Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081350 | XP_013469132.1 | 95.652 | 414 | 9 | 3 | 1 | 414 | 1 | 405 | 0.0 | 812 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081350 | sp|F4I839|PAE2_ARATH | 63.333 | 420 | 144 | 2 | 2 | 413 | 27 | 444 | 0.0 | 574 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081350 | A0A072VYL4 | 95.652 | 414 | 9 | 3 | 1 | 414 | 1 | 405 | 0.0 | 812 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0019640 | Msa0081350 | 0.830723 | 2.501384e-55 | -8.615850e-47 |
| Msa0034280 | Msa0081350 | 0.837443 | 5.182080e-57 | -8.615850e-47 |
| Msa0081350 | Msa0081490 | 0.940832 | 1.186901e-100 | -8.615850e-47 |
| Msa0081350 | Msa0173650 | 0.996693 | 6.601034e-231 | -8.615850e-47 |
| Msa0081350 | Msa1003020 | 0.916041 | 2.867578e-85 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081350 | MtrunA17_Chr1g0193761 | 95.652 | 414 | 9 | 3 | 1 | 414 | 1 | 405 | 0.0 | 812 |
| Msa0081350 | MtrunA17_Chr7g0270931 | 73.671 | 414 | 103 | 2 | 2 | 411 | 3 | 414 | 0.0 | 654 |
| Msa0081350 | MtrunA17_Chr1g0193381 | 68.123 | 389 | 122 | 1 | 26 | 412 | 28 | 416 | 0.0 | 587 |
| Msa0081350 | MtrunA17_Chr7g0271231 | 71.311 | 366 | 105 | 0 | 46 | 411 | 53 | 418 | 0.0 | 581 |
| Msa0081350 | MtrunA17_Chr4g0069571 | 63.007 | 419 | 140 | 4 | 1 | 411 | 9 | 420 | 0.0 | 553 |
| Msa0081350 | MtrunA17_Chr5g0408881 | 53.867 | 362 | 165 | 1 | 49 | 408 | 29 | 390 | 5.38e-153 | 440 |
| Msa0081350 | MtrunA17_Chr7g0238491 | 50.000 | 406 | 192 | 4 | 15 | 414 | 28 | 428 | 1.19e-147 | 426 |
| Msa0081350 | MtrunA17_Chr8g0369681 | 49.730 | 370 | 184 | 1 | 45 | 412 | 23 | 392 | 2.42e-146 | 422 |
| Msa0081350 | MtrunA17_Chr8g0369651 | 49.589 | 365 | 182 | 1 | 49 | 411 | 28 | 392 | 4.77e-146 | 420 |
| Msa0081350 | MtrunA17_Chr1g0203101 | 54.768 | 367 | 161 | 3 | 49 | 410 | 39 | 405 | 5.92e-146 | 421 |
| Msa0081350 | MtrunA17_Chr1g0203121 | 54.223 | 367 | 163 | 3 | 49 | 410 | 39 | 405 | 7.61e-143 | 413 |
| Msa0081350 | MtrunA17_Chr5g0418101 | 49.041 | 365 | 180 | 2 | 48 | 410 | 41 | 401 | 1.37e-135 | 394 |
| Msa0081350 | MtrunA17_Chr1g0163701 | 49.515 | 103 | 52 | 0 | 229 | 331 | 270 | 372 | 6.99e-28 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081350 | AT1G57590.1 | 63.333 | 420 | 144 | 2 | 2 | 413 | 27 | 444 | 0.0 | 574 |
| Msa0081350 | AT5G26670.1 | 63.876 | 418 | 134 | 2 | 7 | 412 | 4 | 416 | 0.0 | 567 |
| Msa0081350 | AT3G62060.2 | 63.981 | 422 | 135 | 5 | 3 | 411 | 1 | 418 | 0.0 | 566 |
| Msa0081350 | AT3G05910.1 | 68.733 | 371 | 115 | 1 | 42 | 412 | 46 | 415 | 0.0 | 566 |
| Msa0081350 | AT3G62060.1 | 63.981 | 422 | 135 | 5 | 3 | 411 | 1 | 418 | 0.0 | 565 |
| Msa0081350 | AT2G46930.1 | 63.549 | 417 | 144 | 3 | 3 | 412 | 1 | 416 | 0.0 | 560 |
| Msa0081350 | AT4G19420.1 | 56.438 | 365 | 157 | 1 | 49 | 411 | 25 | 389 | 5.89e-161 | 459 |
| Msa0081350 | AT4G19420.2 | 56.438 | 365 | 157 | 1 | 49 | 411 | 25 | 389 | 5.89e-161 | 459 |
| Msa0081350 | AT5G26670.3 | 66.779 | 298 | 99 | 0 | 115 | 412 | 1 | 298 | 3.46e-157 | 445 |
| Msa0081350 | AT5G26670.2 | 66.779 | 298 | 99 | 0 | 115 | 412 | 1 | 298 | 3.46e-157 | 445 |
| Msa0081350 | AT5G26670.4 | 66.779 | 298 | 99 | 0 | 115 | 412 | 1 | 298 | 3.46e-157 | 445 |
| Msa0081350 | AT4G19420.4 | 51.750 | 400 | 156 | 2 | 49 | 411 | 25 | 424 | 6.61e-154 | 442 |
| Msa0081350 | AT5G23870.2 | 55.163 | 368 | 159 | 4 | 49 | 410 | 35 | 402 | 9.73e-154 | 442 |
| Msa0081350 | AT5G23870.1 | 55.163 | 368 | 159 | 4 | 49 | 410 | 35 | 402 | 9.86e-154 | 441 |
| Msa0081350 | AT5G23870.4 | 55.163 | 368 | 159 | 4 | 49 | 410 | 35 | 402 | 9.86e-154 | 441 |
| Msa0081350 | AT5G23870.3 | 55.163 | 368 | 159 | 4 | 49 | 410 | 35 | 402 | 1.18e-153 | 442 |
| Msa0081350 | AT1G09550.1 | 55.000 | 360 | 157 | 3 | 31 | 390 | 28 | 382 | 7.16e-150 | 430 |
| Msa0081350 | AT3G09410.1 | 50.000 | 400 | 193 | 2 | 15 | 411 | 31 | 426 | 7.74e-149 | 429 |
| Msa0081350 | AT3G05910.2 | 68.582 | 261 | 81 | 1 | 43 | 303 | 47 | 306 | 3.07e-136 | 393 |
| Msa0081350 | AT3G09405.1 | 48.294 | 381 | 191 | 3 | 29 | 406 | 32 | 409 | 3.65e-136 | 396 |
| Msa0081350 | AT4G19410.1 | 47.645 | 361 | 186 | 2 | 49 | 406 | 24 | 384 | 7.03e-135 | 392 |
| Msa0081350 | AT5G45280.2 | 46.814 | 361 | 189 | 2 | 49 | 406 | 24 | 384 | 9.66e-133 | 387 |
| Msa0081350 | AT3G09410.3 | 48.634 | 366 | 181 | 2 | 15 | 377 | 31 | 392 | 1.70e-129 | 379 |
| Msa0081350 | AT4G19410.2 | 47.965 | 344 | 177 | 1 | 49 | 390 | 24 | 367 | 4.17e-128 | 379 |
| Msa0081350 | AT3G09405.2 | 48.845 | 303 | 150 | 2 | 107 | 406 | 2 | 302 | 2.63e-109 | 324 |
| Msa0081350 | AT5G45280.1 | 49.474 | 285 | 142 | 1 | 49 | 331 | 24 | 308 | 9.47e-109 | 325 |
| Msa0081350 | AT4G19420.3 | 59.817 | 219 | 86 | 1 | 49 | 265 | 25 | 243 | 1.00e-93 | 284 |
Find 95 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTTGCATTCTTAGTTTC+TGG | 0.113356 | 1_2:+59837382 | Msa0081350:CDS |
| CTTCCCTCCTTGTATTTGTT+TGG | 0.210251 | 1_2:+59840756 | Msa0081350:three_prime_UTR |
| GAACTCATCACAGTGTATTA+TGG | 0.279288 | 1_2:-59839184 | None:intergenic |
| CATGCACAGATTTCTTTAAC+TGG | 0.280335 | 1_2:+59838694 | Msa0081350:intron |
| AATTTGCATTCTTAGTTTCT+GGG | 0.281723 | 1_2:+59837383 | Msa0081350:CDS |
| AGCTGTCTTTGGGGCTAAAC+TGG | 0.296500 | 1_2:-59840082 | None:intergenic |
| ACTGGAATAGAGTCAAATTA+AGG | 0.300173 | 1_2:+59838712 | Msa0081350:CDS |
| TTCCCTCCTTGTATTTGTTT+GGG | 0.304087 | 1_2:+59840757 | Msa0081350:three_prime_UTR |
| TGGAGGTGTAGTTCAGTTAC+AGG | 0.319230 | 1_2:+59839400 | Msa0081350:CDS |
| GTTTCTGGGTTTATCTCCTC+TGG | 0.329452 | 1_2:+59837397 | Msa0081350:CDS |
| TCTTATCACCACAGTCTGTT+TGG | 0.333070 | 1_2:+59838156 | Msa0081350:intron |
| ATATGAGGTTGCAATGAATT+AGG | 0.345810 | 1_2:-59837466 | None:intergenic |
| AACATTGCCTGGTTACCATT+TGG | 0.363625 | 1_2:+59838183 | Msa0081350:CDS |
| GAGAGAGATACCAGCTCCTT+TGG | 0.363704 | 1_2:-59837521 | None:intergenic |
| CTCTTCTAAACACCAGATTA+TGG | 0.376863 | 1_2:-59840695 | None:intergenic |
| GTATATCAGGCCCTTCTCTC+TGG | 0.378444 | 1_2:+59839138 | Msa0081350:intron |
| TTCTGCATTGAATAGCAAAA+TGG | 0.379784 | 1_2:+59840897 | Msa0081350:three_prime_UTR |
| CTTCTCTCTGGATGCTCTGC+GGG | 0.380263 | 1_2:+59839150 | Msa0081350:CDS |
| CTATTGTGGTGGAAACAAAA+AGG | 0.388388 | 1_2:-59837201 | None:intergenic |
| TTGTGTAGAATTGATATATC+TGG | 0.393324 | 1_2:+59839353 | Msa0081350:intron |
| TTGGATCGTGGATTTGAATC+TGG | 0.394258 | 1_2:+59838202 | Msa0081350:CDS |
| CAATAGCTTTGACAACTTCT+CGG | 0.399277 | 1_2:-59840644 | None:intergenic |
| TGAATGAGAATTACCGAAGT+TGG | 0.402427 | 1_2:-59839762 | None:intergenic |
| TAATTCATTGCAACCTCATA+TGG | 0.405524 | 1_2:+59837468 | Msa0081350:CDS |
| TTGCTCAATATTCCTGTGAA+TGG | 0.409923 | 1_2:-59838515 | None:intergenic |
| TGACAATAGCTGCCATAATC+TGG | 0.419500 | 1_2:+59840683 | Msa0081350:CDS |
| TCTCCAACAGCAACTGCAAT+TGG | 0.422862 | 1_2:-59840609 | None:intergenic |
| CGCACAATGAGGAATATGTT+TGG | 0.429123 | 1_2:+59839380 | Msa0081350:CDS |
| TTCTCAAGATCATCTCAAAC+TGG | 0.432587 | 1_2:+59840368 | Msa0081350:CDS |
| GTGAAGTGTTTAAGTGATGC+AGG | 0.433309 | 1_2:+59839234 | Msa0081350:CDS |
| TTGAATCTGGTGCAAATAGT+TGG | 0.437940 | 1_2:+59838215 | Msa0081350:CDS |
| TCTTTGGGGCTAAACTGGCT+TGG | 0.447959 | 1_2:-59840077 | None:intergenic |
| AAATAGTTGGCTTATTCATC+TGG | 0.452603 | 1_2:+59838228 | Msa0081350:CDS |
| AATATGGCTTGCTGCAATAG+AGG | 0.452909 | 1_2:+59839015 | Msa0081350:CDS |
| CAAACCTTGTCATCAATAAG+AGG | 0.455553 | 1_2:-59840461 | None:intergenic |
| CAGCTATTGTCACAGGGGTA+AGG | 0.457583 | 1_2:-59840672 | None:intergenic |
| CTCTCCTCTTATTGATGACA+AGG | 0.463103 | 1_2:+59840457 | Msa0081350:CDS |
| AGGAATGCAGAATGCCGAAC+AGG | 0.466856 | 1_2:+59839051 | Msa0081350:CDS |
| GTAGACCTCACTCTCATTCA+AGG | 0.469696 | 1_2:+59837490 | Msa0081350:CDS |
| GAATGAGAATTACCGAAGTT+GGG | 0.474842 | 1_2:-59839761 | None:intergenic |
| ATCACCACAGTCTGTTTGGA+TGG | 0.477109 | 1_2:+59838160 | Msa0081350:intron |
| GCTGAAGGGCTTCAATTTCG+TGG | 0.477342 | 1_2:+59838986 | Msa0081350:CDS |
| TGTTTGGATGGAACATTGCC+TGG | 0.481213 | 1_2:+59838172 | Msa0081350:CDS |
| CAGCCAATTGCAGTTGCTGT+TGG | 0.488140 | 1_2:+59840606 | Msa0081350:intron |
| CGCAGAGCATCCAGAGAGAA+GGG | 0.499707 | 1_2:-59839148 | None:intergenic |
| CGCGGCTTATGACGTGTGGC+AGG | 0.504914 | 1_2:+59839918 | Msa0081350:CDS |
| CCGCAGAGCATCCAGAGAGA+AGG | 0.509186 | 1_2:-59839149 | None:intergenic |
| CCTGGTTACCATTTGGATCG+TGG | 0.510305 | 1_2:+59838190 | Msa0081350:CDS |
| TTGCAGTTGCTGTTGGAGAC+TGG | 0.515469 | 1_2:+59840613 | Msa0081350:CDS |
| AGAAACATGGGAAACCTGTT+CGG | 0.515752 | 1_2:-59839065 | None:intergenic |
| TCATTGCCAGTCTGAGAGAC+AGG | 0.517916 | 1_2:+59840415 | Msa0081350:CDS |
| ATTATGGCAGCTATTGTCAC+AGG | 0.520288 | 1_2:-59840679 | None:intergenic |
| TATGAATTCCTGTAGGGAGG+AGG | 0.530218 | 1_2:+59838413 | Msa0081350:intron |
| TCGTGGTTCCTCAAAATACA+TGG | 0.531611 | 1_2:+59838481 | Msa0081350:CDS |
| AGCTATTGTCACAGGGGTAA+GGG | 0.533131 | 1_2:-59840671 | None:intergenic |
| TGCAGTCATTCCAAGAGCCA+AGG | 0.540000 | 1_2:-59840110 | None:intergenic |
| ATTCAAATCCACGATCCAAA+TGG | 0.544072 | 1_2:-59838198 | None:intergenic |
| CCACGATCCAAATGGTAACC+AGG | 0.549111 | 1_2:-59838190 | None:intergenic |
| CTCTCTGGATGCTCTGCGGG+TGG | 0.556169 | 1_2:+59839153 | Msa0081350:CDS |
| GAAAGTCAAATACCATTCAC+AGG | 0.558058 | 1_2:+59838503 | Msa0081350:CDS |
| GGAGCTGATTCCAAAGGAGC+TGG | 0.563677 | 1_2:+59837511 | Msa0081350:CDS |
| AAGTGTTGTGTCAGATCCAG+AGG | 0.564410 | 1_2:-59837413 | None:intergenic |
| ATGTCTCCTGTCTCTCAGAC+TGG | 0.564494 | 1_2:-59840421 | None:intergenic |
| GCAGTCATTCCAAGAGCCAA+GGG | 0.566026 | 1_2:-59840109 | None:intergenic |
| AGAGTGAGGTCTACCATATG+AGG | 0.570471 | 1_2:-59837481 | None:intergenic |
| GTGCTTCTTTCCTCAGAATG+TGG | 0.572227 | 1_2:+59839861 | Msa0081350:intron |
| ACATGTTCGACCACATTCTG+AGG | 0.577838 | 1_2:-59839871 | None:intergenic |
| CCTTCTCTCTGGATGCTCTG+CGG | 0.578584 | 1_2:+59839149 | Msa0081350:CDS |
| TGCTGGAGACAGTGAAAATG+AGG | 0.579915 | 1_2:+59838755 | Msa0081350:CDS |
| GTCAAATTAAGGTACTGTGA+TGG | 0.583686 | 1_2:+59838723 | Msa0081350:CDS |
| TTGATATACCAACACTCTAT+CGG | 0.587156 | 1_2:-59840857 | None:intergenic |
| CAACAAAATGGACCCAACTT+CGG | 0.599036 | 1_2:+59839749 | Msa0081350:CDS |
| TCTCAAATTCAGCTCCTCCA+AGG | 0.601242 | 1_2:+59840159 | Msa0081350:CDS |
| ATAGAGGAACTATTGTCTCA+AGG | 0.604252 | 1_2:+59839031 | Msa0081350:CDS |
| CAGCTCCTTGAATGAGAGTG+AGG | 0.609174 | 1_2:-59837495 | None:intergenic |
| AGAGATTGAAAACACCTTGG+AGG | 0.618464 | 1_2:-59840173 | None:intergenic |
| CACCCAAACAAATACAAGGA+GGG | 0.619322 | 1_2:-59840759 | None:intergenic |
| TAGTTGGCTTATTCATCTGG+AGG | 0.619415 | 1_2:+59838231 | Msa0081350:CDS |
| TGCTACTACTGATAATAGTG+AGG | 0.620028 | 1_2:-59837302 | None:intergenic |
| AGTCTGAGAGACAGGAGACA+TGG | 0.627603 | 1_2:+59840423 | Msa0081350:CDS |
| ACAATGAGGAATATGTTTGG+AGG | 0.627712 | 1_2:+59839383 | Msa0081350:CDS |
| AATAAACCAGAAGAAAACCC+AGG | 0.629312 | 1_2:+59838536 | Msa0081350:CDS |
| AATACACCCAAACAAATACA+AGG | 0.632833 | 1_2:-59840763 | None:intergenic |
| ATTCAAGGAGCTGATTCCAA+AGG | 0.636479 | 1_2:+59837505 | Msa0081350:CDS |
| TGTAGAATTGATATATCTGG+AGG | 0.641221 | 1_2:+59839356 | Msa0081350:intron |
| AATTCCTGTAGGGAGGAGGA+TGG | 0.645908 | 1_2:+59838417 | Msa0081350:intron |
| TCAACGCGGCTTATGACGTG+TGG | 0.674971 | 1_2:+59839914 | Msa0081350:CDS |
| TTATGGCAGCTATTGTCACA+GGG | 0.677243 | 1_2:-59840678 | None:intergenic |
| GCCGCGTTGAGTAGAAACAA+TGG | 0.677618 | 1_2:-59839901 | None:intergenic |
| TATCTGGAGGACGCACAATG+AGG | 0.686282 | 1_2:+59839369 | Msa0081350:CDS |
| CAGTCATTCCAAGAGCCAAG+GGG | 0.695996 | 1_2:-59840108 | None:intergenic |
| ACACCCAAACAAATACAAGG+AGG | 0.699587 | 1_2:-59840760 | None:intergenic |
| AGTCATTCCAAGAGCCAAGG+GGG | 0.704496 | 1_2:-59840107 | None:intergenic |
| ACCATTGTTTCTACTCAACG+CGG | 0.729768 | 1_2:+59839900 | Msa0081350:CDS |
| TATGGCAGCTATTGTCACAG+GGG | 0.750427 | 1_2:-59840677 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTAAAATTATTTTAAAGATT+AGG | - | chr1_2:59839803-59839822 | None:intergenic | 10.0% |
| !! | CTATAAAAAGATATAAACAA+GGG | - | chr1_2:59837745-59837764 | None:intergenic | 15.0% |
| !! | ACTATAAAAAGATATAAACA+AGG | - | chr1_2:59837746-59837765 | None:intergenic | 15.0% |
| !!! | ATATCTTTTTATAGTTACAA+TGG | + | chr1_2:59837751-59837770 | Msa0081350:intron | 15.0% |
| !! | TTTAATTAATATAATGCTGA+AGG | + | chr1_2:59837847-59837866 | Msa0081350:intron | 15.0% |
| !!! | AAAGTATTGTTATTAAACTT+TGG | - | chr1_2:59838272-59838291 | None:intergenic | 15.0% |
| !! | TATTTAGTATAATATAGCAT+TGG | + | chr1_2:59839451-59839470 | Msa0081350:intron | 15.0% |
| !! | TGATAAGAATTACAAATTTA+TGG | - | chr1_2:59839487-59839506 | None:intergenic | 15.0% |
| !!! | ATTTTTTAATCAGATAAGAA+TGG | - | chr1_2:59840819-59840838 | None:intergenic | 15.0% |
| !!! | TTTTTGTTTTTCAACTATTG+TGG | - | chr1_2:59837218-59837237 | None:intergenic | 20.0% |
| !!! | TTCTTGATTTGTTTTAAGTA+AGG | - | chr1_2:59837246-59837265 | None:intergenic | 20.0% |
| !! | ATTTCATACAATAACTCAAA+GGG | - | chr1_2:59837613-59837632 | None:intergenic | 20.0% |
| !!! | TTTACTCTTTTTAACACAAT+AGG | - | chr1_2:59838103-59838122 | None:intergenic | 20.0% |
| !! | GTTTAATAACAATACTTTCA+AGG | + | chr1_2:59838274-59838293 | Msa0081350:intron | 20.0% |
| !!! | TTCTTTATCCTACATAATTT+TGG | + | chr1_2:59838563-59838582 | Msa0081350:intron | 20.0% |
| !!! | TGTTTTAATTGTCATGAATT+TGG | + | chr1_2:59838655-59838674 | Msa0081350:intron | 20.0% |
| !!! | TAGGAATTTTATAGATAAGA+GGG | - | chr1_2:59838807-59838826 | None:intergenic | 20.0% |
| !!! | ATAGGAATTTTATAGATAAG+AGG | - | chr1_2:59838808-59838827 | None:intergenic | 20.0% |
| !!! | AAATCTTAAGGGATTTTAAT+AGG | - | chr1_2:59838826-59838845 | None:intergenic | 20.0% |
| !!! | AAAATCCCTTAAGATTTTTA+TGG | + | chr1_2:59838829-59838848 | Msa0081350:intron | 20.0% |
| !! | CTAATCAATATATGTATATC+AGG | + | chr1_2:59839125-59839144 | Msa0081350:intron | 20.0% |
| !! | CTTTATCTTGTATTACATTA+AGG | + | chr1_2:59839974-59839993 | Msa0081350:intron | 20.0% |
| ! | AATTTGCATTCTTAGTTTCT+GGG | + | chr1_2:59837383-59837402 | Msa0081350:CDS | 25.0% |
| ! | CATTTCATACAATAACTCAA+AGG | - | chr1_2:59837614-59837633 | None:intergenic | 25.0% |
| ! | AATTCACCAACTAAAGTAAT+GGG | - | chr1_2:59837654-59837673 | None:intergenic | 25.0% |
| ! | AAATTCACCAACTAAAGTAA+TGG | - | chr1_2:59837655-59837674 | None:intergenic | 25.0% |
| !! | AAAGAGAATCTAAAATGATG+AGG | - | chr1_2:59837696-59837715 | None:intergenic | 25.0% |
| ! | TAAAATGTAACCACATATGT+CGG | - | chr1_2:59837946-59837965 | None:intergenic | 25.0% |
| ! | GACTTTCTTCTAAATATAGT+AGG | - | chr1_2:59838321-59838340 | None:intergenic | 25.0% |
| ! | TATATTTAGAAGAAAGTCGA+TGG | + | chr1_2:59838323-59838342 | Msa0081350:intron | 25.0% |
| ! | AACAAATGCCAAAATTATGT+AGG | - | chr1_2:59838574-59838593 | None:intergenic | 25.0% |
| !! | AGGAATTTTATAGATAAGAG+GGG | - | chr1_2:59838806-59838825 | None:intergenic | 25.0% |
| ! | ATTCCAAATGATCAATCTTT+CGG | - | chr1_2:59838921-59838940 | None:intergenic | 25.0% |
| !! | AGTAATATGTGTGTGATTTT+TGG | + | chr1_2:59838950-59838969 | Msa0081350:intron | 25.0% |
| ! | AATTTCGTGGACAAAAAATA+TGG | + | chr1_2:59838999-59839018 | Msa0081350:CDS | 25.0% |
| ! | ACAACAACATAAAGAAACAT+GGG | - | chr1_2:59839080-59839099 | None:intergenic | 25.0% |
| ! | AACAACAACATAAAGAAACA+TGG | - | chr1_2:59839081-59839100 | None:intergenic | 25.0% |
| ! | ATATATAAGTGTCTAGTCAA+TGG | - | chr1_2:59839315-59839334 | None:intergenic | 25.0% |
| ! | TTGTGTAGAATTGATATATC+TGG | + | chr1_2:59839353-59839372 | Msa0081350:intron | 25.0% |
| !! | TGTTTTACGTCTTTGATAAA+AGG | + | chr1_2:59839643-59839662 | Msa0081350:intron | 25.0% |
| ! | CTGATATCAAATATTTGCAA+AGG | - | chr1_2:59839678-59839697 | None:intergenic | 25.0% |
| !! | ATTTTGTTGAGACAACTTTT+TGG | - | chr1_2:59839738-59839757 | None:intergenic | 25.0% |
| ! | AAAAAGTTGTCTCAACAAAA+TGG | + | chr1_2:59839737-59839756 | Msa0081350:CDS | 25.0% |
| !! | ACTATCGATTATTTCATCTA+AGG | - | chr1_2:59840522-59840541 | None:intergenic | 25.0% |
| !! | TTGTTTTTCAACTATTGTGG+TGG | - | chr1_2:59837215-59837234 | None:intergenic | 30.0% |
| GAATTTGCATTCTTAGTTTC+TGG | + | chr1_2:59837382-59837401 | Msa0081350:CDS | 30.0% | |
| ATATGAGGTTGCAATGAATT+AGG | - | chr1_2:59837469-59837488 | None:intergenic | 30.0% | |
| TAATTCATTGCAACCTCATA+TGG | + | chr1_2:59837468-59837487 | Msa0081350:CDS | 30.0% | |
| AGGGTATAATATTCTATGCA+AGG | - | chr1_2:59837594-59837613 | None:intergenic | 30.0% | |
| AACAAGCATAAGAATACTCT+GGG | - | chr1_2:59838050-59838069 | None:intergenic | 30.0% | |
| AAACAAGCATAAGAATACTC+TGG | - | chr1_2:59838051-59838070 | None:intergenic | 30.0% | |
| ! | AAATAGTTGGCTTATTCATC+TGG | + | chr1_2:59838228-59838247 | Msa0081350:CDS | 30.0% |
| CTCTTTCTTTAACTATGCTA+TGG | + | chr1_2:59838369-59838388 | Msa0081350:intron | 30.0% | |
| ACACTTTATGAATTCCTGTA+GGG | + | chr1_2:59838407-59838426 | Msa0081350:intron | 30.0% | |
| ! | TTGACTTTCCATGTATTTTG+AGG | - | chr1_2:59838492-59838511 | None:intergenic | 30.0% |
| GTAGGATAAAGAAAATACCT+GGG | - | chr1_2:59838556-59838575 | None:intergenic | 30.0% | |
| TGTAGGATAAAGAAAATACC+TGG | - | chr1_2:59838557-59838576 | None:intergenic | 30.0% | |
| ACTGGAATAGAGTCAAATTA+AGG | + | chr1_2:59838712-59838731 | Msa0081350:CDS | 30.0% | |
| ! | TCCCTTAAGATTTTTATGGA+AGG | + | chr1_2:59838833-59838852 | Msa0081350:intron | 30.0% |
| GCCTTCCATAAAAATCTTAA+GGG | - | chr1_2:59838837-59838856 | None:intergenic | 30.0% | |
| AGCCTTCCATAAAAATCTTA+AGG | - | chr1_2:59838838-59838857 | None:intergenic | 30.0% | |
| !!! | GATTTTTGGTTCTTTTATCC+AGG | + | chr1_2:59838964-59838983 | Msa0081350:intron | 30.0% |
| TTGTTCAATCTTAATGTTCG+TGG | + | chr1_2:59839096-59839115 | Msa0081350:intron | 30.0% | |
| !! | CACTTCACTTTTGAAGATTT+TGG | - | chr1_2:59839222-59839241 | None:intergenic | 30.0% |
| TGTAGAATTGATATATCTGG+AGG | + | chr1_2:59839356-59839375 | Msa0081350:intron | 30.0% | |
| ACTAATTCTCCTAAAAGCTT+AGG | + | chr1_2:59839579-59839598 | Msa0081350:intron | 30.0% | |
| !!! | CAGTACTGTTTTGAAATTGT+AGG | + | chr1_2:59839695-59839714 | Msa0081350:intron | 30.0% |
| !! | AACTTTTTGGCAGATTTTTC+TGG | - | chr1_2:59839725-59839744 | None:intergenic | 30.0% |
| !! | ATTTCTGAAGTCTGTTTCAA+AGG | - | chr1_2:59840324-59840343 | None:intergenic | 30.0% |
| GGATTATTCTCTGATAACAA+TGG | - | chr1_2:59840574-59840593 | None:intergenic | 30.0% | |
| AATTGGCTGTATAACAAAAC+AGG | - | chr1_2:59840595-59840614 | None:intergenic | 30.0% | |
| AATACACCCAAACAAATACA+AGG | - | chr1_2:59840766-59840785 | None:intergenic | 30.0% | |
| TTGATATACCAACACTCTAT+CGG | - | chr1_2:59840860-59840879 | None:intergenic | 30.0% | |
| AAAAAAGACAACACACGACA+AGG | + | chr1_2:59837141-59837160 | Msa0081350:five_prime_UTR | 35.0% | |
| AAAAAGACAACACACGACAA+GGG | + | chr1_2:59837142-59837161 | Msa0081350:five_prime_UTR | 35.0% | |
| ! | CTATTGTGGTGGAAACAAAA+AGG | - | chr1_2:59837204-59837223 | None:intergenic | 35.0% |
| TGCTACTACTGATAATAGTG+AGG | - | chr1_2:59837305-59837324 | None:intergenic | 35.0% | |
| ! | TGCAAGGTTCTAATACAAAG+AGG | - | chr1_2:59837578-59837597 | None:intergenic | 35.0% |
| !! | AATGGGTTAGCTTCAAAATG+TGG | - | chr1_2:59837637-59837656 | None:intergenic | 35.0% |
| AGCTAACCCATTACTTTAGT+TGG | + | chr1_2:59837645-59837664 | Msa0081350:intron | 35.0% | |
| TGCCTTATATTGTTGTGAAG+TGG | + | chr1_2:59837805-59837824 | Msa0081350:intron | 35.0% | |
| CTCCACTTCACAACAATATA+AGG | - | chr1_2:59837810-59837829 | None:intergenic | 35.0% | |
| CTTATATTGTTGTGAAGTGG+AGG | + | chr1_2:59837808-59837827 | Msa0081350:intron | 35.0% | |
| TGTGCATAACTCAAACTCTT+CGG | + | chr1_2:59837883-59837902 | Msa0081350:intron | 35.0% | |
| ATTCAAATCCACGATCCAAA+TGG | - | chr1_2:59838201-59838220 | None:intergenic | 35.0% | |
| TTGAATCTGGTGCAAATAGT+TGG | + | chr1_2:59838215-59838234 | Msa0081350:CDS | 35.0% | |
| GACACTTTATGAATTCCTGT+AGG | + | chr1_2:59838406-59838425 | Msa0081350:intron | 35.0% | |
| TACAGAAAAAAGACTCATCG+TGG | + | chr1_2:59838464-59838483 | Msa0081350:CDS | 35.0% | |
| GAAAGTCAAATACCATTCAC+AGG | + | chr1_2:59838503-59838522 | Msa0081350:CDS | 35.0% | |
| TTGCTCAATATTCCTGTGAA+TGG | - | chr1_2:59838518-59838537 | None:intergenic | 35.0% | |
| AATAAACCAGAAGAAAACCC+AGG | + | chr1_2:59838536-59838555 | Msa0081350:CDS | 35.0% | |
| ! | AAAATACCTGGGTTTTCTTC+TGG | - | chr1_2:59838545-59838564 | None:intergenic | 35.0% |
| ATAAGTTGCAGCATCAATGA+GGG | - | chr1_2:59838620-59838639 | None:intergenic | 35.0% | |
| AAAGAAATCTGTGCATGGAA+TGG | - | chr1_2:59838691-59838710 | None:intergenic | 35.0% | |
| CAGTTAAAGAAATCTGTGCA+TGG | - | chr1_2:59838696-59838715 | None:intergenic | 35.0% | |
| CATGCACAGATTTCTTTAAC+TGG | + | chr1_2:59838694-59838713 | Msa0081350:intron | 35.0% | |
| !! | GTCAAATTAAGGTACTGTGA+TGG | + | chr1_2:59838723-59838742 | Msa0081350:CDS | 35.0% |
| AGCAATTAACTCAGCACTAA+AGG | - | chr1_2:59838897-59838916 | None:intergenic | 35.0% | |
| CTACCGAAAGATTGATCATT+TGG | + | chr1_2:59838915-59838934 | Msa0081350:intron | 35.0% | |
| ATAGAGGAACTATTGTCTCA+AGG | + | chr1_2:59839031-59839050 | Msa0081350:CDS | 35.0% | |
| GAACTCATCACAGTGTATTA+TGG | - | chr1_2:59839187-59839206 | None:intergenic | 35.0% | |
| !! | AAGATTTTGGTAACAAGCTC+TGG | - | chr1_2:59839209-59839228 | None:intergenic | 35.0% |
| ACAATGAGGAATATGTTTGG+AGG | + | chr1_2:59839383-59839402 | Msa0081350:CDS | 35.0% | |
| TTGAAGAACTGTGTGGTTAA+TGG | - | chr1_2:59839539-59839558 | None:intergenic | 35.0% | |
| ! | ACTTGACAACCTAAGCTTTT+AGG | - | chr1_2:59839591-59839610 | None:intergenic | 35.0% |
| GAATGAGAATTACCGAAGTT+GGG | - | chr1_2:59839764-59839783 | None:intergenic | 35.0% | |
| TGAATGAGAATTACCGAAGT+TGG | - | chr1_2:59839765-59839784 | None:intergenic | 35.0% | |
| TGCTTCGGATATTCAAAACT+TGG | - | chr1_2:59839830-59839849 | None:intergenic | 35.0% | |
| ACATGAACTATGTTTCCATC+AGG | + | chr1_2:59840053-59840072 | Msa0081350:intron | 35.0% | |
| AGTAGAGATTGAAAACACCT+TGG | - | chr1_2:59840179-59840198 | None:intergenic | 35.0% | |
| TTCTCAAGATCATCTCAAAC+TGG | + | chr1_2:59840368-59840387 | Msa0081350:CDS | 35.0% | |
| CAAACCTTGTCATCAATAAG+AGG | - | chr1_2:59840464-59840483 | None:intergenic | 35.0% | |
| !! | CAATAGCTTTGACAACTTCT+CGG | - | chr1_2:59840647-59840666 | None:intergenic | 35.0% |
| CTCTTCTAAACACCAGATTA+TGG | - | chr1_2:59840698-59840717 | None:intergenic | 35.0% | |
| TTCCCTCCTTGTATTTGTTT+GGG | + | chr1_2:59840757-59840776 | Msa0081350:three_prime_UTR | 35.0% | |
| ! | CAATTTTACCGATAGAGTGT+TGG | + | chr1_2:59840849-59840868 | Msa0081350:three_prime_UTR | 35.0% |
| ! | ATTCAAGGAGCTGATTCCAA+AGG | + | chr1_2:59837505-59837524 | Msa0081350:CDS | 40.0% |
| TCTTATCACCACAGTCTGTT+TGG | + | chr1_2:59838156-59838175 | Msa0081350:intron | 40.0% | |
| AACATTGCCTGGTTACCATT+TGG | + | chr1_2:59838183-59838202 | Msa0081350:CDS | 40.0% | |
| TTGGATCGTGGATTTGAATC+TGG | + | chr1_2:59838202-59838221 | Msa0081350:CDS | 40.0% | |
| ! | TAGTTGGCTTATTCATCTGG+AGG | + | chr1_2:59838231-59838250 | Msa0081350:CDS | 40.0% |
| CTTTATGAATTCCTGTAGGG+AGG | + | chr1_2:59838410-59838429 | Msa0081350:intron | 40.0% | |
| TCGTGGTTCCTCAAAATACA+TGG | + | chr1_2:59838481-59838500 | Msa0081350:CDS | 40.0% | |
| CATAAGTTGCAGCATCAATG+AGG | - | chr1_2:59838621-59838640 | None:intergenic | 40.0% | |
| ! | GTTCTTTTATCCAGGCTGAA+GGG | + | chr1_2:59838972-59838991 | Msa0081350:intron | 40.0% |
| !! | AATATGGCTTGCTGCAATAG+AGG | + | chr1_2:59839015-59839034 | Msa0081350:CDS | 40.0% |
| AGAAACATGGGAAACCTGTT+CGG | - | chr1_2:59839068-59839087 | None:intergenic | 40.0% | |
| ! | GTGAAGTGTTTAAGTGATGC+AGG | + | chr1_2:59839234-59839253 | Msa0081350:CDS | 40.0% |
| CGCACAATGAGGAATATGTT+TGG | + | chr1_2:59839380-59839399 | Msa0081350:CDS | 40.0% | |
| ! | GTGGTTAATGGTTTGGAATG+TGG | - | chr1_2:59839527-59839546 | None:intergenic | 40.0% |
| GAACTGTGTGGTTAATGGTT+TGG | - | chr1_2:59839534-59839553 | None:intergenic | 40.0% | |
| CCAAAACTTGAAGAACTGTG+TGG | - | chr1_2:59839546-59839565 | None:intergenic | 40.0% | |
| !! | CCACACAGTTCTTCAAGTTT+TGG | + | chr1_2:59839543-59839562 | Msa0081350:intron | 40.0% |
| ! | AAGCTTAGGTTGTCAAGTGA+AGG | + | chr1_2:59839593-59839612 | Msa0081350:intron | 40.0% |
| CAACAAAATGGACCCAACTT+CGG | + | chr1_2:59839749-59839768 | Msa0081350:CDS | 40.0% | |
| !! | ACCATTGTTTCTACTCAACG+CGG | + | chr1_2:59839900-59839919 | Msa0081350:CDS | 40.0% |
| AGAGATTGAAAACACCTTGG+AGG | - | chr1_2:59840176-59840195 | None:intergenic | 40.0% | |
| ! | CTCTCCTCTTATTGATGACA+AGG | + | chr1_2:59840457-59840476 | Msa0081350:CDS | 40.0% |
| TTATGGCAGCTATTGTCACA+GGG | - | chr1_2:59840681-59840700 | None:intergenic | 40.0% | |
| ATTATGGCAGCTATTGTCAC+AGG | - | chr1_2:59840682-59840701 | None:intergenic | 40.0% | |
| TGACAATAGCTGCCATAATC+TGG | + | chr1_2:59840683-59840702 | Msa0081350:CDS | 40.0% | |
| CTTCCCTCCTTGTATTTGTT+TGG | + | chr1_2:59840756-59840775 | Msa0081350:three_prime_UTR | 40.0% | |
| CACCCAAACAAATACAAGGA+GGG | - | chr1_2:59840762-59840781 | None:intergenic | 40.0% | |
| ACACCCAAACAAATACAAGG+AGG | - | chr1_2:59840763-59840782 | None:intergenic | 40.0% | |
| !!! | GAAGCTGCTGCTGATTTTGT+TGG | + | chr1_2:59837354-59837373 | Msa0081350:CDS | 45.0% |
| ! | GTTTCTGGGTTTATCTCCTC+TGG | + | chr1_2:59837397-59837416 | Msa0081350:CDS | 45.0% |
| ! | AAGTGTTGTGTCAGATCCAG+AGG | - | chr1_2:59837416-59837435 | None:intergenic | 45.0% |
| AGAGTGAGGTCTACCATATG+AGG | - | chr1_2:59837484-59837503 | None:intergenic | 45.0% | |
| GTAGACCTCACTCTCATTCA+AGG | + | chr1_2:59837490-59837509 | Msa0081350:CDS | 45.0% | |
| CTACACTGACACATAGACAC+TGG | - | chr1_2:59837994-59838013 | None:intergenic | 45.0% | |
| GACATACACAACATGGACAG+CGG | - | chr1_2:59838020-59838039 | None:intergenic | 45.0% | |
| GCTGTCCATGTTGTGTATGT+CGG | + | chr1_2:59838019-59838038 | Msa0081350:intron | 45.0% | |
| !! | AAGCACCGACATACACAACA+TGG | - | chr1_2:59838027-59838046 | None:intergenic | 45.0% |
| ATCACCACAGTCTGTTTGGA+TGG | + | chr1_2:59838160-59838179 | Msa0081350:intron | 45.0% | |
| TGTTCCATCCAAACAGACTG+TGG | - | chr1_2:59838167-59838186 | None:intergenic | 45.0% | |
| TGTTTGGATGGAACATTGCC+TGG | + | chr1_2:59838172-59838191 | Msa0081350:CDS | 45.0% | |
| TATGAATTCCTGTAGGGAGG+AGG | + | chr1_2:59838413-59838432 | Msa0081350:intron | 45.0% | |
| TGCTGGAGACAGTGAAAATG+AGG | + | chr1_2:59838755-59838774 | Msa0081350:CDS | 45.0% | |
| ! | GGTTCTTTTATCCAGGCTGA+AGG | + | chr1_2:59838971-59838990 | Msa0081350:intron | 45.0% |
| ! | TGGAGGTGTAGTTCAGTTAC+AGG | + | chr1_2:59839400-59839419 | Msa0081350:CDS | 45.0% |
| ! | CATTCTGAGGAAAGAAGCAC+TGG | - | chr1_2:59839861-59839880 | None:intergenic | 45.0% |
| GTGCTTCTTTCCTCAGAATG+TGG | + | chr1_2:59839861-59839880 | Msa0081350:intron | 45.0% | |
| ACATGTTCGACCACATTCTG+AGG | - | chr1_2:59839874-59839893 | None:intergenic | 45.0% | |
| TCTCAAATTCAGCTCCTCCA+AGG | + | chr1_2:59840159-59840178 | Msa0081350:CDS | 45.0% | |
| TCTCCAACAGCAACTGCAAT+TGG | - | chr1_2:59840612-59840631 | None:intergenic | 45.0% | |
| AGCTATTGTCACAGGGGTAA+GGG | - | chr1_2:59840674-59840693 | None:intergenic | 45.0% | |
| TATGGCAGCTATTGTCACAG+GGG | - | chr1_2:59840680-59840699 | None:intergenic | 45.0% | |
| CAGCTCCTTGAATGAGAGTG+AGG | - | chr1_2:59837498-59837517 | None:intergenic | 50.0% | |
| GAGAGAGATACCAGCTCCTT+TGG | - | chr1_2:59837524-59837543 | None:intergenic | 50.0% | |
| CGACATCTCACCGACATATG+TGG | + | chr1_2:59837933-59837952 | Msa0081350:intron | 50.0% | |
| CCACGATCCAAATGGTAACC+AGG | - | chr1_2:59838193-59838212 | None:intergenic | 50.0% | |
| CCTGGTTACCATTTGGATCG+TGG | + | chr1_2:59838190-59838209 | Msa0081350:CDS | 50.0% | |
| AATTCCTGTAGGGAGGAGGA+TGG | + | chr1_2:59838417-59838436 | Msa0081350:intron | 50.0% | |
| !! | TGTGATGGAGCGTCTTTTGC+TGG | + | chr1_2:59838738-59838757 | Msa0081350:CDS | 50.0% |
| GAAATTGAAGCCCTTCAGCC+TGG | - | chr1_2:59838985-59839004 | None:intergenic | 50.0% | |
| GCTGAAGGGCTTCAATTTCG+TGG | + | chr1_2:59838986-59839005 | Msa0081350:CDS | 50.0% | |
| AGGAATGCAGAATGCCGAAC+AGG | + | chr1_2:59839051-59839070 | Msa0081350:CDS | 50.0% | |
| GTATATCAGGCCCTTCTCTC+TGG | + | chr1_2:59839138-59839157 | Msa0081350:intron | 50.0% | |
| TATCTGGAGGACGCACAATG+AGG | + | chr1_2:59839369-59839388 | Msa0081350:CDS | 50.0% | |
| GCACTGGACGAAACATGCTT+CGG | - | chr1_2:59839845-59839864 | None:intergenic | 50.0% | |
| GCCGCGTTGAGTAGAAACAA+TGG | - | chr1_2:59839904-59839923 | None:intergenic | 50.0% | |
| ATGACGTGTGGCAGGTAACA+TGG | + | chr1_2:59839926-59839945 | Msa0081350:intron | 50.0% | |
| !! | CTAAACTGGCTTGGACCTGA+TGG | - | chr1_2:59840071-59840090 | None:intergenic | 50.0% |
| !! | TCTTTGGGGCTAAACTGGCT+TGG | - | chr1_2:59840080-59840099 | None:intergenic | 50.0% |
| !! | AGCTGTCTTTGGGGCTAAAC+TGG | - | chr1_2:59840085-59840104 | None:intergenic | 50.0% |
| AGTCATTCCAAGAGCCAAGG+GGG | - | chr1_2:59840110-59840129 | None:intergenic | 50.0% | |
| CAGTCATTCCAAGAGCCAAG+GGG | - | chr1_2:59840111-59840130 | None:intergenic | 50.0% | |
| GCAGTCATTCCAAGAGCCAA+GGG | - | chr1_2:59840112-59840131 | None:intergenic | 50.0% | |
| TGCAGTCATTCCAAGAGCCA+AGG | - | chr1_2:59840113-59840132 | None:intergenic | 50.0% | |
| TCATTGCCAGTCTGAGAGAC+AGG | + | chr1_2:59840415-59840434 | Msa0081350:CDS | 50.0% | |
| ATGTCTCCTGTCTCTCAGAC+TGG | - | chr1_2:59840424-59840443 | None:intergenic | 50.0% | |
| AGTCTGAGAGACAGGAGACA+TGG | + | chr1_2:59840423-59840442 | Msa0081350:CDS | 50.0% | |
| CAGCCAATTGCAGTTGCTGT+TGG | + | chr1_2:59840606-59840625 | Msa0081350:intron | 50.0% | |
| ! | TTGCAGTTGCTGTTGGAGAC+TGG | + | chr1_2:59840613-59840632 | Msa0081350:CDS | 50.0% |
| CAGCTATTGTCACAGGGGTA+AGG | - | chr1_2:59840675-59840694 | None:intergenic | 50.0% | |
| ! | GGAGCTGATTCCAAAGGAGC+TGG | + | chr1_2:59837511-59837530 | Msa0081350:CDS | 55.0% |
| ! | CGCAGAGCATCCAGAGAGAA+GGG | - | chr1_2:59839151-59839170 | None:intergenic | 55.0% |
| CCTTCTCTCTGGATGCTCTG+CGG | + | chr1_2:59839149-59839168 | Msa0081350:CDS | 55.0% | |
| CTTCTCTCTGGATGCTCTGC+GGG | + | chr1_2:59839150-59839169 | Msa0081350:CDS | 55.0% | |
| TCAACGCGGCTTATGACGTG+TGG | + | chr1_2:59839914-59839933 | Msa0081350:CDS | 55.0% | |
| AAGGGGGTCAGCTGTCTTTG+GGG | - | chr1_2:59840094-59840113 | None:intergenic | 55.0% | |
| CAAGGGGGTCAGCTGTCTTT+GGG | - | chr1_2:59840095-59840114 | None:intergenic | 55.0% | |
| CACACCATCCTCCTCCCTAC+AGG | - | chr1_2:59838424-59838443 | None:intergenic | 60.0% | |
| ! | CCGCAGAGCATCCAGAGAGA+AGG | - | chr1_2:59839152-59839171 | None:intergenic | 60.0% |
| CCAAGGGGGTCAGCTGTCTT+TGG | - | chr1_2:59840096-59840115 | None:intergenic | 60.0% | |
| CCAAAGACAGCTGACCCCCT+TGG | + | chr1_2:59840093-59840112 | Msa0081350:CDS | 60.0% | |
| CTCTCTGGATGCTCTGCGGG+TGG | + | chr1_2:59839153-59839172 | Msa0081350:CDS | 65.0% | |
| CGCGGCTTATGACGTGTGGC+AGG | + | chr1_2:59839918-59839937 | Msa0081350:CDS | 65.0% | |
| ! | CAGCTGACCCCCTTGGCTCT+TGG | + | chr1_2:59840100-59840119 | Msa0081350:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 59837104 | 59840919 | 59837104 | ID=Msa0081350;Name=Msa0081350 |
| chr1_2 | mRNA | 59837104 | 59840919 | 59837104 | ID=Msa0081350-mRNA-1;Parent=Msa0081350;Name=Msa0081350-mRNA-1;_AED=0.15;_eAED=0.15;_QI=242|1|1|1|1|1|12|197|414 |
| chr1_2 | exon | 59837104 | 59837532 | 59837104 | ID=Msa0081350-mRNA-1:exon:19438;Parent=Msa0081350-mRNA-1 |
| chr1_2 | exon | 59838170 | 59838252 | 59838170 | ID=Msa0081350-mRNA-1:exon:19439;Parent=Msa0081350-mRNA-1 |
| chr1_2 | exon | 59838428 | 59838557 | 59838428 | ID=Msa0081350-mRNA-1:exon:19440;Parent=Msa0081350-mRNA-1 |
| chr1_2 | exon | 59838703 | 59838776 | 59838703 | ID=Msa0081350-mRNA-1:exon:19441;Parent=Msa0081350-mRNA-1 |
| chr1_2 | exon | 59838986 | 59839072 | 59838986 | ID=Msa0081350-mRNA-1:exon:19442;Parent=Msa0081350-mRNA-1 |
| chr1_2 | exon | 59839147 | 59839271 | 59839147 | ID=Msa0081350-mRNA-1:exon:19443;Parent=Msa0081350-mRNA-1 |
| chr1_2 | exon | 59839361 | 59839421 | 59839361 | ID=Msa0081350-mRNA-1:exon:19444;Parent=Msa0081350-mRNA-1 |
| chr1_2 | exon | 59839717 | 59839770 | 59839717 | ID=Msa0081350-mRNA-1:exon:19445;Parent=Msa0081350-mRNA-1 |
| chr1_2 | exon | 59839862 | 59839939 | 59839862 | ID=Msa0081350-mRNA-1:exon:19446;Parent=Msa0081350-mRNA-1 |
| chr1_2 | exon | 59840075 | 59840180 | 59840075 | ID=Msa0081350-mRNA-1:exon:19447;Parent=Msa0081350-mRNA-1 |
| chr1_2 | exon | 59840333 | 59840478 | 59840333 | ID=Msa0081350-mRNA-1:exon:19448;Parent=Msa0081350-mRNA-1 |
| chr1_2 | exon | 59840609 | 59840919 | 59840609 | ID=Msa0081350-mRNA-1:exon:19449;Parent=Msa0081350-mRNA-1 |
| chr1_2 | five_prime_UTR | 59837104 | 59837345 | 59837104 | ID=Msa0081350-mRNA-1:five_prime_utr;Parent=Msa0081350-mRNA-1 |
| chr1_2 | CDS | 59837346 | 59837532 | 59837346 | ID=Msa0081350-mRNA-1:cds;Parent=Msa0081350-mRNA-1 |
| chr1_2 | CDS | 59838170 | 59838252 | 59838170 | ID=Msa0081350-mRNA-1:cds;Parent=Msa0081350-mRNA-1 |
| chr1_2 | CDS | 59838428 | 59838557 | 59838428 | ID=Msa0081350-mRNA-1:cds;Parent=Msa0081350-mRNA-1 |
| chr1_2 | CDS | 59838703 | 59838776 | 59838703 | ID=Msa0081350-mRNA-1:cds;Parent=Msa0081350-mRNA-1 |
| chr1_2 | CDS | 59838986 | 59839072 | 59838986 | ID=Msa0081350-mRNA-1:cds;Parent=Msa0081350-mRNA-1 |
| chr1_2 | CDS | 59839147 | 59839271 | 59839147 | ID=Msa0081350-mRNA-1:cds;Parent=Msa0081350-mRNA-1 |
| chr1_2 | CDS | 59839361 | 59839421 | 59839361 | ID=Msa0081350-mRNA-1:cds;Parent=Msa0081350-mRNA-1 |
| chr1_2 | CDS | 59839717 | 59839770 | 59839717 | ID=Msa0081350-mRNA-1:cds;Parent=Msa0081350-mRNA-1 |
| chr1_2 | CDS | 59839862 | 59839939 | 59839862 | ID=Msa0081350-mRNA-1:cds;Parent=Msa0081350-mRNA-1 |
| chr1_2 | CDS | 59840075 | 59840180 | 59840075 | ID=Msa0081350-mRNA-1:cds;Parent=Msa0081350-mRNA-1 |
| chr1_2 | CDS | 59840333 | 59840478 | 59840333 | ID=Msa0081350-mRNA-1:cds;Parent=Msa0081350-mRNA-1 |
| chr1_2 | CDS | 59840609 | 59840722 | 59840609 | ID=Msa0081350-mRNA-1:cds;Parent=Msa0081350-mRNA-1 |
| chr1_2 | three_prime_UTR | 59840723 | 59840919 | 59840723 | ID=Msa0081350-mRNA-1:three_prime_utr;Parent=Msa0081350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
