Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006690 | XP_003597628.2 | 98.188 | 276 | 5 | 0 | 1 | 276 | 1 | 276 | 0.0 | 558 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006690 | sp|Q9FZ62|PPSP2_ARATH | 60.851 | 235 | 91 | 1 | 4 | 237 | 7 | 241 | 1.42e-106 | 313 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006690 | B7FI56 | 98.188 | 276 | 5 | 0 | 1 | 276 | 1 | 276 | 0.0 | 558 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1006690 | Msa1048600 | 0.843150 | 1.672258e-58 | -8.615850e-47 |
| Msa1006690 | Msa1048620 | 0.828852 | 7.141648e-55 | -8.615850e-47 |
| Msa1006690 | Msa1135950 | 0.915127 | 8.510234e-85 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006690 | MtrunA17_Chr2g0330491 | 98.188 | 276 | 5 | 0 | 1 | 276 | 1 | 276 | 0.0 | 558 |
| Msa1006690 | MtrunA17_Chr8g0341701 | 57.565 | 271 | 111 | 1 | 4 | 274 | 5 | 271 | 2.29e-116 | 335 |
| Msa1006690 | MtrunA17_Chr2g0330511 | 56.934 | 274 | 113 | 2 | 1 | 274 | 1 | 269 | 1.44e-113 | 328 |
| Msa1006690 | MtrunA17_Chr8g0341731 | 56.250 | 272 | 114 | 2 | 4 | 274 | 5 | 272 | 1.91e-113 | 327 |
| Msa1006690 | MtrunA17_Chr8g0341741 | 55.882 | 272 | 115 | 2 | 4 | 274 | 5 | 272 | 1.51e-112 | 325 |
| Msa1006690 | MtrunA17_Chr8g0341721 | 57.143 | 259 | 107 | 1 | 4 | 262 | 5 | 259 | 9.56e-112 | 323 |
| Msa1006690 | MtrunA17_Chr2g0309111 | 56.934 | 274 | 114 | 1 | 1 | 274 | 45 | 314 | 3.17e-111 | 323 |
| Msa1006690 | MtrunA17_Chr8g0389271 | 49.580 | 238 | 117 | 3 | 4 | 239 | 2 | 238 | 2.36e-85 | 255 |
| Msa1006690 | MtrunA17_Chr2g0330501 | 75.325 | 77 | 19 | 0 | 199 | 275 | 1 | 77 | 1.29e-34 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1006690 | AT1G17710.1 | 60.851 | 235 | 91 | 1 | 4 | 237 | 7 | 241 | 1.45e-107 | 313 |
| Msa1006690 | AT1G73010.1 | 55.036 | 278 | 118 | 3 | 4 | 274 | 14 | 291 | 3.81e-105 | 308 |
| Msa1006690 | AT4G29530.1 | 50.211 | 237 | 117 | 1 | 1 | 236 | 1 | 237 | 7.14e-84 | 252 |
| Msa1006690 | AT1G17710.2 | 59.896 | 192 | 76 | 1 | 47 | 237 | 18 | 209 | 6.59e-83 | 249 |
| Msa1006690 | AT4G29530.2 | 48.168 | 191 | 98 | 1 | 47 | 236 | 36 | 226 | 1.67e-61 | 194 |
Find 47 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAATGTGATAGTGATAAT+TGG | 0.238396 | 7_1:+5463116 | Msa1006690:CDS |
| GCAATTGCCTTGCACATATT+TGG | 0.255407 | 7_1:-5463738 | None:intergenic |
| TTAGGAACTGATAGAGCTTC+AGG | 0.281232 | 7_1:-5464569 | None:intergenic |
| CCTTCTTCACTAACATAACT+TGG | 0.318088 | 7_1:-5463651 | None:intergenic |
| AAATTGTAGAAGTTCTTAAT+AGG | 0.333392 | 7_1:+5463367 | Msa1006690:CDS |
| CTCAATGCAAAGTTCATTCT+AGG | 0.337021 | 7_1:-5464353 | None:intergenic |
| AGCTTCTTCCTAGCATGCTT+TGG | 0.339956 | 7_1:+5463176 | Msa1006690:CDS |
| AATTGGGTTCTTGATGAGTT+TGG | 0.346908 | 7_1:+5463133 | Msa1006690:CDS |
| ATCATCAACAAAGCTAATAT+TGG | 0.348472 | 7_1:+5464464 | Msa1006690:CDS |
| ATTGAGGCTGCTTATTCTCT+AGG | 0.365751 | 7_1:+5463420 | Msa1006690:CDS |
| ACAAAGCTAATATTGGTAAA+GGG | 0.373101 | 7_1:+5464471 | Msa1006690:CDS |
| CAAAATTCACTTGATGATGA+AGG | 0.378739 | 7_1:+5464248 | Msa1006690:CDS |
| GCGATAATGCGAGGATGAAT+TGG | 0.382658 | 7_1:-5463393 | None:intergenic |
| CCAAGTTATGTTAGTGAAGA+AGG | 0.398221 | 7_1:+5463651 | Msa1006690:CDS |
| AACAAAGCTAATATTGGTAA+AGG | 0.419483 | 7_1:+5464470 | Msa1006690:CDS |
| ATCTCAGTTGATTGCAAGAT+GGG | 0.430587 | 7_1:+5464515 | Msa1006690:CDS |
| AAGAAGAAAATCATCTACTT+AGG | 0.467585 | 7_1:+5464272 | Msa1006690:CDS |
| CATGTACATGGTTGGAGAGA+TGG | 0.479326 | 7_1:+5464413 | Msa1006690:CDS |
| TGAATGTGATAGTGATAATT+GGG | 0.488124 | 7_1:+5463117 | Msa1006690:CDS |
| ATTGGTAAAGGGGACATTGT+TGG | 0.495758 | 7_1:+5464482 | Msa1006690:CDS |
| TAGGAACTGATAGAGCTTCA+GGG | 0.502197 | 7_1:-5464568 | None:intergenic |
| TAGAGAATAAGCAGCCTCAA+TGG | 0.509736 | 7_1:-5463418 | None:intergenic |
| TTGAGGCTGCTTATTCTCTA+GGG | 0.512196 | 7_1:+5463421 | Msa1006690:CDS |
| AAAATCATCTACTTAGGAGA+TGG | 0.512607 | 7_1:+5464278 | Msa1006690:CDS |
| CTTCTTCACTAACATAACTT+GGG | 0.522722 | 7_1:-5463650 | None:intergenic |
| AGAGGATTCCAAAGCATGCT+AGG | 0.522882 | 7_1:-5463184 | None:intergenic |
| CATCTCAGTTGATTGCAAGA+TGG | 0.524133 | 7_1:+5464514 | Msa1006690:CDS |
| CTCTCTTTGAGCTTTAGACT+AGG | 0.537244 | 7_1:-5464317 | None:intergenic |
| GATTATCTAAAATCTTCTCA+TGG | 0.538879 | 7_1:+5463699 | Msa1006690:CDS |
| GACATAAAGGCACATGTACA+TGG | 0.547678 | 7_1:+5464401 | Msa1006690:CDS |
| CATGCTTTGGAATCCTCTCA+TGG | 0.547902 | 7_1:+5463189 | Msa1006690:CDS |
| CAAGTTATGTTAGTGAAGAA+GGG | 0.557919 | 7_1:+5463652 | Msa1006690:CDS |
| TGCACATATTTGGTGGACAA+AGG | 0.560853 | 7_1:-5463728 | None:intergenic |
| TAAAGGCACATGTACATGGT+TGG | 0.564702 | 7_1:+5464405 | Msa1006690:CDS |
| CAAAGCTAATATTGGTAAAG+GGG | 0.565694 | 7_1:+5464472 | Msa1006690:CDS |
| TGACATACAGGGAAAGGTGA+TGG | 0.566260 | 7_1:+5464217 | Msa1006690:intron |
| ATCTACTTAGGAGATGGAAG+TGG | 0.574030 | 7_1:+5464284 | Msa1006690:CDS |
| ATTGCCTTGCACATATTTGG+TGG | 0.577663 | 7_1:-5463735 | None:intergenic |
| AAAGTAAAGAAGACCATGAG+AGG | 0.618460 | 7_1:-5463202 | None:intergenic |
| TCGCATTATCGCTGCCATTG+AGG | 0.621829 | 7_1:+5463404 | Msa1006690:CDS |
| TTGTCCACCAAATATGTGCA+AGG | 0.634563 | 7_1:+5463731 | Msa1006690:CDS |
| ATGAATGAACTTCATGCACA+AGG | 0.639690 | 7_1:+5463330 | Msa1006690:CDS |
| TTGTGTTCAGGTGTGAGCTG+AGG | 0.644223 | 7_1:+5463541 | Msa1006690:intron |
| ACATGGTTGGAGAGATGGAG+AGG | 0.648554 | 7_1:+5464418 | Msa1006690:CDS |
| TCTCAGTTGATTGCAAGATG+GGG | 0.664938 | 7_1:+5464516 | Msa1006690:CDS |
| GTTATGTTAGTGAAGAAGGG+AGG | 0.681207 | 7_1:+5463655 | Msa1006690:CDS |
| TCAATGGCAGCGATAATGCG+AGG | 0.687862 | 7_1:-5463402 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAATTATTTCTTTAACT+AGG | - | chr7_1:5463282-5463301 | None:intergenic | 10.0% |
| !! | ATGAATATAATAGTATTATA+TGG | - | chr7_1:5463787-5463806 | None:intergenic | 10.0% |
| !!! | ATAAAATTATTTCTTTAACT+AGG | - | chr7_1:5463282-5463301 | None:intergenic | 10.0% |
| !! | ATGAATATAATAGTATTATA+TGG | - | chr7_1:5463787-5463806 | None:intergenic | 10.0% |
| !!! | TATTAGAAGCATTAAAATAA+AGG | - | chr7_1:5463228-5463247 | None:intergenic | 15.0% |
| !!! | TATTTGTCCTTAAATTTTAT+AGG | + | chr7_1:5463299-5463318 | Msa1006690:intron | 15.0% |
| !!! | ATTTTGTCCTATAAAATTTA+AGG | - | chr7_1:5463309-5463328 | None:intergenic | 15.0% |
| !! | GCAAAAATATTAAAGAAAAA+TGG | - | chr7_1:5463940-5463959 | None:intergenic | 15.0% |
| !! | TAAAAATTCAAATGACATAA+AGG | + | chr7_1:5464388-5464407 | Msa1006690:CDS | 15.0% |
| !!! | TATTAGAAGCATTAAAATAA+AGG | - | chr7_1:5463228-5463247 | None:intergenic | 15.0% |
| !!! | TATTTGTCCTTAAATTTTAT+AGG | + | chr7_1:5463299-5463318 | Msa1006690:intron | 15.0% |
| !!! | ATTTTGTCCTATAAAATTTA+AGG | - | chr7_1:5463309-5463328 | None:intergenic | 15.0% |
| !! | GCAAAAATATTAAAGAAAAA+TGG | - | chr7_1:5463940-5463959 | None:intergenic | 15.0% |
| !! | TAAAAATTCAAATGACATAA+AGG | + | chr7_1:5464388-5464407 | Msa1006690:CDS | 15.0% |
| !!! | AGCTTTTTGTACATTTATAA+TGG | + | chr7_1:5463054-5463073 | Msa1006690:exon | 20.0% |
| !! | AAATTGTAGAAGTTCTTAAT+AGG | + | chr7_1:5463367-5463386 | Msa1006690:CDS | 20.0% |
| !! | TCATCAACAATATATAGAAA+CGG | - | chr7_1:5463880-5463899 | None:intergenic | 20.0% |
| !!! | TAAGATGTGATTTTATGTAT+AGG | - | chr7_1:5464137-5464156 | None:intergenic | 20.0% |
| !!! | AGCTTTTTGTACATTTATAA+TGG | + | chr7_1:5463054-5463073 | Msa1006690:exon | 20.0% |
| !! | AAATTGTAGAAGTTCTTAAT+AGG | + | chr7_1:5463367-5463386 | Msa1006690:CDS | 20.0% |
| !! | TCATCAACAATATATAGAAA+CGG | - | chr7_1:5463880-5463899 | None:intergenic | 20.0% |
| !!! | TAAGATGTGATTTTATGTAT+AGG | - | chr7_1:5464137-5464156 | None:intergenic | 20.0% |
| !! | TTTTGTACATTTATAATGGC+TGG | + | chr7_1:5463058-5463077 | Msa1006690:exon | 25.0% |
| !! | TTGAATGTGATAGTGATAAT+TGG | + | chr7_1:5463116-5463135 | Msa1006690:CDS | 25.0% |
| !! | TGAATGTGATAGTGATAATT+GGG | + | chr7_1:5463117-5463136 | Msa1006690:CDS | 25.0% |
| ! | AAGATGAAATATTTGTGTTC+AGG | + | chr7_1:5463529-5463548 | Msa1006690:intron | 25.0% |
| !!! | AAACAATTTTGAAGCATCAT+GGG | + | chr7_1:5463595-5463614 | Msa1006690:CDS | 25.0% |
| !! | GATTTTAGATAATCATGGTA+GGG | - | chr7_1:5463693-5463712 | None:intergenic | 25.0% |
| !! | AGATTTTAGATAATCATGGT+AGG | - | chr7_1:5463694-5463713 | None:intergenic | 25.0% |
| !! | GAGAAGATTTTAGATAATCA+TGG | - | chr7_1:5463698-5463717 | None:intergenic | 25.0% |
| !! | GATTATCTAAAATCTTCTCA+TGG | + | chr7_1:5463699-5463718 | Msa1006690:CDS | 25.0% |
| ! | ATGGTCATAAATAGATTTAG+AGG | - | chr7_1:5463768-5463787 | None:intergenic | 25.0% |
| ! | TAGAAACGGTGAATAAAATA+TGG | - | chr7_1:5463866-5463885 | None:intergenic | 25.0% |
| ! | GTCATATATGTCATAATCAA+AGG | + | chr7_1:5464006-5464025 | Msa1006690:intron | 25.0% |
| ! | AAGAAGAAAATCATCTACTT+AGG | + | chr7_1:5464272-5464291 | Msa1006690:CDS | 25.0% |
| ! | ATCATCAACAAAGCTAATAT+TGG | + | chr7_1:5464464-5464483 | Msa1006690:CDS | 25.0% |
| ! | AACAAAGCTAATATTGGTAA+AGG | + | chr7_1:5464470-5464489 | Msa1006690:CDS | 25.0% |
| ! | ACAAAGCTAATATTGGTAAA+GGG | + | chr7_1:5464471-5464490 | Msa1006690:CDS | 25.0% |
| !! | TTTTGTACATTTATAATGGC+TGG | + | chr7_1:5463058-5463077 | Msa1006690:exon | 25.0% |
| !! | TTGAATGTGATAGTGATAAT+TGG | + | chr7_1:5463116-5463135 | Msa1006690:CDS | 25.0% |
| !! | TGAATGTGATAGTGATAATT+GGG | + | chr7_1:5463117-5463136 | Msa1006690:CDS | 25.0% |
| ! | AAGATGAAATATTTGTGTTC+AGG | + | chr7_1:5463529-5463548 | Msa1006690:intron | 25.0% |
| !!! | AAACAATTTTGAAGCATCAT+GGG | + | chr7_1:5463595-5463614 | Msa1006690:CDS | 25.0% |
| !! | GATTTTAGATAATCATGGTA+GGG | - | chr7_1:5463693-5463712 | None:intergenic | 25.0% |
| !! | AGATTTTAGATAATCATGGT+AGG | - | chr7_1:5463694-5463713 | None:intergenic | 25.0% |
| !! | GAGAAGATTTTAGATAATCA+TGG | - | chr7_1:5463698-5463717 | None:intergenic | 25.0% |
| !! | GATTATCTAAAATCTTCTCA+TGG | + | chr7_1:5463699-5463718 | Msa1006690:CDS | 25.0% |
| ! | ATGGTCATAAATAGATTTAG+AGG | - | chr7_1:5463768-5463787 | None:intergenic | 25.0% |
| ! | TAGAAACGGTGAATAAAATA+TGG | - | chr7_1:5463866-5463885 | None:intergenic | 25.0% |
| ! | GTCATATATGTCATAATCAA+AGG | + | chr7_1:5464006-5464025 | Msa1006690:intron | 25.0% |
| ! | AAGAAGAAAATCATCTACTT+AGG | + | chr7_1:5464272-5464291 | Msa1006690:CDS | 25.0% |
| ! | ATCATCAACAAAGCTAATAT+TGG | + | chr7_1:5464464-5464483 | Msa1006690:CDS | 25.0% |
| ! | AACAAAGCTAATATTGGTAA+AGG | + | chr7_1:5464470-5464489 | Msa1006690:CDS | 25.0% |
| ! | ACAAAGCTAATATTGGTAAA+GGG | + | chr7_1:5464471-5464490 | Msa1006690:CDS | 25.0% |
| !!! | GAAACAATTTTGAAGCATCA+TGG | + | chr7_1:5463594-5463613 | Msa1006690:CDS | 30.0% |
| !!! | AACAATTTTGAAGCATCATG+GGG | + | chr7_1:5463596-5463615 | Msa1006690:CDS | 30.0% |
| CTTCTTCACTAACATAACTT+GGG | - | chr7_1:5463653-5463672 | None:intergenic | 30.0% | |
| CAAGTTATGTTAGTGAAGAA+GGG | + | chr7_1:5463652-5463671 | Msa1006690:CDS | 30.0% | |
| !! | CAAAATTCACTTGATGATGA+AGG | + | chr7_1:5464248-5464267 | Msa1006690:CDS | 30.0% |
| AAAATCATCTACTTAGGAGA+TGG | + | chr7_1:5464278-5464297 | Msa1006690:CDS | 30.0% | |
| CAAAGCTAATATTGGTAAAG+GGG | + | chr7_1:5464472-5464491 | Msa1006690:CDS | 30.0% | |
| ! | CAATCAACTGAGATGATTTT+TGG | - | chr7_1:5464509-5464528 | None:intergenic | 30.0% |
| !!! | GAAACAATTTTGAAGCATCA+TGG | + | chr7_1:5463594-5463613 | Msa1006690:CDS | 30.0% |
| !!! | AACAATTTTGAAGCATCATG+GGG | + | chr7_1:5463596-5463615 | Msa1006690:CDS | 30.0% |
| CTTCTTCACTAACATAACTT+GGG | - | chr7_1:5463653-5463672 | None:intergenic | 30.0% | |
| CAAGTTATGTTAGTGAAGAA+GGG | + | chr7_1:5463652-5463671 | Msa1006690:CDS | 30.0% | |
| !! | CAAAATTCACTTGATGATGA+AGG | + | chr7_1:5464248-5464267 | Msa1006690:CDS | 30.0% |
| AAAATCATCTACTTAGGAGA+TGG | + | chr7_1:5464278-5464297 | Msa1006690:CDS | 30.0% | |
| CAAAGCTAATATTGGTAAAG+GGG | + | chr7_1:5464472-5464491 | Msa1006690:CDS | 30.0% | |
| ! | CAATCAACTGAGATGATTTT+TGG | - | chr7_1:5464509-5464528 | None:intergenic | 30.0% |
| AATTGGGTTCTTGATGAGTT+TGG | + | chr7_1:5463133-5463152 | Msa1006690:CDS | 35.0% | |
| AAAGTAAAGAAGACCATGAG+AGG | - | chr7_1:5463205-5463224 | None:intergenic | 35.0% | |
| ATGAATGAACTTCATGCACA+AGG | + | chr7_1:5463330-5463349 | Msa1006690:CDS | 35.0% | |
| TCATGCACAAGGAAAAACAA+TGG | + | chr7_1:5463341-5463360 | Msa1006690:CDS | 35.0% | |
| CCTTCTTCACTAACATAACT+TGG | - | chr7_1:5463654-5463673 | None:intergenic | 35.0% | |
| CCAAGTTATGTTAGTGAAGA+AGG | + | chr7_1:5463651-5463670 | Msa1006690:CDS | 35.0% | |
| !! | TTGTTGATGACTAATGAACG+TGG | + | chr7_1:5463890-5463909 | Msa1006690:intron | 35.0% |
| ! | ACGATTTTGCCTTTTTGTGT+AGG | - | chr7_1:5464039-5464058 | None:intergenic | 35.0% |
| CTCAATGCAAAGTTCATTCT+AGG | - | chr7_1:5464356-5464375 | None:intergenic | 35.0% | |
| ATCTCAGTTGATTGCAAGAT+GGG | + | chr7_1:5464515-5464534 | Msa1006690:CDS | 35.0% | |
| AATTGGGTTCTTGATGAGTT+TGG | + | chr7_1:5463133-5463152 | Msa1006690:CDS | 35.0% | |
| AAAGTAAAGAAGACCATGAG+AGG | - | chr7_1:5463205-5463224 | None:intergenic | 35.0% | |
| ATGAATGAACTTCATGCACA+AGG | + | chr7_1:5463330-5463349 | Msa1006690:CDS | 35.0% | |
| TCATGCACAAGGAAAAACAA+TGG | + | chr7_1:5463341-5463360 | Msa1006690:CDS | 35.0% | |
| CCTTCTTCACTAACATAACT+TGG | - | chr7_1:5463654-5463673 | None:intergenic | 35.0% | |
| CCAAGTTATGTTAGTGAAGA+AGG | + | chr7_1:5463651-5463670 | Msa1006690:CDS | 35.0% | |
| !! | TTGTTGATGACTAATGAACG+TGG | + | chr7_1:5463890-5463909 | Msa1006690:intron | 35.0% |
| ! | ACGATTTTGCCTTTTTGTGT+AGG | - | chr7_1:5464039-5464058 | None:intergenic | 35.0% |
| CTCAATGCAAAGTTCATTCT+AGG | - | chr7_1:5464356-5464375 | None:intergenic | 35.0% | |
| ATCTCAGTTGATTGCAAGAT+GGG | + | chr7_1:5464515-5464534 | Msa1006690:CDS | 35.0% | |
| TAGAGAATAAGCAGCCTCAA+TGG | - | chr7_1:5463421-5463440 | None:intergenic | 40.0% | |
| ATTGAGGCTGCTTATTCTCT+AGG | + | chr7_1:5463420-5463439 | Msa1006690:CDS | 40.0% | |
| TTGAGGCTGCTTATTCTCTA+GGG | + | chr7_1:5463421-5463440 | Msa1006690:CDS | 40.0% | |
| GTTATGTTAGTGAAGAAGGG+AGG | + | chr7_1:5463655-5463674 | Msa1006690:CDS | 40.0% | |
| ! | TGCACATATTTGGTGGACAA+AGG | - | chr7_1:5463731-5463750 | None:intergenic | 40.0% |
| TTGTCCACCAAATATGTGCA+AGG | + | chr7_1:5463731-5463750 | Msa1006690:CDS | 40.0% | |
| ATTGCCTTGCACATATTTGG+TGG | - | chr7_1:5463738-5463757 | None:intergenic | 40.0% | |
| GCAATTGCCTTGCACATATT+TGG | - | chr7_1:5463741-5463760 | None:intergenic | 40.0% | |
| GGAATTCTGCCTACACAAAA+AGG | + | chr7_1:5464027-5464046 | Msa1006690:intron | 40.0% | |
| TTTCCCTGTATGTCATTCGA+GGG | - | chr7_1:5464212-5464231 | None:intergenic | 40.0% | |
| ATCTACTTAGGAGATGGAAG+TGG | + | chr7_1:5464284-5464303 | Msa1006690:CDS | 40.0% | |
| !! | CTCTCTTTGAGCTTTAGACT+AGG | - | chr7_1:5464320-5464339 | None:intergenic | 40.0% |
| ! | GACATAAAGGCACATGTACA+TGG | + | chr7_1:5464401-5464420 | Msa1006690:CDS | 40.0% |
| ! | TAAAGGCACATGTACATGGT+TGG | + | chr7_1:5464405-5464424 | Msa1006690:CDS | 40.0% |
| ATTGGTAAAGGGGACATTGT+TGG | + | chr7_1:5464482-5464501 | Msa1006690:CDS | 40.0% | |
| CATCTCAGTTGATTGCAAGA+TGG | + | chr7_1:5464514-5464533 | Msa1006690:CDS | 40.0% | |
| TCTCAGTTGATTGCAAGATG+GGG | + | chr7_1:5464516-5464535 | Msa1006690:CDS | 40.0% | |
| TAGGAACTGATAGAGCTTCA+GGG | - | chr7_1:5464571-5464590 | None:intergenic | 40.0% | |
| TTAGGAACTGATAGAGCTTC+AGG | - | chr7_1:5464572-5464591 | None:intergenic | 40.0% | |
| TAGAGAATAAGCAGCCTCAA+TGG | - | chr7_1:5463421-5463440 | None:intergenic | 40.0% | |
| ATTGAGGCTGCTTATTCTCT+AGG | + | chr7_1:5463420-5463439 | Msa1006690:CDS | 40.0% | |
| TTGAGGCTGCTTATTCTCTA+GGG | + | chr7_1:5463421-5463440 | Msa1006690:CDS | 40.0% | |
| GTTATGTTAGTGAAGAAGGG+AGG | + | chr7_1:5463655-5463674 | Msa1006690:CDS | 40.0% | |
| ! | TGCACATATTTGGTGGACAA+AGG | - | chr7_1:5463731-5463750 | None:intergenic | 40.0% |
| TTGTCCACCAAATATGTGCA+AGG | + | chr7_1:5463731-5463750 | Msa1006690:CDS | 40.0% | |
| ATTGCCTTGCACATATTTGG+TGG | - | chr7_1:5463738-5463757 | None:intergenic | 40.0% | |
| GCAATTGCCTTGCACATATT+TGG | - | chr7_1:5463741-5463760 | None:intergenic | 40.0% | |
| GGAATTCTGCCTACACAAAA+AGG | + | chr7_1:5464027-5464046 | Msa1006690:intron | 40.0% | |
| TTTCCCTGTATGTCATTCGA+GGG | - | chr7_1:5464212-5464231 | None:intergenic | 40.0% | |
| ATCTACTTAGGAGATGGAAG+TGG | + | chr7_1:5464284-5464303 | Msa1006690:CDS | 40.0% | |
| !! | CTCTCTTTGAGCTTTAGACT+AGG | - | chr7_1:5464320-5464339 | None:intergenic | 40.0% |
| ! | GACATAAAGGCACATGTACA+TGG | + | chr7_1:5464401-5464420 | Msa1006690:CDS | 40.0% |
| ! | TAAAGGCACATGTACATGGT+TGG | + | chr7_1:5464405-5464424 | Msa1006690:CDS | 40.0% |
| ATTGGTAAAGGGGACATTGT+TGG | + | chr7_1:5464482-5464501 | Msa1006690:CDS | 40.0% | |
| CATCTCAGTTGATTGCAAGA+TGG | + | chr7_1:5464514-5464533 | Msa1006690:CDS | 40.0% | |
| TCTCAGTTGATTGCAAGATG+GGG | + | chr7_1:5464516-5464535 | Msa1006690:CDS | 40.0% | |
| TAGGAACTGATAGAGCTTCA+GGG | - | chr7_1:5464571-5464590 | None:intergenic | 40.0% | |
| TTAGGAACTGATAGAGCTTC+AGG | - | chr7_1:5464572-5464591 | None:intergenic | 40.0% | |
| AGCTTCTTCCTAGCATGCTT+TGG | + | chr7_1:5463176-5463195 | Msa1006690:CDS | 45.0% | |
| AGAGGATTCCAAAGCATGCT+AGG | - | chr7_1:5463187-5463206 | None:intergenic | 45.0% | |
| !! | CATGCTTTGGAATCCTCTCA+TGG | + | chr7_1:5463189-5463208 | Msa1006690:CDS | 45.0% |
| GCGATAATGCGAGGATGAAT+TGG | - | chr7_1:5463396-5463415 | None:intergenic | 45.0% | |
| TAATGAACGTGGCATGCCTT+TGG | + | chr7_1:5463901-5463920 | Msa1006690:intron | 45.0% | |
| ! | CATGCCTTTGGAGGAAAATC+TGG | + | chr7_1:5463913-5463932 | Msa1006690:intron | 45.0% |
| ! | TGGACCAGATTTTCCTCCAA+AGG | - | chr7_1:5463920-5463939 | None:intergenic | 45.0% |
| TTCCCTGTATGTCATTCGAG+GGG | - | chr7_1:5464211-5464230 | None:intergenic | 45.0% | |
| CTTTCCCTGTATGTCATTCG+AGG | - | chr7_1:5464213-5464232 | None:intergenic | 45.0% | |
| CTCGAATGACATACAGGGAA+AGG | + | chr7_1:5464211-5464230 | Msa1006690:intron | 45.0% | |
| TGACATACAGGGAAAGGTGA+TGG | + | chr7_1:5464217-5464236 | Msa1006690:intron | 45.0% | |
| CATGTACATGGTTGGAGAGA+TGG | + | chr7_1:5464413-5464432 | Msa1006690:CDS | 45.0% | |
| AGCTTCTTCCTAGCATGCTT+TGG | + | chr7_1:5463176-5463195 | Msa1006690:CDS | 45.0% | |
| AGAGGATTCCAAAGCATGCT+AGG | - | chr7_1:5463187-5463206 | None:intergenic | 45.0% | |
| !! | CATGCTTTGGAATCCTCTCA+TGG | + | chr7_1:5463189-5463208 | Msa1006690:CDS | 45.0% |
| GCGATAATGCGAGGATGAAT+TGG | - | chr7_1:5463396-5463415 | None:intergenic | 45.0% | |
| TAATGAACGTGGCATGCCTT+TGG | + | chr7_1:5463901-5463920 | Msa1006690:intron | 45.0% | |
| ! | CATGCCTTTGGAGGAAAATC+TGG | + | chr7_1:5463913-5463932 | Msa1006690:intron | 45.0% |
| ! | TGGACCAGATTTTCCTCCAA+AGG | - | chr7_1:5463920-5463939 | None:intergenic | 45.0% |
| TTCCCTGTATGTCATTCGAG+GGG | - | chr7_1:5464211-5464230 | None:intergenic | 45.0% | |
| CTTTCCCTGTATGTCATTCG+AGG | - | chr7_1:5464213-5464232 | None:intergenic | 45.0% | |
| CTCGAATGACATACAGGGAA+AGG | + | chr7_1:5464211-5464230 | Msa1006690:intron | 45.0% | |
| TGACATACAGGGAAAGGTGA+TGG | + | chr7_1:5464217-5464236 | Msa1006690:intron | 45.0% | |
| CATGTACATGGTTGGAGAGA+TGG | + | chr7_1:5464413-5464432 | Msa1006690:CDS | 45.0% | |
| TCAATGGCAGCGATAATGCG+AGG | - | chr7_1:5463405-5463424 | None:intergenic | 50.0% | |
| TCGCATTATCGCTGCCATTG+AGG | + | chr7_1:5463404-5463423 | Msa1006690:CDS | 50.0% | |
| TTGTGTTCAGGTGTGAGCTG+AGG | + | chr7_1:5463541-5463560 | Msa1006690:intron | 50.0% | |
| TCCCCCTCGAATGACATACA+GGG | + | chr7_1:5464206-5464225 | Msa1006690:intron | 50.0% | |
| TCCCTGTATGTCATTCGAGG+GGG | - | chr7_1:5464210-5464229 | None:intergenic | 50.0% | |
| ACATGGTTGGAGAGATGGAG+AGG | + | chr7_1:5464418-5464437 | Msa1006690:CDS | 50.0% | |
| TCAATGGCAGCGATAATGCG+AGG | - | chr7_1:5463405-5463424 | None:intergenic | 50.0% | |
| TCGCATTATCGCTGCCATTG+AGG | + | chr7_1:5463404-5463423 | Msa1006690:CDS | 50.0% | |
| TTGTGTTCAGGTGTGAGCTG+AGG | + | chr7_1:5463541-5463560 | Msa1006690:intron | 50.0% | |
| TCCCCCTCGAATGACATACA+GGG | + | chr7_1:5464206-5464225 | Msa1006690:intron | 50.0% | |
| TCCCTGTATGTCATTCGAGG+GGG | - | chr7_1:5464210-5464229 | None:intergenic | 50.0% | |
| ACATGGTTGGAGAGATGGAG+AGG | + | chr7_1:5464418-5464437 | Msa1006690:CDS | 50.0% | |
| TGAACGTGGCATGCCTTTGG+AGG | + | chr7_1:5463904-5463923 | Msa1006690:intron | 55.0% | |
| CTCCCCCTCGAATGACATAC+AGG | + | chr7_1:5464205-5464224 | Msa1006690:intron | 55.0% | |
| TGAACGTGGCATGCCTTTGG+AGG | + | chr7_1:5463904-5463923 | Msa1006690:intron | 55.0% | |
| CTCCCCCTCGAATGACATAC+AGG | + | chr7_1:5464205-5464224 | Msa1006690:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 5463036 | 5464595 | 5463036 | ID=Msa1006690;Name=Msa1006690 |
| chr7_1 | mRNA | 5463036 | 5464595 | 5463036 | ID=Msa1006690-mRNA-1;Parent=Msa1006690;Name=Msa1006690-mRNA-1;_AED=0.11;_eAED=0.11;_QI=37|0.33|0.25|1|1|1|4|0|276 |
| chr7_1 | exon | 5463036 | 5463210 | 5463036 | ID=Msa1006690-mRNA-1:exon:1730;Parent=Msa1006690-mRNA-1 |
| chr7_1 | exon | 5463321 | 5463442 | 5463321 | ID=Msa1006690-mRNA-1:exon:1731;Parent=Msa1006690-mRNA-1 |
| chr7_1 | exon | 5463551 | 5463752 | 5463551 | ID=Msa1006690-mRNA-1:exon:1732;Parent=Msa1006690-mRNA-1 |
| chr7_1 | exon | 5464227 | 5464595 | 5464227 | ID=Msa1006690-mRNA-1:exon:1733;Parent=Msa1006690-mRNA-1 |
| chr7_1 | five_prime_UTR | 5463036 | 5463072 | 5463036 | ID=Msa1006690-mRNA-1:five_prime_utr;Parent=Msa1006690-mRNA-1 |
| chr7_1 | CDS | 5463073 | 5463210 | 5463073 | ID=Msa1006690-mRNA-1:cds;Parent=Msa1006690-mRNA-1 |
| chr7_1 | CDS | 5463321 | 5463442 | 5463321 | ID=Msa1006690-mRNA-1:cds;Parent=Msa1006690-mRNA-1 |
| chr7_1 | CDS | 5463551 | 5463752 | 5463551 | ID=Msa1006690-mRNA-1:cds;Parent=Msa1006690-mRNA-1 |
| chr7_1 | CDS | 5464227 | 5464595 | 5464227 | ID=Msa1006690-mRNA-1:cds;Parent=Msa1006690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
