Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173650 | XP_013469132.1 | 95.652 | 414 | 9 | 3 | 1 | 414 | 1 | 405 | 0.0 | 812 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173650 | sp|F4I839|PAE2_ARATH | 63.333 | 420 | 144 | 2 | 2 | 413 | 27 | 444 | 0.0 | 574 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173650 | A0A072VYL4 | 95.652 | 414 | 9 | 3 | 1 | 414 | 1 | 405 | 0.0 | 812 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0019640 | Msa0173650 | 0.818107 | 2.329605e-52 | -8.615850e-47 |
| Msa0034280 | Msa0173650 | 0.836858 | 7.315760e-57 | -8.615850e-47 |
| Msa0081350 | Msa0173650 | 0.996693 | 6.601034e-231 | -8.615850e-47 |
| Msa0081490 | Msa0173650 | 0.927125 | 1.815292e-91 | -8.615850e-47 |
| Msa0173650 | Msa1003020 | 0.902047 | 1.444064e-78 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173650 | MtrunA17_Chr1g0193761 | 95.652 | 414 | 9 | 3 | 1 | 414 | 1 | 405 | 0.0 | 812 |
| Msa0173650 | MtrunA17_Chr7g0270931 | 73.671 | 414 | 103 | 2 | 2 | 411 | 3 | 414 | 0.0 | 654 |
| Msa0173650 | MtrunA17_Chr1g0193381 | 68.123 | 389 | 122 | 1 | 26 | 412 | 28 | 416 | 0.0 | 587 |
| Msa0173650 | MtrunA17_Chr7g0271231 | 71.311 | 366 | 105 | 0 | 46 | 411 | 53 | 418 | 0.0 | 581 |
| Msa0173650 | MtrunA17_Chr4g0069571 | 63.007 | 419 | 140 | 4 | 1 | 411 | 9 | 420 | 0.0 | 553 |
| Msa0173650 | MtrunA17_Chr5g0408881 | 53.867 | 362 | 165 | 1 | 49 | 408 | 29 | 390 | 5.38e-153 | 440 |
| Msa0173650 | MtrunA17_Chr7g0238491 | 50.000 | 406 | 192 | 4 | 15 | 414 | 28 | 428 | 1.19e-147 | 426 |
| Msa0173650 | MtrunA17_Chr8g0369681 | 49.730 | 370 | 184 | 1 | 45 | 412 | 23 | 392 | 2.42e-146 | 422 |
| Msa0173650 | MtrunA17_Chr8g0369651 | 49.589 | 365 | 182 | 1 | 49 | 411 | 28 | 392 | 4.77e-146 | 420 |
| Msa0173650 | MtrunA17_Chr1g0203101 | 54.768 | 367 | 161 | 3 | 49 | 410 | 39 | 405 | 5.92e-146 | 421 |
| Msa0173650 | MtrunA17_Chr1g0203121 | 54.223 | 367 | 163 | 3 | 49 | 410 | 39 | 405 | 7.61e-143 | 413 |
| Msa0173650 | MtrunA17_Chr5g0418101 | 49.041 | 365 | 180 | 2 | 48 | 410 | 41 | 401 | 1.37e-135 | 394 |
| Msa0173650 | MtrunA17_Chr1g0163701 | 49.515 | 103 | 52 | 0 | 229 | 331 | 270 | 372 | 6.99e-28 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0173650 | AT1G57590.1 | 63.333 | 420 | 144 | 2 | 2 | 413 | 27 | 444 | 0.0 | 574 |
| Msa0173650 | AT5G26670.1 | 63.876 | 418 | 134 | 2 | 7 | 412 | 4 | 416 | 0.0 | 567 |
| Msa0173650 | AT3G62060.2 | 63.981 | 422 | 135 | 5 | 3 | 411 | 1 | 418 | 0.0 | 566 |
| Msa0173650 | AT3G05910.1 | 68.733 | 371 | 115 | 1 | 42 | 412 | 46 | 415 | 0.0 | 566 |
| Msa0173650 | AT3G62060.1 | 63.981 | 422 | 135 | 5 | 3 | 411 | 1 | 418 | 0.0 | 565 |
| Msa0173650 | AT2G46930.1 | 63.549 | 417 | 144 | 3 | 3 | 412 | 1 | 416 | 0.0 | 560 |
| Msa0173650 | AT4G19420.1 | 56.438 | 365 | 157 | 1 | 49 | 411 | 25 | 389 | 5.89e-161 | 459 |
| Msa0173650 | AT4G19420.2 | 56.438 | 365 | 157 | 1 | 49 | 411 | 25 | 389 | 5.89e-161 | 459 |
| Msa0173650 | AT5G26670.3 | 66.779 | 298 | 99 | 0 | 115 | 412 | 1 | 298 | 3.46e-157 | 445 |
| Msa0173650 | AT5G26670.2 | 66.779 | 298 | 99 | 0 | 115 | 412 | 1 | 298 | 3.46e-157 | 445 |
| Msa0173650 | AT5G26670.4 | 66.779 | 298 | 99 | 0 | 115 | 412 | 1 | 298 | 3.46e-157 | 445 |
| Msa0173650 | AT4G19420.4 | 51.750 | 400 | 156 | 2 | 49 | 411 | 25 | 424 | 6.61e-154 | 442 |
| Msa0173650 | AT5G23870.2 | 55.163 | 368 | 159 | 4 | 49 | 410 | 35 | 402 | 9.73e-154 | 442 |
| Msa0173650 | AT5G23870.1 | 55.163 | 368 | 159 | 4 | 49 | 410 | 35 | 402 | 9.86e-154 | 441 |
| Msa0173650 | AT5G23870.4 | 55.163 | 368 | 159 | 4 | 49 | 410 | 35 | 402 | 9.86e-154 | 441 |
| Msa0173650 | AT5G23870.3 | 55.163 | 368 | 159 | 4 | 49 | 410 | 35 | 402 | 1.18e-153 | 442 |
| Msa0173650 | AT1G09550.1 | 55.000 | 360 | 157 | 3 | 31 | 390 | 28 | 382 | 7.16e-150 | 430 |
| Msa0173650 | AT3G09410.1 | 50.000 | 400 | 193 | 2 | 15 | 411 | 31 | 426 | 7.74e-149 | 429 |
| Msa0173650 | AT3G05910.2 | 68.582 | 261 | 81 | 1 | 43 | 303 | 47 | 306 | 3.07e-136 | 393 |
| Msa0173650 | AT3G09405.1 | 48.294 | 381 | 191 | 3 | 29 | 406 | 32 | 409 | 3.65e-136 | 396 |
| Msa0173650 | AT4G19410.1 | 47.645 | 361 | 186 | 2 | 49 | 406 | 24 | 384 | 7.03e-135 | 392 |
| Msa0173650 | AT5G45280.2 | 46.814 | 361 | 189 | 2 | 49 | 406 | 24 | 384 | 9.66e-133 | 387 |
| Msa0173650 | AT3G09410.3 | 48.634 | 366 | 181 | 2 | 15 | 377 | 31 | 392 | 1.70e-129 | 379 |
| Msa0173650 | AT4G19410.2 | 47.965 | 344 | 177 | 1 | 49 | 390 | 24 | 367 | 4.17e-128 | 379 |
| Msa0173650 | AT3G09405.2 | 48.845 | 303 | 150 | 2 | 107 | 406 | 2 | 302 | 2.63e-109 | 324 |
| Msa0173650 | AT5G45280.1 | 49.474 | 285 | 142 | 1 | 49 | 331 | 24 | 308 | 9.47e-109 | 325 |
| Msa0173650 | AT4G19420.3 | 59.817 | 219 | 86 | 1 | 49 | 265 | 25 | 243 | 1.00e-93 | 284 |
Find 95 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTTGCATTCTTAGTTTC+TGG | 0.113356 | 1_4:+58980667 | Msa0173650:CDS |
| CTTCCCTCCTTGTATTTGTT+TGG | 0.210251 | 1_4:+58984041 | Msa0173650:three_prime_UTR |
| GAACTCATCACAGTGTATTA+TGG | 0.279288 | 1_4:-58982469 | None:intergenic |
| CATGCACAGATTTCTTTAAC+TGG | 0.280335 | 1_4:+58981979 | Msa0173650:intron |
| AATTTGCATTCTTAGTTTCT+GGG | 0.281723 | 1_4:+58980668 | Msa0173650:CDS |
| AGCTGTCTTTGGGGCTAAAC+TGG | 0.296500 | 1_4:-58983367 | None:intergenic |
| ACTGGAATAGAGTCAAATTA+AGG | 0.300173 | 1_4:+58981997 | Msa0173650:CDS |
| TTCCCTCCTTGTATTTGTTT+GGG | 0.304087 | 1_4:+58984042 | Msa0173650:three_prime_UTR |
| TGGAGGTGTAGTTCAGTTAC+AGG | 0.319230 | 1_4:+58982685 | Msa0173650:CDS |
| GTTTCTGGGTTTATCTCCTC+TGG | 0.329452 | 1_4:+58980682 | Msa0173650:CDS |
| TCTTATCACCACAGTCTGTT+TGG | 0.333070 | 1_4:+58981441 | Msa0173650:intron |
| ATATGAGGTTGCAATGAATT+AGG | 0.345810 | 1_4:-58980751 | None:intergenic |
| AACATTGCCTGGTTACCATT+TGG | 0.363625 | 1_4:+58981468 | Msa0173650:CDS |
| GAGAGAGATACCAGCTCCTT+TGG | 0.363704 | 1_4:-58980806 | None:intergenic |
| CTCTTCTAAACACCAGATTA+TGG | 0.376863 | 1_4:-58983980 | None:intergenic |
| GTATATCAGGCCCTTCTCTC+TGG | 0.378444 | 1_4:+58982423 | Msa0173650:intron |
| TTCTGCATTGAATAGCAAAA+TGG | 0.379784 | 1_4:+58984182 | Msa0173650:three_prime_UTR |
| CTTCTCTCTGGATGCTCTGC+GGG | 0.380263 | 1_4:+58982435 | Msa0173650:CDS |
| CTATTGTGGTGGAAACAAAA+AGG | 0.388388 | 1_4:-58980486 | None:intergenic |
| TTGTGTAGAATTGATATATC+TGG | 0.393324 | 1_4:+58982638 | Msa0173650:intron |
| TTGGATCGTGGATTTGAATC+TGG | 0.394258 | 1_4:+58981487 | Msa0173650:CDS |
| CAATAGCTTTGACAACTTCT+CGG | 0.399277 | 1_4:-58983929 | None:intergenic |
| TGAATGAGAATTACCGAAGT+TGG | 0.402427 | 1_4:-58983047 | None:intergenic |
| TAATTCATTGCAACCTCATA+TGG | 0.405524 | 1_4:+58980753 | Msa0173650:CDS |
| TTGCTCAATATTCCTGTGAA+TGG | 0.409923 | 1_4:-58981800 | None:intergenic |
| TGACAATAGCTGCCATAATC+TGG | 0.419500 | 1_4:+58983968 | Msa0173650:CDS |
| TCTCCAACAGCAACTGCAAT+TGG | 0.422862 | 1_4:-58983894 | None:intergenic |
| CGCACAATGAGGAATATGTT+TGG | 0.429123 | 1_4:+58982665 | Msa0173650:CDS |
| TTCTCAAGATCATCTCAAAC+TGG | 0.432587 | 1_4:+58983653 | Msa0173650:CDS |
| GTGAAGTGTTTAAGTGATGC+AGG | 0.433309 | 1_4:+58982519 | Msa0173650:CDS |
| TTGAATCTGGTGCAAATAGT+TGG | 0.437940 | 1_4:+58981500 | Msa0173650:CDS |
| TCTTTGGGGCTAAACTGGCT+TGG | 0.447959 | 1_4:-58983362 | None:intergenic |
| AAATAGTTGGCTTATTCATC+TGG | 0.452603 | 1_4:+58981513 | Msa0173650:CDS |
| AATATGGCTTGCTGCAATAG+AGG | 0.452909 | 1_4:+58982300 | Msa0173650:CDS |
| CAAACCTTGTCATCAATAAG+AGG | 0.455553 | 1_4:-58983746 | None:intergenic |
| CAGCTATTGTCACAGGGGTA+AGG | 0.457583 | 1_4:-58983957 | None:intergenic |
| CTCTCCTCTTATTGATGACA+AGG | 0.463103 | 1_4:+58983742 | Msa0173650:CDS |
| AGGAATGCAGAATGCCGAAC+AGG | 0.466856 | 1_4:+58982336 | Msa0173650:CDS |
| GTAGACCTCACTCTCATTCA+AGG | 0.469696 | 1_4:+58980775 | Msa0173650:CDS |
| GAATGAGAATTACCGAAGTT+GGG | 0.474842 | 1_4:-58983046 | None:intergenic |
| ATCACCACAGTCTGTTTGGA+TGG | 0.477109 | 1_4:+58981445 | Msa0173650:intron |
| GCTGAAGGGCTTCAATTTCG+TGG | 0.477342 | 1_4:+58982271 | Msa0173650:CDS |
| TGTTTGGATGGAACATTGCC+TGG | 0.481213 | 1_4:+58981457 | Msa0173650:CDS |
| CAGCCAATTGCAGTTGCTGT+TGG | 0.488140 | 1_4:+58983891 | Msa0173650:intron |
| CGCAGAGCATCCAGAGAGAA+GGG | 0.499707 | 1_4:-58982433 | None:intergenic |
| CGCGGCTTATGACGTGTGGC+AGG | 0.504914 | 1_4:+58983203 | Msa0173650:CDS |
| CCGCAGAGCATCCAGAGAGA+AGG | 0.509186 | 1_4:-58982434 | None:intergenic |
| CCTGGTTACCATTTGGATCG+TGG | 0.510305 | 1_4:+58981475 | Msa0173650:CDS |
| TTGCAGTTGCTGTTGGAGAC+TGG | 0.515469 | 1_4:+58983898 | Msa0173650:CDS |
| AGAAACATGGGAAACCTGTT+CGG | 0.515752 | 1_4:-58982350 | None:intergenic |
| TCATTGCCAGTCTGAGAGAC+AGG | 0.517916 | 1_4:+58983700 | Msa0173650:CDS |
| ATTATGGCAGCTATTGTCAC+AGG | 0.520288 | 1_4:-58983964 | None:intergenic |
| TATGAATTCCTGTAGGGAGG+AGG | 0.530218 | 1_4:+58981698 | Msa0173650:intron |
| TCGTGGTTCCTCAAAATACA+TGG | 0.531611 | 1_4:+58981766 | Msa0173650:CDS |
| AGCTATTGTCACAGGGGTAA+GGG | 0.533131 | 1_4:-58983956 | None:intergenic |
| TGCAGTCATTCCAAGAGCCA+AGG | 0.540000 | 1_4:-58983395 | None:intergenic |
| ATTCAAATCCACGATCCAAA+TGG | 0.544072 | 1_4:-58981483 | None:intergenic |
| CCACGATCCAAATGGTAACC+AGG | 0.549111 | 1_4:-58981475 | None:intergenic |
| CTCTCTGGATGCTCTGCGGG+TGG | 0.556169 | 1_4:+58982438 | Msa0173650:CDS |
| GAAAGTCAAATACCATTCAC+AGG | 0.558058 | 1_4:+58981788 | Msa0173650:CDS |
| GGAGCTGATTCCAAAGGAGC+TGG | 0.563677 | 1_4:+58980796 | Msa0173650:CDS |
| AAGTGTTGTGTCAGATCCAG+AGG | 0.564410 | 1_4:-58980698 | None:intergenic |
| ATGTCTCCTGTCTCTCAGAC+TGG | 0.564494 | 1_4:-58983706 | None:intergenic |
| GCAGTCATTCCAAGAGCCAA+GGG | 0.566026 | 1_4:-58983394 | None:intergenic |
| AGAGTGAGGTCTACCATATG+AGG | 0.570471 | 1_4:-58980766 | None:intergenic |
| GTGCTTCTTTCCTCAGAATG+TGG | 0.572227 | 1_4:+58983146 | Msa0173650:intron |
| ACATGTTCGACCACATTCTG+AGG | 0.577838 | 1_4:-58983156 | None:intergenic |
| CCTTCTCTCTGGATGCTCTG+CGG | 0.578584 | 1_4:+58982434 | Msa0173650:CDS |
| TGCTGGAGACAGTGAAAATG+AGG | 0.579915 | 1_4:+58982040 | Msa0173650:CDS |
| GTCAAATTAAGGTACTGTGA+TGG | 0.583686 | 1_4:+58982008 | Msa0173650:CDS |
| TTGATATACCAACACTCTAT+CGG | 0.587156 | 1_4:-58984142 | None:intergenic |
| CAACAAAATGGACCCAACTT+CGG | 0.599036 | 1_4:+58983034 | Msa0173650:CDS |
| TCTCAAATTCAGCTCCTCCA+AGG | 0.601242 | 1_4:+58983444 | Msa0173650:CDS |
| ATAGAGGAACTATTGTCTCA+AGG | 0.604252 | 1_4:+58982316 | Msa0173650:CDS |
| CAGCTCCTTGAATGAGAGTG+AGG | 0.609174 | 1_4:-58980780 | None:intergenic |
| AGAGATTGAAAACACCTTGG+AGG | 0.618464 | 1_4:-58983458 | None:intergenic |
| CACCCAAACAAATACAAGGA+GGG | 0.619322 | 1_4:-58984044 | None:intergenic |
| TAGTTGGCTTATTCATCTGG+AGG | 0.619415 | 1_4:+58981516 | Msa0173650:CDS |
| TGCTACTACTGATAATAGTG+AGG | 0.620028 | 1_4:-58980587 | None:intergenic |
| AGTCTGAGAGACAGGAGACA+TGG | 0.627603 | 1_4:+58983708 | Msa0173650:CDS |
| ACAATGAGGAATATGTTTGG+AGG | 0.627712 | 1_4:+58982668 | Msa0173650:CDS |
| AATAAACCAGAAGAAAACCC+AGG | 0.629312 | 1_4:+58981821 | Msa0173650:CDS |
| AATACACCCAAACAAATACA+AGG | 0.632833 | 1_4:-58984048 | None:intergenic |
| ATTCAAGGAGCTGATTCCAA+AGG | 0.636479 | 1_4:+58980790 | Msa0173650:CDS |
| TGTAGAATTGATATATCTGG+AGG | 0.641221 | 1_4:+58982641 | Msa0173650:intron |
| AATTCCTGTAGGGAGGAGGA+TGG | 0.645908 | 1_4:+58981702 | Msa0173650:intron |
| TCAACGCGGCTTATGACGTG+TGG | 0.674971 | 1_4:+58983199 | Msa0173650:CDS |
| TTATGGCAGCTATTGTCACA+GGG | 0.677243 | 1_4:-58983963 | None:intergenic |
| GCCGCGTTGAGTAGAAACAA+TGG | 0.677618 | 1_4:-58983186 | None:intergenic |
| TATCTGGAGGACGCACAATG+AGG | 0.686282 | 1_4:+58982654 | Msa0173650:CDS |
| CAGTCATTCCAAGAGCCAAG+GGG | 0.695996 | 1_4:-58983393 | None:intergenic |
| ACACCCAAACAAATACAAGG+AGG | 0.699587 | 1_4:-58984045 | None:intergenic |
| AGTCATTCCAAGAGCCAAGG+GGG | 0.704496 | 1_4:-58983392 | None:intergenic |
| ACCATTGTTTCTACTCAACG+CGG | 0.729768 | 1_4:+58983185 | Msa0173650:CDS |
| TATGGCAGCTATTGTCACAG+GGG | 0.750427 | 1_4:-58983962 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTAAAATTATTTTAAAGATT+AGG | - | chr1_4:58983088-58983107 | None:intergenic | 10.0% |
| !! | CTATAAAAAGATATAAACAA+GGG | - | chr1_4:58981030-58981049 | None:intergenic | 15.0% |
| !! | ACTATAAAAAGATATAAACA+AGG | - | chr1_4:58981031-58981050 | None:intergenic | 15.0% |
| !!! | ATATCTTTTTATAGTTACAA+TGG | + | chr1_4:58981036-58981055 | Msa0173650:intron | 15.0% |
| !! | TTTAATTAATATAATGCTGA+AGG | + | chr1_4:58981132-58981151 | Msa0173650:intron | 15.0% |
| !!! | AAAGTATTGTTATTAAACTT+TGG | - | chr1_4:58981557-58981576 | None:intergenic | 15.0% |
| !! | TATTTAGTATAATATAGCAT+TGG | + | chr1_4:58982736-58982755 | Msa0173650:intron | 15.0% |
| !! | TGATAAGAATTACAAATTTA+TGG | - | chr1_4:58982772-58982791 | None:intergenic | 15.0% |
| !!! | ATTTTTTAATCAGATAAGAA+TGG | - | chr1_4:58984104-58984123 | None:intergenic | 15.0% |
| !!! | TTTTTGTTTTTCAACTATTG+TGG | - | chr1_4:58980503-58980522 | None:intergenic | 20.0% |
| !!! | TTCTTGATTTGTTTTAAGTA+AGG | - | chr1_4:58980531-58980550 | None:intergenic | 20.0% |
| !! | ATTTCATACAATAACTCAAA+GGG | - | chr1_4:58980898-58980917 | None:intergenic | 20.0% |
| !!! | TTTACTCTTTTTAACACAAT+AGG | - | chr1_4:58981388-58981407 | None:intergenic | 20.0% |
| !! | GTTTAATAACAATACTTTCA+AGG | + | chr1_4:58981559-58981578 | Msa0173650:intron | 20.0% |
| !!! | TTCTTTATCCTACATAATTT+TGG | + | chr1_4:58981848-58981867 | Msa0173650:intron | 20.0% |
| !!! | TGTTTTAATTGTCATGAATT+TGG | + | chr1_4:58981940-58981959 | Msa0173650:intron | 20.0% |
| !!! | TAGGAATTTTATAGATAAGA+GGG | - | chr1_4:58982092-58982111 | None:intergenic | 20.0% |
| !!! | ATAGGAATTTTATAGATAAG+AGG | - | chr1_4:58982093-58982112 | None:intergenic | 20.0% |
| !!! | AAATCTTAAGGGATTTTAAT+AGG | - | chr1_4:58982111-58982130 | None:intergenic | 20.0% |
| !!! | AAAATCCCTTAAGATTTTTA+TGG | + | chr1_4:58982114-58982133 | Msa0173650:intron | 20.0% |
| !! | CTAATCAATATATGTATATC+AGG | + | chr1_4:58982410-58982429 | Msa0173650:intron | 20.0% |
| !! | CTTTATCTTGTATTACATTA+AGG | + | chr1_4:58983259-58983278 | Msa0173650:intron | 20.0% |
| ! | AATTTGCATTCTTAGTTTCT+GGG | + | chr1_4:58980668-58980687 | Msa0173650:CDS | 25.0% |
| ! | CATTTCATACAATAACTCAA+AGG | - | chr1_4:58980899-58980918 | None:intergenic | 25.0% |
| ! | AATTCACCAACTAAAGTAAT+GGG | - | chr1_4:58980939-58980958 | None:intergenic | 25.0% |
| ! | AAATTCACCAACTAAAGTAA+TGG | - | chr1_4:58980940-58980959 | None:intergenic | 25.0% |
| !! | AAAGAGAATCTAAAATGATG+AGG | - | chr1_4:58980981-58981000 | None:intergenic | 25.0% |
| ! | TAAAATGTAACCACATATGT+CGG | - | chr1_4:58981231-58981250 | None:intergenic | 25.0% |
| ! | GACTTTCTTCTAAATATAGT+AGG | - | chr1_4:58981606-58981625 | None:intergenic | 25.0% |
| ! | TATATTTAGAAGAAAGTCGA+TGG | + | chr1_4:58981608-58981627 | Msa0173650:intron | 25.0% |
| ! | AACAAATGCCAAAATTATGT+AGG | - | chr1_4:58981859-58981878 | None:intergenic | 25.0% |
| !! | AGGAATTTTATAGATAAGAG+GGG | - | chr1_4:58982091-58982110 | None:intergenic | 25.0% |
| ! | ATTCCAAATGATCAATCTTT+CGG | - | chr1_4:58982206-58982225 | None:intergenic | 25.0% |
| !! | AGTAATATGTGTGTGATTTT+TGG | + | chr1_4:58982235-58982254 | Msa0173650:intron | 25.0% |
| ! | AATTTCGTGGACAAAAAATA+TGG | + | chr1_4:58982284-58982303 | Msa0173650:CDS | 25.0% |
| ! | ACAACAACATAAAGAAACAT+GGG | - | chr1_4:58982365-58982384 | None:intergenic | 25.0% |
| ! | AACAACAACATAAAGAAACA+TGG | - | chr1_4:58982366-58982385 | None:intergenic | 25.0% |
| ! | ATATATAAGTGTCTAGTCAA+TGG | - | chr1_4:58982600-58982619 | None:intergenic | 25.0% |
| ! | TTGTGTAGAATTGATATATC+TGG | + | chr1_4:58982638-58982657 | Msa0173650:intron | 25.0% |
| !! | TGTTTTACGTCTTTGATAAA+AGG | + | chr1_4:58982928-58982947 | Msa0173650:intron | 25.0% |
| ! | CTGATATCAAATATTTGCAA+AGG | - | chr1_4:58982963-58982982 | None:intergenic | 25.0% |
| !! | ATTTTGTTGAGACAACTTTT+TGG | - | chr1_4:58983023-58983042 | None:intergenic | 25.0% |
| ! | AAAAAGTTGTCTCAACAAAA+TGG | + | chr1_4:58983022-58983041 | Msa0173650:CDS | 25.0% |
| !! | ACTATCGATTATTTCATCTA+AGG | - | chr1_4:58983807-58983826 | None:intergenic | 25.0% |
| !! | TTGTTTTTCAACTATTGTGG+TGG | - | chr1_4:58980500-58980519 | None:intergenic | 30.0% |
| GAATTTGCATTCTTAGTTTC+TGG | + | chr1_4:58980667-58980686 | Msa0173650:CDS | 30.0% | |
| ATATGAGGTTGCAATGAATT+AGG | - | chr1_4:58980754-58980773 | None:intergenic | 30.0% | |
| TAATTCATTGCAACCTCATA+TGG | + | chr1_4:58980753-58980772 | Msa0173650:CDS | 30.0% | |
| AGGGTATAATATTCTATGCA+AGG | - | chr1_4:58980879-58980898 | None:intergenic | 30.0% | |
| AACAAGCATAAGAATACTCT+GGG | - | chr1_4:58981335-58981354 | None:intergenic | 30.0% | |
| AAACAAGCATAAGAATACTC+TGG | - | chr1_4:58981336-58981355 | None:intergenic | 30.0% | |
| ! | AAATAGTTGGCTTATTCATC+TGG | + | chr1_4:58981513-58981532 | Msa0173650:CDS | 30.0% |
| CTCTTTCTTTAACTATGCTA+TGG | + | chr1_4:58981654-58981673 | Msa0173650:intron | 30.0% | |
| ACACTTTATGAATTCCTGTA+GGG | + | chr1_4:58981692-58981711 | Msa0173650:intron | 30.0% | |
| ! | TTGACTTTCCATGTATTTTG+AGG | - | chr1_4:58981777-58981796 | None:intergenic | 30.0% |
| GTAGGATAAAGAAAATACCT+GGG | - | chr1_4:58981841-58981860 | None:intergenic | 30.0% | |
| TGTAGGATAAAGAAAATACC+TGG | - | chr1_4:58981842-58981861 | None:intergenic | 30.0% | |
| ACTGGAATAGAGTCAAATTA+AGG | + | chr1_4:58981997-58982016 | Msa0173650:CDS | 30.0% | |
| ! | TCCCTTAAGATTTTTATGGA+AGG | + | chr1_4:58982118-58982137 | Msa0173650:intron | 30.0% |
| GCCTTCCATAAAAATCTTAA+GGG | - | chr1_4:58982122-58982141 | None:intergenic | 30.0% | |
| AGCCTTCCATAAAAATCTTA+AGG | - | chr1_4:58982123-58982142 | None:intergenic | 30.0% | |
| !!! | GATTTTTGGTTCTTTTATCC+AGG | + | chr1_4:58982249-58982268 | Msa0173650:intron | 30.0% |
| TTGTTCAATCTTAATGTTCG+TGG | + | chr1_4:58982381-58982400 | Msa0173650:intron | 30.0% | |
| !! | CACTTCACTTTTGAAGATTT+TGG | - | chr1_4:58982507-58982526 | None:intergenic | 30.0% |
| TGTAGAATTGATATATCTGG+AGG | + | chr1_4:58982641-58982660 | Msa0173650:intron | 30.0% | |
| ACTAATTCTCCTAAAAGCTT+AGG | + | chr1_4:58982864-58982883 | Msa0173650:intron | 30.0% | |
| !!! | CAGTACTGTTTTGAAATTGT+AGG | + | chr1_4:58982980-58982999 | Msa0173650:intron | 30.0% |
| !! | AACTTTTTGGCAGATTTTTC+TGG | - | chr1_4:58983010-58983029 | None:intergenic | 30.0% |
| !! | ATTTCTGAAGTCTGTTTCAA+AGG | - | chr1_4:58983609-58983628 | None:intergenic | 30.0% |
| GGATTATTCTCTGATAACAA+TGG | - | chr1_4:58983859-58983878 | None:intergenic | 30.0% | |
| AATTGGCTGTATAACAAAAC+AGG | - | chr1_4:58983880-58983899 | None:intergenic | 30.0% | |
| AATACACCCAAACAAATACA+AGG | - | chr1_4:58984051-58984070 | None:intergenic | 30.0% | |
| TTGATATACCAACACTCTAT+CGG | - | chr1_4:58984145-58984164 | None:intergenic | 30.0% | |
| AAAAAAGACAACACACGACA+AGG | + | chr1_4:58980426-58980445 | Msa0173650:five_prime_UTR | 35.0% | |
| AAAAAGACAACACACGACAA+GGG | + | chr1_4:58980427-58980446 | Msa0173650:five_prime_UTR | 35.0% | |
| ! | CTATTGTGGTGGAAACAAAA+AGG | - | chr1_4:58980489-58980508 | None:intergenic | 35.0% |
| TGCTACTACTGATAATAGTG+AGG | - | chr1_4:58980590-58980609 | None:intergenic | 35.0% | |
| ! | TGCAAGGTTCTAATACAAAG+AGG | - | chr1_4:58980863-58980882 | None:intergenic | 35.0% |
| !! | AATGGGTTAGCTTCAAAATG+TGG | - | chr1_4:58980922-58980941 | None:intergenic | 35.0% |
| AGCTAACCCATTACTTTAGT+TGG | + | chr1_4:58980930-58980949 | Msa0173650:intron | 35.0% | |
| TGCCTTATATTGTTGTGAAG+TGG | + | chr1_4:58981090-58981109 | Msa0173650:intron | 35.0% | |
| CTCCACTTCACAACAATATA+AGG | - | chr1_4:58981095-58981114 | None:intergenic | 35.0% | |
| CTTATATTGTTGTGAAGTGG+AGG | + | chr1_4:58981093-58981112 | Msa0173650:intron | 35.0% | |
| TGTGCATAACTCAAACTCTT+CGG | + | chr1_4:58981168-58981187 | Msa0173650:intron | 35.0% | |
| ATTCAAATCCACGATCCAAA+TGG | - | chr1_4:58981486-58981505 | None:intergenic | 35.0% | |
| TTGAATCTGGTGCAAATAGT+TGG | + | chr1_4:58981500-58981519 | Msa0173650:CDS | 35.0% | |
| GACACTTTATGAATTCCTGT+AGG | + | chr1_4:58981691-58981710 | Msa0173650:intron | 35.0% | |
| TACAGAAAAAAGACTCATCG+TGG | + | chr1_4:58981749-58981768 | Msa0173650:CDS | 35.0% | |
| GAAAGTCAAATACCATTCAC+AGG | + | chr1_4:58981788-58981807 | Msa0173650:CDS | 35.0% | |
| TTGCTCAATATTCCTGTGAA+TGG | - | chr1_4:58981803-58981822 | None:intergenic | 35.0% | |
| AATAAACCAGAAGAAAACCC+AGG | + | chr1_4:58981821-58981840 | Msa0173650:CDS | 35.0% | |
| ! | AAAATACCTGGGTTTTCTTC+TGG | - | chr1_4:58981830-58981849 | None:intergenic | 35.0% |
| ATAAGTTGCAGCATCAATGA+GGG | - | chr1_4:58981905-58981924 | None:intergenic | 35.0% | |
| AAAGAAATCTGTGCATGGAA+TGG | - | chr1_4:58981976-58981995 | None:intergenic | 35.0% | |
| CAGTTAAAGAAATCTGTGCA+TGG | - | chr1_4:58981981-58982000 | None:intergenic | 35.0% | |
| CATGCACAGATTTCTTTAAC+TGG | + | chr1_4:58981979-58981998 | Msa0173650:intron | 35.0% | |
| !! | GTCAAATTAAGGTACTGTGA+TGG | + | chr1_4:58982008-58982027 | Msa0173650:CDS | 35.0% |
| AGCAATTAACTCAGCACTAA+AGG | - | chr1_4:58982182-58982201 | None:intergenic | 35.0% | |
| CTACCGAAAGATTGATCATT+TGG | + | chr1_4:58982200-58982219 | Msa0173650:intron | 35.0% | |
| ATAGAGGAACTATTGTCTCA+AGG | + | chr1_4:58982316-58982335 | Msa0173650:CDS | 35.0% | |
| GAACTCATCACAGTGTATTA+TGG | - | chr1_4:58982472-58982491 | None:intergenic | 35.0% | |
| !! | AAGATTTTGGTAACAAGCTC+TGG | - | chr1_4:58982494-58982513 | None:intergenic | 35.0% |
| ACAATGAGGAATATGTTTGG+AGG | + | chr1_4:58982668-58982687 | Msa0173650:CDS | 35.0% | |
| TTGAAGAACTGTGTGGTTAA+TGG | - | chr1_4:58982824-58982843 | None:intergenic | 35.0% | |
| ! | ACTTGACAACCTAAGCTTTT+AGG | - | chr1_4:58982876-58982895 | None:intergenic | 35.0% |
| GAATGAGAATTACCGAAGTT+GGG | - | chr1_4:58983049-58983068 | None:intergenic | 35.0% | |
| TGAATGAGAATTACCGAAGT+TGG | - | chr1_4:58983050-58983069 | None:intergenic | 35.0% | |
| TGCTTCGGATATTCAAAACT+TGG | - | chr1_4:58983115-58983134 | None:intergenic | 35.0% | |
| AGTAGAGATTGAAAACACCT+TGG | - | chr1_4:58983464-58983483 | None:intergenic | 35.0% | |
| TTCTCAAGATCATCTCAAAC+TGG | + | chr1_4:58983653-58983672 | Msa0173650:CDS | 35.0% | |
| CAAACCTTGTCATCAATAAG+AGG | - | chr1_4:58983749-58983768 | None:intergenic | 35.0% | |
| !! | CAATAGCTTTGACAACTTCT+CGG | - | chr1_4:58983932-58983951 | None:intergenic | 35.0% |
| CTCTTCTAAACACCAGATTA+TGG | - | chr1_4:58983983-58984002 | None:intergenic | 35.0% | |
| TTCCCTCCTTGTATTTGTTT+GGG | + | chr1_4:58984042-58984061 | Msa0173650:three_prime_UTR | 35.0% | |
| ! | CAATTTTACCGATAGAGTGT+TGG | + | chr1_4:58984134-58984153 | Msa0173650:three_prime_UTR | 35.0% |
| ! | ATTCAAGGAGCTGATTCCAA+AGG | + | chr1_4:58980790-58980809 | Msa0173650:CDS | 40.0% |
| TCTTATCACCACAGTCTGTT+TGG | + | chr1_4:58981441-58981460 | Msa0173650:intron | 40.0% | |
| AACATTGCCTGGTTACCATT+TGG | + | chr1_4:58981468-58981487 | Msa0173650:CDS | 40.0% | |
| TTGGATCGTGGATTTGAATC+TGG | + | chr1_4:58981487-58981506 | Msa0173650:CDS | 40.0% | |
| ! | TAGTTGGCTTATTCATCTGG+AGG | + | chr1_4:58981516-58981535 | Msa0173650:CDS | 40.0% |
| CTTTATGAATTCCTGTAGGG+AGG | + | chr1_4:58981695-58981714 | Msa0173650:intron | 40.0% | |
| TCGTGGTTCCTCAAAATACA+TGG | + | chr1_4:58981766-58981785 | Msa0173650:CDS | 40.0% | |
| CATAAGTTGCAGCATCAATG+AGG | - | chr1_4:58981906-58981925 | None:intergenic | 40.0% | |
| ! | GTTCTTTTATCCAGGCTGAA+GGG | + | chr1_4:58982257-58982276 | Msa0173650:intron | 40.0% |
| !! | AATATGGCTTGCTGCAATAG+AGG | + | chr1_4:58982300-58982319 | Msa0173650:CDS | 40.0% |
| AGAAACATGGGAAACCTGTT+CGG | - | chr1_4:58982353-58982372 | None:intergenic | 40.0% | |
| ! | GTGAAGTGTTTAAGTGATGC+AGG | + | chr1_4:58982519-58982538 | Msa0173650:CDS | 40.0% |
| CGCACAATGAGGAATATGTT+TGG | + | chr1_4:58982665-58982684 | Msa0173650:CDS | 40.0% | |
| ! | GTGGTTAATGGTTTGGAATG+TGG | - | chr1_4:58982812-58982831 | None:intergenic | 40.0% |
| GAACTGTGTGGTTAATGGTT+TGG | - | chr1_4:58982819-58982838 | None:intergenic | 40.0% | |
| CCAAAACTTGAAGAACTGTG+TGG | - | chr1_4:58982831-58982850 | None:intergenic | 40.0% | |
| !! | CCACACAGTTCTTCAAGTTT+TGG | + | chr1_4:58982828-58982847 | Msa0173650:intron | 40.0% |
| ! | AAGCTTAGGTTGTCAAGTGA+AGG | + | chr1_4:58982878-58982897 | Msa0173650:intron | 40.0% |
| CAACAAAATGGACCCAACTT+CGG | + | chr1_4:58983034-58983053 | Msa0173650:CDS | 40.0% | |
| !! | ACCATTGTTTCTACTCAACG+CGG | + | chr1_4:58983185-58983204 | Msa0173650:CDS | 40.0% |
| ACGTGAACTATGTTTCCATC+AGG | + | chr1_4:58983338-58983357 | Msa0173650:intron | 40.0% | |
| AGAGATTGAAAACACCTTGG+AGG | - | chr1_4:58983461-58983480 | None:intergenic | 40.0% | |
| ! | CTCTCCTCTTATTGATGACA+AGG | + | chr1_4:58983742-58983761 | Msa0173650:CDS | 40.0% |
| TTATGGCAGCTATTGTCACA+GGG | - | chr1_4:58983966-58983985 | None:intergenic | 40.0% | |
| ATTATGGCAGCTATTGTCAC+AGG | - | chr1_4:58983967-58983986 | None:intergenic | 40.0% | |
| TGACAATAGCTGCCATAATC+TGG | + | chr1_4:58983968-58983987 | Msa0173650:CDS | 40.0% | |
| CTTCCCTCCTTGTATTTGTT+TGG | + | chr1_4:58984041-58984060 | Msa0173650:three_prime_UTR | 40.0% | |
| CACCCAAACAAATACAAGGA+GGG | - | chr1_4:58984047-58984066 | None:intergenic | 40.0% | |
| ACACCCAAACAAATACAAGG+AGG | - | chr1_4:58984048-58984067 | None:intergenic | 40.0% | |
| !!! | GAAGCTGCTGCTGATTTTGT+TGG | + | chr1_4:58980639-58980658 | Msa0173650:CDS | 45.0% |
| ! | GTTTCTGGGTTTATCTCCTC+TGG | + | chr1_4:58980682-58980701 | Msa0173650:CDS | 45.0% |
| ! | AAGTGTTGTGTCAGATCCAG+AGG | - | chr1_4:58980701-58980720 | None:intergenic | 45.0% |
| AGAGTGAGGTCTACCATATG+AGG | - | chr1_4:58980769-58980788 | None:intergenic | 45.0% | |
| GTAGACCTCACTCTCATTCA+AGG | + | chr1_4:58980775-58980794 | Msa0173650:CDS | 45.0% | |
| CTACACTGACACATAGACAC+TGG | - | chr1_4:58981279-58981298 | None:intergenic | 45.0% | |
| GACATACACAACATGGACAG+CGG | - | chr1_4:58981305-58981324 | None:intergenic | 45.0% | |
| GCTGTCCATGTTGTGTATGT+CGG | + | chr1_4:58981304-58981323 | Msa0173650:intron | 45.0% | |
| !! | AAGCACCGACATACACAACA+TGG | - | chr1_4:58981312-58981331 | None:intergenic | 45.0% |
| ATCACCACAGTCTGTTTGGA+TGG | + | chr1_4:58981445-58981464 | Msa0173650:intron | 45.0% | |
| TGTTCCATCCAAACAGACTG+TGG | - | chr1_4:58981452-58981471 | None:intergenic | 45.0% | |
| TGTTTGGATGGAACATTGCC+TGG | + | chr1_4:58981457-58981476 | Msa0173650:CDS | 45.0% | |
| TATGAATTCCTGTAGGGAGG+AGG | + | chr1_4:58981698-58981717 | Msa0173650:intron | 45.0% | |
| TGCTGGAGACAGTGAAAATG+AGG | + | chr1_4:58982040-58982059 | Msa0173650:CDS | 45.0% | |
| ! | GGTTCTTTTATCCAGGCTGA+AGG | + | chr1_4:58982256-58982275 | Msa0173650:intron | 45.0% |
| ! | TGGAGGTGTAGTTCAGTTAC+AGG | + | chr1_4:58982685-58982704 | Msa0173650:CDS | 45.0% |
| ! | CATTCTGAGGAAAGAAGCAC+TGG | - | chr1_4:58983146-58983165 | None:intergenic | 45.0% |
| GTGCTTCTTTCCTCAGAATG+TGG | + | chr1_4:58983146-58983165 | Msa0173650:intron | 45.0% | |
| ACATGTTCGACCACATTCTG+AGG | - | chr1_4:58983159-58983178 | None:intergenic | 45.0% | |
| TCTCAAATTCAGCTCCTCCA+AGG | + | chr1_4:58983444-58983463 | Msa0173650:CDS | 45.0% | |
| TCTCCAACAGCAACTGCAAT+TGG | - | chr1_4:58983897-58983916 | None:intergenic | 45.0% | |
| AGCTATTGTCACAGGGGTAA+GGG | - | chr1_4:58983959-58983978 | None:intergenic | 45.0% | |
| TATGGCAGCTATTGTCACAG+GGG | - | chr1_4:58983965-58983984 | None:intergenic | 45.0% | |
| CAGCTCCTTGAATGAGAGTG+AGG | - | chr1_4:58980783-58980802 | None:intergenic | 50.0% | |
| GAGAGAGATACCAGCTCCTT+TGG | - | chr1_4:58980809-58980828 | None:intergenic | 50.0% | |
| CGACATCTCACCGACATATG+TGG | + | chr1_4:58981218-58981237 | Msa0173650:intron | 50.0% | |
| CCACGATCCAAATGGTAACC+AGG | - | chr1_4:58981478-58981497 | None:intergenic | 50.0% | |
| CCTGGTTACCATTTGGATCG+TGG | + | chr1_4:58981475-58981494 | Msa0173650:CDS | 50.0% | |
| AATTCCTGTAGGGAGGAGGA+TGG | + | chr1_4:58981702-58981721 | Msa0173650:intron | 50.0% | |
| !! | TGTGATGGAGCGTCTTTTGC+TGG | + | chr1_4:58982023-58982042 | Msa0173650:CDS | 50.0% |
| GAAATTGAAGCCCTTCAGCC+TGG | - | chr1_4:58982270-58982289 | None:intergenic | 50.0% | |
| GCTGAAGGGCTTCAATTTCG+TGG | + | chr1_4:58982271-58982290 | Msa0173650:CDS | 50.0% | |
| AGGAATGCAGAATGCCGAAC+AGG | + | chr1_4:58982336-58982355 | Msa0173650:CDS | 50.0% | |
| GTATATCAGGCCCTTCTCTC+TGG | + | chr1_4:58982423-58982442 | Msa0173650:intron | 50.0% | |
| TATCTGGAGGACGCACAATG+AGG | + | chr1_4:58982654-58982673 | Msa0173650:CDS | 50.0% | |
| GCACTGGACGAAACATGCTT+CGG | - | chr1_4:58983130-58983149 | None:intergenic | 50.0% | |
| GCCGCGTTGAGTAGAAACAA+TGG | - | chr1_4:58983189-58983208 | None:intergenic | 50.0% | |
| ATGACGTGTGGCAGGTAACA+TGG | + | chr1_4:58983211-58983230 | Msa0173650:intron | 50.0% | |
| !! | CTAAACTGGCTTGGACCTGA+TGG | - | chr1_4:58983356-58983375 | None:intergenic | 50.0% |
| !! | TCTTTGGGGCTAAACTGGCT+TGG | - | chr1_4:58983365-58983384 | None:intergenic | 50.0% |
| !! | AGCTGTCTTTGGGGCTAAAC+TGG | - | chr1_4:58983370-58983389 | None:intergenic | 50.0% |
| AGTCATTCCAAGAGCCAAGG+GGG | - | chr1_4:58983395-58983414 | None:intergenic | 50.0% | |
| CAGTCATTCCAAGAGCCAAG+GGG | - | chr1_4:58983396-58983415 | None:intergenic | 50.0% | |
| GCAGTCATTCCAAGAGCCAA+GGG | - | chr1_4:58983397-58983416 | None:intergenic | 50.0% | |
| TGCAGTCATTCCAAGAGCCA+AGG | - | chr1_4:58983398-58983417 | None:intergenic | 50.0% | |
| TCATTGCCAGTCTGAGAGAC+AGG | + | chr1_4:58983700-58983719 | Msa0173650:CDS | 50.0% | |
| ATGTCTCCTGTCTCTCAGAC+TGG | - | chr1_4:58983709-58983728 | None:intergenic | 50.0% | |
| AGTCTGAGAGACAGGAGACA+TGG | + | chr1_4:58983708-58983727 | Msa0173650:CDS | 50.0% | |
| CAGCCAATTGCAGTTGCTGT+TGG | + | chr1_4:58983891-58983910 | Msa0173650:intron | 50.0% | |
| ! | TTGCAGTTGCTGTTGGAGAC+TGG | + | chr1_4:58983898-58983917 | Msa0173650:CDS | 50.0% |
| CAGCTATTGTCACAGGGGTA+AGG | - | chr1_4:58983960-58983979 | None:intergenic | 50.0% | |
| ! | GGAGCTGATTCCAAAGGAGC+TGG | + | chr1_4:58980796-58980815 | Msa0173650:CDS | 55.0% |
| ! | CGCAGAGCATCCAGAGAGAA+GGG | - | chr1_4:58982436-58982455 | None:intergenic | 55.0% |
| CCTTCTCTCTGGATGCTCTG+CGG | + | chr1_4:58982434-58982453 | Msa0173650:CDS | 55.0% | |
| CTTCTCTCTGGATGCTCTGC+GGG | + | chr1_4:58982435-58982454 | Msa0173650:CDS | 55.0% | |
| TCAACGCGGCTTATGACGTG+TGG | + | chr1_4:58983199-58983218 | Msa0173650:CDS | 55.0% | |
| AAGGGGGTCAGCTGTCTTTG+GGG | - | chr1_4:58983379-58983398 | None:intergenic | 55.0% | |
| CAAGGGGGTCAGCTGTCTTT+GGG | - | chr1_4:58983380-58983399 | None:intergenic | 55.0% | |
| CACACCATCCTCCTCCCTAC+AGG | - | chr1_4:58981709-58981728 | None:intergenic | 60.0% | |
| ! | CCGCAGAGCATCCAGAGAGA+AGG | - | chr1_4:58982437-58982456 | None:intergenic | 60.0% |
| CCAAGGGGGTCAGCTGTCTT+TGG | - | chr1_4:58983381-58983400 | None:intergenic | 60.0% | |
| CCAAAGACAGCTGACCCCCT+TGG | + | chr1_4:58983378-58983397 | Msa0173650:CDS | 60.0% | |
| CTCTCTGGATGCTCTGCGGG+TGG | + | chr1_4:58982438-58982457 | Msa0173650:CDS | 65.0% | |
| CGCGGCTTATGACGTGTGGC+AGG | + | chr1_4:58983203-58983222 | Msa0173650:CDS | 65.0% | |
| ! | CAGCTGACCCCCTTGGCTCT+TGG | + | chr1_4:58983385-58983404 | Msa0173650:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 58980389 | 58984204 | 58980389 | ID=Msa0173650;Name=Msa0173650 |
| chr1_4 | mRNA | 58980389 | 58984204 | 58980389 | ID=Msa0173650-mRNA-1;Parent=Msa0173650;Name=Msa0173650-mRNA-1;_AED=0.15;_eAED=0.15;_QI=242|1|1|1|1|1|12|197|414 |
| chr1_4 | exon | 58980389 | 58980817 | 58980389 | ID=Msa0173650-mRNA-1:exon:18379;Parent=Msa0173650-mRNA-1 |
| chr1_4 | exon | 58981455 | 58981537 | 58981455 | ID=Msa0173650-mRNA-1:exon:18380;Parent=Msa0173650-mRNA-1 |
| chr1_4 | exon | 58981713 | 58981842 | 58981713 | ID=Msa0173650-mRNA-1:exon:18381;Parent=Msa0173650-mRNA-1 |
| chr1_4 | exon | 58981988 | 58982061 | 58981988 | ID=Msa0173650-mRNA-1:exon:18382;Parent=Msa0173650-mRNA-1 |
| chr1_4 | exon | 58982271 | 58982357 | 58982271 | ID=Msa0173650-mRNA-1:exon:18383;Parent=Msa0173650-mRNA-1 |
| chr1_4 | exon | 58982432 | 58982556 | 58982432 | ID=Msa0173650-mRNA-1:exon:18384;Parent=Msa0173650-mRNA-1 |
| chr1_4 | exon | 58982646 | 58982706 | 58982646 | ID=Msa0173650-mRNA-1:exon:18385;Parent=Msa0173650-mRNA-1 |
| chr1_4 | exon | 58983002 | 58983055 | 58983002 | ID=Msa0173650-mRNA-1:exon:18386;Parent=Msa0173650-mRNA-1 |
| chr1_4 | exon | 58983147 | 58983224 | 58983147 | ID=Msa0173650-mRNA-1:exon:18387;Parent=Msa0173650-mRNA-1 |
| chr1_4 | exon | 58983360 | 58983465 | 58983360 | ID=Msa0173650-mRNA-1:exon:18388;Parent=Msa0173650-mRNA-1 |
| chr1_4 | exon | 58983618 | 58983763 | 58983618 | ID=Msa0173650-mRNA-1:exon:18389;Parent=Msa0173650-mRNA-1 |
| chr1_4 | exon | 58983894 | 58984204 | 58983894 | ID=Msa0173650-mRNA-1:exon:18390;Parent=Msa0173650-mRNA-1 |
| chr1_4 | five_prime_UTR | 58980389 | 58980630 | 58980389 | ID=Msa0173650-mRNA-1:five_prime_utr;Parent=Msa0173650-mRNA-1 |
| chr1_4 | CDS | 58980631 | 58980817 | 58980631 | ID=Msa0173650-mRNA-1:cds;Parent=Msa0173650-mRNA-1 |
| chr1_4 | CDS | 58981455 | 58981537 | 58981455 | ID=Msa0173650-mRNA-1:cds;Parent=Msa0173650-mRNA-1 |
| chr1_4 | CDS | 58981713 | 58981842 | 58981713 | ID=Msa0173650-mRNA-1:cds;Parent=Msa0173650-mRNA-1 |
| chr1_4 | CDS | 58981988 | 58982061 | 58981988 | ID=Msa0173650-mRNA-1:cds;Parent=Msa0173650-mRNA-1 |
| chr1_4 | CDS | 58982271 | 58982357 | 58982271 | ID=Msa0173650-mRNA-1:cds;Parent=Msa0173650-mRNA-1 |
| chr1_4 | CDS | 58982432 | 58982556 | 58982432 | ID=Msa0173650-mRNA-1:cds;Parent=Msa0173650-mRNA-1 |
| chr1_4 | CDS | 58982646 | 58982706 | 58982646 | ID=Msa0173650-mRNA-1:cds;Parent=Msa0173650-mRNA-1 |
| chr1_4 | CDS | 58983002 | 58983055 | 58983002 | ID=Msa0173650-mRNA-1:cds;Parent=Msa0173650-mRNA-1 |
| chr1_4 | CDS | 58983147 | 58983224 | 58983147 | ID=Msa0173650-mRNA-1:cds;Parent=Msa0173650-mRNA-1 |
| chr1_4 | CDS | 58983360 | 58983465 | 58983360 | ID=Msa0173650-mRNA-1:cds;Parent=Msa0173650-mRNA-1 |
| chr1_4 | CDS | 58983618 | 58983763 | 58983618 | ID=Msa0173650-mRNA-1:cds;Parent=Msa0173650-mRNA-1 |
| chr1_4 | CDS | 58983894 | 58984007 | 58983894 | ID=Msa0173650-mRNA-1:cds;Parent=Msa0173650-mRNA-1 |
| chr1_4 | three_prime_UTR | 58984008 | 58984204 | 58984008 | ID=Msa0173650-mRNA-1:three_prime_utr;Parent=Msa0173650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
