0081490:CDS |
| TGTAGAATTGATATATCTGG+AGG | 0.641221 | 1_2:-60053272 | Msa0081490:intron |
| AATTCCTGTAGGGAGGAGGA+TGG | 0.645908 | 1_2:-60054211 | Msa0081490:intron |
| TCAACGCGGCTTATGACGTG+TGG | 0.674971 | 1_2:-60052714 | Msa0081490:CDS |
| TTATGGCAGCTATTGTCACA+GGG | 0.677243 | 1_2:+60051950 | None:intergenic |
| GCCGCGTTGAGTAGAAACAA+TGG | 0.677618 | 1_2:+60052727 | None:intergenic |
| TATCTGGAGGACGCACAATG+AGG | 0.686282 | 1_2:-60053259 | Msa0081490:CDS |
| CAGTCATTCCAAGAGCCAAG+GGG | 0.695996 | 1_2:+60052520 | None:intergenic |
| ACACCCAAACAAATACAAGG+AGG | 0.699587 | 1_2:+60051868 | None:intergenic |
| AGTCATTCCAAGAGCCAAGG+GGG | 0.704496 | 1_2:+60052521 | None:intergenic |
| ACCATTGTTTCTACTCAACG+CGG | 0.729768 | 1_2:-60052728 | Msa0081490:CDS |
| TATGGCAGCTATTGTCACAG+GGG | 0.750427 | 1_2:+60051951 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTAAAATTATTTTAAAGATT+AGG | + | chr1_2:60054427-60054446 | None:intergenic | 10.0% |
| !! | CTATAAAAAGATATAAACAA+GGG | + | chr1_2:60052366-60052385 | None:intergenic | 15.0% |
| !! | ACTATAAAAAGATATAAACA+AGG | + | chr1_2:60052367-60052386 | None:intergenic | 15.0% |
| !!! | ATATCTTTTTATAGTTACAA+TGG | - | chr1_2:60052372-60052391 | Msa0081490:intron | 15.0% |
| !! | TTTAATTAATATAATGCTGA+AGG | - | chr1_2:60052471-60052490 | Msa0081490:CDS | 15.0% |
| !!! | AAAGTATTGTTATTAAACTT+TGG | + | chr1_2:60052896-60052915 | None:intergenic | 15.0% |
| !! | TATTTAGTATAATATAGCAT+TGG | - | chr1_2:60054075-60054094 | Msa0081490:intron | 15.0% |
| !! | TGATAAGAATTACAAATTTA+TGG | + | chr1_2:60054111-60054130 | None:intergenic | 15.0% |
| !!! | ATTTTTTAATCAGATAAGAA+TGG | + | chr1_2:60055443-60055462 | None:intergenic | 15.0% |
| !!! | TTTTTGTTTTTCAACTATTG+TGG | + | chr1_2:60051845-60051864 | None:intergenic | 20.0% |
| !!! | TTCTTGATTTGTTTTAAGTA+AGG | + | chr1_2:60051873-60051892 | None:intergenic | 20.0% |
| !! | ATTTCATACAATAACTCAAA+GGG | + | chr1_2:60052232-60052251 | None:intergenic | 20.0% |
| !!! | TTTACTCTTTTTAACACAAT+AGG | + | chr1_2:60052727-60052746 | None:intergenic | 20.0% |
| !! | GTTTAATAACAATACTTTCA+AGG | - | chr1_2:60052898-60052917 | Msa0081490:CDS | 20.0% |
| !!! | TTCTTTATCCTACATAATTT+TGG | - | chr1_2:60053187-60053206 | Msa0081490:intron | 20.0% |
| !!! | TGTTTTAATTGTCATGAATT+TGG | - | chr1_2:60053279-60053298 | Msa0081490:intron | 20.0% |
| !!! | TAGGAATTTTATAGATAAGA+GGG | + | chr1_2:60053431-60053450 | None:intergenic | 20.0% |
| !!! | ATAGGAATTTTATAGATAAG+AGG | + | chr1_2:60053432-60053451 | None:intergenic | 20.0% |
| !!! | AAATCTTAAGGGATTTTAAT+AGG | + | chr1_2:60053450-60053469 | None:intergenic | 20.0% |
| !!! | AAAATCCCTTAAGATTTTTA+TGG | - | chr1_2:60053453-60053472 | Msa0081490:CDS | 20.0% |
| !! | CTAATCAATATATGTATATC+AGG | - | chr1_2:60053749-60053768 | Msa0081490:intron | 20.0% |
| !! | CTTTATCTTGTATTACATTA+AGG | - | chr1_2:60054598-60054617 | Msa0081490:intron | 20.0% |
| ! | AATTTGCATTCTTAGTTTCT+GGG | - | chr1_2:60052002-60052021 | Msa0081490:CDS | 25.0% |
| ! | CATTTCATACAATAACTCAA+AGG | + | chr1_2:60052233-60052252 | None:intergenic | 25.0% |
| ! | AATTCACCAACTAAAGTAAT+GGG | + | chr1_2:60052273-60052292 | None:intergenic | 25.0% |
| ! | AAATTCACCAACTAAAGTAA+TGG | + | chr1_2:60052274-60052293 | None:intergenic | 25.0% |
| ! | TAAAATGTAACCACATATGT+CGG | + | chr1_2:60052570-60052589 | None:intergenic | 25.0% |
| ! | GACTTTCTTCTAAATATAGT+AGG | + | chr1_2:60052945-60052964 | None:intergenic | 25.0% |
| ! | TATATTTAGAAGAAAGTCGA+TGG | - | chr1_2:60052947-60052966 | Msa0081490:intron | 25.0% |
| ! | AACAAATGCCAAAATTATGT+AGG | + | chr1_2:60053198-60053217 | None:intergenic | 25.0% |
| !! | AGGAATTTTATAGATAAGAG+GGG | + | chr1_2:60053430-60053449 | None:intergenic | 25.0% |
| ! | ATTCCAAATGATCAATCTTT+CGG | + | chr1_2:60053545-60053564 | None:intergenic | 25.0% |
| !! | AGTAATATGTGTGTGATTTT+TGG | - | chr1_2:60053574-60053593 | Msa0081490:intron | 25.0% |
| ! | AATTTCGTGGACAAAAAATA+TGG | - | chr1_2:60053623-60053642 | Msa0081490:CDS | 25.0% |
| ! | ACAACAACATAAAGAAACAT+GGG | + | chr1_2:60053704-60053723 | None:intergenic | 25.0% |
| ! | AACAACAACATAAAGAAACA+TGG | + | chr1_2:60053705-60053724 | None:intergenic | 25.0% |
| ! | ATATATAAGTGTCTAGTCAA+TGG | + | chr1_2:60053939-60053958 | None:intergenic | 25.0% |
| ! | TTGTGTAGAATTGATATATC+TGG | - | chr1_2:60053977-60053996 | Msa0081490:intron | 25.0% |
| !! | TGTTTTACGTCTTTGATAAA+AGG | - | chr1_2:60054267-60054286 | Msa0081490:intron | 25.0% |
| ! | CTGATATCAAATATTTGCAA+AGG | + | chr1_2:60054302-60054321 | None:intergenic | 25.0% |
| !! | ATTTTGTTGAGACAACTTTT+TGG | + | chr1_2:60054362-60054381 | None:intergenic | 25.0% |
| ! | AAAAAGTTGTCTCAACAAAA+TGG | - | chr1_2:60054361-60054380 | Msa0081490:intron | 25.0% |
| !! | ACTATCGATTATTTCATCTA+AGG | + | chr1_2:60055146-60055165 | None:intergenic | 25.0% |
| !! | TTGTTTTTCAACTATTGTGG+TGG | + | chr1_2:60051842-60051861 | None:intergenic | 30.0% |
| GAATTTGCATTCTTAGTTTC+TGG | - | chr1_2:60052001-60052020 | Msa0081490:CDS | 30.0% | |
| ATATGAGGTTGCAATGAATT+AGG | + | chr1_2:60052088-60052107 | None:intergenic | 30.0% | |
| TAATTCATTGCAACCTCATA+TGG | - | chr1_2:60052087-60052106 | Msa0081490:intron | 30.0% | |
| AGGGTATAATATTCTATGCA+AGG | + | chr1_2:60052213-60052232 | None:intergenic | 30.0% | |
| ! | AGAGAATCTAAATGATGATG+AGG | + | chr1_2:60052315-60052334 | None:intergenic | 30.0% |
| AACAAGCATAAGAATACTCT+GGG | + | chr1_2:60052674-60052693 | None:intergenic | 30.0% | |
| AAACAAGCATAAGAATACTC+TGG | + | chr1_2:60052675-60052694 | None:intergenic | 30.0% | |
| ! | AAATAGTTGGCTTATTCATC+TGG | - | chr1_2:60052852-60052871 | Msa0081490:intron | 30.0% |
| CTCTTTCTTTAACTATGCTA+TGG | - | chr1_2:60052993-60053012 | Msa0081490:intron | 30.0% | |
| ACACTTTATGAATTCCTGTA+GGG | - | chr1_2:60053031-60053050 | Msa0081490:intron | 30.0% | |
| ! | TTGACTTTCCATGTATTTTG+AGG | + | chr1_2:60053116-60053135 | None:intergenic | 30.0% |
| GTAGGATAAAGAAAATACCT+GGG | + | chr1_2:60053180-60053199 | None:intergenic | 30.0% | |
| TGTAGGATAAAGAAAATACC+TGG | + | chr1_2:60053181-60053200 | None:intergenic | 30.0% | |
| ACTGGAATAGAGTCAAATTA+AGG | - | chr1_2:60053336-60053355 | Msa0081490:intron | 30.0% | |
| ! | TCCCTTAAGATTTTTATGGA+AGG | - | chr1_2:60053457-60053476 | Msa0081490:CDS | 30.0% |
| GCCTTCCATAAAAATCTTAA+GGG | + | chr1_2:60053461-60053480 | None:intergenic | 30.0% | |
| AGCCTTCCATAAAAATCTTA+AGG | + | chr1_2:60053462-60053481 | None:intergenic | 30.0% | |
| !!! | GATTTTTGGTTCTTTTATCC+AGG | - | chr1_2:60053588-60053607 | Msa0081490:CDS | 30.0% |
| TTGTTCAATCTTAATGTTCG+TGG | - | chr1_2:60053720-60053739 | Msa0081490:intron | 30.0% | |
| !! | CACTTCACTTTTGAAGATTT+TGG | + | chr1_2:60053846-60053865 | None:intergenic | 30.0% |
| TGTAGAATTGATATATCTGG+AGG | - | chr1_2:60053980-60053999 | Msa0081490:intron | 30.0% | |
| ACTAATTCTCCTAAAAGCTT+AGG | - | chr1_2:60054203-60054222 | Msa0081490:CDS | 30.0% | |
| !!! | CAGTACTGTTTTGAAATTGT+AGG | - | chr1_2:60054319-60054338 | Msa0081490:intron | 30.0% |
| !! | AACTTTTTGGCAGATTTTTC+TGG | + | chr1_2:60054349-60054368 | None:intergenic | 30.0% |
| !! | ATTTCTGAAGTCTGTTTCAA+AGG | + | chr1_2:60054948-60054967 | None:intergenic | 30.0% |
| GGATTATTCTCTGATAACAA+TGG | + | chr1_2:60055198-60055217 | None:intergenic | 30.0% | |
| AATTGGCTGTATAACAAAAC+AGG | + | chr1_2:60055219-60055238 | None:intergenic | 30.0% | |
| AATACACCCAAACAAATACA+AGG | + | chr1_2:60055390-60055409 | None:intergenic | 30.0% | |
| TTGATATACCAACACTCTAT+CGG | + | chr1_2:60055484-60055503 | None:intergenic | 30.0% | |
| AAAAAAGACAACACACGACA+AGG | - | chr1_2:60051768-60051787 | Msa0081490:three_prime_UTR | 35.0% | |
| AAAAAGACAACACACGACAA+GGG | - | chr1_2:60051769-60051788 | Msa0081490:three_prime_UTR | 35.0% | |
| ! | CTATTGTGGTGGAAACAAAA+AGG | + | chr1_2:60051831-60051850 | None:intergenic | 35.0% |
| TGCTACTACTGATAATAGTG+AGG | + | chr1_2:60051932-60051951 | None:intergenic | 35.0% | |
| ! | TGCAAGGTTCTAATACAAAG+AGG | + | chr1_2:60052197-60052216 | None:intergenic | 35.0% |
| !! | AATGGGTTAGCTTCAAAATG+TGG | + | chr1_2:60052256-60052275 | None:intergenic | 35.0% |
| AGCTAACCCATTACTTTAGT+TGG | - | chr1_2:60052264-60052283 | Msa0081490:CDS | 35.0% | |
| ATGTGCCTTATGTGATATTG+TGG | - | chr1_2:60052423-60052442 | Msa0081490:intron | 35.0% | |
| CACTTCCACAATATCACATA+AGG | + | chr1_2:60052431-60052450 | None:intergenic | 35.0% | |
| CTTATGTGATATTGTGGAAG+TGG | - | chr1_2:60052429-60052448 | Msa0081490:intron | 35.0% | |
| TGTGCATAACTCAAACTCTT+CGG | - | chr1_2:60052507-60052526 | Msa0081490:CDS | 35.0% | |
| ATTCAAATCCACGATCCAAA+TGG | + | chr1_2:60052825-60052844 | None:intergenic | 35.0% | |
| TTGAATCTGGTGCAAATAGT+TGG | - | chr1_2:60052839-60052858 | Msa0081490:intron | 35.0% | |
| GACACTTTATGAATTCCTGT+AGG | - | chr1_2:60053030-60053049 | Msa0081490:intron | 35.0% | |
| TACAGAAAAAAGACTCATCG+TGG | - | chr1_2:60053088-60053107 | Msa0081490:intron | 35.0% | |
| GAAAGTCAAATACCATTCAC+AGG | - | chr1_2:60053127-60053146 | Msa0081490:intron | 35.0% | |
| TTGCTCAATATTCCTGTGAA+TGG | + | chr1_2:60053142-60053161 | None:intergenic | 35.0% | |
| AATAAACCAGAAGAAAACCC+AGG | - | chr1_2:60053160-60053179 | Msa0081490:intron | 35.0% | |
| ! | AAAATACCTGGGTTTTCTTC+TGG | + | chr1_2:60053169-60053188 | None:intergenic | 35.0% |
| ATAAGTTGCAGCATCAATGA+GGG | + | chr1_2:60053244-60053263 | None:intergenic | 35.0% | |
| AAAGAAATCTGTGCATGGAA+TGG | + | chr1_2:60053315-60053334 | None:intergenic | 35.0% | |
| CAGTTAAAGAAATCTGTGCA+TGG | + | chr1_2:60053320-60053339 | None:intergenic | 35.0% | |
| CATGCACAGATTTCTTTAAC+TGG | - | chr1_2:60053318-60053337 | Msa0081490:intron | 35.0% | |
| !! | GTCAAATTAAGGTACTGTGA+TGG | - | chr1_2:60053347-60053366 | Msa0081490:intron | 35.0% |
| AGCAATTAACTCAGCACTAA+AGG | + | chr1_2:60053521-60053540 | None:intergenic | 35.0% | |
| CTACCGAAAGATTGATCATT+TGG | - | chr1_2:60053539-60053558 | Msa0081490:intron | 35.0% | |
| ATAGAGGAACTATTGTCTCA+AGG | - | chr1_2:60053655-60053674 | Msa0081490:intron | 35.0% | |
| GAACTCATCACAGTGTATTA+TGG | + | chr1_2:60053811-60053830 | None:intergenic | 35.0% | |
| !! | AAGATTTTGGTAACAAGCTC+TGG | + | chr1_2:60053833-60053852 | None:intergenic | 35.0% |
| ACAATGAGGAATATGTTTGG+AGG | - | chr1_2:60054007-60054026 | Msa0081490:intron | 35.0% | |
| TTGAAGAACTGTGTGGTTAA+TGG | + | chr1_2:60054163-60054182 | None:intergenic | 35.0% | |
| ! | ACTTGACAACCTAAGCTTTT+AGG | + | chr1_2:60054215-60054234 | None:intergenic | 35.0% |
| GAATGAGAATTACCGAAGTT+GGG | + | chr1_2:60054388-60054407 | None:intergenic | 35.0% | |
| TGAATGAGAATTACCGAAGT+TGG | + | chr1_2:60054389-60054408 | None:intergenic | 35.0% | |
| TGCTTCGGATATTCAAAACT+TGG | + | chr1_2:60054454-60054473 | None:intergenic | 35.0% | |
| ACATGAACTATGTTTCCATC+AGG | - | chr1_2:60054677-60054696 | Msa0081490:intron | 35.0% | |
| AGTAGAGATTGAAAACACCT+TGG | + | chr1_2:60054803-60054822 | None:intergenic | 35.0% | |
| TTCTCAAGATCATCTCAAAC+TGG | - | chr1_2:60054992-60055011 | Msa0081490:intron | 35.0% | |
| CAAACCTTGTCATCAATAAG+AGG | + | chr1_2:60055088-60055107 | None:intergenic | 35.0% | |
| !! | CAATAGCTTTGACAACTTCT+CGG | + | chr1_2:60055271-60055290 | None:intergenic | 35.0% |
| CTCTTCTAAACACCAGATTA+TGG | + | chr1_2:60055322-60055341 | None:intergenic | 35.0% | |
| TTCCCTCCTTGTATTTGTTT+GGG | - | chr1_2:60055381-60055400 | Msa0081490:five_prime_UTR | 35.0% | |
| ! | CAATTTTACCGATAGAGTGT+TGG | - | chr1_2:60055473-60055492 | Msa0081490:five_prime_UTR | 35.0% |
| ! | ATTCAAGGAGCTGATTCCAA+AGG | - | chr1_2:60052124-60052143 | Msa0081490:intron | 40.0% |
| ATGTGATATTGTGGAAGTGG+AGG | - | chr1_2:60052432-60052451 | Msa0081490:intron | 40.0% | |
| TCTTATCACCACAGTCTGTT+TGG | - | chr1_2:60052780-60052799 | Msa0081490:intron | 40.0% | |
| AACATTGCCTGGTTACCATT+TGG | - | chr1_2:60052807-60052826 | Msa0081490:intron | 40.0% | |
| TTGGATCGTGGATTTGAATC+TGG | - | chr1_2:60052826-60052845 | Msa0081490:intron | 40.0% | |
| ! | TAGTTGGCTTATTCATCTGG+AGG | - | chr1_2:60052855-60052874 | Msa0081490:intron | 40.0% |
| CTTTATGAATTCCTGTAGGG+AGG | - | chr1_2:60053034-60053053 | Msa0081490:intron | 40.0% | |
| TCGTGGTTCCTCAAAATACA+TGG | - | chr1_2:60053105-60053124 | Msa0081490:intron | 40.0% | |
| CATAAGTTGCAGCATCAATG+AGG | + | chr1_2:60053245-60053264 | None:intergenic | 40.0% | |
| ! | GTTCTTTTATCCAGGCTGAA+GGG | - | chr1_2:60053596-60053615 | Msa0081490:CDS | 40.0% |
| !! | AATATGGCTTGCTGCAATAG+AGG | - | chr1_2:60053639-60053658 | Msa0081490:CDS | 40.0% |
| AGAAACATGGGAAACCTGTT+CGG | + | chr1_2:60053692-60053711 | None:intergenic | 40.0% | |
| ! | GTGAAGTGTTTAAGTGATGC+AGG | - | chr1_2:60053858-60053877 | Msa0081490:intron | 40.0% |
| CGCACAATGAGGAATATGTT+TGG | - | chr1_2:60054004-60054023 | Msa0081490:intron | 40.0% | |
| ! | GTGGTTAATGGTTTGGAATG+TGG | + | chr1_2:60054151-60054170 | None:intergenic | 40.0% |
| GAACTGTGTGGTTAATGGTT+TGG | + | chr1_2:60054158-60054177 | None:intergenic | 40.0% | |
| CCAAAACTTGAAGAACTGTG+TGG | + | chr1_2:60054170-60054189 | None:intergenic | 40.0% | |
| !! | CCACACAGTTCTTCAAGTTT+TGG | - | chr1_2:60054167-60054186 | Msa0081490:CDS | 40.0% |
| ! | AAGCTTAGGTTGTCAAGTGA+AGG | - | chr1_2:60054217-60054236 | Msa0081490:intron | 40.0% |
| CAACAAAATGGACCCAACTT+CGG | - | chr1_2:60054373-60054392 | Msa0081490:intron | 40.0% | |
| !! | ACCATTGTTTCTACTCAACG+CGG | - | chr1_2:60054524-60054543 | Msa0081490:intron | 40.0% |
| AGAGATTGAAAACACCTTGG+AGG | + | chr1_2:60054800-60054819 | None:intergenic | 40.0% | |
| ! | CTCTCCTCTTATTGATGACA+AGG | - | chr1_2:60055081-60055100 | Msa0081490:intron | 40.0% |
| TTATGGCAGCTATTGTCACA+GGG | + | chr1_2:60055305-60055324 | None:intergenic | 40.0% | |
| ATTATGGCAGCTATTGTCAC+AGG | + | chr1_2:60055306-60055325 | None:intergenic | 40.0% | |
| TGACAATAGCTGCCATAATC+TGG | - | chr1_2:60055307-60055326 | Msa0081490:exon | 40.0% | |
| CTTCCCTCCTTGTATTTGTT+TGG | - | chr1_2:60055380-60055399 | Msa0081490:five_prime_UTR | 40.0% | |
| CACCCAAACAAATACAAGGA+GGG | + | chr1_2:60055386-60055405 | None:intergenic | 40.0% | |
| ACACCCAAACAAATACAAGG+AGG | + | chr1_2:60055387-60055406 | None:intergenic | 40.0% | |
| !!! | GAAGCTGCTGCTGATTTTGT+TGG | - | chr1_2:60051973-60051992 | Msa0081490:CDS | 45.0% |
| ! | GTTTCTGGGTTTATCTCCTC+TGG | - | chr1_2:60052016-60052035 | Msa0081490:CDS | 45.0% |
| ! | AAGTGTTGTGTCAGATCCAG+AGG | + | chr1_2:60052035-60052054 | None:intergenic | 45.0% |
| AGAGTGAGGTCTACCATATG+AGG | + | chr1_2:60052103-60052122 | None:intergenic | 45.0% | |
| GTAGACCTCACTCTCATTCA+AGG | - | chr1_2:60052109-60052128 | Msa0081490:intron | 45.0% | |
| CTACACTGACACATAGACAC+TGG | + | chr1_2:60052618-60052637 | None:intergenic | 45.0% | |
| GACATACACAACATGGACAG+CGG | + | chr1_2:60052644-60052663 | None:intergenic | 45.0% | |
| GCTGTCCATGTTGTGTATGT+CGG | - | chr1_2:60052643-60052662 | Msa0081490:intron | 45.0% | |
| !! | AAGCACCGACATACACAACA+TGG | + | chr1_2:60052651-60052670 | None:intergenic | 45.0% |
| ATCACCACAGTCTGTTTGGA+TGG | - | chr1_2:60052784-60052803 | Msa0081490:intron | 45.0% | |
| TGTTCCATCCAAACAGACTG+TGG | + | chr1_2:60052791-60052810 | None:intergenic | 45.0% | |
| TGTTTGGATGGAACATTGCC+TGG | - | chr1_2:60052796-60052815 | Msa0081490:intron | 45.0% | |
| TATGAATTCCTGTAGGGAGG+AGG | - | chr1_2:60053037-60053056 | Msa0081490:intron | 45.0% | |
| TGCTGGAGACAGTGAAAATG+AGG | - | chr1_2:60053379-60053398 | Msa0081490:CDS | 45.0% | |
| ! | GGTTCTTTTATCCAGGCTGA+AGG | - | chr1_2:60053595-60053614 | Msa0081490:CDS | 45.0% |
| ! | TGGAGGTGTAGTTCAGTTAC+AGG | - | chr1_2:60054024-60054043 | Msa0081490:intron | 45.0% |
| ! | CATTCTGAGGAAAGAAGCAC+TGG | + | chr1_2:60054485-60054504 | None:intergenic | 45.0% |
| GTGCTTCTTTCCTCAGAATG+TGG | - | chr1_2:60054485-60054504 | Msa0081490:intron | 45.0% | |
| ACATGTTCGACCACATTCTG+AGG | + | chr1_2:60054498-60054517 | None:intergenic | 45.0% | |
| TCTCAAATTCAGCTCCTCCA+AGG | - | chr1_2:60054783-60054802 | Msa0081490:intron | 45.0% | |
| TCTCCAACAGCAACTGCAAT+TGG | + | chr1_2:60055236-60055255 | None:intergenic | 45.0% | |
| AGCTATTGTCACAGGGGTAA+GGG | + | chr1_2:60055298-60055317 | None:intergenic | 45.0% | |
| TATGGCAGCTATTGTCACAG+GGG | + | chr1_2:60055304-60055323 | None:intergenic | 45.0% | |
| CAGCTCCTTGAATGAGAGTG+AGG | + | chr1_2:60052117-60052136 | None:intergenic | 50.0% | |
| GAGAGAGATACCAGCTCCTT+TGG | + | chr1_2:60052143-60052162 | None:intergenic | 50.0% | |
| CGACATCTCACCGACATATG+TGG | - | chr1_2:60052557-60052576 | Msa0081490:intron | 50.0% | |
| CCACGATCCAAATGGTAACC+AGG | + | chr1_2:60052817-60052836 | None:intergenic | 50.0% | |
| CCTGGTTACCATTTGGATCG+TGG | - | chr1_2:60052814-60052833 | Msa0081490:intron | 50.0% | |
| AATTCCTGTAGGGAGGAGGA+TGG | - | chr1_2:60053041-60053060 | Msa0081490:intron | 50.0% | |
| !! | TGTGATGGAGCGTCTTTTGC+TGG | - | chr1_2:60053362-60053381 | Msa0081490:intron | 50.0% |
| GAAATTGAAGCCCTTCAGCC+TGG | + | chr1_2:60053609-60053628 | None:intergenic | 50.0% | |
| GCTGAAGGGCTTCAATTTCG+TGG | - | chr1_2:60053610-60053629 | Msa0081490:CDS | 50.0% | |
| AGGAATGCAGAATGCCGAAC+AGG | - | chr1_2:60053675-60053694 | Msa0081490:intron | 50.0% | |
| GTATATCAGGCCCTTCTCTC+TGG | - | chr1_2:60053762-60053781 | Msa0081490:intron | 50.0% | |
| TATCTGGAGGACGCACAATG+AGG | - | chr1_2:60053993-60054012 | Msa0081490:intron | 50.0% | |
| GCACTGGACGAAACATGCTT+CGG | + | chr1_2:60054469-60054488 | None:intergenic | 50.0% | |
| GCCGCGTTGAGTAGAAACAA+TGG | + | chr1_2:60054528-60054547 | None:intergenic | 50.0% | |
| ATGACGTGTGGCAGGTAACA+TGG | - | chr1_2:60054550-60054569 | Msa0081490:intron | 50.0% | |
| !! | CTAAACTGGCTTGGACCTGA+TGG | + | chr1_2:60054695-60054714 | None:intergenic | 50.0% |
| !! | TCTTTGGGGCTAAACTGGCT+TGG | + | chr1_2:60054704-60054723 | None:intergenic | 50.0% |
| !! | AGCTGTCTTTGGGGCTAAAC+TGG | + | chr1_2:60054709-60054728 | None:intergenic | 50.0% |
| AGTCATTCCAAGAGCCAAGG+GGG | + | chr1_2:60054734-60054753 | None:intergenic | 50.0% | |
| CAGTCATTCCAAGAGCCAAG+GGG | + | chr1_2:60054735-60054754 | None:intergenic | 50.0% | |
| GCAGTCATTCCAAGAGCCAA+GGG | + | chr1_2:60054736-60054755 | None:intergenic | 50.0% | |
| TGCAGTCATTCCAAGAGCCA+AGG | + | chr1_2:60054737-60054756 | None:intergenic | 50.0% | |
| TCATTGCCAGTCTGAGAGAC+AGG | - | chr1_2:60055039-60055058 | Msa0081490:intron | 50.0% | |
| ATGTCTCCTGTCTCTCAGAC+TGG | + | chr1_2:60055048-60055067 | None:intergenic | 50.0% | |
| AGTCTGAGAGACAGGAGACA+TGG | - | chr1_2:60055047-60055066 | Msa0081490:intron | 50.0% | |
| CAGCCAATTGCAGTTGCTGT+TGG | - | chr1_2:60055230-60055249 | Msa0081490:CDS | 50.0% | |
| ! | TTGCAGTTGCTGTTGGAGAC+TGG | - | chr1_2:60055237-60055256 | Msa0081490:CDS | 50.0% |
| CAGCTATTGTCACAGGGGTA+AGG | + | chr1_2:60055299-60055318 | None:intergenic | 50.0% | |
| ! | GGAGCTGATTCCAAAGGAGC+TGG | - | chr1_2:60052130-60052149 | Msa0081490:intron | 55.0% |
| ! | CGCAGAGCATCCAGAGAGAA+GGG | + | chr1_2:60053775-60053794 | None:intergenic | 55.0% |
| CCTTCTCTCTGGATGCTCTG+CGG | - | chr1_2:60053773-60053792 | Msa0081490:intron | 55.0% | |
| CTTCTCTCTGGATGCTCTGC+GGG | - | chr1_2:60053774-60053793 | Msa0081490:intron | 55.0% | |
| TCAACGCGGCTTATGACGTG+TGG | - | chr1_2:60054538-60054557 | Msa0081490:intron | 55.0% | |
| AAGGGGGTCAGCTGTCTTTG+GGG | + | chr1_2:60054718-60054737 | None:intergenic | 55.0% | |
| CAAGGGGGTCAGCTGTCTTT+GGG | + | chr1_2:60054719-60054738 | None:intergenic | 55.0% | |
| CACACCATCCTCCTCCCTAC+AGG | + | chr1_2:60053048-60053067 | None:intergenic | 60.0% | |
| ! | CCGCAGAGCATCCAGAGAGA+AGG | + | chr1_2:60053776-60053795 | None:intergenic | 60.0% |
| CCAAGGGGGTCAGCTGTCTT+TGG | + | chr1_2:60054720-60054739 | None:intergenic | 60.0% | |
| CCAAAGACAGCTGACCCCCT+TGG | - | chr1_2:60054717-60054736 | Msa0081490:intron | 60.0% | |
| CTCTCTGGATGCTCTGCGGG+TGG | - | chr1_2:60053777-60053796 | Msa0081490:intron | 65.0% | |
| CGCGGCTTATGACGTGTGGC+AGG | - | chr1_2:60054542-60054561 | Msa0081490:intron | 65.0% | |
| ! | CAGCTGACCCCCTTGGCTCT+TGG | - | chr1_2:60054724-60054743 | Msa0081490:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 60051731 | 60055543 | 60051731 | ID=Msa0081490;Name=Msa0081490 |
| chr1_2 | mRNA | 60051731 | 60055543 | 60051731 | ID=Msa0081490-mRNA-1;Parent=Msa0081490;Name=Msa0081490-mRNA-1;_AED=0.15;_eAED=0.15;_QI=234|1|1|1|1|1|12|197|414 |
| chr1_2 | exon | 60051731 | 60052041 | 60051731 | ID=Msa0081490-mRNA-1:exon:19556;Parent=Msa0081490-mRNA-1 |
| chr1_2 | exon | 60052172 | 60052317 | 60052172 | ID=Msa0081490-mRNA-1:exon:19555;Parent=Msa0081490-mRNA-1 |
| chr1_2 | exon | 60052470 | 60052575 | 60052470 | ID=Msa0081490-mRNA-1:exon:19554;Parent=Msa0081490-mRNA-1 |
| chr1_2 | exon | 60052711 | 60052788 | 60052711 | ID=Msa0081490-mRNA-1:exon:19553;Parent=Msa0081490-mRNA-1 |
| chr1_2 | exon | 60052880 | 60052933 | 60052880 | ID=Msa0081490-mRNA-1:exon:19552;Parent=Msa0081490-mRNA-1 |
| chr1_2 | exon | 60053229 | 60053289 | 60053229 | ID=Msa0081490-mRNA-1:exon:19551;Parent=Msa0081490-mRNA-1 |
| chr1_2 | exon | 60053379 | 60053503 | 60053379 | ID=Msa0081490-mRNA-1:exon:19550;Parent=Msa0081490-mRNA-1 |
| chr1_2 | exon | 60053578 | 60053664 | 60053578 | ID=Msa0081490-mRNA-1:exon:19549;Parent=Msa0081490-mRNA-1 |
| chr1_2 | exon | 60053874 | 60053947 | 60053874 | ID=Msa0081490-mRNA-1:exon:19548;Parent=Msa0081490-mRNA-1 |
| chr1_2 | exon | 60054093 | 60054222 | 60054093 | ID=Msa0081490-mRNA-1:exon:19547;Parent=Msa0081490-mRNA-1 |
| chr1_2 | exon | 60054398 | 60054480 | 60054398 | ID=Msa0081490-mRNA-1:exon:19546;Parent=Msa0081490-mRNA-1 |
| chr1_2 | exon | 60055123 | 60055543 | 60055123 | ID=Msa0081490-mRNA-1:exon:19545;Parent=Msa0081490-mRNA-1 |
| chr1_2 | five_prime_UTR | 60055310 | 60055543 | 60055310 | ID=Msa0081490-mRNA-1:five_prime_utr;Parent=Msa0081490-mRNA-1 |
| chr1_2 | CDS | 60055123 | 60055309 | 60055123 | ID=Msa0081490-mRNA-1:cds;Parent=Msa0081490-mRNA-1 |
| chr1_2 | CDS | 60054398 | 60054480 | 60054398 | ID=Msa0081490-mRNA-1:cds;Parent=Msa0081490-mRNA-1 |
| chr1_2 | CDS | 60054093 | 60054222 | 60054093 | ID=Msa0081490-mRNA-1:cds;Parent=Msa0081490-mRNA-1 |
| chr1_2 | CDS | 60053874 | 60053947 | 60053874 | ID=Msa0081490-mRNA-1:cds;Parent=Msa0081490-mRNA-1 |
| chr1_2 | CDS | 60053578 | 60053664 | 60053578 | ID=Msa0081490-mRNA-1:cds;Parent=Msa0081490-mRNA-1 |
| chr1_2 | CDS | 60053379 | 60053503 | 60053379 | ID=Msa0081490-mRNA-1:cds;Parent=Msa0081490-mRNA-1 |
| chr1_2 | CDS | 60053229 | 60053289 | 60053229 | ID=Msa0081490-mRNA-1:cds;Parent=Msa0081490-mRNA-1 |
| chr1_2 | CDS | 60052880 | 60052933 | 60052880 | ID=Msa0081490-mRNA-1:cds;Parent=Msa0081490-mRNA-1 |
| chr1_2 | CDS | 60052711 | 60052788 | 60052711 | ID=Msa0081490-mRNA-1:cds;Parent=Msa0081490-mRNA-1 |
| chr1_2 | CDS | 60052470 | 60052575 | 60052470 | ID=Msa0081490-mRNA-1:cds;Parent=Msa0081490-mRNA-1 |
| chr1_2 | CDS | 60052172 | 60052317 | 60052172 | ID=Msa0081490-mRNA-1:cds;Parent=Msa0081490-mRNA-1 |
| chr1_2 | CDS | 60051928 | 60052041 | 60051928 | ID=Msa0081490-mRNA-1:cds;Parent=Msa0081490-mRNA-1 |
| chr1_2 | three_prime_UTR | 60051731 | 60051927 | 60051731 | ID=Msa0081490-mRNA-1:three_prime_utr;Parent=Msa0081490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
