Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1048620 | XP_003597628.2 | 97.826 | 276 | 6 | 0 | 1 | 276 | 1 | 276 | 0.0 | 557 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1048620 | sp|Q9FZ62|PPSP2_ARATH | 61.277 | 235 | 90 | 1 | 4 | 237 | 7 | 241 | 1.96e-106 | 313 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1048620 | B7FI56 | 97.826 | 276 | 6 | 0 | 1 | 276 | 1 | 276 | 0.0 | 557 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0445040 | Msa1048620 | 0.800343 | 1.506700e-48 | -8.615850e-47 |
| Msa1006690 | Msa1048620 | 0.828852 | 7.141648e-55 | -8.615850e-47 |
| Msa1048600 | Msa1048620 | 0.989821 | 8.507828e-180 | -8.615850e-47 |
| Msa1048620 | Msa1130350 | 0.802366 | 5.803783e-49 | -8.615850e-47 |
| Msa1048620 | Msa1135950 | 0.855180 | 7.499216e-62 | -8.615850e-47 |
| Msa1048620 | Msa1441200 | 0.801590 | 8.379962e-49 | -8.615850e-47 |
| Msa0256270 | Msa1048620 | 0.808680 | 2.749046e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1048620 | MtrunA17_Chr2g0330491 | 97.826 | 276 | 6 | 0 | 1 | 276 | 1 | 276 | 0.0 | 557 |
| Msa1048620 | MtrunA17_Chr8g0341701 | 57.565 | 271 | 111 | 1 | 4 | 274 | 5 | 271 | 2.08e-115 | 332 |
| Msa1048620 | MtrunA17_Chr8g0341731 | 56.250 | 272 | 114 | 3 | 4 | 274 | 5 | 272 | 6.08e-113 | 326 |
| Msa1048620 | MtrunA17_Chr2g0330511 | 56.934 | 274 | 113 | 2 | 1 | 274 | 1 | 269 | 2.73e-112 | 324 |
| Msa1048620 | MtrunA17_Chr8g0341741 | 56.250 | 272 | 114 | 2 | 4 | 274 | 5 | 272 | 5.18e-112 | 324 |
| Msa1048620 | MtrunA17_Chr8g0341721 | 57.143 | 259 | 107 | 1 | 4 | 262 | 5 | 259 | 5.03e-111 | 321 |
| Msa1048620 | MtrunA17_Chr2g0309111 | 56.934 | 274 | 114 | 1 | 1 | 274 | 45 | 314 | 3.28e-110 | 321 |
| Msa1048620 | MtrunA17_Chr8g0389271 | 49.580 | 238 | 117 | 3 | 4 | 239 | 2 | 238 | 1.79e-84 | 253 |
| Msa1048620 | MtrunA17_Chr2g0330501 | 76.623 | 77 | 18 | 0 | 199 | 275 | 1 | 77 | 2.85e-35 | 121 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1048620 | AT1G17710.1 | 61.277 | 235 | 90 | 1 | 4 | 237 | 7 | 241 | 1.99e-107 | 313 |
| Msa1048620 | AT1G73010.1 | 55.396 | 278 | 117 | 3 | 4 | 274 | 14 | 291 | 3.94e-105 | 307 |
| Msa1048620 | AT1G17710.2 | 59.896 | 192 | 76 | 1 | 47 | 237 | 18 | 209 | 9.86e-83 | 249 |
| Msa1048620 | AT4G29530.1 | 49.789 | 237 | 118 | 1 | 1 | 236 | 1 | 237 | 1.17e-82 | 248 |
| Msa1048620 | AT4G29530.2 | 47.644 | 191 | 99 | 1 | 47 | 236 | 36 | 226 | 2.07e-60 | 191 |
Find 48 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAATGTGATAGTGATAAT+TGG | 0.238396 | 7_2:+10361037 | Msa1048620:CDS |
| GCAAATGCCTTGCACATATT+TGG | 0.275445 | 7_2:-10361717 | None:intergenic |
| TTAGGAACTGATAGAGCTTC+AGG | 0.281232 | 7_2:-10362329 | None:intergenic |
| CCTTCTTCACTAACATAACT+TGG | 0.318088 | 7_2:-10361630 | None:intergenic |
| AAATTGTAGAAGTTCTTAAT+AGG | 0.333392 | 7_2:+10361288 | Msa1048620:CDS |
| CTCAATGCAAAGTTCATTCT+AGG | 0.337021 | 7_2:-10362113 | None:intergenic |
| AGCTTCTTCCTAGCATGCTT+TGG | 0.339956 | 7_2:+10361097 | Msa1048620:CDS |
| AATTGGGTTCTTGATGAGTT+TGG | 0.346908 | 7_2:+10361054 | Msa1048620:CDS |
| ATCATCAACAAAGCTAATAT+TGG | 0.348472 | 7_2:+10362224 | Msa1048620:CDS |
| ATTGAGGCTGCTTATTCTCT+AGG | 0.365751 | 7_2:+10361341 | Msa1048620:CDS |
| CAAAATTCACTTGATGATGA+AGG | 0.378739 | 7_2:+10362008 | Msa1048620:CDS |
| GTGATAATGCGAGGATGAAT+TGG | 0.382658 | 7_2:-10361314 | None:intergenic |
| CCAAGTTATGTTAGTGAAGA+AGG | 0.398221 | 7_2:+10361630 | Msa1048620:CDS |
| AACAAAGCTAATATTGGTAA+AGG | 0.419483 | 7_2:+10362230 | Msa1048620:CDS |
| ATCTCAGTTGATTGCAAGAT+GGG | 0.430587 | 7_2:+10362275 | Msa1048620:CDS |
| AAGAAGAAAATCATCTACTT+AGG | 0.467585 | 7_2:+10362032 | Msa1048620:CDS |
| ACAAAGCTAATATTGGTAAA+GGG | 0.467952 | 7_2:+10362231 | Msa1048620:CDS |
| ATTGGTAAAGGGAACATTGT+TGG | 0.470539 | 7_2:+10362242 | Msa1048620:CDS |
| CATGTACATGGTTGGAGAGA+TGG | 0.479326 | 7_2:+10362173 | Msa1048620:CDS |
| TGAATGTGATAGTGATAATT+GGG | 0.488124 | 7_2:+10361038 | Msa1048620:CDS |
| TAGGAACTGATAGAGCTTCA+GGG | 0.502197 | 7_2:-10362328 | None:intergenic |
| TAGAGAATAAGCAGCCTCAA+TGG | 0.509736 | 7_2:-10361339 | None:intergenic |
| TTGAGGCTGCTTATTCTCTA+GGG | 0.512196 | 7_2:+10361342 | Msa1048620:CDS |
| AAAATCATCTACTTAGGAGA+TGG | 0.512607 | 7_2:+10362038 | Msa1048620:CDS |
| CTTCTTCACTAACATAACTT+GGG | 0.522722 | 7_2:-10361629 | None:intergenic |
| AGAGGATTCCAAAGCATGCT+AGG | 0.522882 | 7_2:-10361105 | None:intergenic |
| CATCTCAGTTGATTGCAAGA+TGG | 0.524133 | 7_2:+10362274 | Msa1048620:CDS |
| CTCTCTTTGAGCTTTAGACT+AGG | 0.537244 | 7_2:-10362077 | None:intergenic |
| GATTATCTAAAATCTTCTCA+TGG | 0.538879 | 7_2:+10361678 | Msa1048620:CDS |
| TATAATGGCTGGAGTTGTAG+TGG | 0.539821 | 7_2:+10360990 | Msa1048620:exon |
| GACATAAAGGCACATGTACA+TGG | 0.547678 | 7_2:+10362161 | Msa1048620:CDS |
| CATGCTTTGGAATCCTCTCA+TGG | 0.547902 | 7_2:+10361110 | Msa1048620:CDS |
| CAAGTTATGTTAGTGAAGAA+GGG | 0.557919 | 7_2:+10361631 | Msa1048620:CDS |
| TAAAGGCACATGTACATGGT+TGG | 0.564702 | 7_2:+10362165 | Msa1048620:CDS |
| TTGCACATATTTGGTGGACA+AGG | 0.565763 | 7_2:-10361708 | None:intergenic |
| TGACATACAGGGAAAGGTGA+TGG | 0.566260 | 7_2:+10361977 | Msa1048620:intron |
| ATCTACTTAGGAGATGGAAG+TGG | 0.574030 | 7_2:+10362044 | Msa1048620:CDS |
| AATGCCTTGCACATATTTGG+TGG | 0.581915 | 7_2:-10361714 | None:intergenic |
| TGCACATATTTGGTGGACAA+GGG | 0.598008 | 7_2:-10361707 | None:intergenic |
| AAAGTAAAGAAGACCATGAG+AGG | 0.618460 | 7_2:-10361123 | None:intergenic |
| TCGCATTATCACTGCCATTG+AGG | 0.620838 | 7_2:+10361325 | Msa1048620:CDS |
| TTGTCCACCAAATATGTGCA+AGG | 0.634563 | 7_2:+10361710 | Msa1048620:CDS |
| ATGAATGAACTTCATGCACA+AGG | 0.639690 | 7_2:+10361251 | Msa1048620:CDS |
| TTGTGTTCAGGTGTGAGCTG+AGG | 0.644223 | 7_2:+10361520 | Msa1048620:intron |
| ACATGGTTGGAGAGATGGAG+AGG | 0.648554 | 7_2:+10362178 | Msa1048620:CDS |
| TCTCAGTTGATTGCAAGATG+GGG | 0.664938 | 7_2:+10362276 | Msa1048620:CDS |
| GTTATGTTAGTGAAGAAGGG+AGG | 0.681207 | 7_2:+10361634 | Msa1048620:CDS |
| TCAATGGCAGTGATAATGCG+AGG | 0.688273 | 7_2:-10361323 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAATTATTTCTTTAACT+AGG | - | chr7_2:10361203-10361222 | None:intergenic | 10.0% |
| !!! | ATAAAATTATTTCTTTAACT+AGG | - | chr7_2:10361203-10361222 | None:intergenic | 10.0% |
| !!! | TATTAGAAGCATTAAAATAA+AGG | - | chr7_2:10361149-10361168 | None:intergenic | 15.0% |
| !!! | TATTTGTCCTTAAATTTTAT+AGG | + | chr7_2:10361220-10361239 | Msa1048620:intron | 15.0% |
| !!! | ATTTTGTCCTATAAAATTTA+AGG | - | chr7_2:10361230-10361249 | None:intergenic | 15.0% |
| !! | TAGTATGAGAATAATTTATA+CGG | + | chr7_2:10361412-10361431 | Msa1048620:intron | 15.0% |
| !! | TAAAAATTCAAATGACATAA+AGG | + | chr7_2:10362148-10362167 | Msa1048620:CDS | 15.0% |
| !!! | TATTAGAAGCATTAAAATAA+AGG | - | chr7_2:10361149-10361168 | None:intergenic | 15.0% |
| !!! | TATTTGTCCTTAAATTTTAT+AGG | + | chr7_2:10361220-10361239 | Msa1048620:intron | 15.0% |
| !!! | ATTTTGTCCTATAAAATTTA+AGG | - | chr7_2:10361230-10361249 | None:intergenic | 15.0% |
| !! | TAGTATGAGAATAATTTATA+CGG | + | chr7_2:10361412-10361431 | Msa1048620:intron | 15.0% |
| !! | TAAAAATTCAAATGACATAA+AGG | + | chr7_2:10362148-10362167 | Msa1048620:CDS | 15.0% |
| !!! | AGCTTTTTGTACATTTATAA+TGG | + | chr7_2:10360975-10360994 | Msa1048620:exon | 20.0% |
| !! | AAATTGTAGAAGTTCTTAAT+AGG | + | chr7_2:10361288-10361307 | Msa1048620:CDS | 20.0% |
| !! | TGACATATAAATAGATTTAG+AGG | - | chr7_2:10361747-10361766 | None:intergenic | 20.0% |
| !!! | TAAGATGTGATTTTATGTAT+AGG | - | chr7_2:10361900-10361919 | None:intergenic | 20.0% |
| !!! | AGCTTTTTGTACATTTATAA+TGG | + | chr7_2:10360975-10360994 | Msa1048620:exon | 20.0% |
| !! | AAATTGTAGAAGTTCTTAAT+AGG | + | chr7_2:10361288-10361307 | Msa1048620:CDS | 20.0% |
| !! | TGACATATAAATAGATTTAG+AGG | - | chr7_2:10361747-10361766 | None:intergenic | 20.0% |
| !!! | TAAGATGTGATTTTATGTAT+AGG | - | chr7_2:10361900-10361919 | None:intergenic | 20.0% |
| !! | TTTTGTACATTTATAATGGC+TGG | + | chr7_2:10360979-10360998 | Msa1048620:exon | 25.0% |
| !! | TTGAATGTGATAGTGATAAT+TGG | + | chr7_2:10361037-10361056 | Msa1048620:CDS | 25.0% |
| !! | TGAATGTGATAGTGATAATT+GGG | + | chr7_2:10361038-10361057 | Msa1048620:CDS | 25.0% |
| ! | AAGATGAAATATTTGTGTTC+AGG | + | chr7_2:10361508-10361527 | Msa1048620:intron | 25.0% |
| !!! | AAACAATTTTGAAGCATCAT+GGG | + | chr7_2:10361574-10361593 | Msa1048620:CDS | 25.0% |
| !! | GATTTTAGATAATCATGGTA+GGG | - | chr7_2:10361672-10361691 | None:intergenic | 25.0% |
| !! | AGATTTTAGATAATCATGGT+AGG | - | chr7_2:10361673-10361692 | None:intergenic | 25.0% |
| !! | GAGAAGATTTTAGATAATCA+TGG | - | chr7_2:10361677-10361696 | None:intergenic | 25.0% |
| !! | GATTATCTAAAATCTTCTCA+TGG | + | chr7_2:10361678-10361697 | Msa1048620:CDS | 25.0% |
| ! | TATGTCAATGTCATAATCAA+AGG | + | chr7_2:10361769-10361788 | Msa1048620:intron | 25.0% |
| ! | AAGAAGAAAATCATCTACTT+AGG | + | chr7_2:10362032-10362051 | Msa1048620:CDS | 25.0% |
| ! | ATCATCAACAAAGCTAATAT+TGG | + | chr7_2:10362224-10362243 | Msa1048620:CDS | 25.0% |
| ! | AACAAAGCTAATATTGGTAA+AGG | + | chr7_2:10362230-10362249 | Msa1048620:CDS | 25.0% |
| ! | ACAAAGCTAATATTGGTAAA+GGG | + | chr7_2:10362231-10362250 | Msa1048620:CDS | 25.0% |
| !! | TTTTGTACATTTATAATGGC+TGG | + | chr7_2:10360979-10360998 | Msa1048620:exon | 25.0% |
| !! | TTGAATGTGATAGTGATAAT+TGG | + | chr7_2:10361037-10361056 | Msa1048620:CDS | 25.0% |
| !! | TGAATGTGATAGTGATAATT+GGG | + | chr7_2:10361038-10361057 | Msa1048620:CDS | 25.0% |
| ! | AAGATGAAATATTTGTGTTC+AGG | + | chr7_2:10361508-10361527 | Msa1048620:intron | 25.0% |
| !!! | AAACAATTTTGAAGCATCAT+GGG | + | chr7_2:10361574-10361593 | Msa1048620:CDS | 25.0% |
| !! | GATTTTAGATAATCATGGTA+GGG | - | chr7_2:10361672-10361691 | None:intergenic | 25.0% |
| !! | AGATTTTAGATAATCATGGT+AGG | - | chr7_2:10361673-10361692 | None:intergenic | 25.0% |
| !! | GAGAAGATTTTAGATAATCA+TGG | - | chr7_2:10361677-10361696 | None:intergenic | 25.0% |
| !! | GATTATCTAAAATCTTCTCA+TGG | + | chr7_2:10361678-10361697 | Msa1048620:CDS | 25.0% |
| ! | TATGTCAATGTCATAATCAA+AGG | + | chr7_2:10361769-10361788 | Msa1048620:intron | 25.0% |
| ! | AAGAAGAAAATCATCTACTT+AGG | + | chr7_2:10362032-10362051 | Msa1048620:CDS | 25.0% |
| ! | ATCATCAACAAAGCTAATAT+TGG | + | chr7_2:10362224-10362243 | Msa1048620:CDS | 25.0% |
| ! | AACAAAGCTAATATTGGTAA+AGG | + | chr7_2:10362230-10362249 | Msa1048620:CDS | 25.0% |
| ! | ACAAAGCTAATATTGGTAAA+GGG | + | chr7_2:10362231-10362250 | Msa1048620:CDS | 25.0% |
| !!! | GAAACAATTTTGAAGCATCA+TGG | + | chr7_2:10361573-10361592 | Msa1048620:CDS | 30.0% |
| !!! | AACAATTTTGAAGCATCATG+GGG | + | chr7_2:10361575-10361594 | Msa1048620:CDS | 30.0% |
| CTTCTTCACTAACATAACTT+GGG | - | chr7_2:10361632-10361651 | None:intergenic | 30.0% | |
| CAAGTTATGTTAGTGAAGAA+GGG | + | chr7_2:10361631-10361650 | Msa1048620:CDS | 30.0% | |
| !! | CAAAATTCACTTGATGATGA+AGG | + | chr7_2:10362008-10362027 | Msa1048620:CDS | 30.0% |
| AAAATCATCTACTTAGGAGA+TGG | + | chr7_2:10362038-10362057 | Msa1048620:CDS | 30.0% | |
| ! | CAATCAACTGAGATGATTTT+TGG | - | chr7_2:10362269-10362288 | None:intergenic | 30.0% |
| !!! | GAAACAATTTTGAAGCATCA+TGG | + | chr7_2:10361573-10361592 | Msa1048620:CDS | 30.0% |
| !!! | AACAATTTTGAAGCATCATG+GGG | + | chr7_2:10361575-10361594 | Msa1048620:CDS | 30.0% |
| CTTCTTCACTAACATAACTT+GGG | - | chr7_2:10361632-10361651 | None:intergenic | 30.0% | |
| CAAGTTATGTTAGTGAAGAA+GGG | + | chr7_2:10361631-10361650 | Msa1048620:CDS | 30.0% | |
| !! | CAAAATTCACTTGATGATGA+AGG | + | chr7_2:10362008-10362027 | Msa1048620:CDS | 30.0% |
| AAAATCATCTACTTAGGAGA+TGG | + | chr7_2:10362038-10362057 | Msa1048620:CDS | 30.0% | |
| ! | CAATCAACTGAGATGATTTT+TGG | - | chr7_2:10362269-10362288 | None:intergenic | 30.0% |
| AATTGGGTTCTTGATGAGTT+TGG | + | chr7_2:10361054-10361073 | Msa1048620:CDS | 35.0% | |
| AAAGTAAAGAAGACCATGAG+AGG | - | chr7_2:10361126-10361145 | None:intergenic | 35.0% | |
| ATGAATGAACTTCATGCACA+AGG | + | chr7_2:10361251-10361270 | Msa1048620:CDS | 35.0% | |
| TCATGCACAAGGAAAAACAA+TGG | + | chr7_2:10361262-10361281 | Msa1048620:CDS | 35.0% | |
| CCTTCTTCACTAACATAACT+TGG | - | chr7_2:10361633-10361652 | None:intergenic | 35.0% | |
| CCAAGTTATGTTAGTGAAGA+AGG | + | chr7_2:10361630-10361649 | Msa1048620:CDS | 35.0% | |
| ! | ACGATTTTGCCTTTTTGTGT+AGG | - | chr7_2:10361802-10361821 | None:intergenic | 35.0% |
| CTCAATGCAAAGTTCATTCT+AGG | - | chr7_2:10362116-10362135 | None:intergenic | 35.0% | |
| ATTGGTAAAGGGAACATTGT+TGG | + | chr7_2:10362242-10362261 | Msa1048620:CDS | 35.0% | |
| ATCTCAGTTGATTGCAAGAT+GGG | + | chr7_2:10362275-10362294 | Msa1048620:CDS | 35.0% | |
| AATTGGGTTCTTGATGAGTT+TGG | + | chr7_2:10361054-10361073 | Msa1048620:CDS | 35.0% | |
| AAAGTAAAGAAGACCATGAG+AGG | - | chr7_2:10361126-10361145 | None:intergenic | 35.0% | |
| ATGAATGAACTTCATGCACA+AGG | + | chr7_2:10361251-10361270 | Msa1048620:CDS | 35.0% | |
| TCATGCACAAGGAAAAACAA+TGG | + | chr7_2:10361262-10361281 | Msa1048620:CDS | 35.0% | |
| CCTTCTTCACTAACATAACT+TGG | - | chr7_2:10361633-10361652 | None:intergenic | 35.0% | |
| CCAAGTTATGTTAGTGAAGA+AGG | + | chr7_2:10361630-10361649 | Msa1048620:CDS | 35.0% | |
| ! | ACGATTTTGCCTTTTTGTGT+AGG | - | chr7_2:10361802-10361821 | None:intergenic | 35.0% |
| CTCAATGCAAAGTTCATTCT+AGG | - | chr7_2:10362116-10362135 | None:intergenic | 35.0% | |
| ATTGGTAAAGGGAACATTGT+TGG | + | chr7_2:10362242-10362261 | Msa1048620:CDS | 35.0% | |
| ATCTCAGTTGATTGCAAGAT+GGG | + | chr7_2:10362275-10362294 | Msa1048620:CDS | 35.0% | |
| TATAATGGCTGGAGTTGTAG+TGG | + | chr7_2:10360990-10361009 | Msa1048620:exon | 40.0% | |
| ! | GTGATAATGCGAGGATGAAT+TGG | - | chr7_2:10361317-10361336 | None:intergenic | 40.0% |
| TAGAGAATAAGCAGCCTCAA+TGG | - | chr7_2:10361342-10361361 | None:intergenic | 40.0% | |
| ATTGAGGCTGCTTATTCTCT+AGG | + | chr7_2:10361341-10361360 | Msa1048620:CDS | 40.0% | |
| TTGAGGCTGCTTATTCTCTA+GGG | + | chr7_2:10361342-10361361 | Msa1048620:CDS | 40.0% | |
| GTTATGTTAGTGAAGAAGGG+AGG | + | chr7_2:10361634-10361653 | Msa1048620:CDS | 40.0% | |
| ! | TGCACATATTTGGTGGACAA+GGG | - | chr7_2:10361710-10361729 | None:intergenic | 40.0% |
| ! | TTGCACATATTTGGTGGACA+AGG | - | chr7_2:10361711-10361730 | None:intergenic | 40.0% |
| TTGTCCACCAAATATGTGCA+AGG | + | chr7_2:10361710-10361729 | Msa1048620:CDS | 40.0% | |
| AATGCCTTGCACATATTTGG+TGG | - | chr7_2:10361717-10361736 | None:intergenic | 40.0% | |
| GCAAATGCCTTGCACATATT+TGG | - | chr7_2:10361720-10361739 | None:intergenic | 40.0% | |
| GGAATTCTGCCTACACAAAA+AGG | + | chr7_2:10361790-10361809 | Msa1048620:intron | 40.0% | |
| TTTCCCTGTATGTCATTCGA+GGG | - | chr7_2:10361972-10361991 | None:intergenic | 40.0% | |
| ATCTACTTAGGAGATGGAAG+TGG | + | chr7_2:10362044-10362063 | Msa1048620:CDS | 40.0% | |
| !! | CTCTCTTTGAGCTTTAGACT+AGG | - | chr7_2:10362080-10362099 | None:intergenic | 40.0% |
| ! | GACATAAAGGCACATGTACA+TGG | + | chr7_2:10362161-10362180 | Msa1048620:CDS | 40.0% |
| ! | TAAAGGCACATGTACATGGT+TGG | + | chr7_2:10362165-10362184 | Msa1048620:CDS | 40.0% |
| CATCTCAGTTGATTGCAAGA+TGG | + | chr7_2:10362274-10362293 | Msa1048620:CDS | 40.0% | |
| TCTCAGTTGATTGCAAGATG+GGG | + | chr7_2:10362276-10362295 | Msa1048620:CDS | 40.0% | |
| TAGGAACTGATAGAGCTTCA+GGG | - | chr7_2:10362331-10362350 | None:intergenic | 40.0% | |
| TTAGGAACTGATAGAGCTTC+AGG | - | chr7_2:10362332-10362351 | None:intergenic | 40.0% | |
| TATAATGGCTGGAGTTGTAG+TGG | + | chr7_2:10360990-10361009 | Msa1048620:exon | 40.0% | |
| ! | GTGATAATGCGAGGATGAAT+TGG | - | chr7_2:10361317-10361336 | None:intergenic | 40.0% |
| TAGAGAATAAGCAGCCTCAA+TGG | - | chr7_2:10361342-10361361 | None:intergenic | 40.0% | |
| ATTGAGGCTGCTTATTCTCT+AGG | + | chr7_2:10361341-10361360 | Msa1048620:CDS | 40.0% | |
| TTGAGGCTGCTTATTCTCTA+GGG | + | chr7_2:10361342-10361361 | Msa1048620:CDS | 40.0% | |
| GTTATGTTAGTGAAGAAGGG+AGG | + | chr7_2:10361634-10361653 | Msa1048620:CDS | 40.0% | |
| ! | TGCACATATTTGGTGGACAA+GGG | - | chr7_2:10361710-10361729 | None:intergenic | 40.0% |
| ! | TTGCACATATTTGGTGGACA+AGG | - | chr7_2:10361711-10361730 | None:intergenic | 40.0% |
| TTGTCCACCAAATATGTGCA+AGG | + | chr7_2:10361710-10361729 | Msa1048620:CDS | 40.0% | |
| AATGCCTTGCACATATTTGG+TGG | - | chr7_2:10361717-10361736 | None:intergenic | 40.0% | |
| GCAAATGCCTTGCACATATT+TGG | - | chr7_2:10361720-10361739 | None:intergenic | 40.0% | |
| GGAATTCTGCCTACACAAAA+AGG | + | chr7_2:10361790-10361809 | Msa1048620:intron | 40.0% | |
| TTTCCCTGTATGTCATTCGA+GGG | - | chr7_2:10361972-10361991 | None:intergenic | 40.0% | |
| ATCTACTTAGGAGATGGAAG+TGG | + | chr7_2:10362044-10362063 | Msa1048620:CDS | 40.0% | |
| !! | CTCTCTTTGAGCTTTAGACT+AGG | - | chr7_2:10362080-10362099 | None:intergenic | 40.0% |
| ! | GACATAAAGGCACATGTACA+TGG | + | chr7_2:10362161-10362180 | Msa1048620:CDS | 40.0% |
| ! | TAAAGGCACATGTACATGGT+TGG | + | chr7_2:10362165-10362184 | Msa1048620:CDS | 40.0% |
| CATCTCAGTTGATTGCAAGA+TGG | + | chr7_2:10362274-10362293 | Msa1048620:CDS | 40.0% | |
| TCTCAGTTGATTGCAAGATG+GGG | + | chr7_2:10362276-10362295 | Msa1048620:CDS | 40.0% | |
| TAGGAACTGATAGAGCTTCA+GGG | - | chr7_2:10362331-10362350 | None:intergenic | 40.0% | |
| TTAGGAACTGATAGAGCTTC+AGG | - | chr7_2:10362332-10362351 | None:intergenic | 40.0% | |
| AGCTTCTTCCTAGCATGCTT+TGG | + | chr7_2:10361097-10361116 | Msa1048620:CDS | 45.0% | |
| AGAGGATTCCAAAGCATGCT+AGG | - | chr7_2:10361108-10361127 | None:intergenic | 45.0% | |
| !! | CATGCTTTGGAATCCTCTCA+TGG | + | chr7_2:10361110-10361129 | Msa1048620:CDS | 45.0% |
| ! | TCAATGGCAGTGATAATGCG+AGG | - | chr7_2:10361326-10361345 | None:intergenic | 45.0% |
| TCGCATTATCACTGCCATTG+AGG | + | chr7_2:10361325-10361344 | Msa1048620:CDS | 45.0% | |
| TTCCCTGTATGTCATTCGAG+GGG | - | chr7_2:10361971-10361990 | None:intergenic | 45.0% | |
| CTTTCCCTGTATGTCATTCG+AGG | - | chr7_2:10361973-10361992 | None:intergenic | 45.0% | |
| CTCGAATGACATACAGGGAA+AGG | + | chr7_2:10361971-10361990 | Msa1048620:intron | 45.0% | |
| TGACATACAGGGAAAGGTGA+TGG | + | chr7_2:10361977-10361996 | Msa1048620:intron | 45.0% | |
| CATGTACATGGTTGGAGAGA+TGG | + | chr7_2:10362173-10362192 | Msa1048620:CDS | 45.0% | |
| AGCTTCTTCCTAGCATGCTT+TGG | + | chr7_2:10361097-10361116 | Msa1048620:CDS | 45.0% | |
| AGAGGATTCCAAAGCATGCT+AGG | - | chr7_2:10361108-10361127 | None:intergenic | 45.0% | |
| !! | CATGCTTTGGAATCCTCTCA+TGG | + | chr7_2:10361110-10361129 | Msa1048620:CDS | 45.0% |
| ! | TCAATGGCAGTGATAATGCG+AGG | - | chr7_2:10361326-10361345 | None:intergenic | 45.0% |
| TCGCATTATCACTGCCATTG+AGG | + | chr7_2:10361325-10361344 | Msa1048620:CDS | 45.0% | |
| TTCCCTGTATGTCATTCGAG+GGG | - | chr7_2:10361971-10361990 | None:intergenic | 45.0% | |
| CTTTCCCTGTATGTCATTCG+AGG | - | chr7_2:10361973-10361992 | None:intergenic | 45.0% | |
| CTCGAATGACATACAGGGAA+AGG | + | chr7_2:10361971-10361990 | Msa1048620:intron | 45.0% | |
| TGACATACAGGGAAAGGTGA+TGG | + | chr7_2:10361977-10361996 | Msa1048620:intron | 45.0% | |
| CATGTACATGGTTGGAGAGA+TGG | + | chr7_2:10362173-10362192 | Msa1048620:CDS | 45.0% | |
| TTGTGTTCAGGTGTGAGCTG+AGG | + | chr7_2:10361520-10361539 | Msa1048620:intron | 50.0% | |
| TCCCCCTCGAATGACATACA+GGG | + | chr7_2:10361966-10361985 | Msa1048620:intron | 50.0% | |
| TCCCTGTATGTCATTCGAGG+GGG | - | chr7_2:10361970-10361989 | None:intergenic | 50.0% | |
| ACATGGTTGGAGAGATGGAG+AGG | + | chr7_2:10362178-10362197 | Msa1048620:CDS | 50.0% | |
| TTGTGTTCAGGTGTGAGCTG+AGG | + | chr7_2:10361520-10361539 | Msa1048620:intron | 50.0% | |
| TCCCCCTCGAATGACATACA+GGG | + | chr7_2:10361966-10361985 | Msa1048620:intron | 50.0% | |
| TCCCTGTATGTCATTCGAGG+GGG | - | chr7_2:10361970-10361989 | None:intergenic | 50.0% | |
| ACATGGTTGGAGAGATGGAG+AGG | + | chr7_2:10362178-10362197 | Msa1048620:CDS | 50.0% | |
| CTCCCCCTCGAATGACATAC+AGG | + | chr7_2:10361965-10361984 | Msa1048620:intron | 55.0% | |
| CTCCCCCTCGAATGACATAC+AGG | + | chr7_2:10361965-10361984 | Msa1048620:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 10360957 | 10362355 | 10360957 | ID=Msa1048620;Name=Msa1048620 |
| chr7_2 | mRNA | 10360957 | 10362355 | 10360957 | ID=Msa1048620-mRNA-1;Parent=Msa1048620;Name=Msa1048620-mRNA-1;_AED=0.10;_eAED=0.10;_QI=37|0.66|0.25|1|1|1|4|0|276 |
| chr7_2 | exon | 10360957 | 10361131 | 10360957 | ID=Msa1048620-mRNA-1:exon:2710;Parent=Msa1048620-mRNA-1 |
| chr7_2 | exon | 10361242 | 10361363 | 10361242 | ID=Msa1048620-mRNA-1:exon:2711;Parent=Msa1048620-mRNA-1 |
| chr7_2 | exon | 10361530 | 10361731 | 10361530 | ID=Msa1048620-mRNA-1:exon:2712;Parent=Msa1048620-mRNA-1 |
| chr7_2 | exon | 10361987 | 10362355 | 10361987 | ID=Msa1048620-mRNA-1:exon:2713;Parent=Msa1048620-mRNA-1 |
| chr7_2 | five_prime_UTR | 10360957 | 10360993 | 10360957 | ID=Msa1048620-mRNA-1:five_prime_utr;Parent=Msa1048620-mRNA-1 |
| chr7_2 | CDS | 10360994 | 10361131 | 10360994 | ID=Msa1048620-mRNA-1:cds;Parent=Msa1048620-mRNA-1 |
| chr7_2 | CDS | 10361242 | 10361363 | 10361242 | ID=Msa1048620-mRNA-1:cds;Parent=Msa1048620-mRNA-1 |
| chr7_2 | CDS | 10361530 | 10361731 | 10361530 | ID=Msa1048620-mRNA-1:cds;Parent=Msa1048620-mRNA-1 |
| chr7_2 | CDS | 10361987 | 10362355 | 10361987 | ID=Msa1048620-mRNA-1:cds;Parent=Msa1048620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
