AlfalfaGEDB | Msa0865390

M. sativa cultivar zhongmu-4 / Msa0865390

KEGG: K15601
GO: GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF02373.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0865390	AES62949.2	78.475	892	145	7	3	852	60	946	0.0	1360

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0865390	sp\|Q9SSE9\|JMJ25_ARATH	54.125	497	205	4	343	832	415	895	3.38e-171	530
Msa0865390	sp\|Q9SSE9\|JMJ25_ARATH	33.224	304	184	5	44	330	32	333	3.17e-43	174

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0865390	G7IE64	78.475	892	145	7	3	852	60	946	0.0	1360

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TFs/TRs:

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Gene ID	Type	Classification
Msa0865390	TR	Jumonji

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0054250	Msa0865390	0.807537	4.816210e-50	-8.615850e-47
Msa0054260	Msa0865390	0.822473	2.325263e-53	-8.615850e-47
Msa0054310	Msa0865390	0.828305	9.681111e-55	-8.615850e-47
Msa0100090	Msa0865390	0.817926	2.558970e-52	-8.615850e-47
Msa0137330	Msa0865390	0.827904	1.209103e-54	-8.615850e-47
Msa0141230	Msa0865390	0.803687	3.094910e-49	-8.615850e-47
Msa0145250	Msa0865390	0.815918	7.225632e-52	-8.615850e-47
Msa0148720	Msa0865390	0.834424	3.021580e-56	-8.615850e-47
Msa0173990	Msa0865390	0.800734	1.253968e-48	-8.615850e-47
Msa0197660	Msa0865390	0.814276	1.673370e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0865390	MtrunA17_Chr1g0211661	79.162	811	122	7	3	771	60	865	0.0	1245
Msa0865390	MtrunA17_Chr1g0211711	67.779	779	215	7	88	836	284	1056	0.0	1074
Msa0865390	MtrunA17_Chr1g0183311	59.410	882	287	9	22	836	10	887	0.0	1011
Msa0865390	MtrunA17_Chr5g0426961	66.760	716	209	5	140	833	129	837	0.0	976
Msa0865390	MtrunA17_Chr5g0448301	81.710	503	91	1	240	741	129	631	0.0	845
Msa0865390	MtrunA17_Chr5g0448301	71.930	171	45	1	1	168	18	188	4.06e-62	223
Msa0865390	MtrunA17_Chr1g0211691	67.541	610	163	8	145	719	336	945	0.0	818
Msa0865390	MtrunA17_Chr5g0420361	60.620	645	203	11	215	812	139	779	0.0	761
Msa0865390	MtrunA17_Chr6g0472441	56.109	663	205	12	215	824	81	710	0.0	711
Msa0865390	MtrunA17_Chr2g0289121	45.157	702	325	11	150	828	155	819	0.0	574

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0865390	AT1G11950.1	47.361	701	321	11	151	828	193	868	0.0	621
Msa0865390	AT1G11950.3	47.361	701	321	11	151	828	193	868	0.0	621
Msa0865390	AT1G62310.1	47.315	689	327	9	151	817	209	883	0.0	613
Msa0865390	AT1G11950.2	45.426	634	298	11	151	761	193	801	1.81e-173	526
Msa0865390	AT3G07610.1	54.125	497	205	4	343	832	415	895	3.44e-172	530
Msa0865390	AT3G07610.1	33.224	304	184	5	44	330	32	333	3.22e-44	174
Msa0865390	AT3G07610.3	52.132	516	208	5	343	832	415	917	6.57e-165	512
Msa0865390	AT3G07610.3	33.224	304	184	5	44	330	32	333	3.03e-44	174
Msa0865390	AT4G00990.3	44.553	514	258	11	150	647	79	581	5.32e-128	407
Msa0865390	AT4G00990.3	55.856	111	45	1	667	777	672	778	5.29e-31	131

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Find 207 sgRNAs with CRISPR-Local

Find 429 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGAGCTAGTTGGTTA+TGG	0.357001	5_4:+66009462	Msa0865390:CDS
AAAGGGAGCTAGTTGGTTAT+GGG	0.379755	5_4:+66009463	Msa0865390:CDS
AAATGGTATGATCATGAATG+GGG	0.688068	5_4:-66009899	None:intergenic
AAATGGTGGTCATAACGTAA+TGG	0.527010	5_4:+66013150	Msa0865390:CDS
AAATTGCAGTCCTTTAAAGC+AGG	0.577294	5_4:+66009647	Msa0865390:CDS
AACAGATTCTTCTGCTACTG+CGG	0.546201	5_4:-66006293	None:intergenic
AACCGGAGAGAAAGAAACGC+GGG	0.621363	5_4:+66006551	Msa0865390:CDS
AACTCGGAGATGCAATTTGG+AGG	0.562849	5_4:-66007731	None:intergenic
AACTTCATCGTATTTAGAAT+TGG	0.357620	5_4:-66008074	None:intergenic
AAGGGAGCTAGTTGGTTATG+GGG	0.655659	5_4:+66009464	Msa0865390:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTGAATAACGGTGAAAATT+CGG	+	chr5_4:66006249-66006268	Msa0865390:CDS	30.0%
GAAAAACAAGCTATGAATCT+TGG	+	chr5_4:66006325-66006344	Msa0865390:CDS	30.0%
AATAAAGGAAGAAAGAGATG+TGG	+	chr5_4:66006504-66006523	Msa0865390:CDS	30.0%
CAATGTAAAAGAAGTGATAC+AGG	+	chr5_4:66006676-66006695	Msa0865390:CDS	30.0%
AAGATTACATGTTTGGATCT+TGG	+	chr5_4:66006834-66006853	Msa0865390:intron	30.0%
ACATCACTCTCATTCAATTT+AGG	-	chr5_4:66006914-66006933	None:intergenic	30.0%
ATTTCCTATAGTAAACCAGA+TGG	-	chr5_4:66007077-66007096	None:intergenic	30.0%
ACTATAGGAAATGAAGCATA+AGG	+	chr5_4:66007085-66007104	Msa0865390:intron	30.0%
TTCTCTAAGTATATGCTGAA+AGG	+	chr5_4:66007137-66007156	Msa0865390:CDS	30.0%
TGAAGAACAAATGATTGAGA+AGG	+	chr5_4:66007187-66007206	Msa0865390:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	66006220	66013423	66006220	ID=Msa0865390;Name=Msa0865390
chr5_4	mRNA	66006220	66013423	66006220	ID=Msa0865390-mRNA-1;Parent=Msa0865390;Name=Msa0865390-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0\|0.25\|0.15\|0.69\|1\|1\|13\|0\|1000
chr5_4	exon	66006220	66006761	66006220	ID=Msa0865390-mRNA-1:exon:20871;Parent=Msa0865390-mRNA-1
chr5_4	exon	66006907	66007006	66006907	ID=Msa0865390-mRNA-1:exon:20872;Parent=Msa0865390-mRNA-1
chr5_4	exon	66007092	66007230	66007092	ID=Msa0865390-mRNA-1:exon:20873;Parent=Msa0865390-mRNA-1
chr5_4	exon	66007310	66007373	66007310	ID=Msa0865390-mRNA-1:exon:20874;Parent=Msa0865390-mRNA-1
chr5_4	exon	66007457	66008135	66007457	ID=Msa0865390-mRNA-1:exon:20875;Parent=Msa0865390-mRNA-1
chr5_4	exon	66008634	66008963	66008634	ID=Msa0865390-mRNA-1:exon:20876;Parent=Msa0865390-mRNA-1
chr5_4	exon	66009369	66009668	66009369	ID=Msa0865390-mRNA-1:exon:20877;Parent=Msa0865390-mRNA-1
chr5_4	exon	66009891	66009963	66009891	ID=Msa0865390-mRNA-1:exon:20878;Parent=Msa0865390-mRNA-1
chr5_4	exon	66010066	66010151	66010066	ID=Msa0865390-mRNA-1:exon:20879;Parent=Msa0865390-mRNA-1
chr5_4	exon	66010533	66010652	66010533	ID=Msa0865390-mRNA-1:exon:20880;Parent=Msa0865390-mRNA-1
chr5_4	exon	66011032	66011090	66011032	ID=Msa0865390-mRNA-1:exon:20881;Parent=Msa0865390-mRNA-1
chr5_4	exon	66011266	66011281	66011266	ID=Msa0865390-mRNA-1:exon:20882;Parent=Msa0865390-mRNA-1
chr5_4	exon	66012929	66013423	66012929	ID=Msa0865390-mRNA-1:exon:20883;Parent=Msa0865390-mRNA-1
chr5_4	CDS	66006220	66006761	66006220	ID=Msa0865390-mRNA-1:cds;Parent=Msa0865390-mRNA-1
chr5_4	CDS	66006907	66007006	66006907	ID=Msa0865390-mRNA-1:cds;Parent=Msa0865390-mRNA-1
chr5_4	CDS	66007092	66007230	66007092	ID=Msa0865390-mRNA-1:cds;Parent=Msa0865390-mRNA-1
chr5_4	CDS	66007310	66007373	66007310	ID=Msa0865390-mRNA-1:cds;Parent=Msa0865390-mRNA-1
chr5_4	CDS	66007457	66008135	66007457	ID=Msa0865390-mRNA-1:cds;Parent=Msa0865390-mRNA-1
chr5_4	CDS	66008634	66008963	66008634	ID=Msa0865390-mRNA-1:cds;Parent=Msa0865390-mRNA-1
chr5_4	CDS	66009369	66009668	66009369	ID=Msa0865390-mRNA-1:cds;Parent=Msa0865390-mRNA-1
chr5_4	CDS	66009891	66009963	66009891	ID=Msa0865390-mRNA-1:cds;Parent=Msa0865390-mRNA-1
chr5_4	CDS	66010066	66010151	66010066	ID=Msa0865390-mRNA-1:cds;Parent=Msa0865390-mRNA-1
chr5_4	CDS	66010533	66010652	66010533	ID=Msa0865390-mRNA-1:cds;Parent=Msa0865390-mRNA-1
chr5_4	CDS	66011032	66011090	66011032	ID=Msa0865390-mRNA-1:cds;Parent=Msa0865390-mRNA-1
chr5_4	CDS	66011266	66011281	66011266	ID=Msa0865390-mRNA-1:cds;Parent=Msa0865390-mRNA-1
chr5_4	CDS	66012929	66013423	66012929	ID=Msa0865390-mRNA-1:cds;Parent=Msa0865390-mRNA-1

Gene Sequence

>Msa0865390

ATGAATGGTGGCCCTGCTGAAACTGCGTCGTTGAATAACGGTGAAAATTCGGTTGAAGCTGGTGATGTGGCAGCCGCAGTAGCAGAAGAATCTGTTCCTGATCGAGAAAAACAAGCTATGAATCTTGGTGCCAATACGGTGGAGTCGCTGTTGACGGAAGATGAAATGGTAGCTAGGGATTCTTCCTTAGTTAAAGCTGCTATGGAGATAATGAAACGCGGAAGAAAGAGTTTTGCAGAAATTCAGAAGAGGAAGATGGATGAAGAAGCGTTGTTAGTGAGCAGAATAAAGGAAGAAAGAGATGTGGTAGCCGGAGGCTCTTCATCATTTCAACCGGAGAGAAAGAAACGCGGGAGAAAGAGAAAAGCGGAGAAGGAATCCACCCAAAATGAGGTTCCACAAGTCCACAAGAAACTTAATACCAAATTAAGTTCAGAGGAATCCTTAGCGTGCCATCAATGTAAAAGAAGTGATACAGGCAGGGTTATAAGATGCACAAAATGCAAACGAAGAAGATATTGCATACCCTGTTTGAACAAATGGTATCCTAAATTGAATGAGAGTGATGTTGCCGAAGCATGTCCTGTGTGCTGTGATAATTGCAATTGTAAAGCATGCTTGCGATCTTTTAAACTCATCAATGAAATGAAGCATAAGGTCGAAACCAACAATGATGAGGAAGTCGAGTTCTCTAAGTATATGCTGAAAGGACTTCTTCCACATTTAAGACGGTTGGATGAAGAACAAATGATTGAGAAGGAAAGAGAAGCCAAGAGACAAGGCCTCTCACTCTCAAAGCTAAAAATAAAACCGGGGGATCATTCTAAAGATGAGCGTGTGATCTGTGACAACTGCAAAACATCAATATTTGACTACCACAGAAGCTGTACAAAATGCCGCTTTGACCTTTGTCTCCTCTGTTGTTGCGAGCTCCGTGGTGGGAAGCTTCTAGGTGGCGCAGATCCAATTAAGATCGAGTATGTATCACAGACTGAGGACGAGTCTACGAATCGTGAGTGGTCAAGATCTGGGTGGCATGCAAATGGCGATGGTAGCATTCCCTGTCCAAAAGCCGATAATGAATGTCATCATGGTTTCCTTGAAATGAGAAGGATACTTCCTCCAAATTGCATCTCCGAGTTAGTATGTAAAGCAAACGAACTTGCAGAAACAATTAAGCTTCAAGATGTAGAGGAGACTTGTGATAATAGGTGTTCTTGCTTGAAACCTGTTAGTAACGCCGATGTTATACACAATAACACAACGAAGGCAGCTTTTCTTGAAAATTCAAGTGACAGATTTCTATACTGTCCTAGGGCTGTAGATCTACACCATGGAGATTTAAGACATTTTCAATGGCACTGGAGCAAAGGGGAGCCTGTAATTGTCAGCAATGTACTTGAATGTACATCTGGTTTAAGCTGGGAACCAAAAGTCATGTGGCGTGCATTCCGTCAAAAAACCAATTCTAAATACGATGAAGTTTTGGATGTGAAGGCTGTTAATTGCATAGATTGGTGTGAGAGAGATATTAATATCCACCAATTCTTCACTGGTTACACAAGGGGTCGCAAGGATTGGCGCAATTGGCCTGAGGTGTTGAAATTGAAAGATTGGCCTCCTTCTGATTTATTTCAGGAACGTTTACCTCGTCATCATGCTGAGTTCATAACTTCCTTGCCTTATAAAGAATATACAAATCCTTTTAGTGGTTCTCTCAACCTTGCTGTGAAGTTGCCGGATTATTGTTTAAAGCCTGACATGGGGCCAAAAACATATATTGCTTATGGATTTGCTCATGATCTTGGACGTGGGGATTCAGTGACTAAGCTCCATTGTAATGTGTTTGATGATGTAAATGTGTTGGCGCATATCGCTAAAGTGGAACTGAAACCTGAGGAAATTACTGTCATTAAGAAATTGAGACATAAGCACCTTGAGCAAGATAAAAGGGAGCTAGTTGGTTATGGGGAGGCGGTTGATATGTTTCATCAACAATCTGACACTAATGATAGTGACTTGGTGGTTGGAGGGGACCCCTTAGAAGGTGCTATCTGGGATATTTTCCGGAGAGAGGATGTAACCAAATTGAAGGAATATATAAAGAAGCATTTTAGAGAGTTCAGACATGTAAATTGCAGTCCTTTAAAGCAGGTTATTGACCCCATTCATGATCATACCATTTATCTGACTATGGAGCATAAGATGAAACTTAAGGAGGAGTATGGAATTGAACCTTGGACTTTTATTCAGAAGCTTGGAGATGCTGTTTTCATTCCCGCTGGCTTGCCTCACCAAGTCAGAAATCTGAAGTCATGCATCAAGGTTGCACTTGATTTTGTCTCTCCTGAAAATATTGGTGAGTGCTTGCGTTTGACAGAGGAATTCCGCCGGCTTCCGATAAATCACAGATCCGCCAAGGACAAGTTTGAGGTGAAGAAAATTGTCATACATGCTATGCTTGATGTAATTGAAAAATTAGAGAAAGAAAGGTCTGAGAAAACCAAGTCCTTTAAGCCATTCCTTGTGCAATTCTCTAGCAGCTACTACACCATTGACAAGAGTTACATGTTCCTTCTTTGCAATATCATTCTTGCTTTTATAGCATTATATTCAAGTTTAATCAATCCCTCTTCATCAACCACTCATGAAAACATTGAACATGTCCTCGACAGTGAGAAGAGTGACCGGTTCGAATTTTACATATCAGAATCAGAGATCACAGAACCAAATGGTGGTCATAACGTAATGGAAAGTGAATCCCAAGAAAAAGAAAAAGTGGAAGAAAAGAGTTTGATGATAGTGGAACCAGAAAATGTGGTTATTGAAGCAGAAAAAGTTGAAGAAGAAGAAGAAGAAGTAGAAGAAGAAGAAGAAGGAAATGCTCTTATGGTAAATGATGAAGATGAAATAGAAGAATTAAACAAGAAATGTGAGGATTTTATCAAAAAGATGAAAGCTACTTTCTATTATGATTCAAGAGCTGAGAATGTGTTATTTTGA

Protein sequence

>Msa0865390

MNGGPAETASLNNGENSVEAGDVAAAVAEESVPDREKQAMNLGANTVESLLTEDEMVARDSSLVKAAMEIMKRGRKSFAEIQKRKMDEEALLVSRIKEERDVVAGGSSSFQPERKKRGRKRKAEKESTQNEVPQVHKKLNTKLSSEESLACHQCKRSDTGRVIRCTKCKRRRYCIPCLNKWYPKLNESDVAEACPVCCDNCNCKACLRSFKLINEMKHKVETNNDEEVEFSKYMLKGLLPHLRRLDEEQMIEKEREAKRQGLSLSKLKIKPGDHSKDERVICDNCKTSIFDYHRSCTKCRFDLCLLCCCELRGGKLLGGADPIKIEYVSQTEDESTNREWSRSGWHANGDGSIPCPKADNECHHGFLEMRRILPPNCISELVCKANELAETIKLQDVEETCDNRCSCLKPVSNADVIHNNTTKAAFLENSSDRFLYCPRAVDLHHGDLRHFQWHWSKGEPVIVSNVLECTSGLSWEPKVMWRAFRQKTNSKYDEVLDVKAVNCIDWCERDINIHQFFTGYTRGRKDWRNWPEVLKLKDWPPSDLFQERLPRHHAEFITSLPYKEYTNPFSGSLNLAVKLPDYCLKPDMGPKTYIAYGFAHDLGRGDSVTKLHCNVFDDVNVLAHIAKVELKPEEITVIKKLRHKHLEQDKRELVGYGEAVDMFHQQSDTNDSDLVVGGDPLEGAIWDIFRREDVTKLKEYIKKHFREFRHVNCSPLKQVIDPIHDHTIYLTMEHKMKLKEEYGIEPWTFIQKLGDAVFIPAGLPHQVRNLKSCIKVALDFVSPENIGECLRLTEEFRRLPINHRSAKDKFEVKKIVIHAMLDVIEKLEKERSEKTKSFKPFLVQFSSSYYTIDKSYMFLLCNIILAFIALYSSLINPSSSTTHENIEHVLDSEKSDRFEFYISESEITEPNGGHNVMESESQEKEKVEEKSLMIVEPENVVIEAEKVEEEEEEVEEEEEGNALMVNDEDEIEELNKKCEDFIKKMKATFYYDSRAENVLF*