AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0358710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0358710 MtrunA17_Chr3g0095391 95.551 472 17 1 1 472 1 468 0.0 928
Msa0358710 MtrunA17_Chr1g0182791 32.200 559 251 22 1 475 1 515 4.10e-51 182
Msa0358710 MtrunA17_Chr7g0262691 44.398 241 96 7 262 468 202 438 1.14e-41 155
Msa0358710 MtrunA17_Chr1g0193321 58.333 144 53 4 253 391 402 543 3.22e-35 140
Msa0358710 MtrunA17_Chr7g0271251 35.762 302 138 10 152 405 245 538 1.03e-28 120
Msa0358710 MtrunA17_Chr1g0153241 58.000 100 38 2 291 388 65 162 4.71e-27 110
Msa0358710 MtrunA17_Chr7g0270871 49.107 112 49 3 287 390 173 284 2.87e-23 101
Msa0358710 MtrunA17_Chr5g0402031 68.571 70 20 1 322 391 114 181 4.11e-22 97.8
Msa0358710 MtrunA17_Chr3g0095411 97.619 42 1 0 474 515 1 42 5.39e-21 85.9
Msa0358710 MtrunA17_Chr7g0231461 45.600 125 55 4 256 375 243 359 3.89e-20 93.6
Msa0358710 MtrunA17_Chr4g0074161 57.143 63 27 0 315 377 208 270 2.65e-17 84.0
Msa0358710 MtrunA17_Chr1g0190731 53.968 63 29 0 315 377 195 257 1.08e-15 78.6
Msa0358710 MtrunA17_Chr5g0393721 44.304 79 37 2 308 379 217 295 8.89e-14 72.4
Msa0358710 MtrunA17_Chr1g0207311 37.500 88 45 2 300 377 178 265 1.63e-12 68.2
Msa0358710 MtrunA17_Chr1g0152131 39.450 109 61 3 270 377 221 325 4.18e-12 68.2
Msa0358710 MtrunA17_Chr3g0131771 47.945 73 36 2 315 385 149 221 4.77e-12 67.4
Msa0358710 MtrunA17_Chr3g0134741 34.694 98 51 3 315 407 231 320 6.33e-12 67.0
Msa0358710 MtrunA17_Chr5g0421111 51.562 64 30 1 315 377 367 430 6.37e-12 68.2
Msa0358710 MtrunA17_Chr6g0484271 33.333 153 79 5 233 375 79 218 1.15e-11 65.5
Msa0358710 MtrunA17_Chr7g0234761 50.000 64 31 1 315 377 319 382 1.22e-11 67.0
Msa0358710 MtrunA17_Chr3g0144641 50.000 64 31 1 315 377 193 256 1.64e-11 66.2
Msa0358710 MtrunA17_Chr1g0152651 44.118 68 33 1 315 377 276 343 1.84e-11 65.9
Msa0358710 MtrunA17_Chr8g0385911 35.000 120 70 5 315 432 147 260 1.90e-11 65.5
Msa0358710 MtrunA17_Chr8g0339091 50.000 64 31 1 315 377 293 356 2.17e-11 66.2
Msa0358710 MtrunA17_Chr1g0174161 31.132 106 71 2 315 418 162 267 2.97e-11 64.7
Msa0358710 MtrunA17_Chr8g0365941 50.000 64 31 1 315 377 307 370 3.39e-11 65.5
Msa0358710 MtrunA17_Chr8g0363921 46.875 64 33 1 315 377 153 216 5.62e-11 63.5
Msa0358710 MtrunA17_Chr4g0035101 48.438 64 32 1 315 377 145 208 7.55e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0358710 AT2G43010.2 35.388 503 228 18 8 498 6 423 1.47e-59 203
Msa0358710 AT2G43010.1 35.248 505 228 19 8 498 6 425 1.44e-57 198
Msa0358710 AT2G43010.3 35.248 505 228 19 8 498 13 432 1.88e-57 197
Msa0358710 AT2G43010.5 35.446 505 227 20 8 498 48 467 4.23e-57 197
Msa0358710 AT2G43010.4 35.368 475 212 17 8 472 6 395 2.14e-54 189
Msa0358710 AT2G20180.4 36.842 437 193 17 1 410 1 381 8.41e-45 164
Msa0358710 AT2G20180.6 36.842 437 193 17 1 410 1 381 8.41e-45 164
Msa0358710 AT2G20180.2 36.842 437 193 17 1 410 1 381 8.41e-45 164
Msa0358710 AT2G20180.3 36.842 437 193 17 1 410 1 381 8.41e-45 164
Msa0358710 AT3G59060.3 44.144 333 115 14 195 497 146 437 8.70e-45 164
Msa0358710 AT3G59060.2 44.144 333 115 14 195 497 146 437 8.70e-45 164
Msa0358710 AT3G59060.4 44.144 333 115 14 195 497 146 437 8.70e-45 164
Msa0358710 AT3G59060.1 44.411 331 115 14 195 497 146 435 1.79e-44 163
Msa0358710 AT2G20180.8 35.176 398 181 16 1 377 1 342 5.11e-39 145
Msa0358710 AT2G20180.7 38.352 352 147 13 74 410 14 310 9.09e-38 144
Msa0358710 AT2G20180.1 38.352 352 147 13 74 410 14 310 9.09e-38 144
Msa0358710 AT2G20180.5 38.352 352 147 13 74 410 14 310 9.09e-38 144
Msa0358710 AT1G09530.3 33.256 430 204 20 19 392 18 420 4.03e-33 132
Msa0358710 AT1G09530.2 33.256 430 204 20 19 392 18 420 4.03e-33 132
Msa0358710 AT1G09530.5 33.256 430 204 20 19 392 18 420 4.03e-33 132
Msa0358710 AT1G09530.1 33.256 430 204 20 19 392 18 420 4.03e-33 132
Msa0358710 AT1G09530.4 33.256 430 204 20 19 392 18 420 4.03e-33 132
Msa0358710 AT1G09530.6 33.256 430 204 20 19 392 18 420 4.03e-33 132
Msa0358710 AT4G28800.1 28.753 473 221 17 27 463 19 411 3.85e-28 117
Msa0358710 AT4G28800.2 28.541 473 216 18 27 463 31 417 2.31e-26 112
Msa0358710 AT5G67110.1 48.529 136 48 3 254 387 48 163 3.11e-26 106
Msa0358710 AT4G28790.1 28.993 407 217 15 20 408 18 370 5.22e-25 107
Msa0358710 AT4G28815.2 40.217 184 75 8 301 473 53 212 5.60e-25 103
Msa0358710 AT4G36930.1 73.611 72 17 1 319 388 197 268 6.12e-25 107
Msa0358710 AT4G28815.1 42.391 184 71 10 301 473 129 288 1.38e-24 104
Msa0358710 AT2G46970.2 41.379 174 81 7 254 414 133 298 3.00e-24 105
Msa0358710 AT2G46970.3 41.379 174 81 7 254 414 142 307 3.61e-24 105
Msa0358710 AT2G46970.1 41.520 171 79 7 257 414 167 329 4.46e-24 105
Msa0358710 AT4G00050.2 53.271 107 39 3 273 375 68 167 2.37e-22 97.8
Msa0358710 AT4G00050.3 53.271 107 39 3 273 375 170 269 6.29e-22 98.2
Msa0358710 AT4G00050.1 53.271 107 39 3 273 375 170 269 6.86e-22 98.2
Msa0358710 AT2G24260.2 58.730 63 26 0 315 377 37 99 1.12e-18 86.3
Msa0358710 AT2G24260.1 58.730 63 26 0 315 377 140 202 4.93e-18 86.3
Msa0358710 AT4G28790.2 27.446 368 199 12 20 373 18 331 5.02e-18 85.9
Msa0358710 AT5G58010.1 54.054 74 31 1 304 377 93 163 6.11e-18 85.1
Msa0358710 AT4G30980.1 57.143 63 27 0 315 377 132 194 1.26e-17 84.3
Msa0358710 AT4G30980.2 57.143 63 27 0 315 377 180 242 3.60e-17 83.6
Msa0358710 AT3G62090.1 49.474 95 45 3 308 400 160 253 8.56e-17 82.4
Msa0358710 AT4G28811.1 36.992 246 123 6 248 474 295 527 1.08e-16 83.6
Msa0358710 AT3G62090.2 49.474 95 45 3 308 400 177 270 1.11e-16 82.0
Msa0358710 AT1G26260.3 33.333 165 92 5 260 406 103 267 1.10e-14 75.9
Msa0358710 AT1G26260.4 33.333 165 92 5 260 406 154 318 1.43e-14 75.9
Msa0358710 AT1G26260.1 33.333 165 92 5 260 406 154 318 1.43e-14 75.9
Msa0358710 AT1G26260.6 33.333 165 92 5 260 406 154 318 1.43e-14 75.9
Msa0358710 AT1G26260.2 33.333 165 92 5 260 406 154 318 1.43e-14 75.9
Msa0358710 AT1G26260.5 33.333 165 92 5 260 406 132 296 1.52e-14 75.9
Msa0358710 AT1G68240.1 38.710 124 67 4 315 432 63 183 1.15e-13 70.1
Msa0358710 AT5G61270.1 46.078 102 53 2 287 387 135 235 2.31e-13 72.0
Msa0358710 AT5G61270.2 46.078 102 53 2 287 387 47 147 2.46e-13 70.9
Msa0358710 AT5G61270.3 46.078 102 53 2 287 387 47 147 2.46e-13 70.9
Msa0358710 AT4G33880.1 35.652 115 57 4 296 403 247 351 4.45e-13 71.2
Msa0358710 AT5G43175.1 40.789 76 40 1 307 377 126 201 4.74e-13 68.9
Msa0358710 AT1G68240.2 39.091 110 61 3 315 418 63 172 4.86e-13 67.8
Msa0358710 AT1G02340.1 36.667 120 52 3 281 400 113 208 5.44e-13 70.1
Msa0358710 AT1G02340.2 36.667 120 52 3 281 400 106 201 6.83e-13 69.7
Msa0358710 AT5G50915.1 29.358 218 100 8 238 415 53 256 1.15e-12 68.9
Msa0358710 AT5G50915.2 29.358 218 100 8 238 415 53 256 1.15e-12 68.9
Msa0358710 AT2G14760.1 38.710 93 49 2 290 377 217 306 1.46e-12 69.3
Msa0358710 AT1G27740.1 36.449 107 59 3 291 391 148 251 1.69e-12 68.2
Msa0358710 AT5G50915.3 29.279 222 95 9 238 415 53 256 1.90e-12 68.2
Msa0358710 AT5G50915.4 29.279 222 95 9 238 415 53 256 1.90e-12 68.2
Msa0358710 AT1G68920.3 36.170 141 79 6 315 446 304 442 5.92e-12 68.6
Msa0358710 AT1G68920.1 36.170 141 79 6 315 446 305 443 5.98e-12 68.6
Msa0358710 AT1G68920.4 36.170 141 79 6 315 446 305 443 5.98e-12 68.6
Msa0358710 AT1G68920.2 36.170 141 79 6 315 446 305 443 5.98e-12 68.6
Msa0358710 AT3G23690.1 34.028 144 86 4 239 377 117 256 6.32e-12 67.8
Msa0358710 AT2G18300.3 30.808 198 113 7 274 448 129 325 8.32e-12 67.4
Msa0358710 AT2G18300.2 30.808 198 113 7 274 448 129 325 9.60e-12 67.0
Msa0358710 AT2G14760.3 42.647 68 34 1 315 377 252 319 1.34e-11 66.6
Msa0358710 AT4G34530.1 48.438 64 32 1 315 377 174 237 1.68e-11 66.2
Msa0358710 AT3G07340.2 39.216 102 43 3 292 377 225 323 1.86e-11 66.6
Msa0358710 AT3G07340.1 39.216 102 43 3 292 377 225 323 2.27e-11 66.6
Msa0358710 AT5G48560.2 50.000 64 31 1 315 377 303 366 3.93e-11 65.9
Msa0358710 AT5G67110.2 40.367 109 44 3 254 362 48 135 4.15e-11 61.6
Msa0358710 AT5G48560.1 50.000 64 31 1 315 377 303 366 4.64e-11 65.5
Msa0358710 AT4G36540.1 36.697 109 60 3 277 377 99 206 6.41e-11 63.9
Msa0358710 AT4G36540.2 36.697 109 60 3 277 377 99 206 6.54e-11 63.9
Msa0358710 AT1G10120.2 48.438 64 32 1 315 377 208 271 7.06e-11 64.3
Msa0358710 AT1G10120.1 48.438 64 32 1 315 377 208 271 7.06e-11 64.3
Msa0358710 AT2G18300.1 30.653 199 110 8 274 448 129 323 7.65e-11 63.9
Msa0358710 AT5G67110.3 37.500 136 41 4 254 387 48 141 7.80e-11 62.0

Find 135 sgRNAs with CRISPR-Local

Find 460 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAGATCATCTTAAAATTT+AGG 0.159860 3_1:-44223130 None:intergenic
ACCGTTCCTGATTGGAATTT+TGG 0.193756 3_1:+44220264 Msa0358710:CDS
GGCAAGTGTTCAAGGAAATA+AGG 0.207090 3_1:-44223326 None:intergenic
TTATATAACAATGAAGAAAT+TGG 0.215837 3_1:+44223250 Msa0358710:three_prime_UTR
AACAATGAAGAAATTGGTTT+TGG 0.267766 3_1:+44223256 Msa0358710:three_prime_UTR
TACTTCATCTTCTGGTGGTT+CGG 0.273371 3_1:+44221131 Msa0358710:CDS
GTTACTCCATAGGTTCTTCT+AGG 0.280860 3_1:-44222939 None:intergenic
GAACTTGTTTCTTATTTGTT+TGG 0.281722 3_1:-44220492 None:intergenic
TGATGCTGTGGGTGGCAAAA+TGG 0.294348 3_1:+44222718 Msa0358710:CDS
CATTGGTCCACTGCTATTGC+TGG 0.300560 3_1:-44222675 None:intergenic
TGTTCAAGTGGATCCTCAAT+AGG 0.303381 3_1:-44220622 None:intergenic
AGGCACCTAAAACAGGATTT+TGG 0.303664 3_1:-44222129 None:intergenic
TAAATCAGCCGTGAGGAAAA+AGG 0.304657 3_1:+44221353 Msa0358710:CDS
GAGTCTAAATGTGAAATAAA+AGG 0.312754 3_1:+44223203 Msa0358710:three_prime_UTR
ACATCATTTCTGACTTGTTC+AGG 0.332564 3_1:-44221051 None:intergenic
ATCACTTCAGTTACAACTTC+AGG 0.334793 3_1:+44221834 Msa0358710:CDS
AAGGTGGAAGTTCAGATAAA+AGG 0.339660 3_1:-44220660 None:intergenic
GATGCAAAATCCTGCTCTTT+CGG 0.342576 3_1:+44222168 Msa0358710:CDS
GGGTATCAAGCAACGGTGTT+TGG 0.343568 3_1:+44221010 Msa0358710:CDS
ATGAACTTGTGGAGCTTCTA+TGG 0.349007 3_1:+44220443 Msa0358710:CDS
CATCTTGATCCTGTTGGACT+TGG 0.357855 3_1:-44220981 None:intergenic
GTTTATAAATAGAGGCAATT+AGG 0.360186 3_1:+44223102 Msa0358710:three_prime_UTR
ACTTCATCTTCTGGTGGTTC+GGG 0.366507 3_1:+44221132 Msa0358710:CDS
AAGATGATGAAACTGTTTCA+TGG 0.378684 3_1:+44220587 Msa0358710:CDS
TTGAGTGTGTCCTTATGCTT+TGG 0.390026 3_1:-44219443 None:intergenic
GTTGTTTCTTTGCAATGAAT+CGG 0.393694 3_1:-44220779 None:intergenic
GAAAATATGTTTATAAATAG+AGG 0.394472 3_1:+44223094 Msa0358710:three_prime_UTR
GGCATCTCAGCGGTCAGGTT+CGG 0.395919 3_1:+44221374 Msa0358710:CDS
ATGTTTGCTGTTCCACTCAT+TGG 0.397921 3_1:-44222692 None:intergenic
TGCTTACATCTTGATCCTGT+TGG 0.402600 3_1:-44220987 None:intergenic
TTTGTTGCTGGTTACTCCAT+AGG 0.402807 3_1:-44222949 None:intergenic
GACGGATCCAGAGGCATTCT+CGG 0.403301 3_1:-44222067 None:intergenic
GCAAGTGTTCAAGGAAATAA+GGG 0.408689 3_1:-44223325 None:intergenic
GTCATGACTTCTTGTAGATA+AGG 0.410497 3_1:-44221178 None:intergenic
GGTGCAAATAGGTACTGGTT+TGG 0.413855 3_1:+44220221 Msa0358710:intron
TCAGCACTATATGTCACAAA+TGG 0.421098 3_1:+44221991 Msa0358710:CDS
TTGTTATATAATTTCAATGA+AGG 0.423411 3_1:-44223238 None:intergenic
ATAGAAGCTCCACAAGTTCA+TGG 0.431688 3_1:-44220441 None:intergenic
TAATATGAGAACAATATTAG+AGG 0.432266 3_1:-44222773 None:intergenic
TCTTATGCAAAATGCTTCTC+AGG 0.438287 3_1:+44222219 Msa0358710:CDS
TTGAAAGACTCGACGTTACA+AGG 0.440966 3_1:-44220679 None:intergenic
ACAATTCCTCGGCATGAGAA+TGG 0.443028 3_1:+44221081 Msa0358710:CDS
CTCACACTTTCCAAAGCATA+AGG 0.443353 3_1:+44219433 Msa0358710:five_prime_UTR
TGAACAACACCGTTCCTGAT+TGG 0.444912 3_1:+44220256 Msa0358710:CDS
TTGTTTCTTTGCAATGAATC+GGG 0.448535 3_1:-44220778 None:intergenic
CGGAAGCAACCAAGTCCAAC+AGG 0.451058 3_1:+44220972 Msa0358710:CDS
CCATATCTGTACATATTCAT+TGG 0.451704 3_1:-44222614 None:intergenic
GTAGATGCTAAAGTAACATT+GGG 0.457098 3_1:-44220853 None:intergenic
TGGCTCGTTAATGTCTGGTT+TGG 0.458380 3_1:-44222109 None:intergenic
TAGTTGAAGGCACCTAAAAC+AGG 0.459214 3_1:-44222136 None:intergenic
CTATATGTCACAAATGGGTA+TGG 0.459276 3_1:+44221997 Msa0358710:CDS
GGAGCAATATGCTCGTTACA+TGG 0.460185 3_1:+44222189 Msa0358710:CDS
TAATCAAAAGAAGCAACCTA+TGG 0.462757 3_1:+44220305 Msa0358710:CDS
GATCATCTTAAAATTTAGGT+TGG 0.466929 3_1:-44223126 None:intergenic
CAATTCCTCGGCATGAGAAT+GGG 0.468759 3_1:+44221082 Msa0358710:CDS
AGAAAAGTTTACAACCTTGC+CGG 0.469128 3_1:-44220815 None:intergenic
GTTCAAGTGGATCCTCAATA+GGG 0.473250 3_1:-44220621 None:intergenic
AACAGGATCAAGATGTAAGC+AGG 0.473432 3_1:+44220989 Msa0358710:CDS
TCGGCATGAGAATGGGAAAT+CGG 0.473920 3_1:+44221089 Msa0358710:CDS
GATCCTCAATAGGGTATTGT+TGG 0.475150 3_1:-44220612 None:intergenic
TTCTGTTAGGTGATGTGGAT+GGG 0.477428 3_1:+44221935 Msa0358710:intron
GAACATAATTCTTGTTCAAG+TGG 0.477770 3_1:-44220634 None:intergenic
TAGGTGATGTGGATGGGATC+TGG 0.479810 3_1:+44221941 Msa0358710:intron
AACAACGATTTGTGTGGATC+CGG 0.480481 3_1:+44220796 Msa0358710:CDS
ATAGGAAATTCCTGAACAAA+AGG 0.481459 3_1:-44220727 None:intergenic
GCAATTACCGAGAATGCCTC+TGG 0.483577 3_1:+44222060 Msa0358710:CDS
TGTTCAGGAATTTCCTATGT+CGG 0.485624 3_1:+44220732 Msa0358710:CDS
CCAATGAATATGTACAGATA+TGG 0.491789 3_1:+44222614 Msa0358710:CDS
TGTAGATGCTAAAGTAACAT+TGG 0.495901 3_1:-44220854 None:intergenic
CATGACACCGATGATGCTAC+CGG 0.496261 3_1:+44221964 Msa0358710:CDS
TTTCTGTTAGGTGATGTGGA+TGG 0.500303 3_1:+44221934 Msa0358710:intron
GATGCTGTGGGTGGCAAAAT+GGG 0.501876 3_1:+44222719 Msa0358710:CDS
GGTGGTTCGGGAAGTAGTCT+TGG 0.502929 3_1:+44221144 Msa0358710:CDS
TCACTCCCAAAATTCCAATC+AGG 0.503469 3_1:-44220270 None:intergenic
AATCAAAAGAAGCAACCTAT+GGG 0.506530 3_1:+44220306 Msa0358710:CDS
ATTTCTGACTTGTTCAGGCT+CGG 0.509459 3_1:-44221046 None:intergenic
ACATATATTTATAGTTGAGC+TGG 0.511215 3_1:-44222982 None:intergenic
GGAATTCCTAGAAGAACCTA+TGG 0.512827 3_1:+44222933 Msa0358710:three_prime_UTR
GAATGGGAAATCGGAGATGT+TGG 0.520509 3_1:+44221098 Msa0358710:CDS
ACTCATACCTCACAGTAGTA+AGG 0.524016 3_1:+44221569 Msa0358710:CDS
CAGCACTATATGTCACAAAT+GGG 0.528954 3_1:+44221992 Msa0358710:CDS
AGTGCATAATCTTTCAGAAA+GGG 0.530854 3_1:+44221419 Msa0358710:CDS
GACATATAGTGCTGATATCC+CGG 0.534372 3_1:-44221983 None:intergenic
GTTACTTTAGCATCTACAAA+CGG 0.535195 3_1:+44220859 Msa0358710:CDS
GTAGAAAGTAGCTGAAAGCT+TGG 0.535957 3_1:-44219517 None:intergenic
CAAAGCATCAATGTTAGAAG+AGG 0.538478 3_1:+44221795 Msa0358710:CDS
TGTCTGGTTTGGTGTCTGAC+AGG 0.541123 3_1:-44222098 None:intergenic
GGCATTCTCGGTAATTGCAT+CGG 0.543563 3_1:-44222055 None:intergenic
TGAAACCTCGGAGCCGACAT+AGG 0.544656 3_1:-44220745 None:intergenic
TGATATCCCGGTAGCATCAT+CGG 0.547358 3_1:-44221971 None:intergenic
GCATATTGCTCCGAAAGAGC+AGG 0.550353 3_1:-44222178 None:intergenic
TTACAGGTTAATTAGTCTAG+AGG 0.560592 3_1:+44222912 Msa0358710:three_prime_UTR
CAAAGAAACAACGATTTGTG+TGG 0.566041 3_1:+44220790 Msa0358710:CDS
GACAATAGAGAAGTATGTGT+TGG 0.566323 3_1:-44222746 None:intergenic
TGGTGTCTGACAGGAAGAAA+CGG 0.568009 3_1:-44222089 None:intergenic
ATTGGTCCACTGCTATTGCT+GGG 0.572900 3_1:-44222674 None:intergenic
CGATTTGTGTGGATCCGGCA+AGG 0.573793 3_1:+44220801 Msa0358710:CDS
GTGGAGCTTCTATGGCAGAA+TGG 0.575038 3_1:+44220451 Msa0358710:CDS
CATCAGCAAGTCAGAAACAA+AGG 0.580980 3_1:+44219539 Msa0358710:five_prime_UTR
AGCGGTCAGGTTCGGCTCGT+AGG 0.585796 3_1:+44221382 Msa0358710:CDS
CCAGAAGATGAAGTAAAAGC+AGG 0.586941 3_1:-44221123 None:intergenic
GATCCAACAATACCCTATTG+AGG 0.587994 3_1:+44220609 Msa0358710:CDS
AAGTGCATAATCTTTCAGAA+AGG 0.591388 3_1:+44221418 Msa0358710:CDS
TATATGTCACAAATGGGTAT+GGG 0.594345 3_1:+44221998 Msa0358710:CDS
CCCAAAATTCCAATCAGGAA+CGG 0.594898 3_1:-44220265 None:intergenic
ATGACACCGATGATGCTACC+GGG 0.598634 3_1:+44221965 Msa0358710:CDS
TTAAGATGATCTATTCGTTG+CGG 0.601252 3_1:+44223138 Msa0358710:three_prime_UTR
AGCAAACATTAATGATGCTG+TGG 0.601820 3_1:+44222706 Msa0358710:CDS
GATTTCCCATTCTCATGCCG+AGG 0.602580 3_1:-44221087 None:intergenic
CAGGCTGGACCATGAACTTG+TGG 0.607340 3_1:+44220432 Msa0358710:intron
GATGGATGTTGAAGATTCAG+TGG 0.609243 3_1:+44221215 Msa0358710:CDS
GAGCAATATGCTCGTTACAT+GGG 0.614005 3_1:+44222190 Msa0358710:CDS
GGAAATTCCTGAACAAAAGG+CGG 0.618190 3_1:-44220724 None:intergenic
CTGTGGGTGGCAAAATGGGT+AGG 0.622005 3_1:+44222723 Msa0358710:CDS
ATGTTCAGAAGACAATTCCT+CGG 0.630703 3_1:+44221070 Msa0358710:CDS
GAGTGTTCGACGATGACAGT+TGG 0.633825 3_1:+44220937 Msa0358710:CDS
GGAACATGATGATGAAACCT+CGG 0.639628 3_1:-44220757 None:intergenic
ATATTGAACACACACCCCAT+AGG 0.642122 3_1:-44220321 None:intergenic
ACAGGATCAAGATGTAAGCA+GGG 0.649737 3_1:+44220990 Msa0358710:CDS
AGATTCAGTGGAACAAAGCG+AGG 0.656069 3_1:+44221227 Msa0358710:CDS
GTAAGCAGGGTATCAAGCAA+CGG 0.657240 3_1:+44221003 Msa0358710:CDS
ACAGTTGGTTCGAGTTATTG+CGG 0.658618 3_1:+44220952 Msa0358710:CDS
GAAGAAACGGACGGATCCAG+AGG 0.660505 3_1:-44222076 None:intergenic
AACATTAATGATGCTGTGGG+TGG 0.661408 3_1:+44222710 Msa0358710:CDS
GTCTGACAGGAAGAAACGGA+CGG 0.668045 3_1:-44222085 None:intergenic
AATAGCAGTGGACCAATGAG+TGG 0.668226 3_1:+44222680 Msa0358710:CDS
GGTCCACTGCTATTGCTGGG+TGG 0.669356 3_1:-44222671 None:intergenic
ATTCCACCCAGCAATAGCAG+TGG 0.670400 3_1:+44222668 Msa0358710:CDS
AATTTCCTATGTCGGCTCCG+AGG 0.681257 3_1:+44220740 Msa0358710:CDS
ATCAAAAGAAGCAACCTATG+GGG 0.695787 3_1:+44220307 Msa0358710:CDS
GCAAACATTAATGATGCTGT+GGG 0.698935 3_1:+44222707 Msa0358710:CDS
GATTATGCACTTCAGCAGCG+CGG 0.709911 3_1:-44221407 None:intergenic
TGACAAACCTTACTACTGTG+AGG 0.713524 3_1:-44221576 None:intergenic
AAAGACTCGACGTTACAAGG+TGG 0.729579 3_1:-44220676 None:intergenic
CAGAACTTAAATCAGCCGTG+AGG 0.748263 3_1:+44221346 Msa0358710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGGAATAAAAAATTTAAA+GGG - chr3_1:44220047-44220066 None:intergenic 10.0%
!! AAAAGGAATAAAAAATTTAA+AGG - chr3_1:44220048-44220067 None:intergenic 10.0%
!!! GATTTTAATATTGATAAAAA+AGG - chr3_1:44220065-44220084 None:intergenic 10.0%
!! TATTTGATTATTCATTTAAA+TGG + chr3_1:44220101-44220120 Msa0358710:intron 10.0%
!! AGAATATCATTAATTTATAA+GGG - chr3_1:44222539-44222558 None:intergenic 10.0%
!! AAAGGAATAAAAAATTTAAA+GGG - chr3_1:44220047-44220066 None:intergenic 10.0%
!! AAAAGGAATAAAAAATTTAA+AGG - chr3_1:44220048-44220067 None:intergenic 10.0%
!!! GATTTTAATATTGATAAAAA+AGG - chr3_1:44220065-44220084 None:intergenic 10.0%
!! TATTTGATTATTCATTTAAA+TGG + chr3_1:44220101-44220120 Msa0358710:intron 10.0%
!! AGAATATCATTAATTTATAA+GGG - chr3_1:44222539-44222558 None:intergenic 10.0%
!! AATGTGAATGTTATAAATAA+TGG + chr3_1:44219627-44219646 Msa0358710:intron 15.0%
!!! TTCTTATTTTCTTCTTTTTT+AGG + chr3_1:44219745-44219764 Msa0358710:intron 15.0%
!!! AAACTAATTTTCTTTCATTT+TGG + chr3_1:44220200-44220219 Msa0358710:intron 15.0%
!!! AAATTTTAGAGACAAAATTA+CGG + chr3_1:44220888-44220907 Msa0358710:CDS 15.0%
!! TGAAAAACATCTAATTATAA+AGG - chr3_1:44221278-44221297 None:intergenic 15.0%
!!! ATTTTTTTGATTTTTCTGTT+AGG + chr3_1:44221922-44221941 Msa0358710:intron 15.0%
!! GAATATCATTAATTTATAAG+GGG - chr3_1:44222538-44222557 None:intergenic 15.0%
!! GAGAATATCATTAATTTATA+AGG - chr3_1:44222540-44222559 None:intergenic 15.0%
!! GAAAATATGTTTATAAATAG+AGG + chr3_1:44223094-44223113 Msa0358710:three_prime_UTR 15.0%
!! AATAGATCATCTTAAAATTT+AGG - chr3_1:44223133-44223152 None:intergenic 15.0%
!! TTGTTATATAATTTCAATGA+AGG - chr3_1:44223241-44223260 None:intergenic 15.0%
!! TTATATAACAATGAAGAAAT+TGG + chr3_1:44223250-44223269 Msa0358710:three_prime_UTR 15.0%
!! AATGTGAATGTTATAAATAA+TGG + chr3_1:44219627-44219646 Msa0358710:intron 15.0%
!!! TTCTTATTTTCTTCTTTTTT+AGG + chr3_1:44219745-44219764 Msa0358710:intron 15.0%
!!! AAACTAATTTTCTTTCATTT+TGG + chr3_1:44220200-44220219 Msa0358710:intron 15.0%
!!! AAATTTTAGAGACAAAATTA+CGG + chr3_1:44220888-44220907 Msa0358710:CDS 15.0%
!! TGAAAAACATCTAATTATAA+AGG - chr3_1:44221278-44221297 None:intergenic 15.0%
!!! ATTTTTTTGATTTTTCTGTT+AGG + chr3_1:44221922-44221941 Msa0358710:intron 15.0%
!! GAATATCATTAATTTATAAG+GGG - chr3_1:44222538-44222557 None:intergenic 15.0%
!! GAGAATATCATTAATTTATA+AGG - chr3_1:44222540-44222559 None:intergenic 15.0%
!! GAAAATATGTTTATAAATAG+AGG + chr3_1:44223094-44223113 Msa0358710:three_prime_UTR 15.0%
!! AATAGATCATCTTAAAATTT+AGG - chr3_1:44223133-44223152 None:intergenic 15.0%
!! TTGTTATATAATTTCAATGA+AGG - chr3_1:44223241-44223260 None:intergenic 15.0%
!! TTATATAACAATGAAGAAAT+TGG + chr3_1:44223250-44223269 Msa0358710:three_prime_UTR 15.0%
!! ATAACATTCACATTTAGATA+AGG - chr3_1:44219621-44219640 None:intergenic 20.0%
!! AACATTAAACACAACAAATT+AGG - chr3_1:44219832-44219851 None:intergenic 20.0%
!!! TATTTTATTCTTCTGCTTAA+TGG + chr3_1:44220135-44220154 Msa0358710:intron 20.0%
!!! AATTTTAGAGACAAAATTAC+GGG + chr3_1:44220889-44220908 Msa0358710:CDS 20.0%
!! AGGTAAAATTAATTTCCATA+GGG - chr3_1:44222571-44222590 None:intergenic 20.0%
!! AAGGTAAAATTAATTTCCAT+AGG - chr3_1:44222572-44222591 None:intergenic 20.0%
!!! ATTAATTTTACCTTGTATGT+TGG + chr3_1:44222578-44222597 Msa0358710:intron 20.0%
!! TAATATGAGAACAATATTAG+AGG - chr3_1:44222776-44222795 None:intergenic 20.0%
!!! TATACAAGTGACTTATTTTT+TGG + chr3_1:44223033-44223052 Msa0358710:three_prime_UTR 20.0%
!!! ATACAAGTGACTTATTTTTT+GGG + chr3_1:44223034-44223053 Msa0358710:three_prime_UTR 20.0%
!! ATAACATTCACATTTAGATA+AGG - chr3_1:44219621-44219640 None:intergenic 20.0%
!! AACATTAAACACAACAAATT+AGG - chr3_1:44219832-44219851 None:intergenic 20.0%
!!! TATTTTATTCTTCTGCTTAA+TGG + chr3_1:44220135-44220154 Msa0358710:intron 20.0%
!!! AATTTTAGAGACAAAATTAC+GGG + chr3_1:44220889-44220908 Msa0358710:CDS 20.0%
!! AGGTAAAATTAATTTCCATA+GGG - chr3_1:44222571-44222590 None:intergenic 20.0%
!! AAGGTAAAATTAATTTCCAT+AGG - chr3_1:44222572-44222591 None:intergenic 20.0%
!!! ATTAATTTTACCTTGTATGT+TGG + chr3_1:44222578-44222597 Msa0358710:intron 20.0%
!! TAATATGAGAACAATATTAG+AGG - chr3_1:44222776-44222795 None:intergenic 20.0%
!!! TATACAAGTGACTTATTTTT+TGG + chr3_1:44223033-44223052 Msa0358710:three_prime_UTR 20.0%
!!! ATACAAGTGACTTATTTTTT+GGG + chr3_1:44223034-44223053 Msa0358710:three_prime_UTR 20.0%
!! AAATCTATTTTGCTCAGTTT+AGG + chr3_1:44219575-44219594 Msa0358710:five_prime_UTR 25.0%
!! TTTTTATGATCTTTCTCTTC+TGG + chr3_1:44219867-44219886 Msa0358710:intron 25.0%
!! TTTTATGATCTTTCTCTTCT+GGG + chr3_1:44219868-44219887 Msa0358710:intron 25.0%
!! AGACTTGATTTTTCCAATTA+TGG + chr3_1:44219926-44219945 Msa0358710:intron 25.0%
!! GACTTGATTTTTCCAATTAT+GGG + chr3_1:44219927-44219946 Msa0358710:intron 25.0%
!! GAACTTGTTTCTTATTTGTT+TGG - chr3_1:44220495-44220514 None:intergenic 25.0%
!! TTCACTGAGTTATGATTTTA+CGG + chr3_1:44221306-44221325 Msa0358710:intron 25.0%
!! ATTTTACGGTTTGTGTTAAT+AGG + chr3_1:44221320-44221339 Msa0358710:intron 25.0%
!!! AACCGTGTTTTATTTTTTGT+AGG + chr3_1:44221602-44221621 Msa0358710:intron 25.0%
! TGCCTACAAAAAATAAAACA+CGG - chr3_1:44221607-44221626 None:intergenic 25.0%
!!! TGCTAGTGGTTAATTTTTTA+AGG + chr3_1:44221629-44221648 Msa0358710:intron 25.0%
!!! ACAAAAAATTTGTTAGTAGC+AGG + chr3_1:44221654-44221673 Msa0358710:intron 25.0%
!!! ATGCAAGAGATTATTTTGTA+TGG - chr3_1:44221875-44221894 None:intergenic 25.0%
! AAAAATTCTTTAGCAATGTG+AGG - chr3_1:44221908-44221927 None:intergenic 25.0%
! AATAAGCTGAAAACAACTTA+TGG - chr3_1:44222342-44222361 None:intergenic 25.0%
! ACTGTTTACATGTAAGATAT+AGG - chr3_1:44222399-44222418 None:intergenic 25.0%
!! TTAAGTTAGTTTATCCAAAC+AGG + chr3_1:44222494-44222513 Msa0358710:intron 25.0%
!! TAAGTTAGTTTATCCAAACA+GGG + chr3_1:44222495-44222514 Msa0358710:intron 25.0%
!! TTTTAAATTTAGACCCTGTT+TGG - chr3_1:44222511-44222530 None:intergenic 25.0%
!!! TTACTTGTCATTTTGTTTAC+AGG + chr3_1:44222896-44222915 Msa0358710:three_prime_UTR 25.0%
! ACATATATTTATAGTTGAGC+TGG - chr3_1:44222985-44223004 None:intergenic 25.0%
! GTTTATAAATAGAGGCAATT+AGG + chr3_1:44223102-44223121 Msa0358710:three_prime_UTR 25.0%
! GATCATCTTAAAATTTAGGT+TGG - chr3_1:44223129-44223148 None:intergenic 25.0%
! GAGTCTAAATGTGAAATAAA+AGG + chr3_1:44223203-44223222 Msa0358710:three_prime_UTR 25.0%
!!! AACAATGAAGAAATTGGTTT+TGG + chr3_1:44223256-44223275 Msa0358710:three_prime_UTR 25.0%
!! AAATCTATTTTGCTCAGTTT+AGG + chr3_1:44219575-44219594 Msa0358710:five_prime_UTR 25.0%
!! TTTTTATGATCTTTCTCTTC+TGG + chr3_1:44219867-44219886 Msa0358710:intron 25.0%
!! TTTTATGATCTTTCTCTTCT+GGG + chr3_1:44219868-44219887 Msa0358710:intron 25.0%
!! AGACTTGATTTTTCCAATTA+TGG + chr3_1:44219926-44219945 Msa0358710:intron 25.0%
!! GACTTGATTTTTCCAATTAT+GGG + chr3_1:44219927-44219946 Msa0358710:intron 25.0%
!! GAACTTGTTTCTTATTTGTT+TGG - chr3_1:44220495-44220514 None:intergenic 25.0%
!! TTCACTGAGTTATGATTTTA+CGG + chr3_1:44221306-44221325 Msa0358710:intron 25.0%
!! ATTTTACGGTTTGTGTTAAT+AGG + chr3_1:44221320-44221339 Msa0358710:intron 25.0%
!!! AACCGTGTTTTATTTTTTGT+AGG + chr3_1:44221602-44221621 Msa0358710:intron 25.0%
! TGCCTACAAAAAATAAAACA+CGG - chr3_1:44221607-44221626 None:intergenic 25.0%
!!! TGCTAGTGGTTAATTTTTTA+AGG + chr3_1:44221629-44221648 Msa0358710:intron 25.0%
!!! ACAAAAAATTTGTTAGTAGC+AGG + chr3_1:44221654-44221673 Msa0358710:intron 25.0%
!!! ATGCAAGAGATTATTTTGTA+TGG - chr3_1:44221875-44221894 None:intergenic 25.0%
! AAAAATTCTTTAGCAATGTG+AGG - chr3_1:44221908-44221927 None:intergenic 25.0%
! AATAAGCTGAAAACAACTTA+TGG - chr3_1:44222342-44222361 None:intergenic 25.0%
! ACTGTTTACATGTAAGATAT+AGG - chr3_1:44222399-44222418 None:intergenic 25.0%
!! TTAAGTTAGTTTATCCAAAC+AGG + chr3_1:44222494-44222513 Msa0358710:intron 25.0%
!! TAAGTTAGTTTATCCAAACA+GGG + chr3_1:44222495-44222514 Msa0358710:intron 25.0%
!! TTTTAAATTTAGACCCTGTT+TGG - chr3_1:44222511-44222530 None:intergenic 25.0%
!!! TTACTTGTCATTTTGTTTAC+AGG + chr3_1:44222896-44222915 Msa0358710:three_prime_UTR 25.0%
! ACATATATTTATAGTTGAGC+TGG - chr3_1:44222985-44223004 None:intergenic 25.0%
! GTTTATAAATAGAGGCAATT+AGG + chr3_1:44223102-44223121 Msa0358710:three_prime_UTR 25.0%
! GATCATCTTAAAATTTAGGT+TGG - chr3_1:44223129-44223148 None:intergenic 25.0%
! GAGTCTAAATGTGAAATAAA+AGG + chr3_1:44223203-44223222 Msa0358710:three_prime_UTR 25.0%
!!! AACAATGAAGAAATTGGTTT+TGG + chr3_1:44223256-44223275 Msa0358710:three_prime_UTR 25.0%
AATTTCAAGAGTCCCATAAT+TGG - chr3_1:44219942-44219961 None:intergenic 30.0%
AATTATGGGACTCTTGAAAT+TGG + chr3_1:44219941-44219960 Msa0358710:intron 30.0%
ACTCTTGAAATTGGAATTCT+TGG + chr3_1:44219950-44219969 Msa0358710:intron 30.0%
TTAAGAGTTTAGATCATGTG+TGG - chr3_1:44220023-44220042 None:intergenic 30.0%
GGAGTCAAATTCTACTTAAA+AGG + chr3_1:44220156-44220175 Msa0358710:intron 30.0%
!! TCTTTCATTTTGGTGCAAAT+AGG + chr3_1:44220210-44220229 Msa0358710:intron 30.0%
TAATCAAAAGAAGCAACCTA+TGG + chr3_1:44220305-44220324 Msa0358710:CDS 30.0%
AATCAAAAGAAGCAACCTAT+GGG + chr3_1:44220306-44220325 Msa0358710:CDS 30.0%
AACCATGTGTTTAACATTAC+AGG + chr3_1:44220413-44220432 Msa0358710:intron 30.0%
AAGATGATGAAACTGTTTCA+TGG + chr3_1:44220587-44220606 Msa0358710:CDS 30.0%
GAACATAATTCTTGTTCAAG+TGG - chr3_1:44220637-44220656 None:intergenic 30.0%
ATAGGAAATTCCTGAACAAA+AGG - chr3_1:44220730-44220749 None:intergenic 30.0%
! TTGTTTCTTTGCAATGAATC+GGG - chr3_1:44220781-44220800 None:intergenic 30.0%
!! GTTGTTTCTTTGCAATGAAT+CGG - chr3_1:44220782-44220801 None:intergenic 30.0%
GTAGATGCTAAAGTAACATT+GGG - chr3_1:44220856-44220875 None:intergenic 30.0%
TGTAGATGCTAAAGTAACAT+TGG - chr3_1:44220857-44220876 None:intergenic 30.0%
! GTTACTTTAGCATCTACAAA+CGG + chr3_1:44220859-44220878 Msa0358710:CDS 30.0%
AAGTGCATAATCTTTCAGAA+AGG + chr3_1:44221418-44221437 Msa0358710:CDS 30.0%
AGTGCATAATCTTTCAGAAA+GGG + chr3_1:44221419-44221438 Msa0358710:CDS 30.0%
ATAATCTTTCAGAAAGGGTA+AGG + chr3_1:44221424-44221443 Msa0358710:intron 30.0%
TAATCTTTCAGAAAGGGTAA+GGG + chr3_1:44221425-44221444 Msa0358710:intron 30.0%
!! TTATTGGTTTATTGATGCAG+AGG + chr3_1:44221505-44221524 Msa0358710:intron 30.0%
ATTAAATTGACGCGAATTCA+GGG - chr3_1:44221687-44221706 None:intergenic 30.0%
GCGATTAAATCATACAACAT+GGG - chr3_1:44221733-44221752 None:intergenic 30.0%
TGCGATTAAATCATACAACA+TGG - chr3_1:44221734-44221753 None:intergenic 30.0%
TATATGTCACAAATGGGTAT+GGG + chr3_1:44221998-44222017 Msa0358710:CDS 30.0%
AGACTATTTAGGAGATCTTA+TGG + chr3_1:44222296-44222315 Msa0358710:intron 30.0%
AAACTATCATGAAGAACTTG+TGG - chr3_1:44222366-44222385 None:intergenic 30.0%
! TATTCTCATGTTTTACCCTA+TGG + chr3_1:44222553-44222572 Msa0358710:intron 30.0%
CCATATCTGTACATATTCAT+TGG - chr3_1:44222617-44222636 None:intergenic 30.0%
CCAATGAATATGTACAGATA+TGG + chr3_1:44222614-44222633 Msa0358710:CDS 30.0%
! TTGACTATTTTGTACAGCTT+GGG - chr3_1:44222642-44222661 None:intergenic 30.0%
! TTTGACTATTTTGTACAGCT+TGG - chr3_1:44222643-44222662 None:intergenic 30.0%
! TTACAGGTTAATTAGTCTAG+AGG + chr3_1:44222912-44222931 Msa0358710:three_prime_UTR 30.0%
TTAAGATGATCTATTCGTTG+CGG + chr3_1:44223138-44223157 Msa0358710:three_prime_UTR 30.0%
AATTTCAAGAGTCCCATAAT+TGG - chr3_1:44219942-44219961 None:intergenic 30.0%
AATTATGGGACTCTTGAAAT+TGG + chr3_1:44219941-44219960 Msa0358710:intron 30.0%
ACTCTTGAAATTGGAATTCT+TGG + chr3_1:44219950-44219969 Msa0358710:intron 30.0%
TTAAGAGTTTAGATCATGTG+TGG - chr3_1:44220023-44220042 None:intergenic 30.0%
GGAGTCAAATTCTACTTAAA+AGG + chr3_1:44220156-44220175 Msa0358710:intron 30.0%
!! TCTTTCATTTTGGTGCAAAT+AGG + chr3_1:44220210-44220229 Msa0358710:intron 30.0%
TAATCAAAAGAAGCAACCTA+TGG + chr3_1:44220305-44220324 Msa0358710:CDS 30.0%
AATCAAAAGAAGCAACCTAT+GGG + chr3_1:44220306-44220325 Msa0358710:CDS 30.0%
AACCATGTGTTTAACATTAC+AGG + chr3_1:44220413-44220432 Msa0358710:intron 30.0%
AAGATGATGAAACTGTTTCA+TGG + chr3_1:44220587-44220606 Msa0358710:CDS 30.0%
GAACATAATTCTTGTTCAAG+TGG - chr3_1:44220637-44220656 None:intergenic 30.0%
ATAGGAAATTCCTGAACAAA+AGG - chr3_1:44220730-44220749 None:intergenic 30.0%
! TTGTTTCTTTGCAATGAATC+GGG - chr3_1:44220781-44220800 None:intergenic 30.0%
!! GTTGTTTCTTTGCAATGAAT+CGG - chr3_1:44220782-44220801 None:intergenic 30.0%
GTAGATGCTAAAGTAACATT+GGG - chr3_1:44220856-44220875 None:intergenic 30.0%
TGTAGATGCTAAAGTAACAT+TGG - chr3_1:44220857-44220876 None:intergenic 30.0%
! GTTACTTTAGCATCTACAAA+CGG + chr3_1:44220859-44220878 Msa0358710:CDS 30.0%
AAGTGCATAATCTTTCAGAA+AGG + chr3_1:44221418-44221437 Msa0358710:CDS 30.0%
AGTGCATAATCTTTCAGAAA+GGG + chr3_1:44221419-44221438 Msa0358710:CDS 30.0%
ATAATCTTTCAGAAAGGGTA+AGG + chr3_1:44221424-44221443 Msa0358710:intron 30.0%
TAATCTTTCAGAAAGGGTAA+GGG + chr3_1:44221425-44221444 Msa0358710:intron 30.0%
!! TTATTGGTTTATTGATGCAG+AGG + chr3_1:44221505-44221524 Msa0358710:intron 30.0%
ATTAAATTGACGCGAATTCA+GGG - chr3_1:44221687-44221706 None:intergenic 30.0%
GCGATTAAATCATACAACAT+GGG - chr3_1:44221733-44221752 None:intergenic 30.0%
TGCGATTAAATCATACAACA+TGG - chr3_1:44221734-44221753 None:intergenic 30.0%
TATATGTCACAAATGGGTAT+GGG + chr3_1:44221998-44222017 Msa0358710:CDS 30.0%
AGACTATTTAGGAGATCTTA+TGG + chr3_1:44222296-44222315 Msa0358710:intron 30.0%
AAACTATCATGAAGAACTTG+TGG - chr3_1:44222366-44222385 None:intergenic 30.0%
! TATTCTCATGTTTTACCCTA+TGG + chr3_1:44222553-44222572 Msa0358710:intron 30.0%
CCATATCTGTACATATTCAT+TGG - chr3_1:44222617-44222636 None:intergenic 30.0%
CCAATGAATATGTACAGATA+TGG + chr3_1:44222614-44222633 Msa0358710:CDS 30.0%
! TTGACTATTTTGTACAGCTT+GGG - chr3_1:44222642-44222661 None:intergenic 30.0%
! TTTGACTATTTTGTACAGCT+TGG - chr3_1:44222643-44222662 None:intergenic 30.0%
! TTACAGGTTAATTAGTCTAG+AGG + chr3_1:44222912-44222931 Msa0358710:three_prime_UTR 30.0%
TTAAGATGATCTATTCGTTG+CGG + chr3_1:44223138-44223157 Msa0358710:three_prime_UTR 30.0%
AGAAAAAGCAGGAACAAACA+AGG + chr3_1:44219484-44219503 Msa0358710:five_prime_UTR 35.0%
!! ATTTTGGTGCAAATAGGTAC+TGG + chr3_1:44220216-44220235 Msa0358710:intron 35.0%
ATCAAAAGAAGCAACCTATG+GGG + chr3_1:44220307-44220326 Msa0358710:CDS 35.0%
AGCCTGTAATGTTAAACACA+TGG - chr3_1:44220418-44220437 None:intergenic 35.0%
ATGTGTTTAACATTACAGGC+TGG + chr3_1:44220417-44220436 Msa0358710:intron 35.0%
AAGGTGGAAGTTCAGATAAA+AGG - chr3_1:44220663-44220682 None:intergenic 35.0%
TGTTCAGGAATTTCCTATGT+CGG + chr3_1:44220732-44220751 Msa0358710:CDS 35.0%
CAAAGAAACAACGATTTGTG+TGG + chr3_1:44220790-44220809 Msa0358710:CDS 35.0%
AGAAAAGTTTACAACCTTGC+CGG - chr3_1:44220818-44220837 None:intergenic 35.0%
!! ACATCATTTCTGACTTGTTC+AGG - chr3_1:44221054-44221073 None:intergenic 35.0%
ATGTTCAGAAGACAATTCCT+CGG + chr3_1:44221070-44221089 Msa0358710:CDS 35.0%
GTCATGACTTCTTGTAGATA+AGG - chr3_1:44221181-44221200 None:intergenic 35.0%
CAAGAAGTCATGACAAAAAG+AGG + chr3_1:44221187-44221206 Msa0358710:CDS 35.0%
TGACAAAAAGAGGAAAGTGA+TGG + chr3_1:44221197-44221216 Msa0358710:CDS 35.0%
!! TCGCTTACAAGAAGTGTTAT+TGG + chr3_1:44221489-44221508 Msa0358710:intron 35.0%
! TTTTTGTAGGCAATTGCTAG+TGG + chr3_1:44221615-44221634 Msa0358710:intron 35.0%
GATTAAATTGACGCGAATTC+AGG - chr3_1:44221688-44221707 None:intergenic 35.0%
GTTGTATGATTTAATCGCAG+TGG + chr3_1:44221735-44221754 Msa0358710:intron 35.0%
! CAAAGCATCAATGTTAGAAG+AGG + chr3_1:44221795-44221814 Msa0358710:CDS 35.0%
ATCACTTCAGTTACAACTTC+AGG + chr3_1:44221834-44221853 Msa0358710:CDS 35.0%
! GATTTTTCTGTTAGGTGATG+TGG + chr3_1:44221930-44221949 Msa0358710:intron 35.0%
TCAGCACTATATGTCACAAA+TGG + chr3_1:44221991-44222010 Msa0358710:CDS 35.0%
CAGCACTATATGTCACAAAT+GGG + chr3_1:44221992-44222011 Msa0358710:CDS 35.0%
CTATATGTCACAAATGGGTA+TGG + chr3_1:44221997-44222016 Msa0358710:CDS 35.0%
!! AATTGCATCGGATTTTGAAG+TGG - chr3_1:44222046-44222065 None:intergenic 35.0%
!! CATCTGATTTTGGTAGTTGA+AGG - chr3_1:44222152-44222171 None:intergenic 35.0%
! CAGGATTTTGCATCTGATTT+TGG - chr3_1:44222162-44222181 None:intergenic 35.0%
TCTTATGCAAAATGCTTCTC+AGG + chr3_1:44222219-44222238 Msa0358710:CDS 35.0%
AAAATGCTTCTCAGGTACTT+AGG + chr3_1:44222227-44222246 Msa0358710:intron 35.0%
! TCAGGTACTTAGGATTTGTT+TGG + chr3_1:44222237-44222256 Msa0358710:intron 35.0%
AAACACCTGAGAGACTATTT+AGG + chr3_1:44222285-44222304 Msa0358710:intron 35.0%
CAAAATAGTGCCAACATACA+AGG - chr3_1:44222591-44222610 None:intergenic 35.0%
! TGACTATTTTGTACAGCTTG+GGG - chr3_1:44222641-44222660 None:intergenic 35.0%
AGCAAACATTAATGATGCTG+TGG + chr3_1:44222706-44222725 Msa0358710:CDS 35.0%
GCAAACATTAATGATGCTGT+GGG + chr3_1:44222707-44222726 Msa0358710:CDS 35.0%
! GACAATAGAGAAGTATGTGT+TGG - chr3_1:44222749-44222768 None:intergenic 35.0%
!! GGCAAACATATTTTTGTTGC+TGG - chr3_1:44222964-44222983 None:intergenic 35.0%
GCAAGTGTTCAAGGAAATAA+GGG - chr3_1:44223328-44223347 None:intergenic 35.0%
AGAAAAAGCAGGAACAAACA+AGG + chr3_1:44219484-44219503 Msa0358710:five_prime_UTR 35.0%
!! ATTTTGGTGCAAATAGGTAC+TGG + chr3_1:44220216-44220235 Msa0358710:intron 35.0%
ATCAAAAGAAGCAACCTATG+GGG + chr3_1:44220307-44220326 Msa0358710:CDS 35.0%
AGCCTGTAATGTTAAACACA+TGG - chr3_1:44220418-44220437 None:intergenic 35.0%
ATGTGTTTAACATTACAGGC+TGG + chr3_1:44220417-44220436 Msa0358710:intron 35.0%
AAGGTGGAAGTTCAGATAAA+AGG - chr3_1:44220663-44220682 None:intergenic 35.0%
TGTTCAGGAATTTCCTATGT+CGG + chr3_1:44220732-44220751 Msa0358710:CDS 35.0%
CAAAGAAACAACGATTTGTG+TGG + chr3_1:44220790-44220809 Msa0358710:CDS 35.0%
AGAAAAGTTTACAACCTTGC+CGG - chr3_1:44220818-44220837 None:intergenic 35.0%
!! ACATCATTTCTGACTTGTTC+AGG - chr3_1:44221054-44221073 None:intergenic 35.0%
ATGTTCAGAAGACAATTCCT+CGG + chr3_1:44221070-44221089 Msa0358710:CDS 35.0%
GTCATGACTTCTTGTAGATA+AGG - chr3_1:44221181-44221200 None:intergenic 35.0%
CAAGAAGTCATGACAAAAAG+AGG + chr3_1:44221187-44221206 Msa0358710:CDS 35.0%
TGACAAAAAGAGGAAAGTGA+TGG + chr3_1:44221197-44221216 Msa0358710:CDS 35.0%
!! TCGCTTACAAGAAGTGTTAT+TGG + chr3_1:44221489-44221508 Msa0358710:intron 35.0%
! TTTTTGTAGGCAATTGCTAG+TGG + chr3_1:44221615-44221634 Msa0358710:intron 35.0%
GATTAAATTGACGCGAATTC+AGG - chr3_1:44221688-44221707 None:intergenic 35.0%
GTTGTATGATTTAATCGCAG+TGG + chr3_1:44221735-44221754 Msa0358710:intron 35.0%
! CAAAGCATCAATGTTAGAAG+AGG + chr3_1:44221795-44221814 Msa0358710:CDS 35.0%
ATCACTTCAGTTACAACTTC+AGG + chr3_1:44221834-44221853 Msa0358710:CDS 35.0%
! GATTTTTCTGTTAGGTGATG+TGG + chr3_1:44221930-44221949 Msa0358710:intron 35.0%
TCAGCACTATATGTCACAAA+TGG + chr3_1:44221991-44222010 Msa0358710:CDS 35.0%
CAGCACTATATGTCACAAAT+GGG + chr3_1:44221992-44222011 Msa0358710:CDS 35.0%
CTATATGTCACAAATGGGTA+TGG + chr3_1:44221997-44222016 Msa0358710:CDS 35.0%
!! AATTGCATCGGATTTTGAAG+TGG - chr3_1:44222046-44222065 None:intergenic 35.0%
!! CATCTGATTTTGGTAGTTGA+AGG - chr3_1:44222152-44222171 None:intergenic 35.0%
! CAGGATTTTGCATCTGATTT+TGG - chr3_1:44222162-44222181 None:intergenic 35.0%
TCTTATGCAAAATGCTTCTC+AGG + chr3_1:44222219-44222238 Msa0358710:CDS 35.0%
AAAATGCTTCTCAGGTACTT+AGG + chr3_1:44222227-44222246 Msa0358710:intron 35.0%
! TCAGGTACTTAGGATTTGTT+TGG + chr3_1:44222237-44222256 Msa0358710:intron 35.0%
AAACACCTGAGAGACTATTT+AGG + chr3_1:44222285-44222304 Msa0358710:intron 35.0%
CAAAATAGTGCCAACATACA+AGG - chr3_1:44222591-44222610 None:intergenic 35.0%
! TGACTATTTTGTACAGCTTG+GGG - chr3_1:44222641-44222660 None:intergenic 35.0%
AGCAAACATTAATGATGCTG+TGG + chr3_1:44222706-44222725 Msa0358710:CDS 35.0%
GCAAACATTAATGATGCTGT+GGG + chr3_1:44222707-44222726 Msa0358710:CDS 35.0%
! GACAATAGAGAAGTATGTGT+TGG - chr3_1:44222749-44222768 None:intergenic 35.0%
!! GGCAAACATATTTTTGTTGC+TGG - chr3_1:44222964-44222983 None:intergenic 35.0%
GCAAGTGTTCAAGGAAATAA+GGG - chr3_1:44223328-44223347 None:intergenic 35.0%
CTCACACTTTCCAAAGCATA+AGG + chr3_1:44219433-44219452 Msa0358710:five_prime_UTR 40.0%
TTGAGTGTGTCCTTATGCTT+TGG - chr3_1:44219446-44219465 None:intergenic 40.0%
!!! CCTGCTTTTTCTTCTGTGTT+TGG - chr3_1:44219476-44219495 None:intergenic 40.0%
CCAAACACAGAAGAAAAAGC+AGG + chr3_1:44219473-44219492 Msa0358710:five_prime_UTR 40.0%
GTAGAAAGTAGCTGAAAGCT+TGG - chr3_1:44219520-44219539 None:intergenic 40.0%
CATCAGCAAGTCAGAAACAA+AGG + chr3_1:44219539-44219558 Msa0358710:five_prime_UTR 40.0%
! ACCGTTCCTGATTGGAATTT+TGG + chr3_1:44220264-44220283 Msa0358710:CDS 40.0%
CCCAAAATTCCAATCAGGAA+CGG - chr3_1:44220268-44220287 None:intergenic 40.0%
! CCGTTCCTGATTGGAATTTT+GGG + chr3_1:44220265-44220284 Msa0358710:CDS 40.0%
TCACTCCCAAAATTCCAATC+AGG - chr3_1:44220273-44220292 None:intergenic 40.0%
ATATTGAACACACACCCCAT+AGG - chr3_1:44220324-44220343 None:intergenic 40.0%
ATAGAAGCTCCACAAGTTCA+TGG - chr3_1:44220444-44220463 None:intergenic 40.0%
ATGAACTTGTGGAGCTTCTA+TGG + chr3_1:44220443-44220462 Msa0358710:CDS 40.0%
GATCCAACAATACCCTATTG+AGG + chr3_1:44220609-44220628 Msa0358710:CDS 40.0%
!! GATCCTCAATAGGGTATTGT+TGG - chr3_1:44220615-44220634 None:intergenic 40.0%
GTTCAAGTGGATCCTCAATA+GGG - chr3_1:44220624-44220643 None:intergenic 40.0%
TGTTCAAGTGGATCCTCAAT+AGG - chr3_1:44220625-44220644 None:intergenic 40.0%
TTGAAAGACTCGACGTTACA+AGG - chr3_1:44220682-44220701 None:intergenic 40.0%
!! AAAGGCGGTTTTGTATTCGT+CGG - chr3_1:44220712-44220731 None:intergenic 40.0%
! TACAAAACCGCCTTTTGTTC+AGG + chr3_1:44220717-44220736 Msa0358710:CDS 40.0%
GGAAATTCCTGAACAAAAGG+CGG - chr3_1:44220727-44220746 None:intergenic 40.0%
! GGAACATGATGATGAAACCT+CGG - chr3_1:44220760-44220779 None:intergenic 40.0%
AACAACGATTTGTGTGGATC+CGG + chr3_1:44220796-44220815 Msa0358710:CDS 40.0%
!! ACAGTTGGTTCGAGTTATTG+CGG + chr3_1:44220952-44220971 Msa0358710:CDS 40.0%
TGCTTACATCTTGATCCTGT+TGG - chr3_1:44220990-44221009 None:intergenic 40.0%
AACAGGATCAAGATGTAAGC+AGG + chr3_1:44220989-44221008 Msa0358710:CDS 40.0%
ACAGGATCAAGATGTAAGCA+GGG + chr3_1:44220990-44221009 Msa0358710:CDS 40.0%
!! ATTTCTGACTTGTTCAGGCT+CGG - chr3_1:44221049-44221068 None:intergenic 40.0%
CCAGAAGATGAAGTAAAAGC+AGG - chr3_1:44221126-44221145 None:intergenic 40.0%
!! CCTGCTTTTACTTCATCTTC+TGG + chr3_1:44221123-44221142 Msa0358710:CDS 40.0%
! GCTTTTACTTCATCTTCTGG+TGG + chr3_1:44221126-44221145 Msa0358710:CDS 40.0%
TACTTCATCTTCTGGTGGTT+CGG + chr3_1:44221131-44221150 Msa0358710:CDS 40.0%
GATGGATGTTGAAGATTCAG+TGG + chr3_1:44221215-44221234 Msa0358710:CDS 40.0%
AGGTAAAAAGATAGAGTGCG+CGG - chr3_1:44221258-44221277 None:intergenic 40.0%
TAAATCAGCCGTGAGGAAAA+AGG + chr3_1:44221353-44221372 Msa0358710:CDS 40.0%
ACTCATACCTCACAGTAGTA+AGG + chr3_1:44221569-44221588 Msa0358710:CDS 40.0%
TGACAAACCTTACTACTGTG+AGG - chr3_1:44221579-44221598 None:intergenic 40.0%
TTTCTGTTAGGTGATGTGGA+TGG + chr3_1:44221934-44221953 Msa0358710:intron 40.0%
TTCTGTTAGGTGATGTGGAT+GGG + chr3_1:44221935-44221954 Msa0358710:intron 40.0%
!! GACATATAGTGCTGATATCC+CGG - chr3_1:44221986-44222005 None:intergenic 40.0%
!!! TTTTGAAGTGGAGGAAACGA+AGG - chr3_1:44222034-44222053 None:intergenic 40.0%
!!! GATTTTGGCTCGTTAATGTC+TGG - chr3_1:44222117-44222136 None:intergenic 40.0%
! ACGAGCCAAAATCCTGTTTT+AGG + chr3_1:44222124-44222143 Msa0358710:CDS 40.0%
! AGGCACCTAAAACAGGATTT+TGG - chr3_1:44222132-44222151 None:intergenic 40.0%
!! TAGTTGAAGGCACCTAAAAC+AGG - chr3_1:44222139-44222158 None:intergenic 40.0%
GATGCAAAATCCTGCTCTTT+CGG + chr3_1:44222168-44222187 Msa0358710:CDS 40.0%
GAGCAATATGCTCGTTACAT+GGG + chr3_1:44222190-44222209 Msa0358710:CDS 40.0%
GATCTCCTAAATAGTCTCTC+AGG - chr3_1:44222293-44222312 None:intergenic 40.0%
!! ATGTTTGCTGTTCCACTCAT+TGG - chr3_1:44222695-44222714 None:intergenic 40.0%
AACATTAATGATGCTGTGGG+TGG + chr3_1:44222710-44222729 Msa0358710:CDS 40.0%
GGAATTCCTAGAAGAACCTA+TGG + chr3_1:44222933-44222952 Msa0358710:three_prime_UTR 40.0%
GTTACTCCATAGGTTCTTCT+AGG - chr3_1:44222942-44222961 None:intergenic 40.0%
! TTTGTTGCTGGTTACTCCAT+AGG - chr3_1:44222952-44222971 None:intergenic 40.0%
GGCAAGTGTTCAAGGAAATA+AGG - chr3_1:44223329-44223348 None:intergenic 40.0%
CTCACACTTTCCAAAGCATA+AGG + chr3_1:44219433-44219452 Msa0358710:five_prime_UTR 40.0%
TTGAGTGTGTCCTTATGCTT+TGG - chr3_1:44219446-44219465 None:intergenic 40.0%
!!! CCTGCTTTTTCTTCTGTGTT+TGG - chr3_1:44219476-44219495 None:intergenic 40.0%
CCAAACACAGAAGAAAAAGC+AGG + chr3_1:44219473-44219492 Msa0358710:five_prime_UTR 40.0%
GTAGAAAGTAGCTGAAAGCT+TGG - chr3_1:44219520-44219539 None:intergenic 40.0%
CATCAGCAAGTCAGAAACAA+AGG + chr3_1:44219539-44219558 Msa0358710:five_prime_UTR 40.0%
! ACCGTTCCTGATTGGAATTT+TGG + chr3_1:44220264-44220283 Msa0358710:CDS 40.0%
CCCAAAATTCCAATCAGGAA+CGG - chr3_1:44220268-44220287 None:intergenic 40.0%
! CCGTTCCTGATTGGAATTTT+GGG + chr3_1:44220265-44220284 Msa0358710:CDS 40.0%
TCACTCCCAAAATTCCAATC+AGG - chr3_1:44220273-44220292 None:intergenic 40.0%
ATATTGAACACACACCCCAT+AGG - chr3_1:44220324-44220343 None:intergenic 40.0%
ATAGAAGCTCCACAAGTTCA+TGG - chr3_1:44220444-44220463 None:intergenic 40.0%
ATGAACTTGTGGAGCTTCTA+TGG + chr3_1:44220443-44220462 Msa0358710:CDS 40.0%
GATCCAACAATACCCTATTG+AGG + chr3_1:44220609-44220628 Msa0358710:CDS 40.0%
!! GATCCTCAATAGGGTATTGT+TGG - chr3_1:44220615-44220634 None:intergenic 40.0%
GTTCAAGTGGATCCTCAATA+GGG - chr3_1:44220624-44220643 None:intergenic 40.0%
TGTTCAAGTGGATCCTCAAT+AGG - chr3_1:44220625-44220644 None:intergenic 40.0%
TTGAAAGACTCGACGTTACA+AGG - chr3_1:44220682-44220701 None:intergenic 40.0%
!! AAAGGCGGTTTTGTATTCGT+CGG - chr3_1:44220712-44220731 None:intergenic 40.0%
! TACAAAACCGCCTTTTGTTC+AGG + chr3_1:44220717-44220736 Msa0358710:CDS 40.0%
GGAAATTCCTGAACAAAAGG+CGG - chr3_1:44220727-44220746 None:intergenic 40.0%
! GGAACATGATGATGAAACCT+CGG - chr3_1:44220760-44220779 None:intergenic 40.0%
AACAACGATTTGTGTGGATC+CGG + chr3_1:44220796-44220815 Msa0358710:CDS 40.0%
!! ACAGTTGGTTCGAGTTATTG+CGG + chr3_1:44220952-44220971 Msa0358710:CDS 40.0%
TGCTTACATCTTGATCCTGT+TGG - chr3_1:44220990-44221009 None:intergenic 40.0%
AACAGGATCAAGATGTAAGC+AGG + chr3_1:44220989-44221008 Msa0358710:CDS 40.0%
ACAGGATCAAGATGTAAGCA+GGG + chr3_1:44220990-44221009 Msa0358710:CDS 40.0%
!! ATTTCTGACTTGTTCAGGCT+CGG - chr3_1:44221049-44221068 None:intergenic 40.0%
CCAGAAGATGAAGTAAAAGC+AGG - chr3_1:44221126-44221145 None:intergenic 40.0%
!! CCTGCTTTTACTTCATCTTC+TGG + chr3_1:44221123-44221142 Msa0358710:CDS 40.0%
! GCTTTTACTTCATCTTCTGG+TGG + chr3_1:44221126-44221145 Msa0358710:CDS 40.0%
TACTTCATCTTCTGGTGGTT+CGG + chr3_1:44221131-44221150 Msa0358710:CDS 40.0%
GATGGATGTTGAAGATTCAG+TGG + chr3_1:44221215-44221234 Msa0358710:CDS 40.0%
AGGTAAAAAGATAGAGTGCG+CGG - chr3_1:44221258-44221277 None:intergenic 40.0%
TAAATCAGCCGTGAGGAAAA+AGG + chr3_1:44221353-44221372 Msa0358710:CDS 40.0%
ACTCATACCTCACAGTAGTA+AGG + chr3_1:44221569-44221588 Msa0358710:CDS 40.0%
TGACAAACCTTACTACTGTG+AGG - chr3_1:44221579-44221598 None:intergenic 40.0%
TTTCTGTTAGGTGATGTGGA+TGG + chr3_1:44221934-44221953 Msa0358710:intron 40.0%
TTCTGTTAGGTGATGTGGAT+GGG + chr3_1:44221935-44221954 Msa0358710:intron 40.0%
!! GACATATAGTGCTGATATCC+CGG - chr3_1:44221986-44222005 None:intergenic 40.0%
!!! TTTTGAAGTGGAGGAAACGA+AGG - chr3_1:44222034-44222053 None:intergenic 40.0%
!!! GATTTTGGCTCGTTAATGTC+TGG - chr3_1:44222117-44222136 None:intergenic 40.0%
! ACGAGCCAAAATCCTGTTTT+AGG + chr3_1:44222124-44222143 Msa0358710:CDS 40.0%
! AGGCACCTAAAACAGGATTT+TGG - chr3_1:44222132-44222151 None:intergenic 40.0%
!! TAGTTGAAGGCACCTAAAAC+AGG - chr3_1:44222139-44222158 None:intergenic 40.0%
GATGCAAAATCCTGCTCTTT+CGG + chr3_1:44222168-44222187 Msa0358710:CDS 40.0%
GAGCAATATGCTCGTTACAT+GGG + chr3_1:44222190-44222209 Msa0358710:CDS 40.0%
GATCTCCTAAATAGTCTCTC+AGG - chr3_1:44222293-44222312 None:intergenic 40.0%
!! ATGTTTGCTGTTCCACTCAT+TGG - chr3_1:44222695-44222714 None:intergenic 40.0%
AACATTAATGATGCTGTGGG+TGG + chr3_1:44222710-44222729 Msa0358710:CDS 40.0%
GGAATTCCTAGAAGAACCTA+TGG + chr3_1:44222933-44222952 Msa0358710:three_prime_UTR 40.0%
GTTACTCCATAGGTTCTTCT+AGG - chr3_1:44222942-44222961 None:intergenic 40.0%
! TTTGTTGCTGGTTACTCCAT+AGG - chr3_1:44222952-44222971 None:intergenic 40.0%
GGCAAGTGTTCAAGGAAATA+AGG - chr3_1:44223329-44223348 None:intergenic 40.0%
!! GGTGCAAATAGGTACTGGTT+TGG + chr3_1:44220221-44220240 Msa0358710:intron 45.0%
TGAACAACACCGTTCCTGAT+TGG + chr3_1:44220256-44220275 Msa0358710:CDS 45.0%
AAAGACTCGACGTTACAAGG+TGG - chr3_1:44220679-44220698 None:intergenic 45.0%
CATCTTGATCCTGTTGGACT+TGG - chr3_1:44220984-44221003 None:intergenic 45.0%
! GTAAGCAGGGTATCAAGCAA+CGG + chr3_1:44221003-44221022 Msa0358710:CDS 45.0%
ACAATTCCTCGGCATGAGAA+TGG + chr3_1:44221081-44221100 Msa0358710:CDS 45.0%
CAATTCCTCGGCATGAGAAT+GGG + chr3_1:44221082-44221101 Msa0358710:CDS 45.0%
TCGGCATGAGAATGGGAAAT+CGG + chr3_1:44221089-44221108 Msa0358710:CDS 45.0%
GAATGGGAAATCGGAGATGT+TGG + chr3_1:44221098-44221117 Msa0358710:CDS 45.0%
ACTTCATCTTCTGGTGGTTC+GGG + chr3_1:44221132-44221151 Msa0358710:CDS 45.0%
AGATTCAGTGGAACAAAGCG+AGG + chr3_1:44221227-44221246 Msa0358710:CDS 45.0%
CAGAACTTAAATCAGCCGTG+AGG + chr3_1:44221346-44221365 Msa0358710:CDS 45.0%
! CTGAGATGCCTTTTTCCTCA+CGG - chr3_1:44221364-44221383 None:intergenic 45.0%
!! TGAGGAAAAAGGCATCTCAG+CGG + chr3_1:44221364-44221383 Msa0358710:CDS 45.0%
TGATATCCCGGTAGCATCAT+CGG - chr3_1:44221974-44221993 None:intergenic 45.0%
!!! TGCATCGGATTTTGAAGTGG+AGG - chr3_1:44222043-44222062 None:intergenic 45.0%
GGCATTCTCGGTAATTGCAT+CGG - chr3_1:44222058-44222077 None:intergenic 45.0%
TGGTGTCTGACAGGAAGAAA+CGG - chr3_1:44222092-44222111 None:intergenic 45.0%
TGGCTCGTTAATGTCTGGTT+TGG - chr3_1:44222112-44222131 None:intergenic 45.0%
GGAGCAATATGCTCGTTACA+TGG + chr3_1:44222189-44222208 Msa0358710:CDS 45.0%
ATTGGTCCACTGCTATTGCT+GGG - chr3_1:44222677-44222696 None:intergenic 45.0%
AATAGCAGTGGACCAATGAG+TGG + chr3_1:44222680-44222699 Msa0358710:CDS 45.0%
!! GGTGCAAATAGGTACTGGTT+TGG + chr3_1:44220221-44220240 Msa0358710:intron 45.0%
TGAACAACACCGTTCCTGAT+TGG + chr3_1:44220256-44220275 Msa0358710:CDS 45.0%
AAAGACTCGACGTTACAAGG+TGG - chr3_1:44220679-44220698 None:intergenic 45.0%
CATCTTGATCCTGTTGGACT+TGG - chr3_1:44220984-44221003 None:intergenic 45.0%
! GTAAGCAGGGTATCAAGCAA+CGG + chr3_1:44221003-44221022 Msa0358710:CDS 45.0%
ACAATTCCTCGGCATGAGAA+TGG + chr3_1:44221081-44221100 Msa0358710:CDS 45.0%
CAATTCCTCGGCATGAGAAT+GGG + chr3_1:44221082-44221101 Msa0358710:CDS 45.0%
TCGGCATGAGAATGGGAAAT+CGG + chr3_1:44221089-44221108 Msa0358710:CDS 45.0%
GAATGGGAAATCGGAGATGT+TGG + chr3_1:44221098-44221117 Msa0358710:CDS 45.0%
ACTTCATCTTCTGGTGGTTC+GGG + chr3_1:44221132-44221151 Msa0358710:CDS 45.0%
AGATTCAGTGGAACAAAGCG+AGG + chr3_1:44221227-44221246 Msa0358710:CDS 45.0%
CAGAACTTAAATCAGCCGTG+AGG + chr3_1:44221346-44221365 Msa0358710:CDS 45.0%
! CTGAGATGCCTTTTTCCTCA+CGG - chr3_1:44221364-44221383 None:intergenic 45.0%
!! TGAGGAAAAAGGCATCTCAG+CGG + chr3_1:44221364-44221383 Msa0358710:CDS 45.0%
TGATATCCCGGTAGCATCAT+CGG - chr3_1:44221974-44221993 None:intergenic 45.0%
!!! TGCATCGGATTTTGAAGTGG+AGG - chr3_1:44222043-44222062 None:intergenic 45.0%
GGCATTCTCGGTAATTGCAT+CGG - chr3_1:44222058-44222077 None:intergenic 45.0%
TGGTGTCTGACAGGAAGAAA+CGG - chr3_1:44222092-44222111 None:intergenic 45.0%
TGGCTCGTTAATGTCTGGTT+TGG - chr3_1:44222112-44222131 None:intergenic 45.0%
GGAGCAATATGCTCGTTACA+TGG + chr3_1:44222189-44222208 Msa0358710:CDS 45.0%
ATTGGTCCACTGCTATTGCT+GGG - chr3_1:44222677-44222696 None:intergenic 45.0%
AATAGCAGTGGACCAATGAG+TGG + chr3_1:44222680-44222699 Msa0358710:CDS 45.0%
GTGGAGCTTCTATGGCAGAA+TGG + chr3_1:44220451-44220470 Msa0358710:CDS 50.0%
!! AATTTCCTATGTCGGCTCCG+AGG + chr3_1:44220740-44220759 Msa0358710:CDS 50.0%
GAGTGTTCGACGATGACAGT+TGG + chr3_1:44220937-44220956 Msa0358710:CDS 50.0%
GGGTATCAAGCAACGGTGTT+TGG + chr3_1:44221010-44221029 Msa0358710:CDS 50.0%
GATTTCCCATTCTCATGCCG+AGG - chr3_1:44221090-44221109 None:intergenic 50.0%
!! AAAAAGGCATCTCAGCGGTC+AGG + chr3_1:44221369-44221388 Msa0358710:CDS 50.0%
GATTATGCACTTCAGCAGCG+CGG - chr3_1:44221410-44221429 None:intergenic 50.0%
TAGGTGATGTGGATGGGATC+TGG + chr3_1:44221941-44221960 Msa0358710:intron 50.0%
CATGACACCGATGATGCTAC+CGG + chr3_1:44221964-44221983 Msa0358710:CDS 50.0%
ATGACACCGATGATGCTACC+GGG + chr3_1:44221965-44221984 Msa0358710:CDS 50.0%
GCAATTACCGAGAATGCCTC+TGG + chr3_1:44222060-44222079 Msa0358710:CDS 50.0%
GTCTGACAGGAAGAAACGGA+CGG - chr3_1:44222088-44222107 None:intergenic 50.0%
!! TGTCTGGTTTGGTGTCTGAC+AGG - chr3_1:44222101-44222120 None:intergenic 50.0%
GCATATTGCTCCGAAAGAGC+AGG - chr3_1:44222181-44222200 None:intergenic 50.0%
ATTCCACCCAGCAATAGCAG+TGG + chr3_1:44222668-44222687 Msa0358710:CDS 50.0%
CATTGGTCCACTGCTATTGC+TGG - chr3_1:44222678-44222697 None:intergenic 50.0%
TGATGCTGTGGGTGGCAAAA+TGG + chr3_1:44222718-44222737 Msa0358710:CDS 50.0%
GATGCTGTGGGTGGCAAAAT+GGG + chr3_1:44222719-44222738 Msa0358710:CDS 50.0%
GTGGAGCTTCTATGGCAGAA+TGG + chr3_1:44220451-44220470 Msa0358710:CDS 50.0%
!! AATTTCCTATGTCGGCTCCG+AGG + chr3_1:44220740-44220759 Msa0358710:CDS 50.0%
GAGTGTTCGACGATGACAGT+TGG + chr3_1:44220937-44220956 Msa0358710:CDS 50.0%
GGGTATCAAGCAACGGTGTT+TGG + chr3_1:44221010-44221029 Msa0358710:CDS 50.0%
GATTTCCCATTCTCATGCCG+AGG - chr3_1:44221090-44221109 None:intergenic 50.0%
!! AAAAAGGCATCTCAGCGGTC+AGG + chr3_1:44221369-44221388 Msa0358710:CDS 50.0%
GATTATGCACTTCAGCAGCG+CGG - chr3_1:44221410-44221429 None:intergenic 50.0%
TAGGTGATGTGGATGGGATC+TGG + chr3_1:44221941-44221960 Msa0358710:intron 50.0%
CATGACACCGATGATGCTAC+CGG + chr3_1:44221964-44221983 Msa0358710:CDS 50.0%
ATGACACCGATGATGCTACC+GGG + chr3_1:44221965-44221984 Msa0358710:CDS 50.0%
GCAATTACCGAGAATGCCTC+TGG + chr3_1:44222060-44222079 Msa0358710:CDS 50.0%
GTCTGACAGGAAGAAACGGA+CGG - chr3_1:44222088-44222107 None:intergenic 50.0%
!! TGTCTGGTTTGGTGTCTGAC+AGG - chr3_1:44222101-44222120 None:intergenic 50.0%
GCATATTGCTCCGAAAGAGC+AGG - chr3_1:44222181-44222200 None:intergenic 50.0%
ATTCCACCCAGCAATAGCAG+TGG + chr3_1:44222668-44222687 Msa0358710:CDS 50.0%
CATTGGTCCACTGCTATTGC+TGG - chr3_1:44222678-44222697 None:intergenic 50.0%
TGATGCTGTGGGTGGCAAAA+TGG + chr3_1:44222718-44222737 Msa0358710:CDS 50.0%
GATGCTGTGGGTGGCAAAAT+GGG + chr3_1:44222719-44222738 Msa0358710:CDS 50.0%
CAGGCTGGACCATGAACTTG+TGG + chr3_1:44220432-44220451 Msa0358710:intron 55.0%
TGAAACCTCGGAGCCGACAT+AGG - chr3_1:44220748-44220767 None:intergenic 55.0%
CGATTTGTGTGGATCCGGCA+AGG + chr3_1:44220801-44220820 Msa0358710:CDS 55.0%
CGGAAGCAACCAAGTCCAAC+AGG + chr3_1:44220972-44220991 Msa0358710:CDS 55.0%
! GGTGGTTCGGGAAGTAGTCT+TGG + chr3_1:44221144-44221163 Msa0358710:CDS 55.0%
!! GACGGATCCAGAGGCATTCT+CGG - chr3_1:44222070-44222089 None:intergenic 55.0%
GAAGAAACGGACGGATCCAG+AGG - chr3_1:44222079-44222098 None:intergenic 55.0%
CTGTGGGTGGCAAAATGGGT+AGG + chr3_1:44222723-44222742 Msa0358710:CDS 55.0%
CAGGCTGGACCATGAACTTG+TGG + chr3_1:44220432-44220451 Msa0358710:intron 55.0%
TGAAACCTCGGAGCCGACAT+AGG - chr3_1:44220748-44220767 None:intergenic 55.0%
CGATTTGTGTGGATCCGGCA+AGG + chr3_1:44220801-44220820 Msa0358710:CDS 55.0%
CGGAAGCAACCAAGTCCAAC+AGG + chr3_1:44220972-44220991 Msa0358710:CDS 55.0%
! GGTGGTTCGGGAAGTAGTCT+TGG + chr3_1:44221144-44221163 Msa0358710:CDS 55.0%
!! GACGGATCCAGAGGCATTCT+CGG - chr3_1:44222070-44222089 None:intergenic 55.0%
GAAGAAACGGACGGATCCAG+AGG - chr3_1:44222079-44222098 None:intergenic 55.0%
CTGTGGGTGGCAAAATGGGT+AGG + chr3_1:44222723-44222742 Msa0358710:CDS 55.0%
GGCATCTCAGCGGTCAGGTT+CGG + chr3_1:44221374-44221393 Msa0358710:CDS 60.0%
GGTCCACTGCTATTGCTGGG+TGG - chr3_1:44222674-44222693 None:intergenic 60.0%
GGCATCTCAGCGGTCAGGTT+CGG + chr3_1:44221374-44221393 Msa0358710:CDS 60.0%
GGTCCACTGCTATTGCTGGG+TGG - chr3_1:44222674-44222693 None:intergenic 60.0%
! AGCGGTCAGGTTCGGCTCGT+AGG + chr3_1:44221382-44221401 Msa0358710:CDS 65.0%
! AGCGGTCAGGTTCGGCTCGT+AGG + chr3_1:44221382-44221401 Msa0358710:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 44219421 44223353 44219421 ID=Msa0358710;Name=Msa0358710
chr3_1 mRNA 44219421 44223353 44219421 ID=Msa0358710-mRNA-1;Parent=Msa0358710;Name=Msa0358710-mRNA-1;_AED=0.04;_eAED=0.04;_QI=199|1|1|1|0.85|0.75|8|581|524
chr3_1 exon 44219421 44219596 44219421 ID=Msa0358710-mRNA-1:exon:7832;Parent=Msa0358710-mRNA-1
chr3_1 exon 44220232 44220328 44220232 ID=Msa0358710-mRNA-1:exon:7833;Parent=Msa0358710-mRNA-1
chr3_1 exon 44220435 44221248 44220435 ID=Msa0358710-mRNA-1:exon:7834;Parent=Msa0358710-mRNA-1
chr3_1 exon 44221342 44221440 44221342 ID=Msa0358710-mRNA-1:exon:7835;Parent=Msa0358710-mRNA-1
chr3_1 exon 44221525 44221590 44221525 ID=Msa0358710-mRNA-1:exon:7836;Parent=Msa0358710-mRNA-1
chr3_1 exon 44221790 44221855 44221790 ID=Msa0358710-mRNA-1:exon:7837;Parent=Msa0358710-mRNA-1
chr3_1 exon 44221944 44222240 44221944 ID=Msa0358710-mRNA-1:exon:7838;Parent=Msa0358710-mRNA-1
chr3_1 exon 44222614 44223353 44222614 ID=Msa0358710-mRNA-1:exon:7839;Parent=Msa0358710-mRNA-1
chr3_1 five_prime_UTR 44219421 44219596 44219421 ID=Msa0358710-mRNA-1:five_prime_utr;Parent=Msa0358710-mRNA-1
chr3_1 five_prime_UTR 44220232 44220254 44220232 ID=Msa0358710-mRNA-1:five_prime_utr;Parent=Msa0358710-mRNA-1
chr3_1 CDS 44220255 44220328 44220255 ID=Msa0358710-mRNA-1:cds;Parent=Msa0358710-mRNA-1
chr3_1 CDS 44220435 44221248 44220435 ID=Msa0358710-mRNA-1:cds;Parent=Msa0358710-mRNA-1
chr3_1 CDS 44221342 44221440 44221342 ID=Msa0358710-mRNA-1:cds;Parent=Msa0358710-mRNA-1
chr3_1 CDS 44221525 44221590 44221525 ID=Msa0358710-mRNA-1:cds;Parent=Msa0358710-mRNA-1
chr3_1 CDS 44221790 44221855 44221790 ID=Msa0358710-mRNA-1:cds;Parent=Msa0358710-mRNA-1
chr3_1 CDS 44221944 44222240 44221944 ID=Msa0358710-mRNA-1:cds;Parent=Msa0358710-mRNA-1
chr3_1 CDS 44222614 44222772 44222614 ID=Msa0358710-mRNA-1:cds;Parent=Msa0358710-mRNA-1
chr3_1 three_prime_UTR 44222773 44223353 44222773 ID=Msa0358710-mRNA-1:three_prime_utr;Parent=Msa0358710-mRNA-1
Gene Sequence

>Msa0358710

ATGAACAACACCGTTCCTGATTGGAATTTTGGGAGTGATAGTTTTGTCACTAATCAAAAGAAGCAACCTATGGGGCTGGACCATGAACTTGTGGAGCTTCTATGGCAGAATGGTCATGTAGTATTGAATAGCCAAACAAATAAGAAACAAGTTCTGAATTCAAATACAATCAATTCAAGACAAGTTCATAAGAATCTTCAATCAACAACTTTAAGCAACTTGATTCAAGATGATGAAACTGTTTCATGGATCCAACAATACCCTATTGAGGATCCACTTGAACAAGAATTATGTTCAAACCTTTTATCTGAACTTCCACCTTGTAACGTCGAGTCTTTCAATTCGCAACCGACGAATACAAAACCGCCTTTTGTTCAGGAATTTCCTATGTCGGCTCCGAGGTTTCATCATCATGTTCCCGATTCATTGCAAAGAAACAACGATTTGTGTGGATCCGGCAAGGTTGTAAACTTTTCTCACTTTTCAAGACTTCCCAATGTTACTTTAGCATCTACAAACGGCGATGCAAATTTTAGAGACAAAATTACGGGTAATCTGTCACAATGTGATGTTAGAGAGTGTTCGACGATGACAGTTGGTTCGAGTTATTGCGGAAGCAACCAAGTCCAACAGGATCAAGATGTAAGCAGGGTATCAAGCAACGGTGTTTGGACTAATTTATCGACCGAGCCTGAACAAGTCAGAAATGATGTTCAGAAGACAATTCCTCGGCATGAGAATGGGAAATCGGAGATGTTGGAACCTGCTTTTACTTCATCTTCTGGTGGTTCGGGAAGTAGTCTTGGAAAAACTTGTTCCTTATCTACAAGAAGTCATGACAAAAAGAGGAAAGTGATGGATGTTGAAGATTCAGTGGAACAAAGCGAGGATACAGAACTTAAATCAGCCGTGAGGAAAAAGGCATCTCAGCGGTCAGGTTCGGCTCGTAGGAACCGCGCTGCTGAAGTGCATAATCTTTCAGAAAGGAGGCGAAGAGATAGAATTAATGAGAAGATGAAAGCATTACAACAACTCATACCTCACAGTAGTAAGACAGACAAAGCATCAATGTTAGAAGAGGCAATTGAATACTTGAAATCACTTCAGTTACAACTTCAGGTGATGTGGATGGGATCTGGCATGACACCGATGATGCTACCGGGATATCAGCACTATATGTCACAAATGGGTATGGGAATGACTACACCTTCGTTTCCTCCACTTCAAAATCCGATGCAATTACCGAGAATGCCTCTGGATCCGTCCGTTTCTTCCTGTCAGACACCAAACCAGACATTAACGAGCCAAAATCCTGTTTTAGGTGCCTTCAACTACCAAAATCAGATGCAAAATCCTGCTCTTTCGGAGCAATATGCTCGTTACATGGGCTATCATCTTATGCAAAATGCTTCTCAGCCAATGAATATGTACAGATATGGTCCCCAAGCTGTACAAAATAGTCAAACAATGATTCCACCCAGCAATAGCAGTGGACCAATGAGTGGAACAGCAAACATTAATGATGCTGTGGGTGGCAAAATGGGTAGGCCAACACATACTTCTCTATTGTCATAG

Protein sequence

>Msa0358710

MNNTVPDWNFGSDSFVTNQKKQPMGLDHELVELLWQNGHVVLNSQTNKKQVLNSNTINSRQVHKNLQSTTLSNLIQDDETVSWIQQYPIEDPLEQELCSNLLSELPPCNVESFNSQPTNTKPPFVQEFPMSAPRFHHHVPDSLQRNNDLCGSGKVVNFSHFSRLPNVTLASTNGDANFRDKITGNLSQCDVRECSTMTVGSSYCGSNQVQQDQDVSRVSSNGVWTNLSTEPEQVRNDVQKTIPRHENGKSEMLEPAFTSSSGGSGSSLGKTCSLSTRSHDKKRKVMDVEDSVEQSEDTELKSAVRKKASQRSGSARRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSKTDKASMLEEAIEYLKSLQLQLQVMWMGSGMTPMMLPGYQHYMSQMGMGMTTPSFPPLQNPMQLPRMPLDPSVSSCQTPNQTLTSQNPVLGAFNYQNQMQNPALSEQYARYMGYHLMQNASQPMNMYRYGPQAVQNSQTMIPPSNSSGPMSGTANINDAVGGKMGRPTHTSLLS*