AlfalfaGEDB | Msa1006560

M. sativa cultivar zhongmu-4 / Msa1006560

KEGG: K04733
GO: -
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1006560	PNX60734.1	83.333	150	23	1	117	266	72	219	3.95e-82	256

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1006560	sp\|Q9LP24\|Y1571_ARATH	50.413	121	55	2	117	235	1003	1120	4.40e-30	122

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1006560	A0A2K3K372	83.333	150	23	1	117	266	72	219	1.89e-82	256

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0458700	Msa1006560	0.808178	3.518495e-50	-8.615850e-47
Msa0865370	Msa1006560	0.800930	1.143570e-48	-8.615850e-47
Msa0865390	Msa1006560	0.823319	1.476748e-53	-8.615850e-47
Msa1006440	Msa1006560	0.833703	4.580332e-56	-8.615850e-47
Msa1006560	Msa1006630	0.904519	1.127917e-79	-8.615850e-47
Msa1006560	Msa1423990	0.812027	5.212166e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1006560	MtrunA17_Chr7g0217061	90.000	150	15	0	117	266	641	790	4.73e-86	272
Msa1006560	MtrunA17_Chr7g0217061	60.000	165	30	2	2	130	375	539	5.74e-57	194
Msa1006560	MtrunA17_Chr7g0217081	82.000	150	27	0	117	266	718	867	3.16e-78	253
Msa1006560	MtrunA17_Chr7g0217081	50.000	148	55	4	2	130	469	616	1.26e-34	132
Msa1006560	MtrunA17_Chr7g0215641	77.483	151	34	0	117	267	625	775	2.89e-76	246
Msa1006560	MtrunA17_Chr7g0215641	51.515	165	43	5	2	130	360	523	3.00e-38	142
Msa1006560	MtrunA17_Chr7g0215651	80.667	150	29	0	117	266	591	740	5.33e-76	244
Msa1006560	MtrunA17_Chr7g0215651	48.387	155	50	4	2	130	339	489	3.40e-35	133
Msa1006560	MtrunA17_Chr7g0215681	80.667	150	29	0	117	266	638	787	1.66e-75	244
Msa1006560	MtrunA17_Chr7g0215681	70.930	86	21	2	49	130	451	536	2.81e-33	128

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1006560	AT1G35710.1	50.413	121	55	2	117	235	1003	1120	4.48e-31	122
Msa1006560	AT4G08850.1	49.180	122	56	3	117	235	927	1045	5.73e-29	115
Msa1006560	AT4G08850.1	40.845	71	41	1	46	116	736	805	1.31e-11	65.1
Msa1006560	AT1G17230.2	33.523	176	90	5	64	230	911	1068	4.70e-19	87.0
Msa1006560	AT1G17230.1	33.523	176	90	5	64	230	911	1068	5.33e-19	87.0
Msa1006560	AT2G33170.2	35.928	167	81	4	72	230	947	1095	5.82e-19	87.0
Msa1006560	AT2G33170.1	35.928	167	81	4	72	230	947	1095	5.82e-19	87.0
Msa1006560	AT1G34420.1	34.286	175	86	5	84	230	786	959	6.09e-18	84.0
Msa1006560	AT5G63930.1	30.357	168	88	4	72	230	927	1074	6.58e-16	77.8
Msa1006560	AT5G63930.2	30.357	168	88	4	72	230	863	1010	7.48e-16	77.8

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Find 56 sgRNAs with CRISPR-Local

Find 852 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTGCATTACACACATT+TGG	0.304010	7_1:-5362697	None:intergenic
AAATAATCAGCAATGGATGA+AGG	0.498030	7_1:-5362826	None:intergenic
AAATTAAACAGTGAACATTA+TGG	0.416611	7_1:-5362727	None:intergenic
AACAAAACAACAAAGAAGAA+TGG	0.430356	7_1:+5361380	Msa1006560:CDS
AACAGTGAACATTATGGATA+TGG	0.289100	7_1:-5362721	None:intergenic
AACTATTGAAATAAACACTT+TGG	0.395309	7_1:+5362567	Msa1006560:exon
AAGTGTGATGTATATAGTTT+CGG	0.439159	7_1:+5362219	Msa1006560:CDS
AAGTTGCATTACACACATTT+GGG	0.379470	7_1:-5362696	None:intergenic
AATAATCAGCAATGGATGAA+GGG	0.576556	7_1:-5362825	None:intergenic
AATAGGGAGATGTGCAAGGT+TGG	0.489694	7_1:-5361220	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CGGTTAAATAATAACTCCAT+TGG	+	chr7_1:5351875-5351894	Msa1006560:intron	30.0%
AGTATTCAATGAAATCGGAA+AGG	-	chr7_1:5351906-5351925	None:intergenic	30.0%
TGGGATAAAATTTGAAGGAA+GGG	-	chr7_1:5351978-5351997	None:intergenic	30.0%
TTGGGATAAAATTTGAAGGA+AGG	-	chr7_1:5351979-5351998	None:intergenic	30.0%
TTTCTAGATACGTCTAGTAT+GGG	-	chr7_1:5352061-5352080	None:intergenic	30.0%
TTTGTTTCAGATTATCAGGA+TGG	-	chr7_1:5352298-5352317	None:intergenic	30.0%
TGATACATAGAGTGTATTCT+TGG	-	chr7_1:5352569-5352588	None:intergenic	30.0%
AGAATACACTCTATGTATCA+AGG	+	chr7_1:5352569-5352588	Msa1006560:intron	30.0%
GCCTAAACATAACATAATCA+TGG	+	chr7_1:5352591-5352610	Msa1006560:intron	30.0%
GCCATGATTATGTTATGTTT+AGG	-	chr7_1:5352595-5352614	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	5351869	5362863	5351869	ID=Msa1006560;Name=Msa1006560
chr7_1	mRNA	5351869	5362863	5351869	ID=Msa1006560-mRNA-1;Parent=Msa1006560;Name=Msa1006560-mRNA-1;_AED=0.47;_eAED=0.47;_QI=0\|0.25\|0.2\|1\|0.25\|0.2\|5\|288\|267
chr7_1	exon	5351869	5351876	5351869	ID=Msa1006560-mRNA-1:exon:1760;Parent=Msa1006560-mRNA-1
chr7_1	exon	5361130	5361268	5361130	ID=Msa1006560-mRNA-1:exon:1761;Parent=Msa1006560-mRNA-1
chr7_1	exon	5361368	5361569	5361368	ID=Msa1006560-mRNA-1:exon:1762;Parent=Msa1006560-mRNA-1
chr7_1	exon	5361924	5361992	5361924	ID=Msa1006560-mRNA-1:exon:1763;Parent=Msa1006560-mRNA-1
chr7_1	exon	5362190	5362863	5362190	ID=Msa1006560-mRNA-1:exon:1764;Parent=Msa1006560-mRNA-1
chr7_1	CDS	5351869	5351876	5351869	ID=Msa1006560-mRNA-1:cds;Parent=Msa1006560-mRNA-1
chr7_1	CDS	5361130	5361268	5361130	ID=Msa1006560-mRNA-1:cds;Parent=Msa1006560-mRNA-1
chr7_1	CDS	5361368	5361569	5361368	ID=Msa1006560-mRNA-1:cds;Parent=Msa1006560-mRNA-1
chr7_1	CDS	5361924	5361992	5361924	ID=Msa1006560-mRNA-1:cds;Parent=Msa1006560-mRNA-1
chr7_1	CDS	5362190	5362575	5362190	ID=Msa1006560-mRNA-1:cds;Parent=Msa1006560-mRNA-1
chr7_1	three_prime_UTR	5362576	5362863	5362576	ID=Msa1006560-mRNA-1:three_prime_utr;Parent=Msa1006560-mRNA-1

Gene Sequence

>Msa1006560

ATGTTGCGGGGGCTCATTCCATTTTGTATATCTGATACTTCTGCAATAATAGGGAACAATGATGTATGTACTAACAAATTCTATGAGAAAACCGAATTCCAACCTTGCACATCTCCCTATTATACAATAATAGGGAAAAGTAATAAAAACAAGCAAGCAAACAAAACAACAAAGAAGAATGGGGATTTCTTTTGTATATGGAATTATGATGGAAAAATAGCGCATGATGACATCATCAAATCAACCGAAGACTTTGACATGAGATATTGCATTGGAACAGGAGCATATGGAAGTGTTTACAAGGCACAATTACCATGTGGAAAAGTTGTTGCCTTGAAGAAACTTCACGCTCGACTCCTTCAATATGATTCGTCCAATCGAACCATAGTTGCTGGAACTATTGGATATATAGCTCCTGAACTTGCCTATACCATGGTTGTGAGTGAAAAGTGTGATGTATATAGTTTCGGAGTAGTGGCACTTGAAACTTTAATGGGAAGGCATCCTGGAGATCTTTTGTCATATCTTCAATTAGCATCAACTCATAGCATGAAATTATGTGAAGTATTAGACCAACGTATTCCACTTCCAAATAATGTGATGGTTTTACTTGACATAATTCGTGTTGCCATAATAGCATTTGCGTGCTTAAATTTCAATCCTTCCTCTCGACCAACAATGAAATGTGTGTCACAGAGTTTTTCCACTGAACTTACGCCATTAAGCATTCTTTTGAGTGAAGTTTCCGTGCAGCAACTCATGAGTCAAGAACTAAAAACATTATTTCAAATCGGGAACTATTGA

Protein sequence

>Msa1006560

MLRGLIPFCISDTSAIIGNNDVCTNKFYEKTEFQPCTSPYYTIIGKSNKNKQANKTTKKNGDFFCIWNYDGKIAHDDIIKSTEDFDMRYCIGTGAYGSVYKAQLPCGKVVALKKLHARLLQYDSSNRTIVAGTIGYIAPELAYTMVVSEKCDVYSFGVVALETLMGRHPGDLLSYLQLASTHSMKLCEVLDQRIPLPNNVMVLLDIIRVAIIAFACLNFNPSSRPTMKCVSQSFSTELTPLSILLSEVSVQQLMSQELKTLFQIGNY*