Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1135950 | XP_003597628.2 | 98.551 | 276 | 4 | 0 | 1 | 276 | 1 | 276 | 0.0 | 560 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1135950 | sp|Q9FZ62|PPSP2_ARATH | 60.851 | 235 | 91 | 1 | 4 | 237 | 7 | 241 | 1.55e-106 | 313 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1135950 | B7FI56 | 98.551 | 276 | 4 | 0 | 1 | 276 | 1 | 276 | 0.0 | 560 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1006690 | Msa1135950 | 0.915127 | 8.510234e-85 | -8.615850e-47 |
| Msa1048600 | Msa1135950 | 0.869408 | 3.167089e-66 | -8.615850e-47 |
| Msa1048620 | Msa1135950 | 0.855180 | 7.499216e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1135950 | MtrunA17_Chr2g0330491 | 98.551 | 276 | 4 | 0 | 1 | 276 | 1 | 276 | 0.0 | 560 |
| Msa1135950 | MtrunA17_Chr8g0341701 | 57.565 | 271 | 111 | 1 | 4 | 274 | 5 | 271 | 2.91e-116 | 335 |
| Msa1135950 | MtrunA17_Chr8g0341731 | 56.618 | 272 | 113 | 3 | 4 | 274 | 5 | 272 | 9.58e-114 | 328 |
| Msa1135950 | MtrunA17_Chr2g0330511 | 56.934 | 274 | 113 | 2 | 1 | 274 | 1 | 269 | 2.19e-113 | 327 |
| Msa1135950 | MtrunA17_Chr8g0341741 | 55.882 | 272 | 115 | 2 | 4 | 274 | 5 | 272 | 1.57e-112 | 325 |
| Msa1135950 | MtrunA17_Chr8g0341721 | 57.143 | 259 | 107 | 1 | 4 | 262 | 5 | 259 | 7.85e-112 | 323 |
| Msa1135950 | MtrunA17_Chr2g0309111 | 56.934 | 274 | 114 | 1 | 1 | 274 | 45 | 314 | 3.43e-111 | 323 |
| Msa1135950 | MtrunA17_Chr8g0389271 | 49.580 | 238 | 117 | 3 | 4 | 239 | 2 | 238 | 2.39e-85 | 255 |
| Msa1135950 | MtrunA17_Chr2g0330501 | 76.623 | 77 | 18 | 0 | 199 | 275 | 1 | 77 | 2.82e-35 | 121 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1135950 | AT1G17710.1 | 60.851 | 235 | 91 | 1 | 4 | 237 | 7 | 241 | 1.58e-107 | 313 |
| Msa1135950 | AT1G73010.1 | 55.036 | 278 | 118 | 3 | 4 | 274 | 14 | 291 | 4.29e-105 | 307 |
| Msa1135950 | AT4G29530.1 | 50.211 | 237 | 117 | 1 | 1 | 236 | 1 | 237 | 7.21e-84 | 251 |
| Msa1135950 | AT1G17710.2 | 59.896 | 192 | 76 | 1 | 47 | 237 | 18 | 209 | 7.51e-83 | 249 |
| Msa1135950 | AT4G29530.2 | 48.168 | 191 | 98 | 1 | 47 | 236 | 36 | 226 | 1.73e-61 | 194 |
Find 47 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAATGTGATAGTGATAAT+TGG | 0.238396 | 7_4:-3851681 | Msa1135950:CDS |
| GCAATTGCCTTGCACATATT+TGG | 0.255407 | 7_4:+3851001 | None:intergenic |
| TTAGGAACTGATAGAGCTTC+AGG | 0.281232 | 7_4:+3850152 | None:intergenic |
| CCTTCTTCACTAACATAACT+TGG | 0.318088 | 7_4:+3851088 | None:intergenic |
| AAATTGTAGAAGTTCTTAAT+AGG | 0.333392 | 7_4:-3851430 | Msa1135950:CDS |
| CTCAATGCAAAGTTCATTCT+AGG | 0.337021 | 7_4:+3850368 | None:intergenic |
| AGCTTCTTCCTAGCATGCTT+TGG | 0.339956 | 7_4:-3851621 | Msa1135950:CDS |
| AATTGGGTTCTTGATGAGTT+TGG | 0.346908 | 7_4:-3851664 | Msa1135950:CDS |
| ATCATCAACAAAGCTAATAT+TGG | 0.348472 | 7_4:-3850257 | Msa1135950:CDS |
| ATTGAGGCTGCTTATTCTCT+AGG | 0.365751 | 7_4:-3851377 | Msa1135950:CDS |
| CAAAATTCACTTGATGATGA+AGG | 0.378739 | 7_4:-3850473 | Msa1135950:CDS |
| GTGATAATGCGAGGATGAAT+TGG | 0.382658 | 7_4:+3851404 | None:intergenic |
| CCAAGTTATGTTAGTGAAGA+AGG | 0.398221 | 7_4:-3851088 | Msa1135950:CDS |
| AACAAAGCTAATATTGGTAA+AGG | 0.419483 | 7_4:-3850251 | Msa1135950:CDS |
| ATCTCAGTTGATTGCAAGAT+GGG | 0.430587 | 7_4:-3850206 | Msa1135950:CDS |
| AAGAAGAAAATCATCTACTT+AGG | 0.467585 | 7_4:-3850449 | Msa1135950:CDS |
| ACAAAGCTAATATTGGTAAA+GGG | 0.467952 | 7_4:-3850250 | Msa1135950:CDS |
| ATTGGTAAAGGGAACATTGT+TGG | 0.470539 | 7_4:-3850239 | Msa1135950:CDS |
| CATGTACATGGTTGGAGAGA+TGG | 0.479326 | 7_4:-3850308 | Msa1135950:CDS |
| TGAATGTGATAGTGATAATT+GGG | 0.488124 | 7_4:-3851680 | Msa1135950:CDS |
| TAGGAACTGATAGAGCTTCA+GGG | 0.502197 | 7_4:+3850153 | None:intergenic |
| TAGAGAATAAGCAGCCTCAA+TGG | 0.509736 | 7_4:+3851379 | None:intergenic |
| TTGAGGCTGCTTATTCTCTA+GGG | 0.512196 | 7_4:-3851376 | Msa1135950:intron |
| AAGAAGCTGATAGAATTTCT+CGG | 0.512249 | 7_4:+3851636 | None:intergenic |
| AAAATCATCTACTTAGGAGA+TGG | 0.512607 | 7_4:-3850443 | Msa1135950:CDS |
| CTTCTTCACTAACATAACTT+GGG | 0.522722 | 7_4:+3851089 | None:intergenic |
| AGAGGATTCCAAAGCATGCT+AGG | 0.522882 | 7_4:+3851613 | None:intergenic |
| CATCTCAGTTGATTGCAAGA+TGG | 0.524133 | 7_4:-3850207 | Msa1135950:CDS |
| CTCTCTTTGAGCTTTAGACT+AGG | 0.537244 | 7_4:+3850404 | None:intergenic |
| GATTATCTAAAATCTTCTCA+TGG | 0.538879 | 7_4:-3851040 | Msa1135950:CDS |
| GACATAAAGGCACATGTACA+TGG | 0.547678 | 7_4:-3850320 | Msa1135950:CDS |
| CATGCTTTGGAATCCTCTCA+TGG | 0.547902 | 7_4:-3851608 | Msa1135950:intron |
| CAAGTTATGTTAGTGAAGAA+GGG | 0.557919 | 7_4:-3851087 | Msa1135950:CDS |
| TGCACATATTTGGTGGACAA+AGG | 0.560853 | 7_4:+3851011 | None:intergenic |
| TAAAGGCACATGTACATGGT+TGG | 0.564702 | 7_4:-3850316 | Msa1135950:CDS |
| TGACATACAGGGAAAGGTGA+TGG | 0.566260 | 7_4:-3850504 | Msa1135950:intron |
| ATCTACTTAGGAGATGGAAG+TGG | 0.574030 | 7_4:-3850437 | Msa1135950:CDS |
| ATTGCCTTGCACATATTTGG+TGG | 0.577663 | 7_4:+3851004 | None:intergenic |
| AAAGTAAAGAAGACCATGAG+AGG | 0.618460 | 7_4:+3851595 | None:intergenic |
| TCGCATTATCACTGCCATTG+AGG | 0.620838 | 7_4:-3851393 | Msa1135950:CDS |
| TTGTCCACCAAATATGTGCA+AGG | 0.634563 | 7_4:-3851008 | Msa1135950:intron |
| ATGAATGAACTTCATGCACA+AGG | 0.639690 | 7_4:-3851467 | Msa1135950:CDS |
| TTGTGTTCAGGTGTGAGCTG+AGG | 0.644223 | 7_4:-3851198 | Msa1135950:intron |
| ACATGGTTGGAGAGATGGAG+AGG | 0.648554 | 7_4:-3850303 | Msa1135950:CDS |
| TCTCAGTTGATTGCAAGATG+GGG | 0.664938 | 7_4:-3850205 | Msa1135950:CDS |
| GTTATGTTAGTGAAGAAGGG+AGG | 0.681207 | 7_4:-3851084 | Msa1135950:CDS |
| TCAATGGCAGTGATAATGCG+AGG | 0.688273 | 7_4:+3851395 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTAGAATCATTAAAATAA+AGG | + | chr7_4:3850340-3850359 | None:intergenic | 10.0% |
| !!! | ATAAAATTATTTCTTTAACT+AGG | + | chr7_4:3850394-3850413 | None:intergenic | 10.0% |
| !! | ATGAATATAATAGTATTATA+TGG | + | chr7_4:3850957-3850976 | None:intergenic | 10.0% |
| !! | TATTAGAATCATTAAAATAA+AGG | + | chr7_4:3850340-3850359 | None:intergenic | 10.0% |
| !!! | ATAAAATTATTTCTTTAACT+AGG | + | chr7_4:3850394-3850413 | None:intergenic | 10.0% |
| !! | ATGAATATAATAGTATTATA+TGG | + | chr7_4:3850957-3850976 | None:intergenic | 10.0% |
| !!! | TATTTGTCCTTAAATTTTAT+AGG | - | chr7_4:3850411-3850430 | Msa1135950:CDS | 15.0% |
| !!! | ATTTTGTCCTATAAAATTTA+AGG | + | chr7_4:3850421-3850440 | None:intergenic | 15.0% |
| !! | TAGTATGAGAATAATTTATA+CGG | - | chr7_4:3850603-3850622 | Msa1135950:intron | 15.0% |
| !! | TAAAAATTCAAATGACATAA+AGG | - | chr7_4:3851576-3851595 | Msa1135950:intron | 15.0% |
| !!! | TATTTGTCCTTAAATTTTAT+AGG | - | chr7_4:3850411-3850430 | Msa1135950:CDS | 15.0% |
| !!! | ATTTTGTCCTATAAAATTTA+AGG | + | chr7_4:3850421-3850440 | None:intergenic | 15.0% |
| !! | TAGTATGAGAATAATTTATA+CGG | - | chr7_4:3850603-3850622 | Msa1135950:intron | 15.0% |
| !! | TAAAAATTCAAATGACATAA+AGG | - | chr7_4:3851576-3851595 | Msa1135950:intron | 15.0% |
| !!! | AGCTTTTTGTACATTTATAA+TGG | - | chr7_4:3850166-3850185 | Msa1135950:CDS | 20.0% |
| !! | AAATTGTAGAAGTTCTTAAT+AGG | - | chr7_4:3850479-3850498 | Msa1135950:CDS | 20.0% |
| !! | TCATCAACAATATATAGAAA+CGG | + | chr7_4:3851050-3851069 | None:intergenic | 20.0% |
| !!! | TAAGATGTGATTTTATGTAT+AGG | + | chr7_4:3851327-3851346 | None:intergenic | 20.0% |
| !!! | AGCTTTTTGTACATTTATAA+TGG | - | chr7_4:3850166-3850185 | Msa1135950:CDS | 20.0% |
| !! | AAATTGTAGAAGTTCTTAAT+AGG | - | chr7_4:3850479-3850498 | Msa1135950:CDS | 20.0% |
| !! | TCATCAACAATATATAGAAA+CGG | + | chr7_4:3851050-3851069 | None:intergenic | 20.0% |
| !!! | TAAGATGTGATTTTATGTAT+AGG | + | chr7_4:3851327-3851346 | None:intergenic | 20.0% |
| !! | TTTTGTACATTTATAATGGC+TGG | - | chr7_4:3850170-3850189 | Msa1135950:CDS | 25.0% |
| !! | TTGAATGTGATAGTGATAAT+TGG | - | chr7_4:3850228-3850247 | Msa1135950:CDS | 25.0% |
| !! | TGAATGTGATAGTGATAATT+GGG | - | chr7_4:3850229-3850248 | Msa1135950:CDS | 25.0% |
| ! | AAGATGAAATATTTGTGTTC+AGG | - | chr7_4:3850699-3850718 | Msa1135950:intron | 25.0% |
| !!! | AAACAATTTTGAAGCATCAT+GGG | - | chr7_4:3850765-3850784 | Msa1135950:intron | 25.0% |
| !! | GATTTTAGATAATCATGGTA+GGG | + | chr7_4:3850863-3850882 | None:intergenic | 25.0% |
| !! | AGATTTTAGATAATCATGGT+AGG | + | chr7_4:3850864-3850883 | None:intergenic | 25.0% |
| !! | GAGAAGATTTTAGATAATCA+TGG | + | chr7_4:3850868-3850887 | None:intergenic | 25.0% |
| !! | GATTATCTAAAATCTTCTCA+TGG | - | chr7_4:3850869-3850888 | Msa1135950:intron | 25.0% |
| ! | ATGGTCATAAATAGATTTAG+AGG | + | chr7_4:3850938-3850957 | None:intergenic | 25.0% |
| ! | TAGAAACGGTGAATAAAATA+TGG | + | chr7_4:3851036-3851055 | None:intergenic | 25.0% |
| ! | GTCATATATGTCATAATCAA+AGG | - | chr7_4:3851202-3851221 | Msa1135950:intron | 25.0% |
| ! | AAGAAGAAAATCATCTACTT+AGG | - | chr7_4:3851460-3851479 | Msa1135950:CDS | 25.0% |
| ! | ATCATCAACAAAGCTAATAT+TGG | - | chr7_4:3851652-3851671 | Msa1135950:CDS | 25.0% |
| ! | AACAAAGCTAATATTGGTAA+AGG | - | chr7_4:3851658-3851677 | Msa1135950:CDS | 25.0% |
| ! | ACAAAGCTAATATTGGTAAA+GGG | - | chr7_4:3851659-3851678 | Msa1135950:CDS | 25.0% |
| !! | TTTTGTACATTTATAATGGC+TGG | - | chr7_4:3850170-3850189 | Msa1135950:CDS | 25.0% |
| !! | TTGAATGTGATAGTGATAAT+TGG | - | chr7_4:3850228-3850247 | Msa1135950:CDS | 25.0% |
| !! | TGAATGTGATAGTGATAATT+GGG | - | chr7_4:3850229-3850248 | Msa1135950:CDS | 25.0% |
| ! | AAGATGAAATATTTGTGTTC+AGG | - | chr7_4:3850699-3850718 | Msa1135950:intron | 25.0% |
| !!! | AAACAATTTTGAAGCATCAT+GGG | - | chr7_4:3850765-3850784 | Msa1135950:intron | 25.0% |
| !! | GATTTTAGATAATCATGGTA+GGG | + | chr7_4:3850863-3850882 | None:intergenic | 25.0% |
| !! | AGATTTTAGATAATCATGGT+AGG | + | chr7_4:3850864-3850883 | None:intergenic | 25.0% |
| !! | GAGAAGATTTTAGATAATCA+TGG | + | chr7_4:3850868-3850887 | None:intergenic | 25.0% |
| !! | GATTATCTAAAATCTTCTCA+TGG | - | chr7_4:3850869-3850888 | Msa1135950:intron | 25.0% |
| ! | ATGGTCATAAATAGATTTAG+AGG | + | chr7_4:3850938-3850957 | None:intergenic | 25.0% |
| ! | TAGAAACGGTGAATAAAATA+TGG | + | chr7_4:3851036-3851055 | None:intergenic | 25.0% |
| ! | GTCATATATGTCATAATCAA+AGG | - | chr7_4:3851202-3851221 | Msa1135950:intron | 25.0% |
| ! | AAGAAGAAAATCATCTACTT+AGG | - | chr7_4:3851460-3851479 | Msa1135950:CDS | 25.0% |
| ! | ATCATCAACAAAGCTAATAT+TGG | - | chr7_4:3851652-3851671 | Msa1135950:CDS | 25.0% |
| ! | AACAAAGCTAATATTGGTAA+AGG | - | chr7_4:3851658-3851677 | Msa1135950:CDS | 25.0% |
| ! | ACAAAGCTAATATTGGTAAA+GGG | - | chr7_4:3851659-3851678 | Msa1135950:CDS | 25.0% |
| AAGAAGCTGATAGAATTTCT+CGG | + | chr7_4:3850276-3850295 | None:intergenic | 30.0% | |
| !!! | GAAACAATTTTGAAGCATCA+TGG | - | chr7_4:3850764-3850783 | Msa1135950:intron | 30.0% |
| !!! | AACAATTTTGAAGCATCATG+GGG | - | chr7_4:3850766-3850785 | Msa1135950:intron | 30.0% |
| CTTCTTCACTAACATAACTT+GGG | + | chr7_4:3850823-3850842 | None:intergenic | 30.0% | |
| CAAGTTATGTTAGTGAAGAA+GGG | - | chr7_4:3850822-3850841 | Msa1135950:intron | 30.0% | |
| !! | CAAAATTCACTTGATGATGA+AGG | - | chr7_4:3851436-3851455 | Msa1135950:CDS | 30.0% |
| AAAATCATCTACTTAGGAGA+TGG | - | chr7_4:3851466-3851485 | Msa1135950:CDS | 30.0% | |
| ! | CAATCAACTGAGATGATTTT+TGG | + | chr7_4:3851697-3851716 | None:intergenic | 30.0% |
| AAGAAGCTGATAGAATTTCT+CGG | + | chr7_4:3850276-3850295 | None:intergenic | 30.0% | |
| !!! | GAAACAATTTTGAAGCATCA+TGG | - | chr7_4:3850764-3850783 | Msa1135950:intron | 30.0% |
| !!! | AACAATTTTGAAGCATCATG+GGG | - | chr7_4:3850766-3850785 | Msa1135950:intron | 30.0% |
| CTTCTTCACTAACATAACTT+GGG | + | chr7_4:3850823-3850842 | None:intergenic | 30.0% | |
| CAAGTTATGTTAGTGAAGAA+GGG | - | chr7_4:3850822-3850841 | Msa1135950:intron | 30.0% | |
| !! | CAAAATTCACTTGATGATGA+AGG | - | chr7_4:3851436-3851455 | Msa1135950:CDS | 30.0% |
| AAAATCATCTACTTAGGAGA+TGG | - | chr7_4:3851466-3851485 | Msa1135950:CDS | 30.0% | |
| ! | CAATCAACTGAGATGATTTT+TGG | + | chr7_4:3851697-3851716 | None:intergenic | 30.0% |
| AATTGGGTTCTTGATGAGTT+TGG | - | chr7_4:3850245-3850264 | Msa1135950:CDS | 35.0% | |
| AAAGTAAAGAAGACCATGAG+AGG | + | chr7_4:3850317-3850336 | None:intergenic | 35.0% | |
| ATGAATGAACTTCATGCACA+AGG | - | chr7_4:3850442-3850461 | Msa1135950:CDS | 35.0% | |
| TCATGCACAAGGAAAAACAA+TGG | - | chr7_4:3850453-3850472 | Msa1135950:CDS | 35.0% | |
| CCTTCTTCACTAACATAACT+TGG | + | chr7_4:3850824-3850843 | None:intergenic | 35.0% | |
| CCAAGTTATGTTAGTGAAGA+AGG | - | chr7_4:3850821-3850840 | Msa1135950:intron | 35.0% | |
| !! | TTGTTGATGACTAATGAACG+TGG | - | chr7_4:3851060-3851079 | Msa1135950:CDS | 35.0% |
| GAATTCATGCCTACACAAAA+AGG | - | chr7_4:3851224-3851243 | Msa1135950:intron | 35.0% | |
| ! | ACGATTTTGCCTTTTTGTGT+AGG | + | chr7_4:3851236-3851255 | None:intergenic | 35.0% |
| CTCAATGCAAAGTTCATTCT+AGG | + | chr7_4:3851544-3851563 | None:intergenic | 35.0% | |
| ATTGGTAAAGGGAACATTGT+TGG | - | chr7_4:3851670-3851689 | Msa1135950:CDS | 35.0% | |
| ATCTCAGTTGATTGCAAGAT+GGG | - | chr7_4:3851703-3851722 | Msa1135950:CDS | 35.0% | |
| AATTGGGTTCTTGATGAGTT+TGG | - | chr7_4:3850245-3850264 | Msa1135950:CDS | 35.0% | |
| AAAGTAAAGAAGACCATGAG+AGG | + | chr7_4:3850317-3850336 | None:intergenic | 35.0% | |
| ATGAATGAACTTCATGCACA+AGG | - | chr7_4:3850442-3850461 | Msa1135950:CDS | 35.0% | |
| TCATGCACAAGGAAAAACAA+TGG | - | chr7_4:3850453-3850472 | Msa1135950:CDS | 35.0% | |
| CCTTCTTCACTAACATAACT+TGG | + | chr7_4:3850824-3850843 | None:intergenic | 35.0% | |
| CCAAGTTATGTTAGTGAAGA+AGG | - | chr7_4:3850821-3850840 | Msa1135950:intron | 35.0% | |
| !! | TTGTTGATGACTAATGAACG+TGG | - | chr7_4:3851060-3851079 | Msa1135950:CDS | 35.0% |
| GAATTCATGCCTACACAAAA+AGG | - | chr7_4:3851224-3851243 | Msa1135950:intron | 35.0% | |
| ! | ACGATTTTGCCTTTTTGTGT+AGG | + | chr7_4:3851236-3851255 | None:intergenic | 35.0% |
| CTCAATGCAAAGTTCATTCT+AGG | + | chr7_4:3851544-3851563 | None:intergenic | 35.0% | |
| ATTGGTAAAGGGAACATTGT+TGG | - | chr7_4:3851670-3851689 | Msa1135950:CDS | 35.0% | |
| ATCTCAGTTGATTGCAAGAT+GGG | - | chr7_4:3851703-3851722 | Msa1135950:CDS | 35.0% | |
| ! | GTGATAATGCGAGGATGAAT+TGG | + | chr7_4:3850508-3850527 | None:intergenic | 40.0% |
| TAGAGAATAAGCAGCCTCAA+TGG | + | chr7_4:3850533-3850552 | None:intergenic | 40.0% | |
| ATTGAGGCTGCTTATTCTCT+AGG | - | chr7_4:3850532-3850551 | Msa1135950:intron | 40.0% | |
| TTGAGGCTGCTTATTCTCTA+GGG | - | chr7_4:3850533-3850552 | Msa1135950:intron | 40.0% | |
| GTTATGTTAGTGAAGAAGGG+AGG | - | chr7_4:3850825-3850844 | Msa1135950:intron | 40.0% | |
| ! | TGCACATATTTGGTGGACAA+AGG | + | chr7_4:3850901-3850920 | None:intergenic | 40.0% |
| TTGTCCACCAAATATGTGCA+AGG | - | chr7_4:3850901-3850920 | Msa1135950:intron | 40.0% | |
| ATTGCCTTGCACATATTTGG+TGG | + | chr7_4:3850908-3850927 | None:intergenic | 40.0% | |
| GCAATTGCCTTGCACATATT+TGG | + | chr7_4:3850911-3850930 | None:intergenic | 40.0% | |
| ! | TTGACCAGATTTTCCTCCAA+AGG | + | chr7_4:3851090-3851109 | None:intergenic | 40.0% |
| TTTCCCTGTATGTCATTCGA+GGG | + | chr7_4:3851400-3851419 | None:intergenic | 40.0% | |
| ATCTACTTAGGAGATGGAAG+TGG | - | chr7_4:3851472-3851491 | Msa1135950:CDS | 40.0% | |
| !! | CTCTCTTTGAGCTTTAGACT+AGG | + | chr7_4:3851508-3851527 | None:intergenic | 40.0% |
| ! | GACATAAAGGCACATGTACA+TGG | - | chr7_4:3851589-3851608 | Msa1135950:intron | 40.0% |
| ! | TAAAGGCACATGTACATGGT+TGG | - | chr7_4:3851593-3851612 | Msa1135950:intron | 40.0% |
| CATCTCAGTTGATTGCAAGA+TGG | - | chr7_4:3851702-3851721 | Msa1135950:CDS | 40.0% | |
| TCTCAGTTGATTGCAAGATG+GGG | - | chr7_4:3851704-3851723 | Msa1135950:CDS | 40.0% | |
| TAGGAACTGATAGAGCTTCA+GGG | + | chr7_4:3851759-3851778 | None:intergenic | 40.0% | |
| TTAGGAACTGATAGAGCTTC+AGG | + | chr7_4:3851760-3851779 | None:intergenic | 40.0% | |
| ! | GTGATAATGCGAGGATGAAT+TGG | + | chr7_4:3850508-3850527 | None:intergenic | 40.0% |
| TAGAGAATAAGCAGCCTCAA+TGG | + | chr7_4:3850533-3850552 | None:intergenic | 40.0% | |
| ATTGAGGCTGCTTATTCTCT+AGG | - | chr7_4:3850532-3850551 | Msa1135950:intron | 40.0% | |
| TTGAGGCTGCTTATTCTCTA+GGG | - | chr7_4:3850533-3850552 | Msa1135950:intron | 40.0% | |
| GTTATGTTAGTGAAGAAGGG+AGG | - | chr7_4:3850825-3850844 | Msa1135950:intron | 40.0% | |
| ! | TGCACATATTTGGTGGACAA+AGG | + | chr7_4:3850901-3850920 | None:intergenic | 40.0% |
| TTGTCCACCAAATATGTGCA+AGG | - | chr7_4:3850901-3850920 | Msa1135950:intron | 40.0% | |
| ATTGCCTTGCACATATTTGG+TGG | + | chr7_4:3850908-3850927 | None:intergenic | 40.0% | |
| GCAATTGCCTTGCACATATT+TGG | + | chr7_4:3850911-3850930 | None:intergenic | 40.0% | |
| ! | TTGACCAGATTTTCCTCCAA+AGG | + | chr7_4:3851090-3851109 | None:intergenic | 40.0% |
| TTTCCCTGTATGTCATTCGA+GGG | + | chr7_4:3851400-3851419 | None:intergenic | 40.0% | |
| ATCTACTTAGGAGATGGAAG+TGG | - | chr7_4:3851472-3851491 | Msa1135950:CDS | 40.0% | |
| !! | CTCTCTTTGAGCTTTAGACT+AGG | + | chr7_4:3851508-3851527 | None:intergenic | 40.0% |
| ! | GACATAAAGGCACATGTACA+TGG | - | chr7_4:3851589-3851608 | Msa1135950:intron | 40.0% |
| ! | TAAAGGCACATGTACATGGT+TGG | - | chr7_4:3851593-3851612 | Msa1135950:intron | 40.0% |
| CATCTCAGTTGATTGCAAGA+TGG | - | chr7_4:3851702-3851721 | Msa1135950:CDS | 40.0% | |
| TCTCAGTTGATTGCAAGATG+GGG | - | chr7_4:3851704-3851723 | Msa1135950:CDS | 40.0% | |
| TAGGAACTGATAGAGCTTCA+GGG | + | chr7_4:3851759-3851778 | None:intergenic | 40.0% | |
| TTAGGAACTGATAGAGCTTC+AGG | + | chr7_4:3851760-3851779 | None:intergenic | 40.0% | |
| AGCTTCTTCCTAGCATGCTT+TGG | - | chr7_4:3850288-3850307 | Msa1135950:CDS | 45.0% | |
| AGAGGATTCCAAAGCATGCT+AGG | + | chr7_4:3850299-3850318 | None:intergenic | 45.0% | |
| !! | CATGCTTTGGAATCCTCTCA+TGG | - | chr7_4:3850301-3850320 | Msa1135950:CDS | 45.0% |
| ! | TCAATGGCAGTGATAATGCG+AGG | + | chr7_4:3850517-3850536 | None:intergenic | 45.0% |
| TCGCATTATCACTGCCATTG+AGG | - | chr7_4:3850516-3850535 | Msa1135950:intron | 45.0% | |
| TAATGAACGTGGCATGCCTT+TGG | - | chr7_4:3851071-3851090 | Msa1135950:CDS | 45.0% | |
| ! | CATGCCTTTGGAGGAAAATC+TGG | - | chr7_4:3851083-3851102 | Msa1135950:CDS | 45.0% |
| TTCCCTGTATGTCATTCGAG+GGG | + | chr7_4:3851399-3851418 | None:intergenic | 45.0% | |
| CTTTCCCTGTATGTCATTCG+AGG | + | chr7_4:3851401-3851420 | None:intergenic | 45.0% | |
| CTCGAATGACATACAGGGAA+AGG | - | chr7_4:3851399-3851418 | Msa1135950:CDS | 45.0% | |
| TGACATACAGGGAAAGGTGA+TGG | - | chr7_4:3851405-3851424 | Msa1135950:CDS | 45.0% | |
| CATGTACATGGTTGGAGAGA+TGG | - | chr7_4:3851601-3851620 | Msa1135950:intron | 45.0% | |
| AGCTTCTTCCTAGCATGCTT+TGG | - | chr7_4:3850288-3850307 | Msa1135950:CDS | 45.0% | |
| AGAGGATTCCAAAGCATGCT+AGG | + | chr7_4:3850299-3850318 | None:intergenic | 45.0% | |
| !! | CATGCTTTGGAATCCTCTCA+TGG | - | chr7_4:3850301-3850320 | Msa1135950:CDS | 45.0% |
| ! | TCAATGGCAGTGATAATGCG+AGG | + | chr7_4:3850517-3850536 | None:intergenic | 45.0% |
| TCGCATTATCACTGCCATTG+AGG | - | chr7_4:3850516-3850535 | Msa1135950:intron | 45.0% | |
| TAATGAACGTGGCATGCCTT+TGG | - | chr7_4:3851071-3851090 | Msa1135950:CDS | 45.0% | |
| ! | CATGCCTTTGGAGGAAAATC+TGG | - | chr7_4:3851083-3851102 | Msa1135950:CDS | 45.0% |
| TTCCCTGTATGTCATTCGAG+GGG | + | chr7_4:3851399-3851418 | None:intergenic | 45.0% | |
| CTTTCCCTGTATGTCATTCG+AGG | + | chr7_4:3851401-3851420 | None:intergenic | 45.0% | |
| CTCGAATGACATACAGGGAA+AGG | - | chr7_4:3851399-3851418 | Msa1135950:CDS | 45.0% | |
| TGACATACAGGGAAAGGTGA+TGG | - | chr7_4:3851405-3851424 | Msa1135950:CDS | 45.0% | |
| CATGTACATGGTTGGAGAGA+TGG | - | chr7_4:3851601-3851620 | Msa1135950:intron | 45.0% | |
| TTGTGTTCAGGTGTGAGCTG+AGG | - | chr7_4:3850711-3850730 | Msa1135950:intron | 50.0% | |
| TCCCCCTCGAATGACATACA+GGG | - | chr7_4:3851394-3851413 | Msa1135950:CDS | 50.0% | |
| TCCCTGTATGTCATTCGAGG+GGG | + | chr7_4:3851398-3851417 | None:intergenic | 50.0% | |
| ACATGGTTGGAGAGATGGAG+AGG | - | chr7_4:3851606-3851625 | Msa1135950:intron | 50.0% | |
| TTGTGTTCAGGTGTGAGCTG+AGG | - | chr7_4:3850711-3850730 | Msa1135950:intron | 50.0% | |
| TCCCCCTCGAATGACATACA+GGG | - | chr7_4:3851394-3851413 | Msa1135950:CDS | 50.0% | |
| TCCCTGTATGTCATTCGAGG+GGG | + | chr7_4:3851398-3851417 | None:intergenic | 50.0% | |
| ACATGGTTGGAGAGATGGAG+AGG | - | chr7_4:3851606-3851625 | Msa1135950:intron | 50.0% | |
| TGAACGTGGCATGCCTTTGG+AGG | - | chr7_4:3851074-3851093 | Msa1135950:CDS | 55.0% | |
| CTCCCCCTCGAATGACATAC+AGG | - | chr7_4:3851393-3851412 | Msa1135950:CDS | 55.0% | |
| TGAACGTGGCATGCCTTTGG+AGG | - | chr7_4:3851074-3851093 | Msa1135950:CDS | 55.0% | |
| CTCCCCCTCGAATGACATAC+AGG | - | chr7_4:3851393-3851412 | Msa1135950:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 3850148 | 3851783 | 3850148 | ID=Msa1135950;Name=Msa1135950 |
| chr7_4 | mRNA | 3850148 | 3851783 | 3850148 | ID=Msa1135950-mRNA-1;Parent=Msa1135950;Name=Msa1135950-mRNA-1;_AED=0.03;_eAED=0.03;_QI=37|0.33|0.25|1|1|1|4|0|276 |
| chr7_4 | exon | 3850148 | 3850516 | 3850148 | ID=Msa1135950-mRNA-1:exon:1070;Parent=Msa1135950-mRNA-1 |
| chr7_4 | exon | 3851009 | 3851210 | 3851009 | ID=Msa1135950-mRNA-1:exon:1069;Parent=Msa1135950-mRNA-1 |
| chr7_4 | exon | 3851377 | 3851498 | 3851377 | ID=Msa1135950-mRNA-1:exon:1068;Parent=Msa1135950-mRNA-1 |
| chr7_4 | exon | 3851609 | 3851783 | 3851609 | ID=Msa1135950-mRNA-1:exon:1067;Parent=Msa1135950-mRNA-1 |
| chr7_4 | five_prime_UTR | 3851747 | 3851783 | 3851747 | ID=Msa1135950-mRNA-1:five_prime_utr;Parent=Msa1135950-mRNA-1 |
| chr7_4 | CDS | 3851609 | 3851746 | 3851609 | ID=Msa1135950-mRNA-1:cds;Parent=Msa1135950-mRNA-1 |
| chr7_4 | CDS | 3851377 | 3851498 | 3851377 | ID=Msa1135950-mRNA-1:cds;Parent=Msa1135950-mRNA-1 |
| chr7_4 | CDS | 3851009 | 3851210 | 3851009 | ID=Msa1135950-mRNA-1:cds;Parent=Msa1135950-mRNA-1 |
| chr7_4 | CDS | 3850148 | 3850516 | 3850148 | ID=Msa1135950-mRNA-1:cds;Parent=Msa1135950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
