AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1007480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1007480 MtrunA17_Chr7g0217851 76.821 151 15 1 70 220 61 191 1.35e-75 226
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 69 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGCTGCTGCTGGCATCCA+AGG 0.270786 7_1:-7043983 None:intergenic
GAAACGTGAATAACATTAAA+TGG 0.282735 7_1:-7044364 None:intergenic
ATCCAACGGCTGGCTGCTGC+TGG 0.310560 7_1:-7043992 None:intergenic
GTGTACTATGAAATGGCTTC+TGG 0.321871 7_1:+7044152 Msa1007480:three_prime_UTR
CAGTTTCTTCTTCTTAGACT+TGG 0.357409 7_1:-7042585 None:intergenic
AGTTATAAATATTGTTTCTC+TGG 0.361394 7_1:-7044188 None:intergenic
TCTAAATTCACTCTGGTCAT+TGG 0.364019 7_1:+7043158 Msa1007480:CDS
TTCTACTTCCTATGCATACT+TGG 0.364427 7_1:+7044243 Msa1007480:three_prime_UTR
CGCCCAACTACTCTAGATAT+TGG 0.372061 7_1:+7044086 Msa1007480:exon
AATAACATTAAATGGTAATC+TGG 0.373731 7_1:-7044356 None:intergenic
TCCATTCCCGTTCGTTCCCA+TGG 0.377294 7_1:+7042529 Msa1007480:exon
GTGCACATGCCAACACAATA+TGG 0.384828 7_1:+7043574 Msa1007480:CDS
TGAGGATAAAGCTGCTGTTC+AGG 0.399727 7_1:+7044047 Msa1007480:CDS
TGGCTGCTGCTGGCATCCAA+GGG 0.406161 7_1:-7043982 None:intergenic
GTGAAGCTGTATCATCTTCA+TGG 0.410616 7_1:-7043540 None:intergenic
CTGCATATCTGACCTTAGTT+AGG 0.414428 7_1:+7044312 Msa1007480:three_prime_UTR
CTTCTGAAATTCCTTCGATT+CGG 0.426782 7_1:-7042465 None:intergenic
TTATGATCAGATTTATCATC+AGG 0.427079 7_1:+7042725 Msa1007480:CDS
GGTCCAATATCTAGAGTAGT+TGG 0.437672 7_1:-7044089 None:intergenic
TCTCCCTCTCCTCTCTCAAC+CGG 0.450113 7_1:+7042371 None:intergenic
AAGTATGCATAGGAAGTAGA+AGG 0.450332 7_1:-7044241 None:intergenic
AAGAGAAGAAGAGAGGAGAT+AGG 0.453487 7_1:-7042404 None:intergenic
CCATTCCCGTTCGTTCCCAT+GGG 0.457296 7_1:+7042530 Msa1007480:exon
GGCATGTGCACAGGTTGAAT+TGG 0.460863 7_1:-7043562 None:intergenic
CTCCACCCATGGGAACGAAC+GGG 0.475346 7_1:-7042535 None:intergenic
ATAAAGCTGCTGTTCAGGAG+GGG 0.477624 7_1:+7044052 Msa1007480:CDS
TGCCAGCAGCAGCCAGCCGT+TGG 0.479830 7_1:+7043990 Msa1007480:CDS
CCGTTCGTTCCCATGGGTGG+AGG 0.484615 7_1:+7042536 Msa1007480:exon
TATTGTGTTGGCATGTGCAC+AGG 0.498215 7_1:-7043571 None:intergenic
GCAGGCCCGCAAAGCAAAAG+AGG 0.498850 7_1:+7043116 Msa1007480:CDS
TTCCCGTTCGTTCCCATGGG+TGG 0.500541 7_1:+7042533 Msa1007480:exon
CTGAAATTCCTTCGATTCGG+CGG 0.505307 7_1:-7042462 None:intergenic
ACCACCTTGCCATATTGTGT+TGG 0.505366 7_1:-7043583 None:intergenic
GTTGCAAGTGTACTATGAAA+TGG 0.509066 7_1:+7044145 Msa1007480:three_prime_UTR
TGAAAATGATATGAAGCCCT+TGG 0.509252 7_1:+7043966 Msa1007480:CDS
CTAGGGTTCCGCCGAATCGA+AGG 0.510517 7_1:+7042454 Msa1007480:five_prime_UTR
GTCCAATATCTAGAGTAGTT+GGG 0.512418 7_1:-7044088 None:intergenic
TAAAGCTGCTGTTCAGGAGG+GGG 0.518520 7_1:+7044053 Msa1007480:CDS
CCCATGGGAACGAACGGGAA+TGG 0.520437 7_1:-7042530 None:intergenic
CCTCCACCCATGGGAACGAA+CGG 0.521612 7_1:-7042536 None:intergenic
AGCCTCTTCTGCTAATCGAC+GGG 0.530366 7_1:-7043022 None:intergenic
GATAAAGCTGCTGTTCAGGA+GGG 0.535418 7_1:+7044051 Msa1007480:CDS
TGTTGAGCTCATCCAACGGC+TGG 0.538954 7_1:-7044002 None:intergenic
TGACGAATGTCACCTAACTA+AGG 0.547251 7_1:-7044324 None:intergenic
TGCCCGTCGATTAGCAAAAG+AGG 0.550604 7_1:+7043074 Msa1007480:CDS
GGAGATAGGCATAGGCTGAC+CGG 0.552636 7_1:-7042390 None:intergenic
AGCCCGTCGATTAGCAGAAG+AGG 0.554670 7_1:+7043020 Msa1007480:CDS
ATAGGCTGACCGGTTGAGAG+AGG 0.571238 7_1:-7042380 None:intergenic
AACTCAGAAAAGAAAACCTA+GGG 0.577601 7_1:+7042437 Msa1007480:five_prime_UTR
CAACTCAGAAAAGAAAACCT+AGG 0.581444 7_1:+7042436 Msa1007480:five_prime_UTR
ATAGTACACTTGCAACAACT+AGG 0.582344 7_1:-7044138 None:intergenic
AATATTTATAACTAATAGTG+TGG 0.584031 7_1:+7044198 Msa1007480:three_prime_UTR
GAATTGAAAGAGAAGAAGAG+AGG 0.585085 7_1:-7042411 None:intergenic
CTCTTGCTCTAAATTCACTC+TGG 0.587930 7_1:+7043151 Msa1007480:CDS
AGAAGAGAGGAGATAGGCAT+AGG 0.588072 7_1:-7042398 None:intergenic
GAGCCTCTTCTGCTAATCGA+CGG 0.589148 7_1:-7043023 None:intergenic
TGTGTTAGCAGTGCATACCT+TGG 0.593157 7_1:+7044272 Msa1007480:three_prime_UTR
AAGAGAAGAGAAGAAAAGAG+AGG 0.597244 7_1:+7042490 Msa1007480:five_prime_UTR
CAACTTCTCCAAGTATGCAT+AGG 0.607222 7_1:-7044251 None:intergenic
AAAGCTGCTGTTCAGGAGGG+GGG 0.608878 7_1:+7044054 Msa1007480:CDS
CGACACAAAATAATAAACCT+AGG 0.609524 7_1:-7044110 None:intergenic
GGATAAAGCTGCTGTTCAGG+AGG 0.611925 7_1:+7044050 Msa1007480:CDS
AGCACAAAACGTTAGCCTTG+AGG 0.612439 7_1:+7044029 Msa1007480:CDS
CTACTCTAGATATTGGACCT+AGG 0.618103 7_1:+7044093 Msa1007480:exon
GAACAGCAGCTTTATCCTCA+AGG 0.621167 7_1:-7044044 None:intergenic
TTGAATAAATAGCTTGACCA+AGG 0.629472 7_1:-7044289 None:intergenic
GACTTGTTGAGCTCATCCAA+CGG 0.652885 7_1:-7044006 None:intergenic
CATGCCAACACAATATGGCA+AGG 0.666641 7_1:+7043579 Msa1007480:CDS
GCCAACACAATATGGCAAGG+TGG 0.729546 7_1:+7043582 Msa1007480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGATATGAATTGTTAATT+TGG + chr7_1:7042838-7042857 Msa1007480:intron 15.0%
!! TTATAAGAAATTAAGCAAAA+GGG + chr7_1:7043903-7043922 Msa1007480:intron 15.0%
!!! ATTTTTAATTATGTATTTGC+AGG + chr7_1:7043936-7043955 Msa1007480:intron 15.0%
!! AATATTTATAACTAATAGTG+TGG + chr7_1:7044198-7044217 Msa1007480:three_prime_UTR 15.0%
!! TATGATATGAATTGTTAATT+TGG + chr7_1:7042838-7042857 Msa1007480:intron 15.0%
!! TTATAAGAAATTAAGCAAAA+GGG + chr7_1:7043903-7043922 Msa1007480:intron 15.0%
!!! ATTTTTAATTATGTATTTGC+AGG + chr7_1:7043936-7043955 Msa1007480:intron 15.0%
!! AATATTTATAACTAATAGTG+TGG + chr7_1:7044198-7044217 Msa1007480:three_prime_UTR 15.0%
!! CTAGTAAATGTTATGAAAAT+TGG - chr7_1:7042639-7042658 None:intergenic 20.0%
!!! TTTTAACTAACTTGTTATGT+TGG + chr7_1:7042757-7042776 Msa1007480:intron 20.0%
!! ATAAAATGATACTACTAATC+TGG + chr7_1:7042789-7042808 Msa1007480:intron 20.0%
!!! ATGAATTGTTAATTTGGTTA+TGG + chr7_1:7042844-7042863 Msa1007480:intron 20.0%
!!! ATAAAAAAAAGTCTTGTAGA+AGG - chr7_1:7043612-7043631 None:intergenic 20.0%
!!! CATAGCTTTTCTTTAAAATT+GGG + chr7_1:7043809-7043828 Msa1007480:intron 20.0%
!! TGCTTAATTTCTTATAAGTA+AGG - chr7_1:7043900-7043919 None:intergenic 20.0%
!! CTTATAAGAAATTAAGCAAA+AGG + chr7_1:7043902-7043921 Msa1007480:intron 20.0%
!!! AGTTATAAATATTGTTTCTC+TGG - chr7_1:7044191-7044210 None:intergenic 20.0%
!! AATAACATTAAATGGTAATC+TGG - chr7_1:7044359-7044378 None:intergenic 20.0%
!! CTAGTAAATGTTATGAAAAT+TGG - chr7_1:7042639-7042658 None:intergenic 20.0%
!!! TTTTAACTAACTTGTTATGT+TGG + chr7_1:7042757-7042776 Msa1007480:intron 20.0%
!! ATAAAATGATACTACTAATC+TGG + chr7_1:7042789-7042808 Msa1007480:intron 20.0%
!!! ATGAATTGTTAATTTGGTTA+TGG + chr7_1:7042844-7042863 Msa1007480:intron 20.0%
!!! ATAAAAAAAAGTCTTGTAGA+AGG - chr7_1:7043612-7043631 None:intergenic 20.0%
!!! CATAGCTTTTCTTTAAAATT+GGG + chr7_1:7043809-7043828 Msa1007480:intron 20.0%
!! TGCTTAATTTCTTATAAGTA+AGG - chr7_1:7043900-7043919 None:intergenic 20.0%
!! CTTATAAGAAATTAAGCAAA+AGG + chr7_1:7043902-7043921 Msa1007480:intron 20.0%
!!! AGTTATAAATATTGTTTCTC+TGG - chr7_1:7044191-7044210 None:intergenic 20.0%
!! AATAACATTAAATGGTAATC+TGG - chr7_1:7044359-7044378 None:intergenic 20.0%
!!! ACTTGGATTTCTTTTTTGTT+CGG - chr7_1:7042571-7042590 None:intergenic 25.0%
! TTATGATCAGATTTATCATC+AGG + chr7_1:7042725-7042744 Msa1007480:CDS 25.0%
! TCCATTGTATTTGTATTTGT+AGG + chr7_1:7042954-7042973 Msa1007480:intron 25.0%
! ACCTACAAATACAAATACAA+TGG - chr7_1:7042958-7042977 None:intergenic 25.0%
! TAAAAAAAAAGCAGAAGAAG+AGG + chr7_1:7043050-7043069 Msa1007480:CDS 25.0%
!!! GCAATTTTTAAGAAAACCTA+CGG - chr7_1:7043265-7043284 None:intergenic 25.0%
!! GTTTTCTTAAAAATTGCTCT+AGG + chr7_1:7043268-7043287 Msa1007480:intron 25.0%
!!! GGAATTTTTAAGAAAACCTA+CGG - chr7_1:7043429-7043448 None:intergenic 25.0%
!! GTTTTCTTAAAAATTCCTCT+AGG + chr7_1:7043432-7043451 Msa1007480:intron 25.0%
!!! CCAATTTTAAAGAAAAGCTA+TGG - chr7_1:7043811-7043830 None:intergenic 25.0%
!!! CCATAGCTTTTCTTTAAAAT+TGG + chr7_1:7043808-7043827 Msa1007480:intron 25.0%
!!! ACTTGGATTTCTTTTTTGTT+CGG - chr7_1:7042571-7042590 None:intergenic 25.0%
! TTATGATCAGATTTATCATC+AGG + chr7_1:7042725-7042744 Msa1007480:CDS 25.0%
! TCCATTGTATTTGTATTTGT+AGG + chr7_1:7042954-7042973 Msa1007480:intron 25.0%
! ACCTACAAATACAAATACAA+TGG - chr7_1:7042958-7042977 None:intergenic 25.0%
! TAAAAAAAAAGCAGAAGAAG+AGG + chr7_1:7043050-7043069 Msa1007480:CDS 25.0%
!!! GCAATTTTTAAGAAAACCTA+CGG - chr7_1:7043265-7043284 None:intergenic 25.0%
!! GTTTTCTTAAAAATTGCTCT+AGG + chr7_1:7043268-7043287 Msa1007480:intron 25.0%
!!! GGAATTTTTAAGAAAACCTA+CGG - chr7_1:7043429-7043448 None:intergenic 25.0%
!! GTTTTCTTAAAAATTCCTCT+AGG + chr7_1:7043432-7043451 Msa1007480:intron 25.0%
!!! CCAATTTTAAAGAAAAGCTA+TGG - chr7_1:7043811-7043830 None:intergenic 25.0%
!!! CCATAGCTTTTCTTTAAAAT+TGG + chr7_1:7043808-7043827 Msa1007480:intron 25.0%
AACTCAGAAAAGAAAACCTA+GGG + chr7_1:7042437-7042456 Msa1007480:five_prime_UTR 30.0%
! AGAAGAAAAGAGAGGATTTT+AGG + chr7_1:7042498-7042517 Msa1007480:five_prime_UTR 30.0%
! GAAGAAAAGAGAGGATTTTA+GGG + chr7_1:7042499-7042518 Msa1007480:five_prime_UTR 30.0%
AATGATACTACTAATCTGGA+TGG + chr7_1:7042793-7042812 Msa1007480:intron 30.0%
! GATGATGATGATGATGATAT+TGG + chr7_1:7042886-7042905 Msa1007480:intron 30.0%
ATTGATTGACATGAATGTTC+AGG - chr7_1:7043713-7043732 None:intergenic 30.0%
AGATGAAAAGTGAATAGAAG+TGG - chr7_1:7043743-7043762 None:intergenic 30.0%
CGACACAAAATAATAAACCT+AGG - chr7_1:7044113-7044132 None:intergenic 30.0%
TTGAATAAATAGCTTGACCA+AGG - chr7_1:7044292-7044311 None:intergenic 30.0%
AACTCAGAAAAGAAAACCTA+GGG + chr7_1:7042437-7042456 Msa1007480:five_prime_UTR 30.0%
! AGAAGAAAAGAGAGGATTTT+AGG + chr7_1:7042498-7042517 Msa1007480:five_prime_UTR 30.0%
! GAAGAAAAGAGAGGATTTTA+GGG + chr7_1:7042499-7042518 Msa1007480:five_prime_UTR 30.0%
AATGATACTACTAATCTGGA+TGG + chr7_1:7042793-7042812 Msa1007480:intron 30.0%
! GATGATGATGATGATGATAT+TGG + chr7_1:7042886-7042905 Msa1007480:intron 30.0%
ATTGATTGACATGAATGTTC+AGG - chr7_1:7043713-7043732 None:intergenic 30.0%
AGATGAAAAGTGAATAGAAG+TGG - chr7_1:7043743-7043762 None:intergenic 30.0%
CGACACAAAATAATAAACCT+AGG - chr7_1:7044113-7044132 None:intergenic 30.0%
TTGAATAAATAGCTTGACCA+AGG - chr7_1:7044292-7044311 None:intergenic 30.0%
GAATTGAAAGAGAAGAAGAG+AGG - chr7_1:7042414-7042433 None:intergenic 35.0%
CAACTCAGAAAAGAAAACCT+AGG + chr7_1:7042436-7042455 Msa1007480:five_prime_UTR 35.0%
!! CTTCTGAAATTCCTTCGATT+CGG - chr7_1:7042468-7042487 None:intergenic 35.0%
AAGAGAAGAGAAGAAAAGAG+AGG + chr7_1:7042490-7042509 Msa1007480:five_prime_UTR 35.0%
CAGTTTCTTCTTCTTAGACT+TGG - chr7_1:7042588-7042607 None:intergenic 35.0%
TGGAAAAGATAGATAGAGAG+AGG - chr7_1:7042619-7042638 None:intergenic 35.0%
!! ATGATATTGGCTCTCTGTAT+AGG + chr7_1:7042899-7042918 Msa1007480:intron 35.0%
!!! CTCTTCTTCTGCTACTTTTT+TGG - chr7_1:7042998-7043017 None:intergenic 35.0%
CAAAAAAGTAGCAGAAGAAG+AGG + chr7_1:7042996-7043015 Msa1007480:CDS 35.0%
TCTTGCTCAAAAAAAACTGC+AGG + chr7_1:7043098-7043117 Msa1007480:CDS 35.0%
TCTAAATTCACTCTGGTCAT+TGG + chr7_1:7043158-7043177 Msa1007480:CDS 35.0%
! TTTTGTAGTCATGTTTGGGT+AGG - chr7_1:7043205-7043224 None:intergenic 35.0%
! GCGTTTTTGTAGTCATGTTT+GGG - chr7_1:7043209-7043228 None:intergenic 35.0%
! AGCGTTTTTGTAGTCATGTT+TGG - chr7_1:7043210-7043229 None:intergenic 35.0%
!! CGTTGTTTCTTAGTAAGGAA+AGG - chr7_1:7043304-7043323 None:intergenic 35.0%
!! AAGCACGTTGTTTCTTAGTA+AGG - chr7_1:7043309-7043328 None:intergenic 35.0%
! TTTTGTAATCTGTATGCAGC+TGG + chr7_1:7043352-7043371 Msa1007480:intron 35.0%
! GAAAAAGCGTATCATCTTCA+TGG - chr7_1:7043379-7043398 None:intergenic 35.0%
!! CGTTGTTTCTTAGTAAGGAA+AGG - chr7_1:7043304-7043323 None:intergenic 35.0%
!! AAGCACGTTGTTTCTTAGTA+AGG - chr7_1:7043309-7043328 None:intergenic 35.0%
! TTTTGTAATCTGTATGCAGC+TGG + chr7_1:7043352-7043371 Msa1007480:intron 35.0%
AATATCCAGACACACACATT+AGG - chr7_1:7043678-7043697 None:intergenic 35.0%
CTTCTTGCTAATACACCAAA+TGG + chr7_1:7043835-7043854 Msa1007480:intron 35.0%
TGAAAATGATATGAAGCCCT+TGG + chr7_1:7043966-7043985 Msa1007480:CDS 35.0%
! GTCCAATATCTAGAGTAGTT+GGG - chr7_1:7044091-7044110 None:intergenic 35.0%
ATAGTACACTTGCAACAACT+AGG - chr7_1:7044141-7044160 None:intergenic 35.0%
GTTGCAAGTGTACTATGAAA+TGG + chr7_1:7044145-7044164 Msa1007480:three_prime_UTR 35.0%
AAGTATGCATAGGAAGTAGA+AGG - chr7_1:7044244-7044263 None:intergenic 35.0%
TTCTACTTCCTATGCATACT+TGG + chr7_1:7044243-7044262 Msa1007480:three_prime_UTR 35.0%
GAATTGAAAGAGAAGAAGAG+AGG - chr7_1:7042414-7042433 None:intergenic 35.0%
CAACTCAGAAAAGAAAACCT+AGG + chr7_1:7042436-7042455 Msa1007480:five_prime_UTR 35.0%
!! CTTCTGAAATTCCTTCGATT+CGG - chr7_1:7042468-7042487 None:intergenic 35.0%
AAGAGAAGAGAAGAAAAGAG+AGG + chr7_1:7042490-7042509 Msa1007480:five_prime_UTR 35.0%
CAGTTTCTTCTTCTTAGACT+TGG - chr7_1:7042588-7042607 None:intergenic 35.0%
TGGAAAAGATAGATAGAGAG+AGG - chr7_1:7042619-7042638 None:intergenic 35.0%
!! ATGATATTGGCTCTCTGTAT+AGG + chr7_1:7042899-7042918 Msa1007480:intron 35.0%
!!! CTCTTCTTCTGCTACTTTTT+TGG - chr7_1:7042998-7043017 None:intergenic 35.0%
CAAAAAAGTAGCAGAAGAAG+AGG + chr7_1:7042996-7043015 Msa1007480:CDS 35.0%
TCTTGCTCAAAAAAAACTGC+AGG + chr7_1:7043098-7043117 Msa1007480:CDS 35.0%
TCTAAATTCACTCTGGTCAT+TGG + chr7_1:7043158-7043177 Msa1007480:CDS 35.0%
! TTTTGTAGTCATGTTTGGGT+AGG - chr7_1:7043205-7043224 None:intergenic 35.0%
! GCGTTTTTGTAGTCATGTTT+GGG - chr7_1:7043209-7043228 None:intergenic 35.0%
! AGCGTTTTTGTAGTCATGTT+TGG - chr7_1:7043210-7043229 None:intergenic 35.0%
!! CGTTGTTTCTTAGTAAGGAA+AGG - chr7_1:7043304-7043323 None:intergenic 35.0%
!! AAGCACGTTGTTTCTTAGTA+AGG - chr7_1:7043309-7043328 None:intergenic 35.0%
! TTTTGTAATCTGTATGCAGC+TGG + chr7_1:7043352-7043371 Msa1007480:intron 35.0%
! GAAAAAGCGTATCATCTTCA+TGG - chr7_1:7043379-7043398 None:intergenic 35.0%
!! CGTTGTTTCTTAGTAAGGAA+AGG - chr7_1:7043304-7043323 None:intergenic 35.0%
!! AAGCACGTTGTTTCTTAGTA+AGG - chr7_1:7043309-7043328 None:intergenic 35.0%
! TTTTGTAATCTGTATGCAGC+TGG + chr7_1:7043352-7043371 Msa1007480:intron 35.0%
AATATCCAGACACACACATT+AGG - chr7_1:7043678-7043697 None:intergenic 35.0%
CTTCTTGCTAATACACCAAA+TGG + chr7_1:7043835-7043854 Msa1007480:intron 35.0%
TGAAAATGATATGAAGCCCT+TGG + chr7_1:7043966-7043985 Msa1007480:CDS 35.0%
! GTCCAATATCTAGAGTAGTT+GGG - chr7_1:7044091-7044110 None:intergenic 35.0%
ATAGTACACTTGCAACAACT+AGG - chr7_1:7044141-7044160 None:intergenic 35.0%
GTTGCAAGTGTACTATGAAA+TGG + chr7_1:7044145-7044164 Msa1007480:three_prime_UTR 35.0%
AAGTATGCATAGGAAGTAGA+AGG - chr7_1:7044244-7044263 None:intergenic 35.0%
TTCTACTTCCTATGCATACT+TGG + chr7_1:7044243-7044262 Msa1007480:three_prime_UTR 35.0%
AAGAGAAGAAGAGAGGAGAT+AGG - chr7_1:7042407-7042426 None:intergenic 40.0%
! CTCTTGCTCTAAATTCACTC+TGG + chr7_1:7043151-7043170 Msa1007480:CDS 40.0%
AAATCTACAAACACAGCCGT+AGG + chr7_1:7043246-7043265 Msa1007480:intron 40.0%
AAAGGACAAGACAATCCTAG+AGG - chr7_1:7043286-7043305 None:intergenic 40.0%
GTGAAGCTGTATCATCTTCA+TGG - chr7_1:7043543-7043562 None:intergenic 40.0%
AACAGGAGATAGGTTTATGC+AGG - chr7_1:7043645-7043664 None:intergenic 40.0%
CAGTTTCATGAACAGGAGAT+AGG - chr7_1:7043655-7043674 None:intergenic 40.0%
CATTAGGCAGTTTCATGAAC+AGG - chr7_1:7043662-7043681 None:intergenic 40.0%
! GGTCCAATATCTAGAGTAGT+TGG - chr7_1:7044092-7044111 None:intergenic 40.0%
CTACTCTAGATATTGGACCT+AGG + chr7_1:7044093-7044112 Msa1007480:exon 40.0%
GTGTACTATGAAATGGCTTC+TGG + chr7_1:7044152-7044171 Msa1007480:three_prime_UTR 40.0%
CAACTTCTCCAAGTATGCAT+AGG - chr7_1:7044254-7044273 None:intergenic 40.0%
CTGCATATCTGACCTTAGTT+AGG + chr7_1:7044312-7044331 Msa1007480:three_prime_UTR 40.0%
TGACGAATGTCACCTAACTA+AGG - chr7_1:7044327-7044346 None:intergenic 40.0%
AAGAGAAGAAGAGAGGAGAT+AGG - chr7_1:7042407-7042426 None:intergenic 40.0%
! CTCTTGCTCTAAATTCACTC+TGG + chr7_1:7043151-7043170 Msa1007480:CDS 40.0%
AAATCTACAAACACAGCCGT+AGG + chr7_1:7043246-7043265 Msa1007480:intron 40.0%
AAAGGACAAGACAATCCTAG+AGG - chr7_1:7043286-7043305 None:intergenic 40.0%
GTGAAGCTGTATCATCTTCA+TGG - chr7_1:7043543-7043562 None:intergenic 40.0%
AACAGGAGATAGGTTTATGC+AGG - chr7_1:7043645-7043664 None:intergenic 40.0%
CAGTTTCATGAACAGGAGAT+AGG - chr7_1:7043655-7043674 None:intergenic 40.0%
CATTAGGCAGTTTCATGAAC+AGG - chr7_1:7043662-7043681 None:intergenic 40.0%
! GGTCCAATATCTAGAGTAGT+TGG - chr7_1:7044092-7044111 None:intergenic 40.0%
CTACTCTAGATATTGGACCT+AGG + chr7_1:7044093-7044112 Msa1007480:exon 40.0%
GTGTACTATGAAATGGCTTC+TGG + chr7_1:7044152-7044171 Msa1007480:three_prime_UTR 40.0%
CAACTTCTCCAAGTATGCAT+AGG - chr7_1:7044254-7044273 None:intergenic 40.0%
CTGCATATCTGACCTTAGTT+AGG + chr7_1:7044312-7044331 Msa1007480:three_prime_UTR 40.0%
TGACGAATGTCACCTAACTA+AGG - chr7_1:7044327-7044346 None:intergenic 40.0%
AGAAGAGAGGAGATAGGCAT+AGG - chr7_1:7042401-7042420 None:intergenic 45.0%
!! CTGAAATTCCTTCGATTCGG+CGG - chr7_1:7042465-7042484 None:intergenic 45.0%
! AGCCTCTTTTGCTAATCGAC+GGG - chr7_1:7043079-7043098 None:intergenic 45.0%
! GAGCCTCTTTTGCTAATCGA+CGG - chr7_1:7043080-7043099 None:intergenic 45.0%
AAAGCTACAAACACAGCCGT+AGG + chr7_1:7043410-7043429 Msa1007480:intron 45.0%
! TATTGTGTTGGCATGTGCAC+AGG - chr7_1:7043574-7043593 None:intergenic 45.0%
GTGCACATGCCAACACAATA+TGG + chr7_1:7043574-7043593 Msa1007480:CDS 45.0%
CATGCCAACACAATATGGCA+AGG + chr7_1:7043579-7043598 Msa1007480:CDS 45.0%
ACCACCTTGCCATATTGTGT+TGG - chr7_1:7043586-7043605 None:intergenic 45.0%
AACTGCCTAATGTGTGTGTC+TGG + chr7_1:7043670-7043689 Msa1007480:intron 45.0%
GGAAAGAAGACAGTCCTAGA+GGG - chr7_1:7043879-7043898 None:intergenic 45.0%
AGGAAAGAAGACAGTCCTAG+AGG - chr7_1:7043880-7043899 None:intergenic 45.0%
!! GACTTGTTGAGCTCATCCAA+CGG - chr7_1:7044009-7044028 None:intergenic 45.0%
!! AGCACAAAACGTTAGCCTTG+AGG + chr7_1:7044029-7044048 Msa1007480:CDS 45.0%
! GAACAGCAGCTTTATCCTCA+AGG - chr7_1:7044047-7044066 None:intergenic 45.0%
TGAGGATAAAGCTGCTGTTC+AGG + chr7_1:7044047-7044066 Msa1007480:CDS 45.0%
GATAAAGCTGCTGTTCAGGA+GGG + chr7_1:7044051-7044070 Msa1007480:CDS 45.0%
ATAAAGCTGCTGTTCAGGAG+GGG + chr7_1:7044052-7044071 Msa1007480:CDS 45.0%
CGCCCAACTACTCTAGATAT+TGG + chr7_1:7044086-7044105 Msa1007480:exon 45.0%
TGTGTTAGCAGTGCATACCT+TGG + chr7_1:7044272-7044291 Msa1007480:three_prime_UTR 45.0%
AGAAGAGAGGAGATAGGCAT+AGG - chr7_1:7042401-7042420 None:intergenic 45.0%
!! CTGAAATTCCTTCGATTCGG+CGG - chr7_1:7042465-7042484 None:intergenic 45.0%
! AGCCTCTTTTGCTAATCGAC+GGG - chr7_1:7043079-7043098 None:intergenic 45.0%
! GAGCCTCTTTTGCTAATCGA+CGG - chr7_1:7043080-7043099 None:intergenic 45.0%
AAAGCTACAAACACAGCCGT+AGG + chr7_1:7043410-7043429 Msa1007480:intron 45.0%
! TATTGTGTTGGCATGTGCAC+AGG - chr7_1:7043574-7043593 None:intergenic 45.0%
GTGCACATGCCAACACAATA+TGG + chr7_1:7043574-7043593 Msa1007480:CDS 45.0%
CATGCCAACACAATATGGCA+AGG + chr7_1:7043579-7043598 Msa1007480:CDS 45.0%
ACCACCTTGCCATATTGTGT+TGG - chr7_1:7043586-7043605 None:intergenic 45.0%
AACTGCCTAATGTGTGTGTC+TGG + chr7_1:7043670-7043689 Msa1007480:intron 45.0%
GGAAAGAAGACAGTCCTAGA+GGG - chr7_1:7043879-7043898 None:intergenic 45.0%
AGGAAAGAAGACAGTCCTAG+AGG - chr7_1:7043880-7043899 None:intergenic 45.0%
!! GACTTGTTGAGCTCATCCAA+CGG - chr7_1:7044009-7044028 None:intergenic 45.0%
!! AGCACAAAACGTTAGCCTTG+AGG + chr7_1:7044029-7044048 Msa1007480:CDS 45.0%
! GAACAGCAGCTTTATCCTCA+AGG - chr7_1:7044047-7044066 None:intergenic 45.0%
TGAGGATAAAGCTGCTGTTC+AGG + chr7_1:7044047-7044066 Msa1007480:CDS 45.0%
GATAAAGCTGCTGTTCAGGA+GGG + chr7_1:7044051-7044070 Msa1007480:CDS 45.0%
ATAAAGCTGCTGTTCAGGAG+GGG + chr7_1:7044052-7044071 Msa1007480:CDS 45.0%
CGCCCAACTACTCTAGATAT+TGG + chr7_1:7044086-7044105 Msa1007480:exon 45.0%
TGTGTTAGCAGTGCATACCT+TGG + chr7_1:7044272-7044291 Msa1007480:three_prime_UTR 45.0%
!! TACAAAATAAAAATAAAAAA+TGG - chr7_1:7042682-7042701 None:intergenic 5.0%
!! TACAAAATAAAAATAAAAAA+TGG - chr7_1:7042682-7042701 None:intergenic 5.0%
AGCCTCTTCTGCTAATCGAC+GGG - chr7_1:7043025-7043044 None:intergenic 50.0%
GAGCCTCTTCTGCTAATCGA+CGG - chr7_1:7043026-7043045 None:intergenic 50.0%
! TGCCCGTCGATTAGCAAAAG+AGG + chr7_1:7043074-7043093 Msa1007480:CDS 50.0%
! TGCTGCCTCTTTTGCTTTGC+GGG - chr7_1:7043124-7043143 None:intergenic 50.0%
! CTGCTGCCTCTTTTGCTTTG+CGG - chr7_1:7043125-7043144 None:intergenic 50.0%
! GGCATGTGCACAGGTTGAAT+TGG - chr7_1:7043565-7043584 None:intergenic 50.0%
GCCAACACAATATGGCAAGG+TGG + chr7_1:7043582-7043601 Msa1007480:CDS 50.0%
CACCAAATGGAGAGAGCCTT+AGG + chr7_1:7043848-7043867 Msa1007480:intron 50.0%
TGCCTAAGGCTCTCTCCATT+TGG - chr7_1:7043853-7043872 None:intergenic 50.0%
GGATAAAGCTGCTGTTCAGG+AGG + chr7_1:7044050-7044069 Msa1007480:CDS 50.0%
TAAAGCTGCTGTTCAGGAGG+GGG + chr7_1:7044053-7044072 Msa1007480:CDS 50.0%
AGCCTCTTCTGCTAATCGAC+GGG - chr7_1:7043025-7043044 None:intergenic 50.0%
GAGCCTCTTCTGCTAATCGA+CGG - chr7_1:7043026-7043045 None:intergenic 50.0%
! TGCCCGTCGATTAGCAAAAG+AGG + chr7_1:7043074-7043093 Msa1007480:CDS 50.0%
! TGCTGCCTCTTTTGCTTTGC+GGG - chr7_1:7043124-7043143 None:intergenic 50.0%
! CTGCTGCCTCTTTTGCTTTG+CGG - chr7_1:7043125-7043144 None:intergenic 50.0%
! GGCATGTGCACAGGTTGAAT+TGG - chr7_1:7043565-7043584 None:intergenic 50.0%
GCCAACACAATATGGCAAGG+TGG + chr7_1:7043582-7043601 Msa1007480:CDS 50.0%
CACCAAATGGAGAGAGCCTT+AGG + chr7_1:7043848-7043867 Msa1007480:intron 50.0%
TGCCTAAGGCTCTCTCCATT+TGG - chr7_1:7043853-7043872 None:intergenic 50.0%
GGATAAAGCTGCTGTTCAGG+AGG + chr7_1:7044050-7044069 Msa1007480:CDS 50.0%
TAAAGCTGCTGTTCAGGAGG+GGG + chr7_1:7044053-7044072 Msa1007480:CDS 50.0%
ATAGGCTGACCGGTTGAGAG+AGG - chr7_1:7042383-7042402 None:intergenic 55.0%
GGAGATAGGCATAGGCTGAC+CGG - chr7_1:7042393-7042412 None:intergenic 55.0%
TCCATTCCCGTTCGTTCCCA+TGG + chr7_1:7042529-7042548 Msa1007480:exon 55.0%
CCATTCCCGTTCGTTCCCAT+GGG + chr7_1:7042530-7042549 Msa1007480:exon 55.0%
! CTTTTGCTGCCTCCACCCAT+GGG - chr7_1:7042548-7042567 None:intergenic 55.0%
! AGCCCGTCGATTAGCAGAAG+AGG + chr7_1:7043020-7043039 Msa1007480:CDS 55.0%
AGCCTTAGGCAATGCCCTCT+AGG + chr7_1:7043862-7043881 Msa1007480:intron 55.0%
!! GTCCTAGAGGGCATTGCCTA+AGG - chr7_1:7043867-7043886 None:intergenic 55.0%
TGTTGAGCTCATCCAACGGC+TGG - chr7_1:7044005-7044024 None:intergenic 55.0%
AAAGCTGCTGTTCAGGAGGG+GGG + chr7_1:7044054-7044073 Msa1007480:CDS 55.0%
TAGGCTGACCGGTTGAGAGA+GGG - chr7_1:7042382-7042401 None:intergenic 55.0%
ATAGGCTGACCGGTTGAGAG+AGG - chr7_1:7042383-7042402 None:intergenic 55.0%
GGAGATAGGCATAGGCTGAC+CGG - chr7_1:7042393-7042412 None:intergenic 55.0%
TCCATTCCCGTTCGTTCCCA+TGG + chr7_1:7042529-7042548 Msa1007480:exon 55.0%
CCATTCCCGTTCGTTCCCAT+GGG + chr7_1:7042530-7042549 Msa1007480:exon 55.0%
! CTTTTGCTGCCTCCACCCAT+GGG - chr7_1:7042548-7042567 None:intergenic 55.0%
! AGCCCGTCGATTAGCAGAAG+AGG + chr7_1:7043020-7043039 Msa1007480:CDS 55.0%
AGCCTTAGGCAATGCCCTCT+AGG + chr7_1:7043862-7043881 Msa1007480:intron 55.0%
!! GTCCTAGAGGGCATTGCCTA+AGG - chr7_1:7043867-7043886 None:intergenic 55.0%
TGTTGAGCTCATCCAACGGC+TGG - chr7_1:7044005-7044024 None:intergenic 55.0%
AAAGCTGCTGTTCAGGAGGG+GGG + chr7_1:7044054-7044073 Msa1007480:CDS 55.0%
!! CTTCGATTCGGCGGAACCCT+AGG - chr7_1:7042456-7042475 None:intergenic 60.0%
CTAGGGTTCCGCCGAATCGA+AGG + chr7_1:7042454-7042473 Msa1007480:five_prime_UTR 60.0%
CCCATGGGAACGAACGGGAA+TGG - chr7_1:7042533-7042552 None:intergenic 60.0%
TTCCCGTTCGTTCCCATGGG+TGG + chr7_1:7042533-7042552 Msa1007480:exon 60.0%
CTCCACCCATGGGAACGAAC+GGG - chr7_1:7042538-7042557 None:intergenic 60.0%
CCTCCACCCATGGGAACGAA+CGG - chr7_1:7042539-7042558 None:intergenic 60.0%
! GCTTTTGCTGCCTCCACCCA+TGG - chr7_1:7042549-7042568 None:intergenic 60.0%
GCAGGCCCGCAAAGCAAAAG+AGG + chr7_1:7043116-7043135 Msa1007480:CDS 60.0%
TGGCTGCTGCTGGCATCCAA+GGG - chr7_1:7043985-7044004 None:intergenic 60.0%
! GCTGTTCAGGAGGGGGGTAT+TGG + chr7_1:7044060-7044079 Msa1007480:CDS 60.0%
!! CTTCGATTCGGCGGAACCCT+AGG - chr7_1:7042456-7042475 None:intergenic 60.0%
CTAGGGTTCCGCCGAATCGA+AGG + chr7_1:7042454-7042473 Msa1007480:five_prime_UTR 60.0%
CCCATGGGAACGAACGGGAA+TGG - chr7_1:7042533-7042552 None:intergenic 60.0%
TTCCCGTTCGTTCCCATGGG+TGG + chr7_1:7042533-7042552 Msa1007480:exon 60.0%
CTCCACCCATGGGAACGAAC+GGG - chr7_1:7042538-7042557 None:intergenic 60.0%
CCTCCACCCATGGGAACGAA+CGG - chr7_1:7042539-7042558 None:intergenic 60.0%
! GCTTTTGCTGCCTCCACCCA+TGG - chr7_1:7042549-7042568 None:intergenic 60.0%
GCAGGCCCGCAAAGCAAAAG+AGG + chr7_1:7043116-7043135 Msa1007480:CDS 60.0%
TGGCTGCTGCTGGCATCCAA+GGG - chr7_1:7043985-7044004 None:intergenic 60.0%
! GCTGTTCAGGAGGGGGGTAT+TGG + chr7_1:7044060-7044079 Msa1007480:CDS 60.0%
CCGTTCGTTCCCATGGGTGG+AGG + chr7_1:7042536-7042555 Msa1007480:exon 65.0%
CTGGCTGCTGCTGGCATCCA+AGG - chr7_1:7043986-7044005 None:intergenic 65.0%
! ATCCAACGGCTGGCTGCTGC+TGG - chr7_1:7043995-7044014 None:intergenic 65.0%
CCGTTCGTTCCCATGGGTGG+AGG + chr7_1:7042536-7042555 Msa1007480:exon 65.0%
CTGGCTGCTGCTGGCATCCA+AGG - chr7_1:7043986-7044005 None:intergenic 65.0%
! ATCCAACGGCTGGCTGCTGC+TGG - chr7_1:7043995-7044014 None:intergenic 65.0%
TGCCAGCAGCAGCCAGCCGT+TGG + chr7_1:7043990-7044009 Msa1007480:CDS 70.0%
TGCCAGCAGCAGCCAGCCGT+TGG + chr7_1:7043990-7044009 Msa1007480:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 7042380 7044381 7042380 ID=Msa1007480;Name=Msa1007480
chr7_1 mRNA 7042380 7044381 7042380 ID=Msa1007480-mRNA-1;Parent=Msa1007480;Name=Msa1007480-mRNA-1;_AED=0.04;_eAED=0.04;_QI=168|0.8|0.66|1|1|1|6|280|220
chr7_1 exon 7042380 7042608 7042380 ID=Msa1007480-mRNA-1:exon:2100;Parent=Msa1007480-mRNA-1
chr7_1 exon 7042703 7042746 7042703 ID=Msa1007480-mRNA-1:exon:2101;Parent=Msa1007480-mRNA-1
chr7_1 exon 7042976 7043263 7042976 ID=Msa1007480-mRNA-1:exon:2102;Parent=Msa1007480-mRNA-1
chr7_1 exon 7043371 7043427 7043371 ID=Msa1007480-mRNA-1:exon:2103;Parent=Msa1007480-mRNA-1
chr7_1 exon 7043535 7043603 7043535 ID=Msa1007480-mRNA-1:exon:2104;Parent=Msa1007480-mRNA-1
chr7_1 exon 7043958 7044381 7043958 ID=Msa1007480-mRNA-1:exon:2105;Parent=Msa1007480-mRNA-1
chr7_1 five_prime_UTR 7042380 7042547 7042380 ID=Msa1007480-mRNA-1:five_prime_utr;Parent=Msa1007480-mRNA-1
chr7_1 CDS 7042548 7042608 7042548 ID=Msa1007480-mRNA-1:cds;Parent=Msa1007480-mRNA-1
chr7_1 CDS 7042703 7042746 7042703 ID=Msa1007480-mRNA-1:cds;Parent=Msa1007480-mRNA-1
chr7_1 CDS 7042976 7043263 7042976 ID=Msa1007480-mRNA-1:cds;Parent=Msa1007480-mRNA-1
chr7_1 CDS 7043371 7043427 7043371 ID=Msa1007480-mRNA-1:cds;Parent=Msa1007480-mRNA-1
chr7_1 CDS 7043535 7043603 7043535 ID=Msa1007480-mRNA-1:cds;Parent=Msa1007480-mRNA-1
chr7_1 CDS 7043958 7044101 7043958 ID=Msa1007480-mRNA-1:cds;Parent=Msa1007480-mRNA-1
chr7_1 three_prime_UTR 7044102 7044381 7044102 ID=Msa1007480-mRNA-1:three_prime_utr;Parent=Msa1007480-mRNA-1
Gene Sequence

>Msa1007480

ATGGGTGGAGGCAGCAAAAGCCGAACAAAAAAGAAATCCAAGTCTAAGAAGAAGAAACTGACATCTTCTGAACGTGAATCTATTTATGATCAGATTTATCATCAGGTACTATCTGATATACAAGCCAAAAAAGTAGCAGAAGAAGAGGAAGCCCGTCGATTAGCAGAAGAGGCTCTTGCTAAAAAAAAAGCAGAAGAAGAGGATGCCCGTCGATTAGCAAAAGAGGCTCTTGCTCAAAAAAAACTGCAGGCCCGCAAAGCAAAAGAGGCAGCAGAAAAGACTCTTGCTCTAAATTCACTCTGGTCATTGGCTGATGCAATGCGCTGTCGTTCCTACCCAAACATGACTACAAAAACGCTTTTTCTAAAACTTGCAAAATCTACAAACACAGCCCTGGACCATGAAGATGATACGCTTTTTCGAAAACTTGCAAAAGCTACAAACACAGCCCTGGACCATGAAGATGATACAGCTTCACCAATTCAACCTGTGCACATGCCAACACAATATGGCAAGGTGGTCAACTATGAAAATGATATGAAGCCCTTGGATGCCAGCAGCAGCCAGCCGTTGGATGAGCTCAACAAGTCAGCACAAAACGTTAGCCTTGAGGATAAAGCTGCTGTTCAGGAGGGGGGTATTGGCAGCGCCCAACTACTCTAG
Protein sequence

>Msa1007480

MGGGSKSRTKKKSKSKKKKLTSSERESIYDQIYHQVLSDIQAKKVAEEEEARRLAEEALAKKKAEEEDARRLAKEALAQKKLQARKAKEAAEKTLALNSLWSLADAMRCRSYPNMTTKTLFLKLAKSTNTALDHEDDTLFRKLAKATNTALDHEDDTASPIQPVHMPTQYGKVVNYENDMKPLDASSSQPLDELNKSAQNVSLEDKAAVQEGGIGSAQLL*