AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0404870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0404870 MtrunA17_Chr3g0095391 95.551 472 17 1 1 472 1 468 0.0 928
Msa0404870 MtrunA17_Chr1g0182791 32.200 559 251 22 1 475 1 515 4.10e-51 182
Msa0404870 MtrunA17_Chr7g0262691 44.398 241 96 7 262 468 202 438 1.14e-41 155
Msa0404870 MtrunA17_Chr1g0193321 58.333 144 53 4 253 391 402 543 3.22e-35 140
Msa0404870 MtrunA17_Chr7g0271251 35.762 302 138 10 152 405 245 538 1.03e-28 120
Msa0404870 MtrunA17_Chr1g0153241 58.000 100 38 2 291 388 65 162 4.71e-27 110
Msa0404870 MtrunA17_Chr7g0270871 49.107 112 49 3 287 390 173 284 2.87e-23 101
Msa0404870 MtrunA17_Chr5g0402031 68.571 70 20 1 322 391 114 181 4.11e-22 97.8
Msa0404870 MtrunA17_Chr3g0095411 97.619 42 1 0 474 515 1 42 5.39e-21 85.9
Msa0404870 MtrunA17_Chr7g0231461 45.600 125 55 4 256 375 243 359 3.89e-20 93.6
Msa0404870 MtrunA17_Chr4g0074161 57.143 63 27 0 315 377 208 270 2.65e-17 84.0
Msa0404870 MtrunA17_Chr1g0190731 53.968 63 29 0 315 377 195 257 1.08e-15 78.6
Msa0404870 MtrunA17_Chr5g0393721 44.304 79 37 2 308 379 217 295 8.89e-14 72.4
Msa0404870 MtrunA17_Chr1g0207311 37.500 88 45 2 300 377 178 265 1.63e-12 68.2
Msa0404870 MtrunA17_Chr1g0152131 39.450 109 61 3 270 377 221 325 4.18e-12 68.2
Msa0404870 MtrunA17_Chr3g0131771 47.945 73 36 2 315 385 149 221 4.77e-12 67.4
Msa0404870 MtrunA17_Chr3g0134741 34.694 98 51 3 315 407 231 320 6.33e-12 67.0
Msa0404870 MtrunA17_Chr5g0421111 51.562 64 30 1 315 377 367 430 6.37e-12 68.2
Msa0404870 MtrunA17_Chr6g0484271 33.333 153 79 5 233 375 79 218 1.15e-11 65.5
Msa0404870 MtrunA17_Chr7g0234761 50.000 64 31 1 315 377 319 382 1.22e-11 67.0
Msa0404870 MtrunA17_Chr3g0144641 50.000 64 31 1 315 377 193 256 1.64e-11 66.2
Msa0404870 MtrunA17_Chr1g0152651 44.118 68 33 1 315 377 276 343 1.84e-11 65.9
Msa0404870 MtrunA17_Chr8g0385911 35.000 120 70 5 315 432 147 260 1.90e-11 65.5
Msa0404870 MtrunA17_Chr8g0339091 50.000 64 31 1 315 377 293 356 2.17e-11 66.2
Msa0404870 MtrunA17_Chr1g0174161 31.132 106 71 2 315 418 162 267 2.97e-11 64.7
Msa0404870 MtrunA17_Chr8g0365941 50.000 64 31 1 315 377 307 370 3.39e-11 65.5
Msa0404870 MtrunA17_Chr8g0363921 46.875 64 33 1 315 377 153 216 5.62e-11 63.5
Msa0404870 MtrunA17_Chr4g0035101 48.438 64 32 1 315 377 145 208 7.55e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0404870 AT2G43010.2 35.388 503 228 18 8 498 6 423 1.47e-59 203
Msa0404870 AT2G43010.1 35.248 505 228 19 8 498 6 425 1.44e-57 198
Msa0404870 AT2G43010.3 35.248 505 228 19 8 498 13 432 1.88e-57 197
Msa0404870 AT2G43010.5 35.446 505 227 20 8 498 48 467 4.23e-57 197
Msa0404870 AT2G43010.4 35.368 475 212 17 8 472 6 395 2.14e-54 189
Msa0404870 AT2G20180.4 36.842 437 193 17 1 410 1 381 8.41e-45 164
Msa0404870 AT2G20180.6 36.842 437 193 17 1 410 1 381 8.41e-45 164
Msa0404870 AT2G20180.2 36.842 437 193 17 1 410 1 381 8.41e-45 164
Msa0404870 AT2G20180.3 36.842 437 193 17 1 410 1 381 8.41e-45 164
Msa0404870 AT3G59060.3 44.144 333 115 14 195 497 146 437 8.70e-45 164
Msa0404870 AT3G59060.2 44.144 333 115 14 195 497 146 437 8.70e-45 164
Msa0404870 AT3G59060.4 44.144 333 115 14 195 497 146 437 8.70e-45 164
Msa0404870 AT3G59060.1 44.411 331 115 14 195 497 146 435 1.79e-44 163
Msa0404870 AT2G20180.8 35.176 398 181 16 1 377 1 342 5.11e-39 145
Msa0404870 AT2G20180.7 38.352 352 147 13 74 410 14 310 9.09e-38 144
Msa0404870 AT2G20180.1 38.352 352 147 13 74 410 14 310 9.09e-38 144
Msa0404870 AT2G20180.5 38.352 352 147 13 74 410 14 310 9.09e-38 144
Msa0404870 AT1G09530.3 33.256 430 204 20 19 392 18 420 4.03e-33 132
Msa0404870 AT1G09530.2 33.256 430 204 20 19 392 18 420 4.03e-33 132
Msa0404870 AT1G09530.5 33.256 430 204 20 19 392 18 420 4.03e-33 132
Msa0404870 AT1G09530.1 33.256 430 204 20 19 392 18 420 4.03e-33 132
Msa0404870 AT1G09530.4 33.256 430 204 20 19 392 18 420 4.03e-33 132
Msa0404870 AT1G09530.6 33.256 430 204 20 19 392 18 420 4.03e-33 132
Msa0404870 AT4G28800.1 28.753 473 221 17 27 463 19 411 3.85e-28 117
Msa0404870 AT4G28800.2 28.541 473 216 18 27 463 31 417 2.31e-26 112
Msa0404870 AT5G67110.1 48.529 136 48 3 254 387 48 163 3.11e-26 106
Msa0404870 AT4G28790.1 28.993 407 217 15 20 408 18 370 5.22e-25 107
Msa0404870 AT4G28815.2 40.217 184 75 8 301 473 53 212 5.60e-25 103
Msa0404870 AT4G36930.1 73.611 72 17 1 319 388 197 268 6.12e-25 107
Msa0404870 AT4G28815.1 42.391 184 71 10 301 473 129 288 1.38e-24 104
Msa0404870 AT2G46970.2 41.379 174 81 7 254 414 133 298 3.00e-24 105
Msa0404870 AT2G46970.3 41.379 174 81 7 254 414 142 307 3.61e-24 105
Msa0404870 AT2G46970.1 41.520 171 79 7 257 414 167 329 4.46e-24 105
Msa0404870 AT4G00050.2 53.271 107 39 3 273 375 68 167 2.37e-22 97.8
Msa0404870 AT4G00050.3 53.271 107 39 3 273 375 170 269 6.29e-22 98.2
Msa0404870 AT4G00050.1 53.271 107 39 3 273 375 170 269 6.86e-22 98.2
Msa0404870 AT2G24260.2 58.730 63 26 0 315 377 37 99 1.12e-18 86.3
Msa0404870 AT2G24260.1 58.730 63 26 0 315 377 140 202 4.93e-18 86.3
Msa0404870 AT4G28790.2 27.446 368 199 12 20 373 18 331 5.02e-18 85.9
Msa0404870 AT5G58010.1 54.054 74 31 1 304 377 93 163 6.11e-18 85.1
Msa0404870 AT4G30980.1 57.143 63 27 0 315 377 132 194 1.26e-17 84.3
Msa0404870 AT4G30980.2 57.143 63 27 0 315 377 180 242 3.60e-17 83.6
Msa0404870 AT3G62090.1 49.474 95 45 3 308 400 160 253 8.56e-17 82.4
Msa0404870 AT4G28811.1 36.992 246 123 6 248 474 295 527 1.08e-16 83.6
Msa0404870 AT3G62090.2 49.474 95 45 3 308 400 177 270 1.11e-16 82.0
Msa0404870 AT1G26260.3 33.333 165 92 5 260 406 103 267 1.10e-14 75.9
Msa0404870 AT1G26260.4 33.333 165 92 5 260 406 154 318 1.43e-14 75.9
Msa0404870 AT1G26260.1 33.333 165 92 5 260 406 154 318 1.43e-14 75.9
Msa0404870 AT1G26260.6 33.333 165 92 5 260 406 154 318 1.43e-14 75.9
Msa0404870 AT1G26260.2 33.333 165 92 5 260 406 154 318 1.43e-14 75.9
Msa0404870 AT1G26260.5 33.333 165 92 5 260 406 132 296 1.52e-14 75.9
Msa0404870 AT1G68240.1 38.710 124 67 4 315 432 63 183 1.15e-13 70.1
Msa0404870 AT5G61270.1 46.078 102 53 2 287 387 135 235 2.31e-13 72.0
Msa0404870 AT5G61270.2 46.078 102 53 2 287 387 47 147 2.46e-13 70.9
Msa0404870 AT5G61270.3 46.078 102 53 2 287 387 47 147 2.46e-13 70.9
Msa0404870 AT4G33880.1 35.652 115 57 4 296 403 247 351 4.45e-13 71.2
Msa0404870 AT5G43175.1 40.789 76 40 1 307 377 126 201 4.74e-13 68.9
Msa0404870 AT1G68240.2 39.091 110 61 3 315 418 63 172 4.86e-13 67.8
Msa0404870 AT1G02340.1 36.667 120 52 3 281 400 113 208 5.44e-13 70.1
Msa0404870 AT1G02340.2 36.667 120 52 3 281 400 106 201 6.83e-13 69.7
Msa0404870 AT5G50915.1 29.358 218 100 8 238 415 53 256 1.15e-12 68.9
Msa0404870 AT5G50915.2 29.358 218 100 8 238 415 53 256 1.15e-12 68.9
Msa0404870 AT2G14760.1 38.710 93 49 2 290 377 217 306 1.46e-12 69.3
Msa0404870 AT1G27740.1 36.449 107 59 3 291 391 148 251 1.69e-12 68.2
Msa0404870 AT5G50915.3 29.279 222 95 9 238 415 53 256 1.90e-12 68.2
Msa0404870 AT5G50915.4 29.279 222 95 9 238 415 53 256 1.90e-12 68.2
Msa0404870 AT1G68920.3 36.170 141 79 6 315 446 304 442 5.92e-12 68.6
Msa0404870 AT1G68920.1 36.170 141 79 6 315 446 305 443 5.98e-12 68.6
Msa0404870 AT1G68920.4 36.170 141 79 6 315 446 305 443 5.98e-12 68.6
Msa0404870 AT1G68920.2 36.170 141 79 6 315 446 305 443 5.98e-12 68.6
Msa0404870 AT3G23690.1 34.028 144 86 4 239 377 117 256 6.32e-12 67.8
Msa0404870 AT2G18300.3 30.808 198 113 7 274 448 129 325 8.32e-12 67.4
Msa0404870 AT2G18300.2 30.808 198 113 7 274 448 129 325 9.60e-12 67.0
Msa0404870 AT2G14760.3 42.647 68 34 1 315 377 252 319 1.34e-11 66.6
Msa0404870 AT4G34530.1 48.438 64 32 1 315 377 174 237 1.68e-11 66.2
Msa0404870 AT3G07340.2 39.216 102 43 3 292 377 225 323 1.86e-11 66.6
Msa0404870 AT3G07340.1 39.216 102 43 3 292 377 225 323 2.27e-11 66.6
Msa0404870 AT5G48560.2 50.000 64 31 1 315 377 303 366 3.93e-11 65.9
Msa0404870 AT5G67110.2 40.367 109 44 3 254 362 48 135 4.15e-11 61.6
Msa0404870 AT5G48560.1 50.000 64 31 1 315 377 303 366 4.64e-11 65.5
Msa0404870 AT4G36540.1 36.697 109 60 3 277 377 99 206 6.41e-11 63.9
Msa0404870 AT4G36540.2 36.697 109 60 3 277 377 99 206 6.54e-11 63.9
Msa0404870 AT1G10120.2 48.438 64 32 1 315 377 208 271 7.06e-11 64.3
Msa0404870 AT1G10120.1 48.438 64 32 1 315 377 208 271 7.06e-11 64.3
Msa0404870 AT2G18300.1 30.653 199 110 8 274 448 129 323 7.65e-11 63.9
Msa0404870 AT5G67110.3 37.500 136 41 4 254 387 48 141 7.80e-11 62.0

Find 135 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAGATCATCTTAAAATTT+AGG 0.159860 3_2:-37992904 None:intergenic
ACCGTTCCTGATTGGAATTT+TGG 0.193756 3_2:+37990045 Msa0404870:CDS
GGCAAGTGTTCAAGGAAATA+AGG 0.207090 3_2:-37993100 None:intergenic
TTATATAACAATGAAGAAAT+TGG 0.215837 3_2:+37993024 Msa0404870:three_prime_UTR
AACAATGAAGAAATTGGTTT+TGG 0.267766 3_2:+37993030 Msa0404870:three_prime_UTR
TACTTCATCTTCTGGTGGTT+CGG 0.273371 3_2:+37990912 Msa0404870:CDS
GTTACTCCATAGGTTCTTCT+AGG 0.280860 3_2:-37992721 None:intergenic
GAACTTGTTTCTTATTTGTT+TGG 0.281722 3_2:-37990273 None:intergenic
TGATGCTGTGGGTGGCAAAA+TGG 0.294348 3_2:+37992499 Msa0404870:CDS
CATTGGTCCACTGCTATTGC+TGG 0.300560 3_2:-37992456 None:intergenic
TGTTCAAGTGGATCCTCAAT+AGG 0.303381 3_2:-37990403 None:intergenic
AGGCACCTAAAACAGGATTT+TGG 0.303664 3_2:-37991910 None:intergenic
TAAATCAGCCGTGAGGAAAA+AGG 0.304657 3_2:+37991134 Msa0404870:CDS
GAGTCTAAATGTGAAATAAA+AGG 0.312754 3_2:+37992977 Msa0404870:three_prime_UTR
ACATCATTTCTGACTTGTTC+AGG 0.332564 3_2:-37990832 None:intergenic
ATCACTTCAGTTACAACTTC+AGG 0.334793 3_2:+37991615 Msa0404870:CDS
AAGGTGGAAGTTCAGATAAA+AGG 0.339660 3_2:-37990441 None:intergenic
GATGCAAAATCCTGCTCTTT+CGG 0.342576 3_2:+37991949 Msa0404870:CDS
GGGTATCAAGCAACGGTGTT+TGG 0.343568 3_2:+37990791 Msa0404870:CDS
ATGAACTTGTGGAGCTTCTA+TGG 0.349007 3_2:+37990224 Msa0404870:CDS
CATCTTGATCCTGTTGGACT+TGG 0.357855 3_2:-37990762 None:intergenic
GTTTATAAATAGAGGCAATT+AGG 0.360186 3_2:+37992876 Msa0404870:three_prime_UTR
ACTTCATCTTCTGGTGGTTC+GGG 0.366507 3_2:+37990913 Msa0404870:CDS
AAGATGATGAAACTGTTTCA+TGG 0.378684 3_2:+37990368 Msa0404870:CDS
TTGAGTGTGTCCTTATGCTT+TGG 0.390026 3_2:-37989224 None:intergenic
GTTGTTTCTTTGCAATGAAT+CGG 0.393694 3_2:-37990560 None:intergenic
GAAAATATGTTTATAAATAG+AGG 0.394472 3_2:+37992868 Msa0404870:three_prime_UTR
GGCATCTCAGCGGTCAGGTT+CGG 0.395919 3_2:+37991155 Msa0404870:CDS
ATGTTTGCTGTTCCACTCAT+TGG 0.397921 3_2:-37992473 None:intergenic
TGCTTACATCTTGATCCTGT+TGG 0.402600 3_2:-37990768 None:intergenic
TTTGTTGCTGGTTACTCCAT+AGG 0.402807 3_2:-37992731 None:intergenic
GACGGATCCAGAGGCATTCT+CGG 0.403301 3_2:-37991848 None:intergenic
GCAAGTGTTCAAGGAAATAA+GGG 0.408689 3_2:-37993099 None:intergenic
GTCATGACTTCTTGTAGATA+AGG 0.410497 3_2:-37990959 None:intergenic
GGTGCAAATAGGTACTGGTT+TGG 0.413855 3_2:+37990002 Msa0404870:intron
TCAGCACTATATGTCACAAA+TGG 0.421098 3_2:+37991772 Msa0404870:CDS
TTGTTATATAATTTCAATGA+AGG 0.423411 3_2:-37993012 None:intergenic
ATAGAAGCTCCACAAGTTCA+TGG 0.431688 3_2:-37990222 None:intergenic
TAATATGAGAACAATATTAG+AGG 0.432266 3_2:-37992554 None:intergenic
TCTTATGCAAAATGCTTCTC+AGG 0.438287 3_2:+37992000 Msa0404870:CDS
TTGAAAGACTCGACGTTACA+AGG 0.440966 3_2:-37990460 None:intergenic
ACAATTCCTCGGCATGAGAA+TGG 0.443028 3_2:+37990862 Msa0404870:CDS
CTCACACTTTCCAAAGCATA+AGG 0.443353 3_2:+37989214 Msa0404870:five_prime_UTR
TGAACAACACCGTTCCTGAT+TGG 0.444912 3_2:+37990037 Msa0404870:CDS
TTGTTTCTTTGCAATGAATC+GGG 0.448535 3_2:-37990559 None:intergenic
CGGAAGCAACCAAGTCCAAC+AGG 0.451058 3_2:+37990753 Msa0404870:CDS
CCATATCTGTACATATTCAT+TGG 0.451704 3_2:-37992395 None:intergenic
GTAGATGCTAAAGTAACATT+GGG 0.457098 3_2:-37990634 None:intergenic
TGGCTCGTTAATGTCTGGTT+TGG 0.458380 3_2:-37991890 None:intergenic
TAGTTGAAGGCACCTAAAAC+AGG 0.459214 3_2:-37991917 None:intergenic
CTATATGTCACAAATGGGTA+TGG 0.459276 3_2:+37991778 Msa0404870:CDS
GGAGCAATATGCTCGTTACA+TGG 0.460185 3_2:+37991970 Msa0404870:CDS
TAATCAAAAGAAGCAACCTA+TGG 0.462757 3_2:+37990086 Msa0404870:CDS
GATCATCTTAAAATTTAGGT+TGG 0.466929 3_2:-37992900 None:intergenic
CAATTCCTCGGCATGAGAAT+GGG 0.468759 3_2:+37990863 Msa0404870:CDS
AGAAAAGTTTACAACCTTGC+CGG 0.469128 3_2:-37990596 None:intergenic
GTTCAAGTGGATCCTCAATA+GGG 0.473250 3_2:-37990402 None:intergenic
AACAGGATCAAGATGTAAGC+AGG 0.473432 3_2:+37990770 Msa0404870:CDS
TCGGCATGAGAATGGGAAAT+CGG 0.473920 3_2:+37990870 Msa0404870:CDS
GATCCTCAATAGGGTATTGT+TGG 0.475150 3_2:-37990393 None:intergenic
TTCTGTTAGGTGATGTGGAT+GGG 0.477428 3_2:+37991716 Msa0404870:intron
GAACATAATTCTTGTTCAAG+TGG 0.477770 3_2:-37990415 None:intergenic
TAGGTGATGTGGATGGGATC+TGG 0.479810 3_2:+37991722 Msa0404870:intron
AACAACGATTTGTGTGGATC+CGG 0.480481 3_2:+37990577 Msa0404870:CDS
ATAGGAAATTCCTGAACAAA+AGG 0.481459 3_2:-37990508 None:intergenic
GCAATTACCGAGAATGCCTC+TGG 0.483577 3_2:+37991841 Msa0404870:CDS
TGTTCAGGAATTTCCTATGT+CGG 0.485624 3_2:+37990513 Msa0404870:CDS
CCAATGAATATGTACAGATA+TGG 0.491789 3_2:+37992395 Msa0404870:CDS
TGTAGATGCTAAAGTAACAT+TGG 0.495901 3_2:-37990635 None:intergenic
CATGACACCGATGATGCTAC+CGG 0.496261 3_2:+37991745 Msa0404870:CDS
TTTCTGTTAGGTGATGTGGA+TGG 0.500303 3_2:+37991715 Msa0404870:intron
GATGCTGTGGGTGGCAAAAT+GGG 0.501876 3_2:+37992500 Msa0404870:CDS
GGTGGTTCGGGAAGTAGTCT+TGG 0.502929 3_2:+37990925 Msa0404870:CDS
TCACTCCCAAAATTCCAATC+AGG 0.503469 3_2:-37990051 None:intergenic
AATCAAAAGAAGCAACCTAT+GGG 0.506530 3_2:+37990087 Msa0404870:CDS
ATTTCTGACTTGTTCAGGCT+CGG 0.509459 3_2:-37990827 None:intergenic
ACATATATTTATAGTTGAGC+TGG 0.511215 3_2:-37992764 None:intergenic
GGAATTCCTAGAAGAACCTA+TGG 0.512827 3_2:+37992715 Msa0404870:three_prime_UTR
GAATGGGAAATCGGAGATGT+TGG 0.520509 3_2:+37990879 Msa0404870:CDS
ACTCATACCTCACAGTAGTA+AGG 0.524016 3_2:+37991350 Msa0404870:CDS
CAGCACTATATGTCACAAAT+GGG 0.528954 3_2:+37991773 Msa0404870:CDS
AGTGCATAATCTTTCAGAAA+GGG 0.530854 3_2:+37991200 Msa0404870:CDS
GACATATAGTGCTGATATCC+CGG 0.534372 3_2:-37991764 None:intergenic
GTTACTTTAGCATCTACAAA+CGG 0.535195 3_2:+37990640 Msa0404870:CDS
GTAGAAAGTAGCTGAAAGCT+TGG 0.535957 3_2:-37989298 None:intergenic
CAAAGCATCAATGTTAGAAG+AGG 0.538478 3_2:+37991576 Msa0404870:CDS
TGTCTGGTTTGGTGTCTGAC+AGG 0.541123 3_2:-37991879 None:intergenic
GGCATTCTCGGTAATTGCAT+CGG 0.543563 3_2:-37991836 None:intergenic
TGAAACCTCGGAGCCGACAT+AGG 0.544656 3_2:-37990526 None:intergenic
TGATATCCCGGTAGCATCAT+CGG 0.547358 3_2:-37991752 None:intergenic
GCATATTGCTCCGAAAGAGC+AGG 0.550353 3_2:-37991959 None:intergenic
TTACAGGTTAATTAGTCTAG+AGG 0.560592 3_2:+37992694 Msa0404870:three_prime_UTR
CAAAGAAACAACGATTTGTG+TGG 0.566041 3_2:+37990571 Msa0404870:CDS
GACAATAGAGAAGTATGTGT+TGG 0.566323 3_2:-37992527 None:intergenic
TGGTGTCTGACAGGAAGAAA+CGG 0.568009 3_2:-37991870 None:intergenic
ATTGGTCCACTGCTATTGCT+GGG 0.572900 3_2:-37992455 None:intergenic
CGATTTGTGTGGATCCGGCA+AGG 0.573793 3_2:+37990582 Msa0404870:CDS
GTGGAGCTTCTATGGCAGAA+TGG 0.575038 3_2:+37990232 Msa0404870:CDS
CATCAGCAAGTCAGAAACAA+AGG 0.580980 3_2:+37989320 Msa0404870:five_prime_UTR
AGCGGTCAGGTTCGGCTCGT+AGG 0.585796 3_2:+37991163 Msa0404870:CDS
CCAGAAGATGAAGTAAAAGC+AGG 0.586941 3_2:-37990904 None:intergenic
GATCCAACAATACCCTATTG+AGG 0.587994 3_2:+37990390 Msa0404870:CDS
AAGTGCATAATCTTTCAGAA+AGG 0.591388 3_2:+37991199 Msa0404870:CDS
TATATGTCACAAATGGGTAT+GGG 0.594345 3_2:+37991779 Msa0404870:CDS
CCCAAAATTCCAATCAGGAA+CGG 0.594898 3_2:-37990046 None:intergenic
ATGACACCGATGATGCTACC+GGG 0.598634 3_2:+37991746 Msa0404870:CDS
TTAAGATGATCTATTCGTTG+CGG 0.601252 3_2:+37992912 Msa0404870:three_prime_UTR
AGCAAACATTAATGATGCTG+TGG 0.601820 3_2:+37992487 Msa0404870:CDS
GATTTCCCATTCTCATGCCG+AGG 0.602580 3_2:-37990868 None:intergenic
CAGGCTGGACCATGAACTTG+TGG 0.607340 3_2:+37990213 Msa0404870:intron
GATGGATGTTGAAGATTCAG+TGG 0.609243 3_2:+37990996 Msa0404870:CDS
GAGCAATATGCTCGTTACAT+GGG 0.614005 3_2:+37991971 Msa0404870:CDS
GGAAATTCCTGAACAAAAGG+CGG 0.618190 3_2:-37990505 None:intergenic
CTGTGGGTGGCAAAATGGGT+AGG 0.622005 3_2:+37992504 Msa0404870:CDS
ATGTTCAGAAGACAATTCCT+CGG 0.630703 3_2:+37990851 Msa0404870:CDS
GAGTGTTCGACGATGACAGT+TGG 0.633825 3_2:+37990718 Msa0404870:CDS
GGAACATGATGATGAAACCT+CGG 0.639628 3_2:-37990538 None:intergenic
ATATTGAACACACACCCCAT+AGG 0.642122 3_2:-37990102 None:intergenic
ACAGGATCAAGATGTAAGCA+GGG 0.649737 3_2:+37990771 Msa0404870:CDS
AGATTCAGTGGAACAAAGCG+AGG 0.656069 3_2:+37991008 Msa0404870:CDS
GTAAGCAGGGTATCAAGCAA+CGG 0.657240 3_2:+37990784 Msa0404870:CDS
ACAGTTGGTTCGAGTTATTG+CGG 0.658618 3_2:+37990733 Msa0404870:CDS
GAAGAAACGGACGGATCCAG+AGG 0.660505 3_2:-37991857 None:intergenic
AACATTAATGATGCTGTGGG+TGG 0.661408 3_2:+37992491 Msa0404870:CDS
GTCTGACAGGAAGAAACGGA+CGG 0.668045 3_2:-37991866 None:intergenic
AATAGCAGTGGACCAATGAG+TGG 0.668226 3_2:+37992461 Msa0404870:CDS
GGTCCACTGCTATTGCTGGG+TGG 0.669356 3_2:-37992452 None:intergenic
ATTCCACCCAGCAATAGCAG+TGG 0.670400 3_2:+37992449 Msa0404870:CDS
AATTTCCTATGTCGGCTCCG+AGG 0.681257 3_2:+37990521 Msa0404870:CDS
ATCAAAAGAAGCAACCTATG+GGG 0.695787 3_2:+37990088 Msa0404870:CDS
GCAAACATTAATGATGCTGT+GGG 0.698935 3_2:+37992488 Msa0404870:CDS
GATTATGCACTTCAGCAGCG+CGG 0.709911 3_2:-37991188 None:intergenic
TGACAAACCTTACTACTGTG+AGG 0.713524 3_2:-37991357 None:intergenic
AAAGACTCGACGTTACAAGG+TGG 0.729579 3_2:-37990457 None:intergenic
CAGAACTTAAATCAGCCGTG+AGG 0.748263 3_2:+37991127 Msa0404870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGGAATAAAAAATTTAAA+GGG - chr3_2:37989828-37989847 None:intergenic 10.0%
!! AAAAGGAATAAAAAATTTAA+AGG - chr3_2:37989829-37989848 None:intergenic 10.0%
!!! GATTTTAATATTGATAAAAA+AGG - chr3_2:37989846-37989865 None:intergenic 10.0%
!! TATTTGATTATTCATTTAAA+TGG + chr3_2:37989882-37989901 Msa0404870:intron 10.0%
!! AGAATATCATTAATTTATAA+GGG - chr3_2:37992320-37992339 None:intergenic 10.0%
!! AATGTGAATGTTATAAATAA+TGG + chr3_2:37989408-37989427 Msa0404870:intron 15.0%
!!! TTCTTATTTTCTTCTTTTTT+AGG + chr3_2:37989526-37989545 Msa0404870:intron 15.0%
!!! AAACTAATTTTCTTTCATTT+TGG + chr3_2:37989981-37990000 Msa0404870:intron 15.0%
!!! AAATTTTAGAGACAAAATTA+CGG + chr3_2:37990669-37990688 Msa0404870:CDS 15.0%
!! TGAAAAACATCTAATTATAA+AGG - chr3_2:37991059-37991078 None:intergenic 15.0%
!!! ATTTTTTTGATTTTTCTGTT+AGG + chr3_2:37991703-37991722 Msa0404870:intron 15.0%
!! GAATATCATTAATTTATAAG+GGG - chr3_2:37992319-37992338 None:intergenic 15.0%
!! GAGAATATCATTAATTTATA+AGG - chr3_2:37992321-37992340 None:intergenic 15.0%
!! GAAAATATGTTTATAAATAG+AGG + chr3_2:37992868-37992887 Msa0404870:three_prime_UTR 15.0%
!! AATAGATCATCTTAAAATTT+AGG - chr3_2:37992907-37992926 None:intergenic 15.0%
!! TTGTTATATAATTTCAATGA+AGG - chr3_2:37993015-37993034 None:intergenic 15.0%
!! TTATATAACAATGAAGAAAT+TGG + chr3_2:37993024-37993043 Msa0404870:three_prime_UTR 15.0%
!! ATAACATTCACATTTAGATA+AGG - chr3_2:37989402-37989421 None:intergenic 20.0%
!! AACATTAAACACAACAAATT+AGG - chr3_2:37989613-37989632 None:intergenic 20.0%
!!! TATTTTATTCTTCTGCTTAA+TGG + chr3_2:37989916-37989935 Msa0404870:intron 20.0%
!!! AATTTTAGAGACAAAATTAC+GGG + chr3_2:37990670-37990689 Msa0404870:CDS 20.0%
!! AGGTAAAATTAATTTCCATA+GGG - chr3_2:37992352-37992371 None:intergenic 20.0%
!! AAGGTAAAATTAATTTCCAT+AGG - chr3_2:37992353-37992372 None:intergenic 20.0%
!!! ATTAATTTTACCTTGTATGT+TGG + chr3_2:37992359-37992378 Msa0404870:intron 20.0%
!! TAATATGAGAACAATATTAG+AGG - chr3_2:37992557-37992576 None:intergenic 20.0%
!!! TATACAAGTGACTTATTTTT+TGG + chr3_2:37992815-37992834 Msa0404870:three_prime_UTR 20.0%
!!! ATACAAGTGACTTATTTTTT+GGG + chr3_2:37992816-37992835 Msa0404870:three_prime_UTR 20.0%
!! AAATCTATTTTGCTCAGTTT+AGG + chr3_2:37989356-37989375 Msa0404870:five_prime_UTR 25.0%
!! TTTTTATGATCTTTCTCTTC+TGG + chr3_2:37989648-37989667 Msa0404870:intron 25.0%
!! TTTTATGATCTTTCTCTTCT+GGG + chr3_2:37989649-37989668 Msa0404870:intron 25.0%
!! AGACTTGATTTTTCCAATTA+TGG + chr3_2:37989707-37989726 Msa0404870:intron 25.0%
!! GACTTGATTTTTCCAATTAT+GGG + chr3_2:37989708-37989727 Msa0404870:intron 25.0%
!! GAACTTGTTTCTTATTTGTT+TGG - chr3_2:37990276-37990295 None:intergenic 25.0%
!! TTCACTGAGTTATGATTTTA+CGG + chr3_2:37991087-37991106 Msa0404870:intron 25.0%
!! ATTTTACGGTTTGTGTTAAT+AGG + chr3_2:37991101-37991120 Msa0404870:intron 25.0%
!!! AACCGTGTTTTATTTTTTGT+AGG + chr3_2:37991383-37991402 Msa0404870:intron 25.0%
! TGCCTACAAAAAATAAAACA+CGG - chr3_2:37991388-37991407 None:intergenic 25.0%
!!! TGCTAGTGGTTAATTTTTTA+AGG + chr3_2:37991410-37991429 Msa0404870:intron 25.0%
!!! ACAAAAAATTTGTTAGTAGC+AGG + chr3_2:37991435-37991454 Msa0404870:intron 25.0%
!!! ATGCAAGAGATTATTTTGTA+TGG - chr3_2:37991656-37991675 None:intergenic 25.0%
! AAAAATTCTTTAGCAATGTG+AGG - chr3_2:37991689-37991708 None:intergenic 25.0%
! AATAAGCTGAAAACAACTTA+TGG - chr3_2:37992123-37992142 None:intergenic 25.0%
! ACTGTTTACATGTAAGATAT+AGG - chr3_2:37992180-37992199 None:intergenic 25.0%
!! TTAAGTTAGTTTATCCAAAC+AGG + chr3_2:37992275-37992294 Msa0404870:intron 25.0%
!! TAAGTTAGTTTATCCAAACA+GGG + chr3_2:37992276-37992295 Msa0404870:intron 25.0%
!! TTTTAAATTTAGACCCTGTT+TGG - chr3_2:37992292-37992311 None:intergenic 25.0%
!!! TTACTTGTCATTTTGTTTAC+AGG + chr3_2:37992678-37992697 Msa0404870:three_prime_UTR 25.0%
! ACATATATTTATAGTTGAGC+TGG - chr3_2:37992767-37992786 None:intergenic 25.0%
! GTTTATAAATAGAGGCAATT+AGG + chr3_2:37992876-37992895 Msa0404870:three_prime_UTR 25.0%
! GATCATCTTAAAATTTAGGT+TGG - chr3_2:37992903-37992922 None:intergenic 25.0%
! GAGTCTAAATGTGAAATAAA+AGG + chr3_2:37992977-37992996 Msa0404870:three_prime_UTR 25.0%
!!! AACAATGAAGAAATTGGTTT+TGG + chr3_2:37993030-37993049 Msa0404870:three_prime_UTR 25.0%
AATTTCAAGAGTCCCATAAT+TGG - chr3_2:37989723-37989742 None:intergenic 30.0%
AATTATGGGACTCTTGAAAT+TGG + chr3_2:37989722-37989741 Msa0404870:intron 30.0%
ACTCTTGAAATTGGAATTCT+TGG + chr3_2:37989731-37989750 Msa0404870:intron 30.0%
TTAAGAGTTTAGATCATGTG+TGG - chr3_2:37989804-37989823 None:intergenic 30.0%
GGAGTCAAATTCTACTTAAA+AGG + chr3_2:37989937-37989956 Msa0404870:intron 30.0%
!! TCTTTCATTTTGGTGCAAAT+AGG + chr3_2:37989991-37990010 Msa0404870:intron 30.0%
TAATCAAAAGAAGCAACCTA+TGG + chr3_2:37990086-37990105 Msa0404870:CDS 30.0%
AATCAAAAGAAGCAACCTAT+GGG + chr3_2:37990087-37990106 Msa0404870:CDS 30.0%
AACCATGTGTTTAACATTAC+AGG + chr3_2:37990194-37990213 Msa0404870:intron 30.0%
AAGATGATGAAACTGTTTCA+TGG + chr3_2:37990368-37990387 Msa0404870:CDS 30.0%
GAACATAATTCTTGTTCAAG+TGG - chr3_2:37990418-37990437 None:intergenic 30.0%
ATAGGAAATTCCTGAACAAA+AGG - chr3_2:37990511-37990530 None:intergenic 30.0%
! TTGTTTCTTTGCAATGAATC+GGG - chr3_2:37990562-37990581 None:intergenic 30.0%
!! GTTGTTTCTTTGCAATGAAT+CGG - chr3_2:37990563-37990582 None:intergenic 30.0%
GTAGATGCTAAAGTAACATT+GGG - chr3_2:37990637-37990656 None:intergenic 30.0%
TGTAGATGCTAAAGTAACAT+TGG - chr3_2:37990638-37990657 None:intergenic 30.0%
! GTTACTTTAGCATCTACAAA+CGG + chr3_2:37990640-37990659 Msa0404870:CDS 30.0%
AAGTGCATAATCTTTCAGAA+AGG + chr3_2:37991199-37991218 Msa0404870:CDS 30.0%
AGTGCATAATCTTTCAGAAA+GGG + chr3_2:37991200-37991219 Msa0404870:CDS 30.0%
ATAATCTTTCAGAAAGGGTA+AGG + chr3_2:37991205-37991224 Msa0404870:intron 30.0%
TAATCTTTCAGAAAGGGTAA+GGG + chr3_2:37991206-37991225 Msa0404870:intron 30.0%
!! TTATTGGTTTATTGATGCAG+AGG + chr3_2:37991286-37991305 Msa0404870:intron 30.0%
ATTAAATTGACGCGAATTCA+GGG - chr3_2:37991468-37991487 None:intergenic 30.0%
GCGATTAAATCATACAACAT+GGG - chr3_2:37991514-37991533 None:intergenic 30.0%
TGCGATTAAATCATACAACA+TGG - chr3_2:37991515-37991534 None:intergenic 30.0%
TATATGTCACAAATGGGTAT+GGG + chr3_2:37991779-37991798 Msa0404870:CDS 30.0%
AGACTATTTAGGAGATCTTA+TGG + chr3_2:37992077-37992096 Msa0404870:intron 30.0%
AAACTATCATGAAGAACTTG+TGG - chr3_2:37992147-37992166 None:intergenic 30.0%
! TATTCTCATGTTTTACCCTA+TGG + chr3_2:37992334-37992353 Msa0404870:intron 30.0%
CCATATCTGTACATATTCAT+TGG - chr3_2:37992398-37992417 None:intergenic 30.0%
CCAATGAATATGTACAGATA+TGG + chr3_2:37992395-37992414 Msa0404870:CDS 30.0%
! TTGACTATTTTGTACAGCTT+GGG - chr3_2:37992423-37992442 None:intergenic 30.0%
! TTTGACTATTTTGTACAGCT+TGG - chr3_2:37992424-37992443 None:intergenic 30.0%
! TTACAGGTTAATTAGTCTAG+AGG + chr3_2:37992694-37992713 Msa0404870:three_prime_UTR 30.0%
TTAAGATGATCTATTCGTTG+CGG + chr3_2:37992912-37992931 Msa0404870:three_prime_UTR 30.0%
AGAAAAAGCAGGAACAAACA+AGG + chr3_2:37989265-37989284 Msa0404870:five_prime_UTR 35.0%
!! ATTTTGGTGCAAATAGGTAC+TGG + chr3_2:37989997-37990016 Msa0404870:intron 35.0%
ATCAAAAGAAGCAACCTATG+GGG + chr3_2:37990088-37990107 Msa0404870:CDS 35.0%
AGCCTGTAATGTTAAACACA+TGG - chr3_2:37990199-37990218 None:intergenic 35.0%
ATGTGTTTAACATTACAGGC+TGG + chr3_2:37990198-37990217 Msa0404870:intron 35.0%
AAGGTGGAAGTTCAGATAAA+AGG - chr3_2:37990444-37990463 None:intergenic 35.0%
TGTTCAGGAATTTCCTATGT+CGG + chr3_2:37990513-37990532 Msa0404870:CDS 35.0%
CAAAGAAACAACGATTTGTG+TGG + chr3_2:37990571-37990590 Msa0404870:CDS 35.0%
AGAAAAGTTTACAACCTTGC+CGG - chr3_2:37990599-37990618 None:intergenic 35.0%
!! ACATCATTTCTGACTTGTTC+AGG - chr3_2:37990835-37990854 None:intergenic 35.0%
ATGTTCAGAAGACAATTCCT+CGG + chr3_2:37990851-37990870 Msa0404870:CDS 35.0%
GTCATGACTTCTTGTAGATA+AGG - chr3_2:37990962-37990981 None:intergenic 35.0%
CAAGAAGTCATGACAAAAAG+AGG + chr3_2:37990968-37990987 Msa0404870:CDS 35.0%
TGACAAAAAGAGGAAAGTGA+TGG + chr3_2:37990978-37990997 Msa0404870:CDS 35.0%
!! TCGCTTACAAGAAGTGTTAT+TGG + chr3_2:37991270-37991289 Msa0404870:intron 35.0%
! TTTTTGTAGGCAATTGCTAG+TGG + chr3_2:37991396-37991415 Msa0404870:intron 35.0%
GATTAAATTGACGCGAATTC+AGG - chr3_2:37991469-37991488 None:intergenic 35.0%
GTTGTATGATTTAATCGCAG+TGG + chr3_2:37991516-37991535 Msa0404870:intron 35.0%
! CAAAGCATCAATGTTAGAAG+AGG + chr3_2:37991576-37991595 Msa0404870:CDS 35.0%
ATCACTTCAGTTACAACTTC+AGG + chr3_2:37991615-37991634 Msa0404870:CDS 35.0%
! GATTTTTCTGTTAGGTGATG+TGG + chr3_2:37991711-37991730 Msa0404870:intron 35.0%
TCAGCACTATATGTCACAAA+TGG + chr3_2:37991772-37991791 Msa0404870:CDS 35.0%
CAGCACTATATGTCACAAAT+GGG + chr3_2:37991773-37991792 Msa0404870:CDS 35.0%
CTATATGTCACAAATGGGTA+TGG + chr3_2:37991778-37991797 Msa0404870:CDS 35.0%
!! AATTGCATCGGATTTTGAAG+TGG - chr3_2:37991827-37991846 None:intergenic 35.0%
!! CATCTGATTTTGGTAGTTGA+AGG - chr3_2:37991933-37991952 None:intergenic 35.0%
! CAGGATTTTGCATCTGATTT+TGG - chr3_2:37991943-37991962 None:intergenic 35.0%
TCTTATGCAAAATGCTTCTC+AGG + chr3_2:37992000-37992019 Msa0404870:CDS 35.0%
AAAATGCTTCTCAGGTACTT+AGG + chr3_2:37992008-37992027 Msa0404870:intron 35.0%
! TCAGGTACTTAGGATTTGTT+TGG + chr3_2:37992018-37992037 Msa0404870:intron 35.0%
AAACACCTGAGAGACTATTT+AGG + chr3_2:37992066-37992085 Msa0404870:intron 35.0%
CAAAATAGTGCCAACATACA+AGG - chr3_2:37992372-37992391 None:intergenic 35.0%
! TGACTATTTTGTACAGCTTG+GGG - chr3_2:37992422-37992441 None:intergenic 35.0%
AGCAAACATTAATGATGCTG+TGG + chr3_2:37992487-37992506 Msa0404870:CDS 35.0%
GCAAACATTAATGATGCTGT+GGG + chr3_2:37992488-37992507 Msa0404870:CDS 35.0%
! GACAATAGAGAAGTATGTGT+TGG - chr3_2:37992530-37992549 None:intergenic 35.0%
!! GGCAAACATATTTTTGTTGC+TGG - chr3_2:37992746-37992765 None:intergenic 35.0%
GCAAGTGTTCAAGGAAATAA+GGG - chr3_2:37993102-37993121 None:intergenic 35.0%
CTCACACTTTCCAAAGCATA+AGG + chr3_2:37989214-37989233 Msa0404870:five_prime_UTR 40.0%
TTGAGTGTGTCCTTATGCTT+TGG - chr3_2:37989227-37989246 None:intergenic 40.0%
!!! CCTGCTTTTTCTTCTGTGTT+TGG - chr3_2:37989257-37989276 None:intergenic 40.0%
CCAAACACAGAAGAAAAAGC+AGG + chr3_2:37989254-37989273 Msa0404870:five_prime_UTR 40.0%
GTAGAAAGTAGCTGAAAGCT+TGG - chr3_2:37989301-37989320 None:intergenic 40.0%
CATCAGCAAGTCAGAAACAA+AGG + chr3_2:37989320-37989339 Msa0404870:five_prime_UTR 40.0%
! ACCGTTCCTGATTGGAATTT+TGG + chr3_2:37990045-37990064 Msa0404870:CDS 40.0%
CCCAAAATTCCAATCAGGAA+CGG - chr3_2:37990049-37990068 None:intergenic 40.0%
! CCGTTCCTGATTGGAATTTT+GGG + chr3_2:37990046-37990065 Msa0404870:CDS 40.0%
TCACTCCCAAAATTCCAATC+AGG - chr3_2:37990054-37990073 None:intergenic 40.0%
ATATTGAACACACACCCCAT+AGG - chr3_2:37990105-37990124 None:intergenic 40.0%
ATAGAAGCTCCACAAGTTCA+TGG - chr3_2:37990225-37990244 None:intergenic 40.0%
ATGAACTTGTGGAGCTTCTA+TGG + chr3_2:37990224-37990243 Msa0404870:CDS 40.0%
GATCCAACAATACCCTATTG+AGG + chr3_2:37990390-37990409 Msa0404870:CDS 40.0%
!! GATCCTCAATAGGGTATTGT+TGG - chr3_2:37990396-37990415 None:intergenic 40.0%
GTTCAAGTGGATCCTCAATA+GGG - chr3_2:37990405-37990424 None:intergenic 40.0%
TGTTCAAGTGGATCCTCAAT+AGG - chr3_2:37990406-37990425 None:intergenic 40.0%
TTGAAAGACTCGACGTTACA+AGG - chr3_2:37990463-37990482 None:intergenic 40.0%
!! AAAGGCGGTTTTGTATTCGT+CGG - chr3_2:37990493-37990512 None:intergenic 40.0%
! TACAAAACCGCCTTTTGTTC+AGG + chr3_2:37990498-37990517 Msa0404870:CDS 40.0%
GGAAATTCCTGAACAAAAGG+CGG - chr3_2:37990508-37990527 None:intergenic 40.0%
! GGAACATGATGATGAAACCT+CGG - chr3_2:37990541-37990560 None:intergenic 40.0%
AACAACGATTTGTGTGGATC+CGG + chr3_2:37990577-37990596 Msa0404870:CDS 40.0%
!! ACAGTTGGTTCGAGTTATTG+CGG + chr3_2:37990733-37990752 Msa0404870:CDS 40.0%
TGCTTACATCTTGATCCTGT+TGG - chr3_2:37990771-37990790 None:intergenic 40.0%
AACAGGATCAAGATGTAAGC+AGG + chr3_2:37990770-37990789 Msa0404870:CDS 40.0%
ACAGGATCAAGATGTAAGCA+GGG + chr3_2:37990771-37990790 Msa0404870:CDS 40.0%
!! ATTTCTGACTTGTTCAGGCT+CGG - chr3_2:37990830-37990849 None:intergenic 40.0%
CCAGAAGATGAAGTAAAAGC+AGG - chr3_2:37990907-37990926 None:intergenic 40.0%
!! CCTGCTTTTACTTCATCTTC+TGG + chr3_2:37990904-37990923 Msa0404870:CDS 40.0%
! GCTTTTACTTCATCTTCTGG+TGG + chr3_2:37990907-37990926 Msa0404870:CDS 40.0%
TACTTCATCTTCTGGTGGTT+CGG + chr3_2:37990912-37990931 Msa0404870:CDS 40.0%
GATGGATGTTGAAGATTCAG+TGG + chr3_2:37990996-37991015 Msa0404870:CDS 40.0%
AGGTAAAAAGATAGAGTGCG+CGG - chr3_2:37991039-37991058 None:intergenic 40.0%
TAAATCAGCCGTGAGGAAAA+AGG + chr3_2:37991134-37991153 Msa0404870:CDS 40.0%
ACTCATACCTCACAGTAGTA+AGG + chr3_2:37991350-37991369 Msa0404870:CDS 40.0%
TGACAAACCTTACTACTGTG+AGG - chr3_2:37991360-37991379 None:intergenic 40.0%
TTTCTGTTAGGTGATGTGGA+TGG + chr3_2:37991715-37991734 Msa0404870:intron 40.0%
TTCTGTTAGGTGATGTGGAT+GGG + chr3_2:37991716-37991735 Msa0404870:intron 40.0%
!! GACATATAGTGCTGATATCC+CGG - chr3_2:37991767-37991786 None:intergenic 40.0%
!!! TTTTGAAGTGGAGGAAACGA+AGG - chr3_2:37991815-37991834 None:intergenic 40.0%
!!! GATTTTGGCTCGTTAATGTC+TGG - chr3_2:37991898-37991917 None:intergenic 40.0%
! ACGAGCCAAAATCCTGTTTT+AGG + chr3_2:37991905-37991924 Msa0404870:CDS 40.0%
! AGGCACCTAAAACAGGATTT+TGG - chr3_2:37991913-37991932 None:intergenic 40.0%
!! TAGTTGAAGGCACCTAAAAC+AGG - chr3_2:37991920-37991939 None:intergenic 40.0%
GATGCAAAATCCTGCTCTTT+CGG + chr3_2:37991949-37991968 Msa0404870:CDS 40.0%
GAGCAATATGCTCGTTACAT+GGG + chr3_2:37991971-37991990 Msa0404870:CDS 40.0%
GATCTCCTAAATAGTCTCTC+AGG - chr3_2:37992074-37992093 None:intergenic 40.0%
!! ATGTTTGCTGTTCCACTCAT+TGG - chr3_2:37992476-37992495 None:intergenic 40.0%
AACATTAATGATGCTGTGGG+TGG + chr3_2:37992491-37992510 Msa0404870:CDS 40.0%
GGAATTCCTAGAAGAACCTA+TGG + chr3_2:37992715-37992734 Msa0404870:three_prime_UTR 40.0%
GTTACTCCATAGGTTCTTCT+AGG - chr3_2:37992724-37992743 None:intergenic 40.0%
! TTTGTTGCTGGTTACTCCAT+AGG - chr3_2:37992734-37992753 None:intergenic 40.0%
GGCAAGTGTTCAAGGAAATA+AGG - chr3_2:37993103-37993122 None:intergenic 40.0%
!! GGTGCAAATAGGTACTGGTT+TGG + chr3_2:37990002-37990021 Msa0404870:intron 45.0%
TGAACAACACCGTTCCTGAT+TGG + chr3_2:37990037-37990056 Msa0404870:CDS 45.0%
AAAGACTCGACGTTACAAGG+TGG - chr3_2:37990460-37990479 None:intergenic 45.0%
CATCTTGATCCTGTTGGACT+TGG - chr3_2:37990765-37990784 None:intergenic 45.0%
! GTAAGCAGGGTATCAAGCAA+CGG + chr3_2:37990784-37990803 Msa0404870:CDS 45.0%
ACAATTCCTCGGCATGAGAA+TGG + chr3_2:37990862-37990881 Msa0404870:CDS 45.0%
CAATTCCTCGGCATGAGAAT+GGG + chr3_2:37990863-37990882 Msa0404870:CDS 45.0%
TCGGCATGAGAATGGGAAAT+CGG + chr3_2:37990870-37990889 Msa0404870:CDS 45.0%
GAATGGGAAATCGGAGATGT+TGG + chr3_2:37990879-37990898 Msa0404870:CDS 45.0%
ACTTCATCTTCTGGTGGTTC+GGG + chr3_2:37990913-37990932 Msa0404870:CDS 45.0%
AGATTCAGTGGAACAAAGCG+AGG + chr3_2:37991008-37991027 Msa0404870:CDS 45.0%
CAGAACTTAAATCAGCCGTG+AGG + chr3_2:37991127-37991146 Msa0404870:CDS 45.0%
! CTGAGATGCCTTTTTCCTCA+CGG - chr3_2:37991145-37991164 None:intergenic 45.0%
!! TGAGGAAAAAGGCATCTCAG+CGG + chr3_2:37991145-37991164 Msa0404870:CDS 45.0%
TGATATCCCGGTAGCATCAT+CGG - chr3_2:37991755-37991774 None:intergenic 45.0%
!!! TGCATCGGATTTTGAAGTGG+AGG - chr3_2:37991824-37991843 None:intergenic 45.0%
GGCATTCTCGGTAATTGCAT+CGG - chr3_2:37991839-37991858 None:intergenic 45.0%
TGGTGTCTGACAGGAAGAAA+CGG - chr3_2:37991873-37991892 None:intergenic 45.0%
TGGCTCGTTAATGTCTGGTT+TGG - chr3_2:37991893-37991912 None:intergenic 45.0%
GGAGCAATATGCTCGTTACA+TGG + chr3_2:37991970-37991989 Msa0404870:CDS 45.0%
ATTGGTCCACTGCTATTGCT+GGG - chr3_2:37992458-37992477 None:intergenic 45.0%
AATAGCAGTGGACCAATGAG+TGG + chr3_2:37992461-37992480 Msa0404870:CDS 45.0%
GTGGAGCTTCTATGGCAGAA+TGG + chr3_2:37990232-37990251 Msa0404870:CDS 50.0%
!! AATTTCCTATGTCGGCTCCG+AGG + chr3_2:37990521-37990540 Msa0404870:CDS 50.0%
GAGTGTTCGACGATGACAGT+TGG + chr3_2:37990718-37990737 Msa0404870:CDS 50.0%
GGGTATCAAGCAACGGTGTT+TGG + chr3_2:37990791-37990810 Msa0404870:CDS 50.0%
GATTTCCCATTCTCATGCCG+AGG - chr3_2:37990871-37990890 None:intergenic 50.0%
!! AAAAAGGCATCTCAGCGGTC+AGG + chr3_2:37991150-37991169 Msa0404870:CDS 50.0%
GATTATGCACTTCAGCAGCG+CGG - chr3_2:37991191-37991210 None:intergenic 50.0%
TAGGTGATGTGGATGGGATC+TGG + chr3_2:37991722-37991741 Msa0404870:intron 50.0%
CATGACACCGATGATGCTAC+CGG + chr3_2:37991745-37991764 Msa0404870:CDS 50.0%
ATGACACCGATGATGCTACC+GGG + chr3_2:37991746-37991765 Msa0404870:CDS 50.0%
GCAATTACCGAGAATGCCTC+TGG + chr3_2:37991841-37991860 Msa0404870:CDS 50.0%
GTCTGACAGGAAGAAACGGA+CGG - chr3_2:37991869-37991888 None:intergenic 50.0%
!! TGTCTGGTTTGGTGTCTGAC+AGG - chr3_2:37991882-37991901 None:intergenic 50.0%
GCATATTGCTCCGAAAGAGC+AGG - chr3_2:37991962-37991981 None:intergenic 50.0%
ATTCCACCCAGCAATAGCAG+TGG + chr3_2:37992449-37992468 Msa0404870:CDS 50.0%
CATTGGTCCACTGCTATTGC+TGG - chr3_2:37992459-37992478 None:intergenic 50.0%
TGATGCTGTGGGTGGCAAAA+TGG + chr3_2:37992499-37992518 Msa0404870:CDS 50.0%
GATGCTGTGGGTGGCAAAAT+GGG + chr3_2:37992500-37992519 Msa0404870:CDS 50.0%
CAGGCTGGACCATGAACTTG+TGG + chr3_2:37990213-37990232 Msa0404870:intron 55.0%
TGAAACCTCGGAGCCGACAT+AGG - chr3_2:37990529-37990548 None:intergenic 55.0%
CGATTTGTGTGGATCCGGCA+AGG + chr3_2:37990582-37990601 Msa0404870:CDS 55.0%
CGGAAGCAACCAAGTCCAAC+AGG + chr3_2:37990753-37990772 Msa0404870:CDS 55.0%
! GGTGGTTCGGGAAGTAGTCT+TGG + chr3_2:37990925-37990944 Msa0404870:CDS 55.0%
!! GACGGATCCAGAGGCATTCT+CGG - chr3_2:37991851-37991870 None:intergenic 55.0%
GAAGAAACGGACGGATCCAG+AGG - chr3_2:37991860-37991879 None:intergenic 55.0%
CTGTGGGTGGCAAAATGGGT+AGG + chr3_2:37992504-37992523 Msa0404870:CDS 55.0%
GGCATCTCAGCGGTCAGGTT+CGG + chr3_2:37991155-37991174 Msa0404870:CDS 60.0%
GGTCCACTGCTATTGCTGGG+TGG - chr3_2:37992455-37992474 None:intergenic 60.0%
! AGCGGTCAGGTTCGGCTCGT+AGG + chr3_2:37991163-37991182 Msa0404870:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 37989202 37993127 37989202 ID=Msa0404870;Name=Msa0404870
chr3_2 mRNA 37989202 37993127 37989202 ID=Msa0404870-mRNA-1;Parent=Msa0404870;Name=Msa0404870-mRNA-1;_AED=0.04;_eAED=0.04;_QI=199|1|1|1|0.85|0.75|8|574|524
chr3_2 exon 37989202 37989377 37989202 ID=Msa0404870-mRNA-1:exon:7557;Parent=Msa0404870-mRNA-1
chr3_2 exon 37990013 37990109 37990013 ID=Msa0404870-mRNA-1:exon:7558;Parent=Msa0404870-mRNA-1
chr3_2 exon 37990216 37991029 37990216 ID=Msa0404870-mRNA-1:exon:7559;Parent=Msa0404870-mRNA-1
chr3_2 exon 37991123 37991221 37991123 ID=Msa0404870-mRNA-1:exon:7560;Parent=Msa0404870-mRNA-1
chr3_2 exon 37991306 37991371 37991306 ID=Msa0404870-mRNA-1:exon:7561;Parent=Msa0404870-mRNA-1
chr3_2 exon 37991571 37991636 37991571 ID=Msa0404870-mRNA-1:exon:7562;Parent=Msa0404870-mRNA-1
chr3_2 exon 37991725 37992021 37991725 ID=Msa0404870-mRNA-1:exon:7563;Parent=Msa0404870-mRNA-1
chr3_2 exon 37992395 37993127 37992395 ID=Msa0404870-mRNA-1:exon:7564;Parent=Msa0404870-mRNA-1
chr3_2 five_prime_UTR 37989202 37989377 37989202 ID=Msa0404870-mRNA-1:five_prime_utr;Parent=Msa0404870-mRNA-1
chr3_2 five_prime_UTR 37990013 37990035 37990013 ID=Msa0404870-mRNA-1:five_prime_utr;Parent=Msa0404870-mRNA-1
chr3_2 CDS 37990036 37990109 37990036 ID=Msa0404870-mRNA-1:cds;Parent=Msa0404870-mRNA-1
chr3_2 CDS 37990216 37991029 37990216 ID=Msa0404870-mRNA-1:cds;Parent=Msa0404870-mRNA-1
chr3_2 CDS 37991123 37991221 37991123 ID=Msa0404870-mRNA-1:cds;Parent=Msa0404870-mRNA-1
chr3_2 CDS 37991306 37991371 37991306 ID=Msa0404870-mRNA-1:cds;Parent=Msa0404870-mRNA-1
chr3_2 CDS 37991571 37991636 37991571 ID=Msa0404870-mRNA-1:cds;Parent=Msa0404870-mRNA-1
chr3_2 CDS 37991725 37992021 37991725 ID=Msa0404870-mRNA-1:cds;Parent=Msa0404870-mRNA-1
chr3_2 CDS 37992395 37992553 37992395 ID=Msa0404870-mRNA-1:cds;Parent=Msa0404870-mRNA-1
chr3_2 three_prime_UTR 37992554 37993127 37992554 ID=Msa0404870-mRNA-1:three_prime_utr;Parent=Msa0404870-mRNA-1
Gene Sequence

>Msa0404870

ATGAACAACACCGTTCCTGATTGGAATTTTGGGAGTGATAGTTTTGTCACTAATCAAAAGAAGCAACCTATGGGGCTGGACCATGAACTTGTGGAGCTTCTATGGCAGAATGGTCATGTAGTATTGAATAGCCAAACAAATAAGAAACAAGTTCTGAATTCAAATACAATCAATTCAAGACAAGTTCATAAGAATCTTCAATCAACAACTTTAAGCAACTTGATTCAAGATGATGAAACTGTTTCATGGATCCAACAATACCCTATTGAGGATCCACTTGAACAAGAATTATGTTCAAACCTTTTATCTGAACTTCCACCTTGTAACGTCGAGTCTTTCAATTCGCAACCGACGAATACAAAACCGCCTTTTGTTCAGGAATTTCCTATGTCGGCTCCGAGGTTTCATCATCATGTTCCCGATTCATTGCAAAGAAACAACGATTTGTGTGGATCCGGCAAGGTTGTAAACTTTTCTCACTTTTCAAGACTTCCCAATGTTACTTTAGCATCTACAAACGGCGATGCAAATTTTAGAGACAAAATTACGGGTAATCTGTCACAATGTGATGTTAGAGAGTGTTCGACGATGACAGTTGGTTCGAGTTATTGCGGAAGCAACCAAGTCCAACAGGATCAAGATGTAAGCAGGGTATCAAGCAACGGTGTTTGGACTAATTTATCGACCGAGCCTGAACAAGTCAGAAATGATGTTCAGAAGACAATTCCTCGGCATGAGAATGGGAAATCGGAGATGTTGGAACCTGCTTTTACTTCATCTTCTGGTGGTTCGGGAAGTAGTCTTGGAAAAACTTGTTCCTTATCTACAAGAAGTCATGACAAAAAGAGGAAAGTGATGGATGTTGAAGATTCAGTGGAACAAAGCGAGGATACAGAACTTAAATCAGCCGTGAGGAAAAAGGCATCTCAGCGGTCAGGTTCGGCTCGTAGGAACCGCGCTGCTGAAGTGCATAATCTTTCAGAAAGGAGGCGAAGAGATAGAATTAATGAGAAGATGAAAGCATTACAACAACTCATACCTCACAGTAGTAAGACAGACAAAGCATCAATGTTAGAAGAGGCAATTGAATACTTGAAATCACTTCAGTTACAACTTCAGGTGATGTGGATGGGATCTGGCATGACACCGATGATGCTACCGGGATATCAGCACTATATGTCACAAATGGGTATGGGAATGACTACACCTTCGTTTCCTCCACTTCAAAATCCGATGCAATTACCGAGAATGCCTCTGGATCCGTCCGTTTCTTCCTGTCAGACACCAAACCAGACATTAACGAGCCAAAATCCTGTTTTAGGTGCCTTCAACTACCAAAATCAGATGCAAAATCCTGCTCTTTCGGAGCAATATGCTCGTTACATGGGCTATCATCTTATGCAAAATGCTTCTCAGCCAATGAATATGTACAGATATGGTCCCCAAGCTGTACAAAATAGTCAAACAATGATTCCACCCAGCAATAGCAGTGGACCAATGAGTGGAACAGCAAACATTAATGATGCTGTGGGTGGCAAAATGGGTAGGCCAACACATACTTCTCTATTGTCATAG
Protein sequence

>Msa0404870

MNNTVPDWNFGSDSFVTNQKKQPMGLDHELVELLWQNGHVVLNSQTNKKQVLNSNTINSRQVHKNLQSTTLSNLIQDDETVSWIQQYPIEDPLEQELCSNLLSELPPCNVESFNSQPTNTKPPFVQEFPMSAPRFHHHVPDSLQRNNDLCGSGKVVNFSHFSRLPNVTLASTNGDANFRDKITGNLSQCDVRECSTMTVGSSYCGSNQVQQDQDVSRVSSNGVWTNLSTEPEQVRNDVQKTIPRHENGKSEMLEPAFTSSSGGSGSSLGKTCSLSTRSHDKKRKVMDVEDSVEQSEDTELKSAVRKKASQRSGSARRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSKTDKASMLEEAIEYLKSLQLQLQVMWMGSGMTPMMLPGYQHYMSQMGMGMTTPSFPPLQNPMQLPRMPLDPSVSSCQTPNQTLTSQNPVLGAFNYQNQMQNPALSEQYARYMGYHLMQNASQPMNMYRYGPQAVQNSQTMIPPSNSSGPMSGTANINDAVGGKMGRPTHTSLLS*