AlfalfaGEDB | Msa1006880

M. sativa cultivar zhongmu-4 / Msa1006880

KEGG: -
GO: GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009739 GO:0009987 GO:0010033 GO:0016143 GO:0019748 GO:0019757 GO:0019760 GO:0033993 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0046983 GO:0050896 GO:0071704 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700
PFAM: PF04770.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1006880	XP_003621193.1	92.638	326	18	4	17	340	20	341	5.18e-179	509

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1006880	sp\|Q9LXG0\|ZHD8_ARATH	49.446	271	102	9	22	284	3	246	2.81e-69	220

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1006880	A2Q1B8	92.638	326	18	4	17	340	20	341	2.47e-179	509

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TFs/TRs:

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Gene ID	Type	Classification
Msa1006880	TF	zf-HD

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0206130	Msa1006880	0.830540	2.772133e-55	-8.615850e-47
Msa0358710	Msa1006880	0.812003	5.275374e-51	-8.615850e-47
Msa0404870	Msa1006880	0.808760	2.643742e-50	-8.615850e-47
Msa1006880	Msa1135850	0.916314	2.067092e-85	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1006880	MtrunA17_Chr7g0217231	92.638	326	18	4	17	340	20	341	0.0	509
Msa1006880	MtrunA17_Chr6g0453231	62.835	261	80	6	35	286	36	288	7.30e-79	244
Msa1006880	MtrunA17_Chr1g0188441	44.828	203	86	6	84	282	6	186	1.76e-52	171
Msa1006880	MtrunA17_Chr5g0404271	43.062	209	100	7	85	283	97	296	3.27e-48	164
Msa1006880	MtrunA17_Chr3g0133181	43.478	207	95	5	84	280	77	271	1.09e-47	162
Msa1006880	MtrunA17_Chr5g0412501	44.811	212	83	7	87	282	78	271	1.07e-46	159
Msa1006880	MtrunA17_Chr4g0076821	40.928	237	98	9	87	283	113	347	6.31e-45	157
Msa1006880	MtrunA17_Chr5g0427051	39.655	232	104	6	76	282	47	267	6.83e-45	154
Msa1006880	MtrunA17_Chr2g0315941	38.249	217	96	6	87	282	68	267	6.13e-40	141
Msa1006880	MtrunA17_Chr6g0479901	38.860	193	66	5	87	278	19	160	1.66e-37	132

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1006880	AT5G15210.1	49.446	271	102	9	22	284	3	246	2.86e-70	220
Msa1006880	AT1G69600.1	53.659	205	67	5	85	279	29	215	2.89e-65	206
Msa1006880	AT3G28920.1	49.829	293	98	9	32	298	12	281	8.25e-63	202
Msa1006880	AT5G39760.1	47.778	270	108	7	32	287	17	267	1.28e-55	184
Msa1006880	AT1G14440.1	43.363	226	105	5	82	298	85	296	8.67e-53	177
Msa1006880	AT1G14440.2	43.363	226	105	5	82	298	85	296	8.67e-53	177
Msa1006880	AT2G02540.2	42.152	223	108	6	84	294	84	297	5.87e-51	172
Msa1006880	AT2G02540.1	42.152	223	108	6	84	294	84	297	5.87e-51	172
Msa1006880	AT4G24660.1	45.455	198	83	4	85	282	47	219	3.36e-50	167
Msa1006880	AT4G24660.2	45.641	195	81	4	85	279	47	216	3.10e-49	165

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Find 94 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAATGAGAATATTAATGA+TGG	0.527160	7_1:-5873490	Msa1006880:CDS
AACCATGCAGCAAACCTAGG+TGG	0.685477	7_1:-5874072	Msa1006880:CDS
AAGAAGCATGTGAGGGGCGG+AGG	0.375917	7_1:+5873792	None:intergenic
AATCATTATCAGAATGAAGG+TGG	0.598316	7_1:-5873397	Msa1006880:CDS
AATTTGCTGAGAAAGTTGGG+TGG	0.726025	7_1:-5873639	Msa1006880:CDS
ACAATTCTAGAAAGCGTTTC+AGG	0.216225	7_1:-5873699	Msa1006880:CDS
ACATGAGTTGTGGTGGAAAG+TGG	0.548946	7_1:+5873922	None:intergenic
ACATTCTTTGTAGGTTATGG+TGG	0.457146	7_1:+5874101	None:intergenic
AGAAGCATGTGAGGGGCGGA+GGG	0.495592	7_1:+5873793	None:intergenic
AGAGAGCAAGAAGCATGTGA+GGG	0.597359	7_1:+5873785	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGTTCTGGTGATTTAGTTA+AGG	+	chr7_1:5873436-5873455	None:intergenic	30.0%
TTGAGAACACCATTTGAAAA+AGG	+	chr7_1:5873516-5873535	None:intergenic	30.0%
ATATTCAATGACATGAGTTG+TGG	+	chr7_1:5873787-5873806	None:intergenic	30.0%
CACAATCATTATCAGAATGA+AGG	-	chr7_1:5874296-5874315	Msa1006880:CDS	30.0%
AATCATTATCAGAATGAAGG+TGG	-	chr7_1:5874299-5874318	Msa1006880:CDS	30.0%
TTGTTCTGGTGATTTAGTTA+AGG	+	chr7_1:5873436-5873455	None:intergenic	30.0%
TTGAGAACACCATTTGAAAA+AGG	+	chr7_1:5873516-5873535	None:intergenic	30.0%
ATATTCAATGACATGAGTTG+TGG	+	chr7_1:5873787-5873806	None:intergenic	30.0%
CACAATCATTATCAGAATGA+AGG	-	chr7_1:5874296-5874315	Msa1006880:CDS	30.0%
AATCATTATCAGAATGAAGG+TGG	-	chr7_1:5874299-5874318	Msa1006880:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	5873348	5874370	5873348	ID=Msa1006880;Name=Msa1006880
chr7_1	mRNA	5873348	5874370	5873348	ID=Msa1006880-mRNA-1;Parent=Msa1006880;Name=Msa1006880-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|340
chr7_1	exon	5873348	5874370	5873348	ID=Msa1006880-mRNA-1:exon:1846;Parent=Msa1006880-mRNA-1
chr7_1	CDS	5873348	5874370	5873348	ID=Msa1006880-mRNA-1:cds;Parent=Msa1006880-mRNA-1

Gene Sequence

>Msa1006880

ATGGACATAACCTTAACCCCAACTCCAACACCAACACCACCACCAACATCAATAGCACCAACCATATCAACAACCTCAACAACAACCTTAACTAAATCACCAGAACAACATCATGAAACTGAAACACCCACAAAATTCCCAACCTCAACAACCCCAAAAATCTCACCTTTTTCAAATGGTGTTCTCAAACGTTTCCACCACCACCACCACCACTTCAACCACCACAACAACACCAACAACCATCAACCCACCATAACCTACAAAGAATGTCTCAAAAACCATGCAGCAAACCTAGGTGGTCATGCCCTAGATGGTTGTGGTGAATTCATGACATCACCCACAGCAACACCAACCGACCCAACATCCTTAAAATGTGCTGCTTGTGGCTGCCACCGTAACTTCCACCGCCGTGAACCTGAAGAACCACCACTTTCCACCACAACTCATGTCATTGAATATCAACCTCACCACCGTCATCAACCACTTCCACCACCACCCTTTTCCCACCGGAGCCCAAATTCCTCCTCACCACCACCGATCTCCTCCTCTTACTACCCCTCCGCCCCTCACATGCTTCTTGCTCTCTCCGCCGCCTTACCGGAAAACGTTGCAGCTCCAAACCAAACCATGTTGATGAATTCTCACTCTAACAATTCTAGAAAGCGTTTCAGGACAAAGTTTACACAAGATCAGAAAGATAAGATGCTGAAATTTGCTGAGAAAGTTGGGTGGAAGATGCAGAAAAAAGATGATGAATTTGTTCATGAGTTTTGTAATGAGATTGGTGTTGATCGTAGTGTTCTTAAGGTTTGGATGCATAACAACAAGAACACTTTAGCCAAACGAGAAAACCTTAACAACAATGAGAATATTAATGATGGTGTTAAGAGTTTTCAGCTACCTCTTGAAGATGAAGAACACAAGAATGTTGAGATTCATGGTCTTAATCACAATCATTATCAGAATGAAGGTGGAGTTGTTGGAGTAACTGTTCGTGCTAATGGTTCATCATCTTCTTCTTAA

Protein sequence

>Msa1006880

MDITLTPTPTPTPPPTSIAPTISTTSTTTLTKSPEQHHETETPTKFPTSTTPKISPFSNGVLKRFHHHHHHFNHHNNTNNHQPTITYKECLKNHAANLGGHALDGCGEFMTSPTATPTDPTSLKCAACGCHRNFHRREPEEPPLSTTTHVIEYQPHHRHQPLPPPPFSHRSPNSSSPPPISSSYYPSAPHMLLALSAALPENVAAPNQTMLMNSHSNNSRKRFRTKFTQDQKDKMLKFAEKVGWKMQKKDDEFVHEFCNEIGVDRSVLKVWMHNNKNTLAKRENLNNNENINDGVKSFQLPLEDEEHKNVEIHGLNHNHYQNEGGVVGVTVRANGSSSSS*