AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1024680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1024680 MtrunA17_Chr7g0242591 97.279 294 6 2 1 293 1 293 0.0 575
Msa1024680 MtrunA17_Chr4g0006261 76.984 252 57 1 41 291 28 279 4.90e-119 342
Msa1024680 MtrunA17_Chr5g0409071 46.619 281 123 8 37 292 23 301 1.48e-56 184
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1024680 AT5G01380.1 55.056 267 96 3 49 291 47 313 1.18e-74 231
Msa1024680 AT2G38250.1 57.299 274 96 4 33 291 19 286 3.28e-74 229
Msa1024680 AT3G25990.1 31.858 113 74 1 54 163 55 167 6.11e-14 71.6
Msa1024680 AT1G13450.3 33.696 92 61 0 54 145 87 178 1.11e-11 64.3
Msa1024680 AT1G13450.2 33.696 92 61 0 54 145 87 178 1.11e-11 64.3
Msa1024680 AT1G13450.1 33.696 92 61 0 54 145 87 178 1.92e-11 64.3
Msa1024680 AT1G13450.4 33.696 92 61 0 54 145 87 178 3.01e-11 62.4

Find 68 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGAAACTCCTTTGTTTCT+TGG 0.162176 7_1:-54390175 None:intergenic
AGAACTAGATCAAACTTTCA+TGG 0.325286 7_1:+54390208 Msa1024680:CDS
GCTTGAAGCTCATTGTAAAA+TGG 0.335464 7_1:-54390890 None:intergenic
AAACCTTGTTACTCGCTATA+AGG 0.341215 7_1:+54390328 Msa1024680:CDS
GTTGATGTTGTTGATGATGT+TGG 0.399503 7_1:-54390025 None:intergenic
CAAAGAGGAACAAACAGCTT+TGG 0.409902 7_1:+54390234 Msa1024680:CDS
TGAGAGGAGATTGAAGGAGA+TGG 0.420471 7_1:+54391201 Msa1024680:CDS
AAAGAGGAACAAACAGCTTT+GGG 0.427051 7_1:+54390235 Msa1024680:CDS
CTCTAACACTATGAAGGAAA+AGG 0.429380 7_1:+54390265 Msa1024680:CDS
CAACATGCTCATAACATCAT+AGG 0.432593 7_1:+54390101 Msa1024680:CDS
TGGAACAAAGATGGAGAGAA+AGG 0.438127 7_1:+54391269 Msa1024680:CDS
AGATTCTTGAGGAGTTTATG+AGG 0.459685 7_1:+54391125 Msa1024680:CDS
GGAGATTGAAGGAGATGGAG+TGG 0.466184 7_1:+54391206 Msa1024680:CDS
TCTAACACTATGAAGGAAAA+GGG 0.470472 7_1:+54390266 Msa1024680:CDS
ATATATGTAGGTGGAGGGTA+TGG 0.470701 7_1:-54389782 None:intergenic
GAAGGATTAGAGAAGAAGCT+AGG 0.478364 7_1:+54391302 Msa1024680:CDS
TCAATGGATGGAAGCATTTG+AGG 0.478413 7_1:+54391168 Msa1024680:CDS
TCTGAGGATGAAGAAGAGTT+AGG 0.481694 7_1:+54390992 Msa1024680:CDS
GAGAATATATATGTAGGTGG+AGG 0.485303 7_1:-54389788 None:intergenic
AAGGAGGGTCAAAGAAGAAA+GGG 0.488338 7_1:+54390957 Msa1024680:CDS
GATGGAGTGGAGACAAAGAA+TGG 0.488486 7_1:+54391219 Msa1024680:CDS
GGAGAATGAGAGGAGATTGA+AGG 0.494385 7_1:+54391195 Msa1024680:CDS
GGTTAATGATGGAACAAAGA+TGG 0.500019 7_1:+54391260 Msa1024680:CDS
GTTAGGCAATGAAGAAAGTG+AGG 0.500463 7_1:+54391009 Msa1024680:CDS
GAAGGAGGGTCAAAGAAGAA+AGG 0.513151 7_1:+54390956 Msa1024680:CDS
GAGGGTATGGTGTGAACAGA+AGG 0.514895 7_1:-54389769 None:intergenic
GAGACAAAGAATGGAAGCAT+TGG 0.518130 7_1:+54391228 Msa1024680:CDS
CAAGGATGCAAAGAATGCTA+TGG 0.520600 7_1:+54390924 Msa1024680:CDS
GAGAAAGGGAAGAACAAAGA+AGG 0.520747 7_1:+54391284 Msa1024680:CDS
TATGAGGCAGCAAATGCAAA+TGG 0.520773 7_1:+54391141 Msa1024680:CDS
GGAACAAAGATGGAGAGAAA+GGG 0.522554 7_1:+54391270 Msa1024680:CDS
TAGTGGTAGCAACAATTTGA+AGG 0.523300 7_1:+54391102 Msa1024680:CDS
AGTTATCTCTAACACTATGA+AGG 0.525230 7_1:+54390259 Msa1024680:CDS
TCACGGATAGATTTCCTCAA+TGG 0.529342 7_1:+54390147 Msa1024680:CDS
GGTGGAGGAAATGATAATAG+TGG 0.531218 7_1:+54391085 Msa1024680:CDS
TGGAAGCATTGGAGAATGAG+AGG 0.532379 7_1:+54391239 Msa1024680:CDS
GGAGAATGAGAGGTTAATGA+TGG 0.535043 7_1:+54391249 Msa1024680:CDS
TCGTGTAAGAAGAGAAGAAG+AGG 0.537803 7_1:-54389901 None:intergenic
GATAGGGAGAATATATATGT+AGG 0.544448 7_1:-54389794 None:intergenic
CAGAACAGTGCAAGTGCAAG+TGG 0.545159 7_1:+54390303 Msa1024680:CDS
CAATTTGAAGGAGATTCTTG+AGG 0.551112 7_1:+54391114 Msa1024680:CDS
AAATGGAAATTGTTGTCTCA+TGG 0.560448 7_1:-54390873 None:intergenic
AAATGCAAATGGAAGCTCAA+TGG 0.561080 7_1:+54391152 Msa1024680:CDS
AAAGGTAAGATGATAATTGG+TGG 0.562069 7_1:+54391067 Msa1024680:CDS
TAGTGTTAACGTTGATGTCA+CGG 0.564347 7_1:+54390130 Msa1024680:CDS
AAGGATTAGAGAAGAAGCTA+GGG 0.564945 7_1:+54391303 Msa1024680:CDS
AGGGAGAATATATATGTAGG+TGG 0.567126 7_1:-54389791 None:intergenic
GTTTCTTGGATACTCCATTG+AGG 0.570470 7_1:-54390161 None:intergenic
ATGCTATGGGCTGAAGCAGA+AGG 0.573045 7_1:+54390938 Msa1024680:CDS
GGATGGAAGCATTTGAGGCA+AGG 0.573712 7_1:+54391173 Msa1024680:CDS
AGAATATATATGTAGGTGGA+GGG 0.578546 7_1:-54389787 None:intergenic
TTGAGGCAAGGGAGAATGAG+AGG 0.584023 7_1:+54391185 Msa1024680:CDS
GCAAATGGAAGCTCAATGGA+TGG 0.584747 7_1:+54391156 Msa1024680:CDS
GATGGAAGCATTTGAGGCAA+GGG 0.587229 7_1:+54391174 Msa1024680:CDS
AGAAAGTGAGGGAGATCACA+AGG 0.594638 7_1:+54391021 Msa1024680:CDS
TTAGGCAATGAAGAAAGTGA+GGG 0.597635 7_1:+54391010 Msa1024680:CDS
GGTAAGATGATAATTGGTGG+AGG 0.599324 7_1:+54391070 Msa1024680:CDS
CTATGGGCTGAAGCAGAAGG+AGG 0.599474 7_1:+54390941 Msa1024680:CDS
AAACTTTCATGGAGACAAAG+AGG 0.604350 7_1:+54390219 Msa1024680:CDS
TATAAAGGGATGTGAAACAA+TGG 0.607384 7_1:+54390841 Msa1024680:intron
ATGGAGTATCCAAGAAACAA+AGG 0.617542 7_1:+54390166 Msa1024680:CDS
AGGGGTGCATGTATCTTCTG+AGG 0.631436 7_1:+54390976 Msa1024680:CDS
AAGTTTGATCTAGTTCTGAA+CGG 0.639250 7_1:-54390202 None:intergenic
AAGGATGCAAAGAATGCTAT+GGG 0.642173 7_1:+54390925 Msa1024680:CDS
ATACCTTATAGCGAGTAACA+AGG 0.647395 7_1:-54390331 None:intergenic
AGGAGGGTCAAAGAAGAAAG+GGG 0.670389 7_1:+54390958 Msa1024680:CDS
TATGGGCTGAAGCAGAAGGA+GGG 0.673793 7_1:+54390942 Msa1024680:CDS
GAAAGTGAGGGAGATCACAA+GGG 0.730407 7_1:+54391022 Msa1024680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTGTTAAACTTTTTTTT+TGG + chr7_1:54390546-54390565 Msa1024680:intron 10.0%
!!! ATTTTGTTAAACTTTTTTTT+TGG + chr7_1:54390546-54390565 Msa1024680:intron 10.0%
!! AATAAAAAAACAAAAGCAAA+AGG - chr7_1:54389980-54389999 None:intergenic 15.0%
!!! TATTGTTTTGTTTATGTTTT+TGG + chr7_1:54390816-54390835 Msa1024680:intron 15.0%
!!! ATTGTTTTGTTTATGTTTTT+GGG + chr7_1:54390817-54390836 Msa1024680:intron 15.0%
!! ATTAAAAAGAAGAAGAAAAA+AGG + chr7_1:54391049-54391068 Msa1024680:CDS 15.0%
!! AATAAAAAAACAAAAGCAAA+AGG - chr7_1:54389980-54389999 None:intergenic 15.0%
!!! TATTGTTTTGTTTATGTTTT+TGG + chr7_1:54390816-54390835 Msa1024680:intron 15.0%
!!! ATTGTTTTGTTTATGTTTTT+GGG + chr7_1:54390817-54390836 Msa1024680:intron 15.0%
!! ATTAAAAAGAAGAAGAAAAA+AGG + chr7_1:54391049-54391068 Msa1024680:CDS 15.0%
!!! AGAAATTTTTTTGGTGATTT+TGG - chr7_1:54389876-54389895 None:intergenic 20.0%
!!! GTTTTTTTATTCAACTTCAA+TGG + chr7_1:54389989-54390008 Msa1024680:exon 20.0%
!! AAACAAGAATGATTTATGAT+TGG - chr7_1:54390468-54390487 None:intergenic 20.0%
!! AAAAGGCAATAAATAAAAAG+TGG - chr7_1:54390624-54390643 None:intergenic 20.0%
!!! TTTATGTTTTTGGGATATAA+AGG + chr7_1:54390826-54390845 Msa1024680:intron 20.0%
!!! TTATGTTTTTGGGATATAAA+GGG + chr7_1:54390827-54390846 Msa1024680:intron 20.0%
!! AAAAAAGGTAAGATGATAAT+TGG + chr7_1:54391064-54391083 Msa1024680:CDS 20.0%
!!! AGAAATTTTTTTGGTGATTT+TGG - chr7_1:54389876-54389895 None:intergenic 20.0%
!!! GTTTTTTTATTCAACTTCAA+TGG + chr7_1:54389989-54390008 Msa1024680:exon 20.0%
!! AAACAAGAATGATTTATGAT+TGG - chr7_1:54390468-54390487 None:intergenic 20.0%
!! AAAAGGCAATAAATAAAAAG+TGG - chr7_1:54390624-54390643 None:intergenic 20.0%
!!! TTTATGTTTTTGGGATATAA+AGG + chr7_1:54390826-54390845 Msa1024680:intron 20.0%
!!! TTATGTTTTTGGGATATAAA+GGG + chr7_1:54390827-54390846 Msa1024680:intron 20.0%
!! AAAAAAGGTAAGATGATAAT+TGG + chr7_1:54391064-54391083 Msa1024680:CDS 20.0%
!!! TTTTTTGGTGATTTTGGTTA+TGG - chr7_1:54389870-54389889 None:intergenic 25.0%
!!! GAGGCTTATAGAAATTTTTT+TGG - chr7_1:54389885-54389904 None:intergenic 25.0%
!! TTTTTATTCAACTTCAATGG+AGG + chr7_1:54389992-54390011 Msa1024680:exon 25.0%
!! TTTTATTCAACTTCAATGGA+GGG + chr7_1:54389993-54390012 Msa1024680:exon 25.0%
! CACATAGAATGATTTATGAT+TGG - chr7_1:54390409-54390428 None:intergenic 25.0%
!!! TATTGCCTTTTCAATTTGTT+AGG + chr7_1:54390633-54390652 Msa1024680:intron 25.0%
!!! ATTGCCTTTTCAATTTGTTA+GGG + chr7_1:54390634-54390653 Msa1024680:intron 25.0%
!! TTTATATTGTGAGCTTTTCA+TGG + chr7_1:54390764-54390783 Msa1024680:intron 25.0%
!!! TTTTTTGGTGATTTTGGTTA+TGG - chr7_1:54389870-54389889 None:intergenic 25.0%
!!! GAGGCTTATAGAAATTTTTT+TGG - chr7_1:54389885-54389904 None:intergenic 25.0%
!! TTTTTATTCAACTTCAATGG+AGG + chr7_1:54389992-54390011 Msa1024680:exon 25.0%
!! TTTTATTCAACTTCAATGGA+GGG + chr7_1:54389993-54390012 Msa1024680:exon 25.0%
! CACATAGAATGATTTATGAT+TGG - chr7_1:54390409-54390428 None:intergenic 25.0%
!!! TATTGCCTTTTCAATTTGTT+AGG + chr7_1:54390633-54390652 Msa1024680:intron 25.0%
!!! ATTGCCTTTTCAATTTGTTA+GGG + chr7_1:54390634-54390653 Msa1024680:intron 25.0%
!! TTTATATTGTGAGCTTTTCA+TGG + chr7_1:54390764-54390783 Msa1024680:intron 25.0%
AGAATATATATGTAGGTGGA+GGG - chr7_1:54389790-54389809 None:intergenic 30.0%
GATAGGGAGAATATATATGT+AGG - chr7_1:54389797-54389816 None:intergenic 30.0%
AGATGAGAGAGAAAAAGATA+GGG - chr7_1:54389813-54389832 None:intergenic 30.0%
AAGATGAGAGAGAAAAAGAT+AGG - chr7_1:54389814-54389833 None:intergenic 30.0%
! TAAGAAACTCCTTTGTTTCT+TGG - chr7_1:54390178-54390197 None:intergenic 30.0%
!! AAGTTTGATCTAGTTCTGAA+CGG - chr7_1:54390205-54390224 None:intergenic 30.0%
AGAACTAGATCAAACTTTCA+TGG + chr7_1:54390208-54390227 Msa1024680:CDS 30.0%
AGTTATCTCTAACACTATGA+AGG + chr7_1:54390259-54390278 Msa1024680:CDS 30.0%
TCTAACACTATGAAGGAAAA+GGG + chr7_1:54390266-54390285 Msa1024680:CDS 30.0%
!!! TTGCCTTTTCAATTTGTTAG+GGG + chr7_1:54390635-54390654 Msa1024680:intron 30.0%
TTTGAATCATGAGAGAGAAA+AGG - chr7_1:54390665-54390684 None:intergenic 30.0%
! TTTTCTCTCTCATGATTCAA+AGG + chr7_1:54390664-54390683 Msa1024680:intron 30.0%
TTTCTCTCTCATGATTCAAA+GGG + chr7_1:54390665-54390684 Msa1024680:intron 30.0%
TATAAAGGGATGTGAAACAA+TGG + chr7_1:54390841-54390860 Msa1024680:intron 30.0%
AAATGGAAATTGTTGTCTCA+TGG - chr7_1:54390876-54390895 None:intergenic 30.0%
!!! TTCAAGCTATTTTTAGTGCA+AGG + chr7_1:54390906-54390925 Msa1024680:CDS 30.0%
AAAGGTAAGATGATAATTGG+TGG + chr7_1:54391067-54391086 Msa1024680:CDS 30.0%
AGAATATATATGTAGGTGGA+GGG - chr7_1:54389790-54389809 None:intergenic 30.0%
GATAGGGAGAATATATATGT+AGG - chr7_1:54389797-54389816 None:intergenic 30.0%
AGATGAGAGAGAAAAAGATA+GGG - chr7_1:54389813-54389832 None:intergenic 30.0%
AAGATGAGAGAGAAAAAGAT+AGG - chr7_1:54389814-54389833 None:intergenic 30.0%
! TAAGAAACTCCTTTGTTTCT+TGG - chr7_1:54390178-54390197 None:intergenic 30.0%
!! AAGTTTGATCTAGTTCTGAA+CGG - chr7_1:54390205-54390224 None:intergenic 30.0%
AGAACTAGATCAAACTTTCA+TGG + chr7_1:54390208-54390227 Msa1024680:CDS 30.0%
AGTTATCTCTAACACTATGA+AGG + chr7_1:54390259-54390278 Msa1024680:CDS 30.0%
TCTAACACTATGAAGGAAAA+GGG + chr7_1:54390266-54390285 Msa1024680:CDS 30.0%
!!! TTGCCTTTTCAATTTGTTAG+GGG + chr7_1:54390635-54390654 Msa1024680:intron 30.0%
TTTGAATCATGAGAGAGAAA+AGG - chr7_1:54390665-54390684 None:intergenic 30.0%
! TTTTCTCTCTCATGATTCAA+AGG + chr7_1:54390664-54390683 Msa1024680:intron 30.0%
TTTCTCTCTCATGATTCAAA+GGG + chr7_1:54390665-54390684 Msa1024680:intron 30.0%
TATAAAGGGATGTGAAACAA+TGG + chr7_1:54390841-54390860 Msa1024680:intron 30.0%
AAATGGAAATTGTTGTCTCA+TGG - chr7_1:54390876-54390895 None:intergenic 30.0%
!!! TTCAAGCTATTTTTAGTGCA+AGG + chr7_1:54390906-54390925 Msa1024680:CDS 30.0%
AAAGGTAAGATGATAATTGG+TGG + chr7_1:54391067-54391086 Msa1024680:CDS 30.0%
GAGAATATATATGTAGGTGG+AGG - chr7_1:54389791-54389810 None:intergenic 35.0%
AGGGAGAATATATATGTAGG+TGG - chr7_1:54389794-54389813 None:intergenic 35.0%
!!! TTTGGTGATTTTGGTTATGG+AGG - chr7_1:54389867-54389886 None:intergenic 35.0%
!! GTTGATGTTGTTGATGATGT+TGG - chr7_1:54390028-54390047 None:intergenic 35.0%
CAACATGCTCATAACATCAT+AGG + chr7_1:54390101-54390120 Msa1024680:CDS 35.0%
TAGTGTTAACGTTGATGTCA+CGG + chr7_1:54390130-54390149 Msa1024680:CDS 35.0%
! ATGGAGTATCCAAGAAACAA+AGG + chr7_1:54390166-54390185 Msa1024680:CDS 35.0%
AAACTTTCATGGAGACAAAG+AGG + chr7_1:54390219-54390238 Msa1024680:CDS 35.0%
AAAGAGGAACAAACAGCTTT+GGG + chr7_1:54390235-54390254 Msa1024680:CDS 35.0%
CTCTAACACTATGAAGGAAA+AGG + chr7_1:54390265-54390284 Msa1024680:CDS 35.0%
AAACCTTGTTACTCGCTATA+AGG + chr7_1:54390328-54390347 Msa1024680:CDS 35.0%
ATACCTTATAGCGAGTAACA+AGG - chr7_1:54390334-54390353 None:intergenic 35.0%
!!! TGCCTTTTCAATTTGTTAGG+GGG + chr7_1:54390636-54390655 Msa1024680:intron 35.0%
TACCCCCTAACAAATTGAAA+AGG - chr7_1:54390641-54390660 None:intergenic 35.0%
GCTTGAAGCTCATTGTAAAA+TGG - chr7_1:54390893-54390912 None:intergenic 35.0%
AAGGATGCAAAGAATGCTAT+GGG + chr7_1:54390925-54390944 Msa1024680:CDS 35.0%
TTAGGCAATGAAGAAAGTGA+GGG + chr7_1:54391010-54391029 Msa1024680:CDS 35.0%
TAGTGGTAGCAACAATTTGA+AGG + chr7_1:54391102-54391121 Msa1024680:CDS 35.0%
CAATTTGAAGGAGATTCTTG+AGG + chr7_1:54391114-54391133 Msa1024680:CDS 35.0%
AGATTCTTGAGGAGTTTATG+AGG + chr7_1:54391125-54391144 Msa1024680:CDS 35.0%
AAATGCAAATGGAAGCTCAA+TGG + chr7_1:54391152-54391171 Msa1024680:CDS 35.0%
! GGTTAATGATGGAACAAAGA+TGG + chr7_1:54391260-54391279 Msa1024680:CDS 35.0%
AAGGATTAGAGAAGAAGCTA+GGG + chr7_1:54391303-54391322 Msa1024680:CDS 35.0%
GAGAATATATATGTAGGTGG+AGG - chr7_1:54389791-54389810 None:intergenic 35.0%
AGGGAGAATATATATGTAGG+TGG - chr7_1:54389794-54389813 None:intergenic 35.0%
!!! TTTGGTGATTTTGGTTATGG+AGG - chr7_1:54389867-54389886 None:intergenic 35.0%
!! GTTGATGTTGTTGATGATGT+TGG - chr7_1:54390028-54390047 None:intergenic 35.0%
CAACATGCTCATAACATCAT+AGG + chr7_1:54390101-54390120 Msa1024680:CDS 35.0%
TAGTGTTAACGTTGATGTCA+CGG + chr7_1:54390130-54390149 Msa1024680:CDS 35.0%
! ATGGAGTATCCAAGAAACAA+AGG + chr7_1:54390166-54390185 Msa1024680:CDS 35.0%
AAACTTTCATGGAGACAAAG+AGG + chr7_1:54390219-54390238 Msa1024680:CDS 35.0%
AAAGAGGAACAAACAGCTTT+GGG + chr7_1:54390235-54390254 Msa1024680:CDS 35.0%
CTCTAACACTATGAAGGAAA+AGG + chr7_1:54390265-54390284 Msa1024680:CDS 35.0%
AAACCTTGTTACTCGCTATA+AGG + chr7_1:54390328-54390347 Msa1024680:CDS 35.0%
ATACCTTATAGCGAGTAACA+AGG - chr7_1:54390334-54390353 None:intergenic 35.0%
!!! TGCCTTTTCAATTTGTTAGG+GGG + chr7_1:54390636-54390655 Msa1024680:intron 35.0%
TACCCCCTAACAAATTGAAA+AGG - chr7_1:54390641-54390660 None:intergenic 35.0%
GCTTGAAGCTCATTGTAAAA+TGG - chr7_1:54390893-54390912 None:intergenic 35.0%
AAGGATGCAAAGAATGCTAT+GGG + chr7_1:54390925-54390944 Msa1024680:CDS 35.0%
TTAGGCAATGAAGAAAGTGA+GGG + chr7_1:54391010-54391029 Msa1024680:CDS 35.0%
TAGTGGTAGCAACAATTTGA+AGG + chr7_1:54391102-54391121 Msa1024680:CDS 35.0%
CAATTTGAAGGAGATTCTTG+AGG + chr7_1:54391114-54391133 Msa1024680:CDS 35.0%
AGATTCTTGAGGAGTTTATG+AGG + chr7_1:54391125-54391144 Msa1024680:CDS 35.0%
AAATGCAAATGGAAGCTCAA+TGG + chr7_1:54391152-54391171 Msa1024680:CDS 35.0%
! GGTTAATGATGGAACAAAGA+TGG + chr7_1:54391260-54391279 Msa1024680:CDS 35.0%
AAGGATTAGAGAAGAAGCTA+GGG + chr7_1:54391303-54391322 Msa1024680:CDS 35.0%
ATATATGTAGGTGGAGGGTA+TGG - chr7_1:54389785-54389804 None:intergenic 40.0%
TCGTGTAAGAAGAGAAGAAG+AGG - chr7_1:54389904-54389923 None:intergenic 40.0%
TCACGGATAGATTTCCTCAA+TGG + chr7_1:54390147-54390166 Msa1024680:CDS 40.0%
GTTTCTTGGATACTCCATTG+AGG - chr7_1:54390164-54390183 None:intergenic 40.0%
CAAAGAGGAACAAACAGCTT+TGG + chr7_1:54390234-54390253 Msa1024680:CDS 40.0%
CAAGGATGCAAAGAATGCTA+TGG + chr7_1:54390924-54390943 Msa1024680:CDS 40.0%
AAGGAGGGTCAAAGAAGAAA+GGG + chr7_1:54390957-54390976 Msa1024680:CDS 40.0%
TCTGAGGATGAAGAAGAGTT+AGG + chr7_1:54390992-54391011 Msa1024680:CDS 40.0%
GTTAGGCAATGAAGAAAGTG+AGG + chr7_1:54391009-54391028 Msa1024680:CDS 40.0%
GGTAAGATGATAATTGGTGG+AGG + chr7_1:54391070-54391089 Msa1024680:CDS 40.0%
GGTGGAGGAAATGATAATAG+TGG + chr7_1:54391085-54391104 Msa1024680:CDS 40.0%
TATGAGGCAGCAAATGCAAA+TGG + chr7_1:54391141-54391160 Msa1024680:CDS 40.0%
!! TCAATGGATGGAAGCATTTG+AGG + chr7_1:54391168-54391187 Msa1024680:CDS 40.0%
! GAGACAAAGAATGGAAGCAT+TGG + chr7_1:54391228-54391247 Msa1024680:CDS 40.0%
GGAGAATGAGAGGTTAATGA+TGG + chr7_1:54391249-54391268 Msa1024680:CDS 40.0%
TGGAACAAAGATGGAGAGAA+AGG + chr7_1:54391269-54391288 Msa1024680:CDS 40.0%
GGAACAAAGATGGAGAGAAA+GGG + chr7_1:54391270-54391289 Msa1024680:CDS 40.0%
GAGAAAGGGAAGAACAAAGA+AGG + chr7_1:54391284-54391303 Msa1024680:CDS 40.0%
GAAGGATTAGAGAAGAAGCT+AGG + chr7_1:54391302-54391321 Msa1024680:CDS 40.0%
GCTTACAAGAGAAGACATGT+AGG + chr7_1:54391366-54391385 Msa1024680:CDS 40.0%
ATATATGTAGGTGGAGGGTA+TGG - chr7_1:54389785-54389804 None:intergenic 40.0%
TCGTGTAAGAAGAGAAGAAG+AGG - chr7_1:54389904-54389923 None:intergenic 40.0%
TCACGGATAGATTTCCTCAA+TGG + chr7_1:54390147-54390166 Msa1024680:CDS 40.0%
GTTTCTTGGATACTCCATTG+AGG - chr7_1:54390164-54390183 None:intergenic 40.0%
CAAAGAGGAACAAACAGCTT+TGG + chr7_1:54390234-54390253 Msa1024680:CDS 40.0%
CAAGGATGCAAAGAATGCTA+TGG + chr7_1:54390924-54390943 Msa1024680:CDS 40.0%
AAGGAGGGTCAAAGAAGAAA+GGG + chr7_1:54390957-54390976 Msa1024680:CDS 40.0%
TCTGAGGATGAAGAAGAGTT+AGG + chr7_1:54390992-54391011 Msa1024680:CDS 40.0%
GTTAGGCAATGAAGAAAGTG+AGG + chr7_1:54391009-54391028 Msa1024680:CDS 40.0%
GGTAAGATGATAATTGGTGG+AGG + chr7_1:54391070-54391089 Msa1024680:CDS 40.0%
GGTGGAGGAAATGATAATAG+TGG + chr7_1:54391085-54391104 Msa1024680:CDS 40.0%
TATGAGGCAGCAAATGCAAA+TGG + chr7_1:54391141-54391160 Msa1024680:CDS 40.0%
!! TCAATGGATGGAAGCATTTG+AGG + chr7_1:54391168-54391187 Msa1024680:CDS 40.0%
! GAGACAAAGAATGGAAGCAT+TGG + chr7_1:54391228-54391247 Msa1024680:CDS 40.0%
GGAGAATGAGAGGTTAATGA+TGG + chr7_1:54391249-54391268 Msa1024680:CDS 40.0%
TGGAACAAAGATGGAGAGAA+AGG + chr7_1:54391269-54391288 Msa1024680:CDS 40.0%
GGAACAAAGATGGAGAGAAA+GGG + chr7_1:54391270-54391289 Msa1024680:CDS 40.0%
GAGAAAGGGAAGAACAAAGA+AGG + chr7_1:54391284-54391303 Msa1024680:CDS 40.0%
GAAGGATTAGAGAAGAAGCT+AGG + chr7_1:54391302-54391321 Msa1024680:CDS 40.0%
!!! GGTGATTTTGGTTATGGAGG+AGG - chr7_1:54389864-54389883 None:intergenic 45.0%
GAAGGAGGGTCAAAGAAGAA+AGG + chr7_1:54390956-54390975 Msa1024680:CDS 45.0%
AGGAGGGTCAAAGAAGAAAG+GGG + chr7_1:54390958-54390977 Msa1024680:CDS 45.0%
AGAAAGTGAGGGAGATCACA+AGG + chr7_1:54391021-54391040 Msa1024680:CDS 45.0%
GAAAGTGAGGGAGATCACAA+GGG + chr7_1:54391022-54391041 Msa1024680:CDS 45.0%
GCAAATGGAAGCTCAATGGA+TGG + chr7_1:54391156-54391175 Msa1024680:CDS 45.0%
!! GATGGAAGCATTTGAGGCAA+GGG + chr7_1:54391174-54391193 Msa1024680:CDS 45.0%
GGAGAATGAGAGGAGATTGA+AGG + chr7_1:54391195-54391214 Msa1024680:CDS 45.0%
TGAGAGGAGATTGAAGGAGA+TGG + chr7_1:54391201-54391220 Msa1024680:CDS 45.0%
GATGGAGTGGAGACAAAGAA+TGG + chr7_1:54391219-54391238 Msa1024680:CDS 45.0%
!! TGGAAGCATTGGAGAATGAG+AGG + chr7_1:54391239-54391258 Msa1024680:CDS 45.0%
!!! GGTGATTTTGGTTATGGAGG+AGG - chr7_1:54389864-54389883 None:intergenic 45.0%
GAAGGAGGGTCAAAGAAGAA+AGG + chr7_1:54390956-54390975 Msa1024680:CDS 45.0%
AGGAGGGTCAAAGAAGAAAG+GGG + chr7_1:54390958-54390977 Msa1024680:CDS 45.0%
AGAAAGTGAGGGAGATCACA+AGG + chr7_1:54391021-54391040 Msa1024680:CDS 45.0%
GAAAGTGAGGGAGATCACAA+GGG + chr7_1:54391022-54391041 Msa1024680:CDS 45.0%
GCAAATGGAAGCTCAATGGA+TGG + chr7_1:54391156-54391175 Msa1024680:CDS 45.0%
!! GATGGAAGCATTTGAGGCAA+GGG + chr7_1:54391174-54391193 Msa1024680:CDS 45.0%
GGAGAATGAGAGGAGATTGA+AGG + chr7_1:54391195-54391214 Msa1024680:CDS 45.0%
TGAGAGGAGATTGAAGGAGA+TGG + chr7_1:54391201-54391220 Msa1024680:CDS 45.0%
GATGGAGTGGAGACAAAGAA+TGG + chr7_1:54391219-54391238 Msa1024680:CDS 45.0%
!! TGGAAGCATTGGAGAATGAG+AGG + chr7_1:54391239-54391258 Msa1024680:CDS 45.0%
! GAGGGTATGGTGTGAACAGA+AGG - chr7_1:54389772-54389791 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG - chr7_1:54389839-54389858 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr7_1:54389838-54389857 None:intergenic 50.0%
CAGAACAGTGCAAGTGCAAG+TGG + chr7_1:54390303-54390322 Msa1024680:CDS 50.0%
! ATGCTATGGGCTGAAGCAGA+AGG + chr7_1:54390938-54390957 Msa1024680:CDS 50.0%
! TATGGGCTGAAGCAGAAGGA+GGG + chr7_1:54390942-54390961 Msa1024680:CDS 50.0%
! AGGGGTGCATGTATCTTCTG+AGG + chr7_1:54390976-54390995 Msa1024680:CDS 50.0%
!! GGATGGAAGCATTTGAGGCA+AGG + chr7_1:54391173-54391192 Msa1024680:CDS 50.0%
TTGAGGCAAGGGAGAATGAG+AGG + chr7_1:54391185-54391204 Msa1024680:CDS 50.0%
GGAGATTGAAGGAGATGGAG+TGG + chr7_1:54391206-54391225 Msa1024680:CDS 50.0%
! GAGGGTATGGTGTGAACAGA+AGG - chr7_1:54389772-54389791 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG - chr7_1:54389839-54389858 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr7_1:54389838-54389857 None:intergenic 50.0%
CAGAACAGTGCAAGTGCAAG+TGG + chr7_1:54390303-54390322 Msa1024680:CDS 50.0%
! ATGCTATGGGCTGAAGCAGA+AGG + chr7_1:54390938-54390957 Msa1024680:CDS 50.0%
! TATGGGCTGAAGCAGAAGGA+GGG + chr7_1:54390942-54390961 Msa1024680:CDS 50.0%
! AGGGGTGCATGTATCTTCTG+AGG + chr7_1:54390976-54390995 Msa1024680:CDS 50.0%
!! GGATGGAAGCATTTGAGGCA+AGG + chr7_1:54391173-54391192 Msa1024680:CDS 50.0%
TTGAGGCAAGGGAGAATGAG+AGG + chr7_1:54391185-54391204 Msa1024680:CDS 50.0%
GGAGATTGAAGGAGATGGAG+TGG + chr7_1:54391206-54391225 Msa1024680:CDS 50.0%
! CTATGGGCTGAAGCAGAAGG+AGG + chr7_1:54390941-54390960 Msa1024680:CDS 55.0%
! CTATGGGCTGAAGCAGAAGG+AGG + chr7_1:54390941-54390960 Msa1024680:CDS 55.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 54389759 54391387 54389759 ID=Msa1024680;Name=Msa1024680
chr7_1 mRNA 54389759 54391387 54389759 ID=Msa1024680-mRNA-1;Parent=Msa1024680;Name=Msa1024680-mRNA-1;_AED=0.01;_eAED=0.01;_QI=249|1|0.5|1|1|1|2|0|293
chr7_1 exon 54389759 54390349 54389759 ID=Msa1024680-mRNA-1:exon:10785;Parent=Msa1024680-mRNA-1
chr7_1 exon 54390848 54391387 54390848 ID=Msa1024680-mRNA-1:exon:10786;Parent=Msa1024680-mRNA-1
chr7_1 five_prime_UTR 54389759 54390007 54389759 ID=Msa1024680-mRNA-1:five_prime_utr;Parent=Msa1024680-mRNA-1
chr7_1 CDS 54390008 54390349 54390008 ID=Msa1024680-mRNA-1:cds;Parent=Msa1024680-mRNA-1
chr7_1 CDS 54390848 54391387 54390848 ID=Msa1024680-mRNA-1:cds;Parent=Msa1024680-mRNA-1
Gene Sequence

>Msa1024680

ATGGAGGGTCATCATCTCCAACATCATCAACAACATCAACAACAACATCATCAACAACATCAACAGCAACATCAACAAAGACAACATCAACAACAACATGCTCATAACATCATAGGTACTAGTAGTGTTAACGTTGATGTCACGGATAGATTTCCTCAATGGAGTATCCAAGAAACAAAGGAGTTTCTTATGATCCGTTCAGAACTAGATCAAACTTTCATGGAGACAAAGAGGAACAAACAGCTTTGGGAAGTTATCTCTAACACTATGAAGGAAAAGGGTTATCATAGAAGTGCAGAACAGTGCAAGTGCAAGTGGAAAAACCTTGTTACTCGCTATAAGGGATGTGAAACAATGGAGCTAGAAGCCATGAGACAACAATTTCCATTTTACAATGAGCTTCAAGCTATTTTTAGTGCAAGGATGCAAAGAATGCTATGGGCTGAAGCAGAAGGAGGGTCAAAGAAGAAAGGGGTGCATGTATCTTCTGAGGATGAAGAAGAGTTAGGCAATGAAGAAAGTGAGGGAGATCACAAGGGCAACATTAAAAAGAAGAAGAAAAAAGGTAAGATGATAATTGGTGGAGGAAATGATAATAGTGGTAGCAACAATTTGAAGGAGATTCTTGAGGAGTTTATGAGGCAGCAAATGCAAATGGAAGCTCAATGGATGGAAGCATTTGAGGCAAGGGAGAATGAGAGGAGATTGAAGGAGATGGAGTGGAGACAAAGAATGGAAGCATTGGAGAATGAGAGGTTAATGATGGAACAAAGATGGAGAGAAAGGGAAGAACAAAGAAGGATTAGAGAAGAAGCTAGGGCTGAAAAGAGAGATGAATTAATCACTGCTTTGCTTGATAAGCTTACAAGAGAAGACATGTAG

Protein sequence

>Msa1024680

MEGHHLQHHQQHQQQHHQQHQQQHQQRQHQQQHAHNIIGTSSVNVDVTDRFPQWSIQETKEFLMIRSELDQTFMETKRNKQLWEVISNTMKEKGYHRSAEQCKCKWKNLVTRYKGCETMELEAMRQQFPFYNELQAIFSARMQRMLWAEAEGGSKKKGVHVSSEDEEELGNEESEGDHKGNIKKKKKKGKMIIGGGNDNSGSNNLKEILEEFMRQQMQMEAQWMEAFEARENERRLKEMEWRQRMEALENERLMMEQRWREREEQRRIREEARAEKRDELITALLDKLTREDM*