Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1048600 | XP_003597628.2 | 97.826 | 276 | 6 | 0 | 1 | 276 | 1 | 276 | 0.0 | 557 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1048600 | sp|Q9FZ62|PPSP2_ARATH | 61.277 | 235 | 90 | 1 | 4 | 237 | 7 | 241 | 1.96e-106 | 313 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1048600 | B7FI56 | 97.826 | 276 | 6 | 0 | 1 | 276 | 1 | 276 | 0.0 | 557 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0203070 | Msa1048600 | 0.802402 | 5.705630e-49 | -8.615850e-47 |
| Msa1006690 | Msa1048600 | 0.843150 | 1.672258e-58 | -8.615850e-47 |
| Msa1048600 | Msa1048620 | 0.989821 | 8.507828e-180 | -8.615850e-47 |
| Msa1048600 | Msa1130350 | 0.802041 | 6.770679e-49 | -8.615850e-47 |
| Msa1048600 | Msa1135950 | 0.869408 | 3.167089e-66 | -8.615850e-47 |
| Msa1048600 | Msa1441200 | 0.802501 | 5.444494e-49 | -8.615850e-47 |
| Msa0256270 | Msa1048600 | 0.815171 | 1.059646e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1048600 | MtrunA17_Chr2g0330491 | 97.826 | 276 | 6 | 0 | 1 | 276 | 1 | 276 | 0.0 | 557 |
| Msa1048600 | MtrunA17_Chr8g0341701 | 57.565 | 271 | 111 | 1 | 4 | 274 | 5 | 271 | 2.08e-115 | 332 |
| Msa1048600 | MtrunA17_Chr8g0341731 | 56.250 | 272 | 114 | 3 | 4 | 274 | 5 | 272 | 6.08e-113 | 326 |
| Msa1048600 | MtrunA17_Chr2g0330511 | 56.934 | 274 | 113 | 2 | 1 | 274 | 1 | 269 | 2.73e-112 | 324 |
| Msa1048600 | MtrunA17_Chr8g0341741 | 56.250 | 272 | 114 | 2 | 4 | 274 | 5 | 272 | 5.18e-112 | 324 |
| Msa1048600 | MtrunA17_Chr8g0341721 | 57.143 | 259 | 107 | 1 | 4 | 262 | 5 | 259 | 5.03e-111 | 321 |
| Msa1048600 | MtrunA17_Chr2g0309111 | 56.934 | 274 | 114 | 1 | 1 | 274 | 45 | 314 | 3.28e-110 | 321 |
| Msa1048600 | MtrunA17_Chr8g0389271 | 49.580 | 238 | 117 | 3 | 4 | 239 | 2 | 238 | 1.79e-84 | 253 |
| Msa1048600 | MtrunA17_Chr2g0330501 | 76.623 | 77 | 18 | 0 | 199 | 275 | 1 | 77 | 2.85e-35 | 121 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1048600 | AT1G17710.1 | 61.277 | 235 | 90 | 1 | 4 | 237 | 7 | 241 | 1.99e-107 | 313 |
| Msa1048600 | AT1G73010.1 | 55.396 | 278 | 117 | 3 | 4 | 274 | 14 | 291 | 3.94e-105 | 307 |
| Msa1048600 | AT1G17710.2 | 59.896 | 192 | 76 | 1 | 47 | 237 | 18 | 209 | 9.86e-83 | 249 |
| Msa1048600 | AT4G29530.1 | 49.789 | 237 | 118 | 1 | 1 | 236 | 1 | 237 | 1.17e-82 | 248 |
| Msa1048600 | AT4G29530.2 | 47.644 | 191 | 99 | 1 | 47 | 236 | 36 | 226 | 2.07e-60 | 191 |
Find 48 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAATGTGATAGTGATAAT+TGG | 0.238396 | 7_2:+10347265 | Msa1048600:CDS |
| GCAAATGCCTTGCACATATT+TGG | 0.275445 | 7_2:-10347945 | None:intergenic |
| TTAGGAACTGATAGAGCTTC+AGG | 0.281232 | 7_2:-10348557 | None:intergenic |
| CCTTCTTCACTAACATAACT+TGG | 0.318088 | 7_2:-10347858 | None:intergenic |
| AAATTGTAGAAGTTCTTAAT+AGG | 0.333392 | 7_2:+10347516 | Msa1048600:CDS |
| CTCAATGCAAAGTTCATTCT+AGG | 0.337021 | 7_2:-10348341 | None:intergenic |
| AGCTTCTTCCTAGCATGCTT+TGG | 0.339956 | 7_2:+10347325 | Msa1048600:CDS |
| AATTGGGTTCTTGATGAGTT+TGG | 0.346908 | 7_2:+10347282 | Msa1048600:CDS |
| ATCATCAACAAAGCTAATAT+TGG | 0.348472 | 7_2:+10348452 | Msa1048600:CDS |
| ATTGAGGCTGCTTATTCTCT+AGG | 0.365751 | 7_2:+10347569 | Msa1048600:CDS |
| CAAAATTCACTTGATGATGA+AGG | 0.378739 | 7_2:+10348236 | Msa1048600:CDS |
| GTGATAATGCGAGGATGAAT+TGG | 0.382658 | 7_2:-10347542 | None:intergenic |
| CCAAGTTATGTTAGTGAAGA+AGG | 0.398221 | 7_2:+10347858 | Msa1048600:CDS |
| AACAAAGCTAATATTGGTAA+AGG | 0.419483 | 7_2:+10348458 | Msa1048600:CDS |
| ATCTCAGTTGATTGCAAGAT+GGG | 0.430587 | 7_2:+10348503 | Msa1048600:CDS |
| AAGAAGAAAATCATCTACTT+AGG | 0.467585 | 7_2:+10348260 | Msa1048600:CDS |
| ACAAAGCTAATATTGGTAAA+GGG | 0.467952 | 7_2:+10348459 | Msa1048600:CDS |
| ATTGGTAAAGGGAACATTGT+TGG | 0.470539 | 7_2:+10348470 | Msa1048600:CDS |
| CATGTACATGGTTGGAGAGA+TGG | 0.479326 | 7_2:+10348401 | Msa1048600:CDS |
| TGAATGTGATAGTGATAATT+GGG | 0.488124 | 7_2:+10347266 | Msa1048600:CDS |
| TAGGAACTGATAGAGCTTCA+GGG | 0.502197 | 7_2:-10348556 | None:intergenic |
| TAGAGAATAAGCAGCCTCAA+TGG | 0.509736 | 7_2:-10347567 | None:intergenic |
| TTGAGGCTGCTTATTCTCTA+GGG | 0.512196 | 7_2:+10347570 | Msa1048600:CDS |
| AAAATCATCTACTTAGGAGA+TGG | 0.512607 | 7_2:+10348266 | Msa1048600:CDS |
| CTTCTTCACTAACATAACTT+GGG | 0.522722 | 7_2:-10347857 | None:intergenic |
| AGAGGATTCCAAAGCATGCT+AGG | 0.522882 | 7_2:-10347333 | None:intergenic |
| CATCTCAGTTGATTGCAAGA+TGG | 0.524133 | 7_2:+10348502 | Msa1048600:CDS |
| CTCTCTTTGAGCTTTAGACT+AGG | 0.537244 | 7_2:-10348305 | None:intergenic |
| GATTATCTAAAATCTTCTCA+TGG | 0.538879 | 7_2:+10347906 | Msa1048600:CDS |
| TATAATGGCTGGAGTTGTAG+TGG | 0.539821 | 7_2:+10347218 | Msa1048600:exon |
| GACATAAAGGCACATGTACA+TGG | 0.547678 | 7_2:+10348389 | Msa1048600:CDS |
| CATGCTTTGGAATCCTCTCA+TGG | 0.547902 | 7_2:+10347338 | Msa1048600:CDS |
| CAAGTTATGTTAGTGAAGAA+GGG | 0.557919 | 7_2:+10347859 | Msa1048600:CDS |
| TAAAGGCACATGTACATGGT+TGG | 0.564702 | 7_2:+10348393 | Msa1048600:CDS |
| TTGCACATATTTGGTGGACA+AGG | 0.565763 | 7_2:-10347936 | None:intergenic |
| TGACATACAGGGAAAGGTGA+TGG | 0.566260 | 7_2:+10348205 | Msa1048600:intron |
| ATCTACTTAGGAGATGGAAG+TGG | 0.574030 | 7_2:+10348272 | Msa1048600:CDS |
| AATGCCTTGCACATATTTGG+TGG | 0.581915 | 7_2:-10347942 | None:intergenic |
| TGCACATATTTGGTGGACAA+GGG | 0.598008 | 7_2:-10347935 | None:intergenic |
| AAAGTAAAGAAGACCATGAG+AGG | 0.618460 | 7_2:-10347351 | None:intergenic |
| TCGCATTATCACTGCCATTG+AGG | 0.620838 | 7_2:+10347553 | Msa1048600:CDS |
| TTGTCCACCAAATATGTGCA+AGG | 0.634563 | 7_2:+10347938 | Msa1048600:CDS |
| ATGAATGAACTTCATGCACA+AGG | 0.639690 | 7_2:+10347479 | Msa1048600:CDS |
| TTGTGTTCAGGTGTGAGCTG+AGG | 0.644223 | 7_2:+10347748 | Msa1048600:intron |
| ACATGGTTGGAGAGATGGAG+AGG | 0.648554 | 7_2:+10348406 | Msa1048600:CDS |
| TCTCAGTTGATTGCAAGATG+GGG | 0.664938 | 7_2:+10348504 | Msa1048600:CDS |
| GTTATGTTAGTGAAGAAGGG+AGG | 0.681207 | 7_2:+10347862 | Msa1048600:CDS |
| TCAATGGCAGTGATAATGCG+AGG | 0.688273 | 7_2:-10347551 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAATTATTTCTTTAACT+AGG | - | chr7_2:10347431-10347450 | None:intergenic | 10.0% |
| !!! | ATAAAATTATTTCTTTAACT+AGG | - | chr7_2:10347431-10347450 | None:intergenic | 10.0% |
| !!! | TATTAGAAGCATTAAAATAA+AGG | - | chr7_2:10347377-10347396 | None:intergenic | 15.0% |
| !!! | TATTTGTCCTTAAATTTTAT+AGG | + | chr7_2:10347448-10347467 | Msa1048600:intron | 15.0% |
| !!! | ATTTTGTCCTATAAAATTTA+AGG | - | chr7_2:10347458-10347477 | None:intergenic | 15.0% |
| !! | TAGTATGAGAATAATTTATA+CGG | + | chr7_2:10347640-10347659 | Msa1048600:intron | 15.0% |
| !! | TAAAAATTCAAATGACATAA+AGG | + | chr7_2:10348376-10348395 | Msa1048600:CDS | 15.0% |
| !!! | TATTAGAAGCATTAAAATAA+AGG | - | chr7_2:10347377-10347396 | None:intergenic | 15.0% |
| !!! | TATTTGTCCTTAAATTTTAT+AGG | + | chr7_2:10347448-10347467 | Msa1048600:intron | 15.0% |
| !!! | ATTTTGTCCTATAAAATTTA+AGG | - | chr7_2:10347458-10347477 | None:intergenic | 15.0% |
| !! | TAGTATGAGAATAATTTATA+CGG | + | chr7_2:10347640-10347659 | Msa1048600:intron | 15.0% |
| !! | TAAAAATTCAAATGACATAA+AGG | + | chr7_2:10348376-10348395 | Msa1048600:CDS | 15.0% |
| !!! | AGCTTTTTGTACATTTATAA+TGG | + | chr7_2:10347203-10347222 | Msa1048600:exon | 20.0% |
| !! | AAATTGTAGAAGTTCTTAAT+AGG | + | chr7_2:10347516-10347535 | Msa1048600:CDS | 20.0% |
| !! | TGACATATAAATAGATTTAG+AGG | - | chr7_2:10347975-10347994 | None:intergenic | 20.0% |
| !!! | TAAGATGTGATTTTATGTAT+AGG | - | chr7_2:10348128-10348147 | None:intergenic | 20.0% |
| !!! | AGCTTTTTGTACATTTATAA+TGG | + | chr7_2:10347203-10347222 | Msa1048600:exon | 20.0% |
| !! | AAATTGTAGAAGTTCTTAAT+AGG | + | chr7_2:10347516-10347535 | Msa1048600:CDS | 20.0% |
| !! | TGACATATAAATAGATTTAG+AGG | - | chr7_2:10347975-10347994 | None:intergenic | 20.0% |
| !!! | TAAGATGTGATTTTATGTAT+AGG | - | chr7_2:10348128-10348147 | None:intergenic | 20.0% |
| !! | TTTTGTACATTTATAATGGC+TGG | + | chr7_2:10347207-10347226 | Msa1048600:exon | 25.0% |
| !! | TTGAATGTGATAGTGATAAT+TGG | + | chr7_2:10347265-10347284 | Msa1048600:CDS | 25.0% |
| !! | TGAATGTGATAGTGATAATT+GGG | + | chr7_2:10347266-10347285 | Msa1048600:CDS | 25.0% |
| ! | AAGATGAAATATTTGTGTTC+AGG | + | chr7_2:10347736-10347755 | Msa1048600:intron | 25.0% |
| !!! | AAACAATTTTGAAGCATCAT+GGG | + | chr7_2:10347802-10347821 | Msa1048600:CDS | 25.0% |
| !! | GATTTTAGATAATCATGGTA+GGG | - | chr7_2:10347900-10347919 | None:intergenic | 25.0% |
| !! | AGATTTTAGATAATCATGGT+AGG | - | chr7_2:10347901-10347920 | None:intergenic | 25.0% |
| !! | GAGAAGATTTTAGATAATCA+TGG | - | chr7_2:10347905-10347924 | None:intergenic | 25.0% |
| !! | GATTATCTAAAATCTTCTCA+TGG | + | chr7_2:10347906-10347925 | Msa1048600:CDS | 25.0% |
| ! | TATGTCAATGTCATAATCAA+AGG | + | chr7_2:10347997-10348016 | Msa1048600:intron | 25.0% |
| ! | AAGAAGAAAATCATCTACTT+AGG | + | chr7_2:10348260-10348279 | Msa1048600:CDS | 25.0% |
| ! | ATCATCAACAAAGCTAATAT+TGG | + | chr7_2:10348452-10348471 | Msa1048600:CDS | 25.0% |
| ! | AACAAAGCTAATATTGGTAA+AGG | + | chr7_2:10348458-10348477 | Msa1048600:CDS | 25.0% |
| ! | ACAAAGCTAATATTGGTAAA+GGG | + | chr7_2:10348459-10348478 | Msa1048600:CDS | 25.0% |
| !! | TTTTGTACATTTATAATGGC+TGG | + | chr7_2:10347207-10347226 | Msa1048600:exon | 25.0% |
| !! | TTGAATGTGATAGTGATAAT+TGG | + | chr7_2:10347265-10347284 | Msa1048600:CDS | 25.0% |
| !! | TGAATGTGATAGTGATAATT+GGG | + | chr7_2:10347266-10347285 | Msa1048600:CDS | 25.0% |
| ! | AAGATGAAATATTTGTGTTC+AGG | + | chr7_2:10347736-10347755 | Msa1048600:intron | 25.0% |
| !!! | AAACAATTTTGAAGCATCAT+GGG | + | chr7_2:10347802-10347821 | Msa1048600:CDS | 25.0% |
| !! | GATTTTAGATAATCATGGTA+GGG | - | chr7_2:10347900-10347919 | None:intergenic | 25.0% |
| !! | AGATTTTAGATAATCATGGT+AGG | - | chr7_2:10347901-10347920 | None:intergenic | 25.0% |
| !! | GAGAAGATTTTAGATAATCA+TGG | - | chr7_2:10347905-10347924 | None:intergenic | 25.0% |
| !! | GATTATCTAAAATCTTCTCA+TGG | + | chr7_2:10347906-10347925 | Msa1048600:CDS | 25.0% |
| ! | TATGTCAATGTCATAATCAA+AGG | + | chr7_2:10347997-10348016 | Msa1048600:intron | 25.0% |
| ! | AAGAAGAAAATCATCTACTT+AGG | + | chr7_2:10348260-10348279 | Msa1048600:CDS | 25.0% |
| ! | ATCATCAACAAAGCTAATAT+TGG | + | chr7_2:10348452-10348471 | Msa1048600:CDS | 25.0% |
| ! | AACAAAGCTAATATTGGTAA+AGG | + | chr7_2:10348458-10348477 | Msa1048600:CDS | 25.0% |
| ! | ACAAAGCTAATATTGGTAAA+GGG | + | chr7_2:10348459-10348478 | Msa1048600:CDS | 25.0% |
| !!! | GAAACAATTTTGAAGCATCA+TGG | + | chr7_2:10347801-10347820 | Msa1048600:CDS | 30.0% |
| !!! | AACAATTTTGAAGCATCATG+GGG | + | chr7_2:10347803-10347822 | Msa1048600:CDS | 30.0% |
| CTTCTTCACTAACATAACTT+GGG | - | chr7_2:10347860-10347879 | None:intergenic | 30.0% | |
| CAAGTTATGTTAGTGAAGAA+GGG | + | chr7_2:10347859-10347878 | Msa1048600:CDS | 30.0% | |
| !! | CAAAATTCACTTGATGATGA+AGG | + | chr7_2:10348236-10348255 | Msa1048600:CDS | 30.0% |
| AAAATCATCTACTTAGGAGA+TGG | + | chr7_2:10348266-10348285 | Msa1048600:CDS | 30.0% | |
| ! | CAATCAACTGAGATGATTTT+TGG | - | chr7_2:10348497-10348516 | None:intergenic | 30.0% |
| !!! | GAAACAATTTTGAAGCATCA+TGG | + | chr7_2:10347801-10347820 | Msa1048600:CDS | 30.0% |
| !!! | AACAATTTTGAAGCATCATG+GGG | + | chr7_2:10347803-10347822 | Msa1048600:CDS | 30.0% |
| CTTCTTCACTAACATAACTT+GGG | - | chr7_2:10347860-10347879 | None:intergenic | 30.0% | |
| CAAGTTATGTTAGTGAAGAA+GGG | + | chr7_2:10347859-10347878 | Msa1048600:CDS | 30.0% | |
| !! | CAAAATTCACTTGATGATGA+AGG | + | chr7_2:10348236-10348255 | Msa1048600:CDS | 30.0% |
| AAAATCATCTACTTAGGAGA+TGG | + | chr7_2:10348266-10348285 | Msa1048600:CDS | 30.0% | |
| ! | CAATCAACTGAGATGATTTT+TGG | - | chr7_2:10348497-10348516 | None:intergenic | 30.0% |
| AATTGGGTTCTTGATGAGTT+TGG | + | chr7_2:10347282-10347301 | Msa1048600:CDS | 35.0% | |
| AAAGTAAAGAAGACCATGAG+AGG | - | chr7_2:10347354-10347373 | None:intergenic | 35.0% | |
| ATGAATGAACTTCATGCACA+AGG | + | chr7_2:10347479-10347498 | Msa1048600:CDS | 35.0% | |
| TCATGCACAAGGAAAAACAA+TGG | + | chr7_2:10347490-10347509 | Msa1048600:CDS | 35.0% | |
| CCTTCTTCACTAACATAACT+TGG | - | chr7_2:10347861-10347880 | None:intergenic | 35.0% | |
| CCAAGTTATGTTAGTGAAGA+AGG | + | chr7_2:10347858-10347877 | Msa1048600:CDS | 35.0% | |
| ! | ACGATTTTGCCTTTTTGTGT+AGG | - | chr7_2:10348030-10348049 | None:intergenic | 35.0% |
| CTCAATGCAAAGTTCATTCT+AGG | - | chr7_2:10348344-10348363 | None:intergenic | 35.0% | |
| ATTGGTAAAGGGAACATTGT+TGG | + | chr7_2:10348470-10348489 | Msa1048600:CDS | 35.0% | |
| ATCTCAGTTGATTGCAAGAT+GGG | + | chr7_2:10348503-10348522 | Msa1048600:CDS | 35.0% | |
| AATTGGGTTCTTGATGAGTT+TGG | + | chr7_2:10347282-10347301 | Msa1048600:CDS | 35.0% | |
| AAAGTAAAGAAGACCATGAG+AGG | - | chr7_2:10347354-10347373 | None:intergenic | 35.0% | |
| ATGAATGAACTTCATGCACA+AGG | + | chr7_2:10347479-10347498 | Msa1048600:CDS | 35.0% | |
| TCATGCACAAGGAAAAACAA+TGG | + | chr7_2:10347490-10347509 | Msa1048600:CDS | 35.0% | |
| CCTTCTTCACTAACATAACT+TGG | - | chr7_2:10347861-10347880 | None:intergenic | 35.0% | |
| CCAAGTTATGTTAGTGAAGA+AGG | + | chr7_2:10347858-10347877 | Msa1048600:CDS | 35.0% | |
| ! | ACGATTTTGCCTTTTTGTGT+AGG | - | chr7_2:10348030-10348049 | None:intergenic | 35.0% |
| CTCAATGCAAAGTTCATTCT+AGG | - | chr7_2:10348344-10348363 | None:intergenic | 35.0% | |
| ATTGGTAAAGGGAACATTGT+TGG | + | chr7_2:10348470-10348489 | Msa1048600:CDS | 35.0% | |
| ATCTCAGTTGATTGCAAGAT+GGG | + | chr7_2:10348503-10348522 | Msa1048600:CDS | 35.0% | |
| TATAATGGCTGGAGTTGTAG+TGG | + | chr7_2:10347218-10347237 | Msa1048600:exon | 40.0% | |
| ! | GTGATAATGCGAGGATGAAT+TGG | - | chr7_2:10347545-10347564 | None:intergenic | 40.0% |
| TAGAGAATAAGCAGCCTCAA+TGG | - | chr7_2:10347570-10347589 | None:intergenic | 40.0% | |
| ATTGAGGCTGCTTATTCTCT+AGG | + | chr7_2:10347569-10347588 | Msa1048600:CDS | 40.0% | |
| TTGAGGCTGCTTATTCTCTA+GGG | + | chr7_2:10347570-10347589 | Msa1048600:CDS | 40.0% | |
| GTTATGTTAGTGAAGAAGGG+AGG | + | chr7_2:10347862-10347881 | Msa1048600:CDS | 40.0% | |
| ! | TGCACATATTTGGTGGACAA+GGG | - | chr7_2:10347938-10347957 | None:intergenic | 40.0% |
| ! | TTGCACATATTTGGTGGACA+AGG | - | chr7_2:10347939-10347958 | None:intergenic | 40.0% |
| TTGTCCACCAAATATGTGCA+AGG | + | chr7_2:10347938-10347957 | Msa1048600:CDS | 40.0% | |
| AATGCCTTGCACATATTTGG+TGG | - | chr7_2:10347945-10347964 | None:intergenic | 40.0% | |
| GCAAATGCCTTGCACATATT+TGG | - | chr7_2:10347948-10347967 | None:intergenic | 40.0% | |
| GGAATTCTGCCTACACAAAA+AGG | + | chr7_2:10348018-10348037 | Msa1048600:intron | 40.0% | |
| TTTCCCTGTATGTCATTCGA+GGG | - | chr7_2:10348200-10348219 | None:intergenic | 40.0% | |
| ATCTACTTAGGAGATGGAAG+TGG | + | chr7_2:10348272-10348291 | Msa1048600:CDS | 40.0% | |
| !! | CTCTCTTTGAGCTTTAGACT+AGG | - | chr7_2:10348308-10348327 | None:intergenic | 40.0% |
| ! | GACATAAAGGCACATGTACA+TGG | + | chr7_2:10348389-10348408 | Msa1048600:CDS | 40.0% |
| ! | TAAAGGCACATGTACATGGT+TGG | + | chr7_2:10348393-10348412 | Msa1048600:CDS | 40.0% |
| CATCTCAGTTGATTGCAAGA+TGG | + | chr7_2:10348502-10348521 | Msa1048600:CDS | 40.0% | |
| TCTCAGTTGATTGCAAGATG+GGG | + | chr7_2:10348504-10348523 | Msa1048600:CDS | 40.0% | |
| TAGGAACTGATAGAGCTTCA+GGG | - | chr7_2:10348559-10348578 | None:intergenic | 40.0% | |
| TTAGGAACTGATAGAGCTTC+AGG | - | chr7_2:10348560-10348579 | None:intergenic | 40.0% | |
| TATAATGGCTGGAGTTGTAG+TGG | + | chr7_2:10347218-10347237 | Msa1048600:exon | 40.0% | |
| ! | GTGATAATGCGAGGATGAAT+TGG | - | chr7_2:10347545-10347564 | None:intergenic | 40.0% |
| TAGAGAATAAGCAGCCTCAA+TGG | - | chr7_2:10347570-10347589 | None:intergenic | 40.0% | |
| ATTGAGGCTGCTTATTCTCT+AGG | + | chr7_2:10347569-10347588 | Msa1048600:CDS | 40.0% | |
| TTGAGGCTGCTTATTCTCTA+GGG | + | chr7_2:10347570-10347589 | Msa1048600:CDS | 40.0% | |
| GTTATGTTAGTGAAGAAGGG+AGG | + | chr7_2:10347862-10347881 | Msa1048600:CDS | 40.0% | |
| ! | TGCACATATTTGGTGGACAA+GGG | - | chr7_2:10347938-10347957 | None:intergenic | 40.0% |
| ! | TTGCACATATTTGGTGGACA+AGG | - | chr7_2:10347939-10347958 | None:intergenic | 40.0% |
| TTGTCCACCAAATATGTGCA+AGG | + | chr7_2:10347938-10347957 | Msa1048600:CDS | 40.0% | |
| AATGCCTTGCACATATTTGG+TGG | - | chr7_2:10347945-10347964 | None:intergenic | 40.0% | |
| GCAAATGCCTTGCACATATT+TGG | - | chr7_2:10347948-10347967 | None:intergenic | 40.0% | |
| GGAATTCTGCCTACACAAAA+AGG | + | chr7_2:10348018-10348037 | Msa1048600:intron | 40.0% | |
| TTTCCCTGTATGTCATTCGA+GGG | - | chr7_2:10348200-10348219 | None:intergenic | 40.0% | |
| ATCTACTTAGGAGATGGAAG+TGG | + | chr7_2:10348272-10348291 | Msa1048600:CDS | 40.0% | |
| !! | CTCTCTTTGAGCTTTAGACT+AGG | - | chr7_2:10348308-10348327 | None:intergenic | 40.0% |
| ! | GACATAAAGGCACATGTACA+TGG | + | chr7_2:10348389-10348408 | Msa1048600:CDS | 40.0% |
| ! | TAAAGGCACATGTACATGGT+TGG | + | chr7_2:10348393-10348412 | Msa1048600:CDS | 40.0% |
| CATCTCAGTTGATTGCAAGA+TGG | + | chr7_2:10348502-10348521 | Msa1048600:CDS | 40.0% | |
| TCTCAGTTGATTGCAAGATG+GGG | + | chr7_2:10348504-10348523 | Msa1048600:CDS | 40.0% | |
| TAGGAACTGATAGAGCTTCA+GGG | - | chr7_2:10348559-10348578 | None:intergenic | 40.0% | |
| TTAGGAACTGATAGAGCTTC+AGG | - | chr7_2:10348560-10348579 | None:intergenic | 40.0% | |
| AGCTTCTTCCTAGCATGCTT+TGG | + | chr7_2:10347325-10347344 | Msa1048600:CDS | 45.0% | |
| AGAGGATTCCAAAGCATGCT+AGG | - | chr7_2:10347336-10347355 | None:intergenic | 45.0% | |
| !! | CATGCTTTGGAATCCTCTCA+TGG | + | chr7_2:10347338-10347357 | Msa1048600:CDS | 45.0% |
| ! | TCAATGGCAGTGATAATGCG+AGG | - | chr7_2:10347554-10347573 | None:intergenic | 45.0% |
| TCGCATTATCACTGCCATTG+AGG | + | chr7_2:10347553-10347572 | Msa1048600:CDS | 45.0% | |
| TTCCCTGTATGTCATTCGAG+GGG | - | chr7_2:10348199-10348218 | None:intergenic | 45.0% | |
| CTTTCCCTGTATGTCATTCG+AGG | - | chr7_2:10348201-10348220 | None:intergenic | 45.0% | |
| CTCGAATGACATACAGGGAA+AGG | + | chr7_2:10348199-10348218 | Msa1048600:intron | 45.0% | |
| TGACATACAGGGAAAGGTGA+TGG | + | chr7_2:10348205-10348224 | Msa1048600:intron | 45.0% | |
| CATGTACATGGTTGGAGAGA+TGG | + | chr7_2:10348401-10348420 | Msa1048600:CDS | 45.0% | |
| AGCTTCTTCCTAGCATGCTT+TGG | + | chr7_2:10347325-10347344 | Msa1048600:CDS | 45.0% | |
| AGAGGATTCCAAAGCATGCT+AGG | - | chr7_2:10347336-10347355 | None:intergenic | 45.0% | |
| !! | CATGCTTTGGAATCCTCTCA+TGG | + | chr7_2:10347338-10347357 | Msa1048600:CDS | 45.0% |
| ! | TCAATGGCAGTGATAATGCG+AGG | - | chr7_2:10347554-10347573 | None:intergenic | 45.0% |
| TCGCATTATCACTGCCATTG+AGG | + | chr7_2:10347553-10347572 | Msa1048600:CDS | 45.0% | |
| TTCCCTGTATGTCATTCGAG+GGG | - | chr7_2:10348199-10348218 | None:intergenic | 45.0% | |
| CTTTCCCTGTATGTCATTCG+AGG | - | chr7_2:10348201-10348220 | None:intergenic | 45.0% | |
| CTCGAATGACATACAGGGAA+AGG | + | chr7_2:10348199-10348218 | Msa1048600:intron | 45.0% | |
| TGACATACAGGGAAAGGTGA+TGG | + | chr7_2:10348205-10348224 | Msa1048600:intron | 45.0% | |
| CATGTACATGGTTGGAGAGA+TGG | + | chr7_2:10348401-10348420 | Msa1048600:CDS | 45.0% | |
| TTGTGTTCAGGTGTGAGCTG+AGG | + | chr7_2:10347748-10347767 | Msa1048600:intron | 50.0% | |
| TCCCCCTCGAATGACATACA+GGG | + | chr7_2:10348194-10348213 | Msa1048600:intron | 50.0% | |
| TCCCTGTATGTCATTCGAGG+GGG | - | chr7_2:10348198-10348217 | None:intergenic | 50.0% | |
| ACATGGTTGGAGAGATGGAG+AGG | + | chr7_2:10348406-10348425 | Msa1048600:CDS | 50.0% | |
| TTGTGTTCAGGTGTGAGCTG+AGG | + | chr7_2:10347748-10347767 | Msa1048600:intron | 50.0% | |
| TCCCCCTCGAATGACATACA+GGG | + | chr7_2:10348194-10348213 | Msa1048600:intron | 50.0% | |
| TCCCTGTATGTCATTCGAGG+GGG | - | chr7_2:10348198-10348217 | None:intergenic | 50.0% | |
| ACATGGTTGGAGAGATGGAG+AGG | + | chr7_2:10348406-10348425 | Msa1048600:CDS | 50.0% | |
| CTCCCCCTCGAATGACATAC+AGG | + | chr7_2:10348193-10348212 | Msa1048600:intron | 55.0% | |
| CTCCCCCTCGAATGACATAC+AGG | + | chr7_2:10348193-10348212 | Msa1048600:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 10347185 | 10348583 | 10347185 | ID=Msa1048600;Name=Msa1048600 |
| chr7_2 | mRNA | 10347185 | 10348583 | 10347185 | ID=Msa1048600-mRNA-1;Parent=Msa1048600;Name=Msa1048600-mRNA-1;_AED=0.10;_eAED=0.10;_QI=37|0.66|0.25|1|1|1|4|0|276 |
| chr7_2 | exon | 10347185 | 10347359 | 10347185 | ID=Msa1048600-mRNA-1:exon:2706;Parent=Msa1048600-mRNA-1 |
| chr7_2 | exon | 10347470 | 10347591 | 10347470 | ID=Msa1048600-mRNA-1:exon:2707;Parent=Msa1048600-mRNA-1 |
| chr7_2 | exon | 10347758 | 10347959 | 10347758 | ID=Msa1048600-mRNA-1:exon:2708;Parent=Msa1048600-mRNA-1 |
| chr7_2 | exon | 10348215 | 10348583 | 10348215 | ID=Msa1048600-mRNA-1:exon:2709;Parent=Msa1048600-mRNA-1 |
| chr7_2 | five_prime_UTR | 10347185 | 10347221 | 10347185 | ID=Msa1048600-mRNA-1:five_prime_utr;Parent=Msa1048600-mRNA-1 |
| chr7_2 | CDS | 10347222 | 10347359 | 10347222 | ID=Msa1048600-mRNA-1:cds;Parent=Msa1048600-mRNA-1 |
| chr7_2 | CDS | 10347470 | 10347591 | 10347470 | ID=Msa1048600-mRNA-1:cds;Parent=Msa1048600-mRNA-1 |
| chr7_2 | CDS | 10347758 | 10347959 | 10347758 | ID=Msa1048600-mRNA-1:cds;Parent=Msa1048600-mRNA-1 |
| chr7_2 | CDS | 10348215 | 10348583 | 10348215 | ID=Msa1048600-mRNA-1:cds;Parent=Msa1048600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
