Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1099960 | XP_003621282.2 | 76.471 | 238 | 17 | 3 | 1 | 220 | 1 | 217 | 2.87e-82 | 254 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1099960 | G7L237 | 76.471 | 238 | 17 | 3 | 1 | 220 | 1 | 217 | 1.37e-82 | 254 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035130 | Msa1099960 | 0.823325 | 1.472164e-53 | -8.615850e-47 |
| Msa0800370 | Msa1099960 | 0.805841 | 1.098676e-49 | -8.615850e-47 |
| Msa0234320 | Msa1099960 | 0.810994 | 8.740412e-51 | -8.615850e-47 |
| Msa0394280 | Msa1099960 | 0.811575 | 6.536926e-51 | -8.615850e-47 |
| Msa0450480 | Msa1099960 | 0.807896 | 4.039469e-50 | -8.615850e-47 |
| Msa1007480 | Msa1099960 | 0.840445 | 8.658448e-58 | -8.615850e-47 |
| Msa1007510 | Msa1099960 | 0.807084 | 6.007001e-50 | -8.615850e-47 |
| Msa1013360 | Msa1099960 | 0.801401 | 9.162512e-49 | -8.615850e-47 |
| Msa1099960 | Msa1136290 | 0.936246 | 2.359905e-97 | -8.615850e-47 |
| Msa1099960 | Msa1240250 | 0.806048 | 9.936536e-50 | -8.615850e-47 |
| Msa1099960 | Msa1336560 | 0.803252 | 3.808919e-49 | -8.615850e-47 |
| Msa1099960 | Msa1349100 | 0.813823 | 2.105409e-51 | -8.615850e-47 |
| Msa1099960 | Msa1388160 | 0.817055 | 4.020974e-52 | -8.615850e-47 |
| Msa1099960 | Msa1406120 | 0.939684 | 8.404889e-100 | -8.615850e-47 |
| Msa1099960 | Msa1406150 | 0.926387 | 5.028562e-91 | -8.615850e-47 |
| Msa1099960 | Msa1437270 | 0.811755 | 5.972918e-51 | -8.615850e-47 |
| Msa1099960 | Msa1447180 | 0.829311 | 5.527647e-55 | -8.615850e-47 |
| Msa0518930 | Msa1099960 | 0.816994 | 4.149326e-52 | -8.615850e-47 |
| Msa0518950 | Msa1099960 | 0.803782 | 2.957215e-49 | -8.615850e-47 |
| Msa0518980 | Msa1099960 | 0.813642 | 2.308450e-51 | -8.615850e-47 |
| Msa0844440 | Msa1099960 | 0.802205 | 6.264900e-49 | -8.615850e-47 |
| Msa0903780 | Msa1099960 | 0.818606 | 1.795232e-52 | -8.615850e-47 |
| Msa0917830 | Msa1099960 | 0.822641 | 2.124546e-53 | -8.615850e-47 |
| Msa0974950 | Msa1099960 | 0.805903 | 1.065920e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1099960 | MtrunA17_Chr7g0217851 | 72.947 | 207 | 18 | 2 | 32 | 220 | 5 | 191 | 9.89e-77 | 229 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 53 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTCCAATATCTAGAGTATT+TGG | 0.162357 | 7_3:+29269991 | None:intergenic |
| TCATTTAACAATACATTAAA+TGG | 0.208866 | 7_3:+29269715 | None:intergenic |
| CTGGCTGCTGCTGGCATCCA+AGG | 0.270786 | 7_3:+29270097 | None:intergenic |
| ATCCAACGGCTGGCTGCTGC+TGG | 0.310560 | 7_3:+29270088 | None:intergenic |
| GTGTACTATGAAATGGCTTT+TGG | 0.328699 | 7_3:-29269928 | Msa1099960:three_prime_UTR |
| CAATACATTAAATGGTAATC+TGG | 0.349255 | 7_3:+29269723 | None:intergenic |
| CAGTTTCTTCTTCTTAGACT+TGG | 0.357409 | 7_3:+29271501 | None:intergenic |
| AGTTATAAATATTGTTTCTC+TGG | 0.361394 | 7_3:+29269892 | None:intergenic |
| TCTAAATTCACTCTGGTCAT+TGG | 0.364019 | 7_3:-29270919 | Msa1099960:CDS |
| TTCTACTTCCTATGCATACT+TGG | 0.364427 | 7_3:-29269837 | Msa1099960:three_prime_UTR |
| CGCCCAAATACTCTAGATAT+TGG | 0.369496 | 7_3:-29269994 | Msa1099960:exon |
| GTGCACATGCCAACACAATA+TGG | 0.384828 | 7_3:-29270511 | Msa1099960:CDS |
| TGAGGATAAAGCTGCTGTTC+AGG | 0.399727 | 7_3:-29270033 | Msa1099960:CDS |
| GTCCAATATCTAGAGTATTT+GGG | 0.403017 | 7_3:+29269992 | None:intergenic |
| TGGCTGCTGCTGGCATCCAA+GGG | 0.406161 | 7_3:+29270098 | None:intergenic |
| GTGAAGCTGTATCATCTTCA+TGG | 0.410616 | 7_3:+29270545 | None:intergenic |
| CTGCATAACTGACCTTAGTT+AGG | 0.426847 | 7_3:-29269767 | Msa1099960:three_prime_UTR |
| TTATGATCAGATTTATCGTC+AGG | 0.438391 | 7_3:-29271365 | Msa1099960:intron |
| AAGTATGCATAGGAAGTAGA+AGG | 0.450332 | 7_3:+29269839 | None:intergenic |
| ACCTCCTTGCCATATTGTGT+TGG | 0.459988 | 7_3:+29270502 | None:intergenic |
| GGCATGTGCACAGGTTGAAT+TGG | 0.460863 | 7_3:+29270523 | None:intergenic |
| CCGTTCGTTCCCATGGGTGG+AGG | 0.468628 | 7_3:-29271550 | None:intergenic |
| ATAAAGCTGCTGTTCAGGAG+GGG | 0.477624 | 7_3:-29270028 | Msa1099960:CDS |
| TGCCAGCAGCAGCCAGCCGT+TGG | 0.479830 | 7_3:-29270090 | Msa1099960:CDS |
| TATTGTGTTGGCATGTGCAC+AGG | 0.498215 | 7_3:+29270514 | None:intergenic |
| GCAGGCCCGCAAAGCAAAAG+AGG | 0.498850 | 7_3:-29270961 | Msa1099960:CDS |
| TTCCCGTTCGTTCCCATGGG+TGG | 0.507218 | 7_3:-29271553 | None:intergenic |
| GTTGCAAGTGTACTATGAAA+TGG | 0.509066 | 7_3:-29269935 | Msa1099960:three_prime_UTR |
| TGAAAATGATATGAAGCCCT+TGG | 0.509252 | 7_3:-29270114 | Msa1099960:CDS |
| TAAAGCTGCTGTTCAGGAGG+GGG | 0.518520 | 7_3:-29270027 | Msa1099960:CDS |
| TGCCTCTTCTGCTAATCGAC+GGG | 0.526335 | 7_3:+29271055 | None:intergenic |
| GATAAAGCTGCTGTTCAGGA+GGG | 0.535418 | 7_3:-29270029 | Msa1099960:CDS |
| TGTTGAGCTCATCCAACGGC+TGG | 0.538954 | 7_3:+29270078 | None:intergenic |
| GTGCCTCTTCTGCTAATCGA+CGG | 0.543717 | 7_3:+29271054 | None:intergenic |
| TGACCAATGTCACCTAACTA+AGG | 0.547251 | 7_3:+29269755 | None:intergenic |
| AGCCCGTCGATTAGCAAAAG+AGG | 0.550604 | 7_3:-29271003 | Msa1099960:CDS |
| AGCCCGTCGATTAGCAGAAG+AGG | 0.554670 | 7_3:-29271057 | Msa1099960:CDS |
| TGACCTTAGTTAGGTGACAT+TGG | 0.572381 | 7_3:-29269758 | Msa1099960:three_prime_UTR |
| ATAGTACACTTGCAACAACT+AGG | 0.582344 | 7_3:+29269942 | None:intergenic |
| AATATTTATAACTAATAGTG+TGG | 0.584031 | 7_3:-29269882 | Msa1099960:three_prime_UTR |
| CTCTTGCTCTAAATTCACTC+TGG | 0.585265 | 7_3:-29270926 | Msa1099960:CDS |
| CAACTTCTCCAAGTATGCAT+AGG | 0.607222 | 7_3:+29269829 | None:intergenic |
| AAAGCTGCTGTTCAGGAGGG+GGG | 0.608878 | 7_3:-29270026 | Msa1099960:CDS |
| CGACACAAAATAATAAACCT+AGG | 0.609524 | 7_3:+29269970 | None:intergenic |
| GGATAAAGCTGCTGTTCAGG+AGG | 0.611925 | 7_3:-29270030 | Msa1099960:CDS |
| AGCACAAAACGTTAGCCTTG+AGG | 0.612439 | 7_3:-29270051 | Msa1099960:CDS |
| GAACAGCAGCTTTATCCTCA+AGG | 0.621167 | 7_3:+29270036 | None:intergenic |
| ATACTCTAGATATTGGACCT+AGG | 0.625017 | 7_3:-29269987 | Msa1099960:exon |
| TTGAATAAATAGCTTGACCA+AGG | 0.629472 | 7_3:+29269790 | None:intergenic |
| GACTTGTTGAGCTCATCCAA+CGG | 0.652885 | 7_3:+29270074 | None:intergenic |
| GTGTTAGCATGTGCATACCT+TGG | 0.659371 | 7_3:-29269807 | Msa1099960:three_prime_UTR |
| CATGCCAACACAATATGGCA+AGG | 0.661413 | 7_3:-29270506 | Msa1099960:CDS |
| GCCAACACAATATGGCAAGG+AGG | 0.737684 | 7_3:-29270503 | Msa1099960:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACTAAATGTTATGAAAAT+TGG | + | chr7_3:29269814-29269833 | None:intergenic | 15.0% |
| !! | TATGATATGAATTGTTAATT+TGG | - | chr7_3:29270005-29270024 | Msa1099960:CDS | 15.0% |
| !! | AAATACAAATACTAATACAA+TGG | + | chr7_3:29270119-29270138 | None:intergenic | 15.0% |
| !! | TTATAAGAAATTAAGCAAAA+GGG | - | chr7_3:29271085-29271104 | Msa1099960:CDS | 15.0% |
| !!! | ATTTTTAATTATGTATTTGC+AGG | - | chr7_3:29271118-29271137 | Msa1099960:intron | 15.0% |
| !! | AATATTTATAACTAATAGTG+TGG | - | chr7_3:29271380-29271399 | Msa1099960:CDS | 15.0% |
| !! | ATACTAAATGTTATGAAAAT+TGG | + | chr7_3:29269814-29269833 | None:intergenic | 15.0% |
| !! | TATGATATGAATTGTTAATT+TGG | - | chr7_3:29270005-29270024 | Msa1099960:CDS | 15.0% |
| !! | AAATACAAATACTAATACAA+TGG | + | chr7_3:29270119-29270138 | None:intergenic | 15.0% |
| !! | TTATAAGAAATTAAGCAAAA+GGG | - | chr7_3:29271085-29271104 | Msa1099960:CDS | 15.0% |
| !!! | ATTTTTAATTATGTATTTGC+AGG | - | chr7_3:29271118-29271137 | Msa1099960:intron | 15.0% |
| !! | AATATTTATAACTAATAGTG+TGG | - | chr7_3:29271380-29271399 | Msa1099960:CDS | 15.0% |
| !!! | TTTTAACTAACTTGTTATGT+TGG | - | chr7_3:29269929-29269948 | Msa1099960:three_prime_UTR | 20.0% |
| !! | ATAAAATGATACTACTAATC+TGG | - | chr7_3:29269961-29269980 | Msa1099960:three_prime_UTR | 20.0% |
| !!! | ATGAATTGTTAATTTGGTTA+TGG | - | chr7_3:29270011-29270030 | Msa1099960:CDS | 20.0% |
| !! | GTATTTGTATTTGTATTTGT+AGG | - | chr7_3:29270127-29270146 | Msa1099960:intron | 20.0% |
| !!! | CAAAATATTGTTTCTTAGTA+AGG | + | chr7_3:29270658-29270677 | None:intergenic | 20.0% |
| !!! | AATAAAAAAAGTCTTGTAGA+AGG | + | chr7_3:29270789-29270808 | None:intergenic | 20.0% |
| !!! | CATAGCTTTTCTTTAAAATT+GGG | - | chr7_3:29270985-29271004 | Msa1099960:CDS | 20.0% |
| !! | AATTTCTTATAAGTAAGGAA+AGG | + | chr7_3:29271077-29271096 | None:intergenic | 20.0% |
| !! | TGCTTAATTTCTTATAAGTA+AGG | + | chr7_3:29271082-29271101 | None:intergenic | 20.0% |
| !! | CTTATAAGAAATTAAGCAAA+AGG | - | chr7_3:29271084-29271103 | Msa1099960:CDS | 20.0% |
| !!! | AGTTATAAATATTGTTTCTC+TGG | + | chr7_3:29271373-29271392 | None:intergenic | 20.0% |
| !!! | TTTTAACTAACTTGTTATGT+TGG | - | chr7_3:29269929-29269948 | Msa1099960:three_prime_UTR | 20.0% |
| !! | ATAAAATGATACTACTAATC+TGG | - | chr7_3:29269961-29269980 | Msa1099960:three_prime_UTR | 20.0% |
| !!! | ATGAATTGTTAATTTGGTTA+TGG | - | chr7_3:29270011-29270030 | Msa1099960:CDS | 20.0% |
| !! | GTATTTGTATTTGTATTTGT+AGG | - | chr7_3:29270127-29270146 | Msa1099960:intron | 20.0% |
| !!! | CAAAATATTGTTTCTTAGTA+AGG | + | chr7_3:29270658-29270677 | None:intergenic | 20.0% |
| !!! | AATAAAAAAAGTCTTGTAGA+AGG | + | chr7_3:29270789-29270808 | None:intergenic | 20.0% |
| !!! | CATAGCTTTTCTTTAAAATT+GGG | - | chr7_3:29270985-29271004 | Msa1099960:CDS | 20.0% |
| !! | AATTTCTTATAAGTAAGGAA+AGG | + | chr7_3:29271077-29271096 | None:intergenic | 20.0% |
| !! | TGCTTAATTTCTTATAAGTA+AGG | + | chr7_3:29271082-29271101 | None:intergenic | 20.0% |
| !! | CTTATAAGAAATTAAGCAAA+AGG | - | chr7_3:29271084-29271103 | Msa1099960:CDS | 20.0% |
| !!! | AGTTATAAATATTGTTTCTC+TGG | + | chr7_3:29271373-29271392 | None:intergenic | 20.0% |
| !!! | ACTTGGATTTCTTTTTTGTT+CGG | + | chr7_3:29269747-29269766 | None:intergenic | 25.0% |
| ! | TAAAAAAAAAGCAGAAGAAG+AGG | - | chr7_3:29270235-29270254 | Msa1099960:intron | 25.0% |
| !!! | GCAATTTTTAAGAAAACCTA+CGG | + | chr7_3:29270450-29270469 | None:intergenic | 25.0% |
| !! | GTTTTCTTAAAAATTGCTCT+AGG | - | chr7_3:29270453-29270472 | Msa1099960:intron | 25.0% |
| !!! | GGAATTTTTAAGAAAACCTA+CGG | + | chr7_3:29270614-29270633 | None:intergenic | 25.0% |
| !! | GTTTTCTTAAAAATTCCTCT+AGG | - | chr7_3:29270617-29270636 | Msa1099960:intron | 25.0% |
| !! | TATTGTTTCTTAGTAAGGAA+AGG | + | chr7_3:29270653-29270672 | None:intergenic | 25.0% |
| !!! | CCAATTTTAAAGAAAAGCTA+TGG | + | chr7_3:29270987-29271006 | None:intergenic | 25.0% |
| !!! | CCATAGCTTTTCTTTAAAAT+TGG | - | chr7_3:29270984-29271003 | Msa1099960:CDS | 25.0% |
| !!! | ACTTGGATTTCTTTTTTGTT+CGG | + | chr7_3:29269747-29269766 | None:intergenic | 25.0% |
| ! | TAAAAAAAAAGCAGAAGAAG+AGG | - | chr7_3:29270235-29270254 | Msa1099960:intron | 25.0% |
| !!! | GCAATTTTTAAGAAAACCTA+CGG | + | chr7_3:29270450-29270469 | None:intergenic | 25.0% |
| !! | GTTTTCTTAAAAATTGCTCT+AGG | - | chr7_3:29270453-29270472 | Msa1099960:intron | 25.0% |
| !!! | GGAATTTTTAAGAAAACCTA+CGG | + | chr7_3:29270614-29270633 | None:intergenic | 25.0% |
| !! | GTTTTCTTAAAAATTCCTCT+AGG | - | chr7_3:29270617-29270636 | Msa1099960:intron | 25.0% |
| !! | TATTGTTTCTTAGTAAGGAA+AGG | + | chr7_3:29270653-29270672 | None:intergenic | 25.0% |
| !!! | CCAATTTTAAAGAAAAGCTA+TGG | + | chr7_3:29270987-29271006 | None:intergenic | 25.0% |
| !!! | CCATAGCTTTTCTTTAAAAT+TGG | - | chr7_3:29270984-29271003 | Msa1099960:CDS | 25.0% |
| TTATGATCAGATTTATCGTC+AGG | - | chr7_3:29269897-29269916 | Msa1099960:three_prime_UTR | 30.0% | |
| AATGATACTACTAATCTGGA+TGG | - | chr7_3:29269965-29269984 | Msa1099960:three_prime_UTR | 30.0% | |
| GAATAGAAGTGGTATACTTA+TGG | + | chr7_3:29270908-29270927 | None:intergenic | 30.0% | |
| AGATGAAAAGTGAATAGAAG+TGG | + | chr7_3:29270919-29270938 | None:intergenic | 30.0% | |
| ! | GTCCAATATCTAGAGTATTT+GGG | + | chr7_3:29271273-29271292 | None:intergenic | 30.0% |
| CGACACAAAATAATAAACCT+AGG | + | chr7_3:29271295-29271314 | None:intergenic | 30.0% | |
| TTGAATAAATAGCTTGACCA+AGG | + | chr7_3:29271475-29271494 | None:intergenic | 30.0% | |
| TTATGATCAGATTTATCGTC+AGG | - | chr7_3:29269897-29269916 | Msa1099960:three_prime_UTR | 30.0% | |
| AATGATACTACTAATCTGGA+TGG | - | chr7_3:29269965-29269984 | Msa1099960:three_prime_UTR | 30.0% | |
| GAATAGAAGTGGTATACTTA+TGG | + | chr7_3:29270908-29270927 | None:intergenic | 30.0% | |
| AGATGAAAAGTGAATAGAAG+TGG | + | chr7_3:29270919-29270938 | None:intergenic | 30.0% | |
| ! | GTCCAATATCTAGAGTATTT+GGG | + | chr7_3:29271273-29271292 | None:intergenic | 30.0% |
| CGACACAAAATAATAAACCT+AGG | + | chr7_3:29271295-29271314 | None:intergenic | 30.0% | |
| TTGAATAAATAGCTTGACCA+AGG | + | chr7_3:29271475-29271494 | None:intergenic | 30.0% | |
| CAGTTTCTTCTTCTTAGACT+TGG | + | chr7_3:29269764-29269783 | None:intergenic | 35.0% | |
| TTGGAAAGATAGATAGAGAG+AGG | + | chr7_3:29269795-29269814 | None:intergenic | 35.0% | |
| ! | TAACATGATGATGATGATCC+TGG | - | chr7_3:29270047-29270066 | Msa1099960:CDS | 35.0% |
| !!! | CTCTTCTTCTGCTACTTTTT+TGG | + | chr7_3:29270183-29270202 | None:intergenic | 35.0% |
| CAAAAAAGTAGCAGAAGAAG+AGG | - | chr7_3:29270181-29270200 | Msa1099960:intron | 35.0% | |
| TCTTGCTCAAAAAAAACTGC+AGG | - | chr7_3:29270283-29270302 | Msa1099960:intron | 35.0% | |
| TCTAAATTCACTCTGGTCAT+TGG | - | chr7_3:29270343-29270362 | Msa1099960:intron | 35.0% | |
| ! | TTTTGTAGTCATGTTTGGGT+AGG | + | chr7_3:29270390-29270409 | None:intergenic | 35.0% |
| ! | GCGTTTTTGTAGTCATGTTT+GGG | + | chr7_3:29270394-29270413 | None:intergenic | 35.0% |
| ! | AGCGTTTTTGTAGTCATGTT+TGG | + | chr7_3:29270395-29270414 | None:intergenic | 35.0% |
| !! | CGTTGTTTCTTAGTAAGGAA+AGG | + | chr7_3:29270489-29270508 | None:intergenic | 35.0% |
| !! | AAGCACGTTGTTTCTTAGTA+AGG | + | chr7_3:29270494-29270513 | None:intergenic | 35.0% |
| ! | TTTTGTAATCTGTATGCAGC+TGG | - | chr7_3:29270537-29270556 | Msa1099960:CDS | 35.0% |
| ! | GAAAAAGCGTATCATCTTCA+TGG | + | chr7_3:29270564-29270583 | None:intergenic | 35.0% |
| ! | TTTTGTAATCTGTATGCAGC+TGG | - | chr7_3:29270537-29270556 | Msa1099960:CDS | 35.0% |
| AATATCCAGACACACACATT+AGG | + | chr7_3:29270854-29270873 | None:intergenic | 35.0% | |
| ! | ATGGATTGACATGAATGTTC+AGG | + | chr7_3:29270889-29270908 | None:intergenic | 35.0% |
| CTTCTTACTAATACGCCAAA+TGG | - | chr7_3:29271011-29271030 | Msa1099960:CDS | 35.0% | |
| TGAAAATGATATGAAGCCCT+TGG | - | chr7_3:29271148-29271167 | Msa1099960:intron | 35.0% | |
| ! | GGTCCAATATCTAGAGTATT+TGG | + | chr7_3:29271274-29271293 | None:intergenic | 35.0% |
| ATACTCTAGATATTGGACCT+AGG | - | chr7_3:29271275-29271294 | Msa1099960:intron | 35.0% | |
| ATAGTACACTTGCAACAACT+AGG | + | chr7_3:29271323-29271342 | None:intergenic | 35.0% | |
| GTTGCAAGTGTACTATGAAA+TGG | - | chr7_3:29271327-29271346 | Msa1099960:intron | 35.0% | |
| ! | GTGTACTATGAAATGGCTTT+TGG | - | chr7_3:29271334-29271353 | Msa1099960:intron | 35.0% |
| AAGTATGCATAGGAAGTAGA+AGG | + | chr7_3:29271426-29271445 | None:intergenic | 35.0% | |
| TTCTACTTCCTATGCATACT+TGG | - | chr7_3:29271425-29271444 | Msa1099960:intron | 35.0% | |
| CAGTTTCTTCTTCTTAGACT+TGG | + | chr7_3:29269764-29269783 | None:intergenic | 35.0% | |
| TTGGAAAGATAGATAGAGAG+AGG | + | chr7_3:29269795-29269814 | None:intergenic | 35.0% | |
| ! | TAACATGATGATGATGATCC+TGG | - | chr7_3:29270047-29270066 | Msa1099960:CDS | 35.0% |
| !!! | CTCTTCTTCTGCTACTTTTT+TGG | + | chr7_3:29270183-29270202 | None:intergenic | 35.0% |
| CAAAAAAGTAGCAGAAGAAG+AGG | - | chr7_3:29270181-29270200 | Msa1099960:intron | 35.0% | |
| TCTTGCTCAAAAAAAACTGC+AGG | - | chr7_3:29270283-29270302 | Msa1099960:intron | 35.0% | |
| TCTAAATTCACTCTGGTCAT+TGG | - | chr7_3:29270343-29270362 | Msa1099960:intron | 35.0% | |
| ! | TTTTGTAGTCATGTTTGGGT+AGG | + | chr7_3:29270390-29270409 | None:intergenic | 35.0% |
| ! | GCGTTTTTGTAGTCATGTTT+GGG | + | chr7_3:29270394-29270413 | None:intergenic | 35.0% |
| ! | AGCGTTTTTGTAGTCATGTT+TGG | + | chr7_3:29270395-29270414 | None:intergenic | 35.0% |
| !! | CGTTGTTTCTTAGTAAGGAA+AGG | + | chr7_3:29270489-29270508 | None:intergenic | 35.0% |
| !! | AAGCACGTTGTTTCTTAGTA+AGG | + | chr7_3:29270494-29270513 | None:intergenic | 35.0% |
| ! | TTTTGTAATCTGTATGCAGC+TGG | - | chr7_3:29270537-29270556 | Msa1099960:CDS | 35.0% |
| ! | GAAAAAGCGTATCATCTTCA+TGG | + | chr7_3:29270564-29270583 | None:intergenic | 35.0% |
| ! | TTTTGTAATCTGTATGCAGC+TGG | - | chr7_3:29270537-29270556 | Msa1099960:CDS | 35.0% |
| AATATCCAGACACACACATT+AGG | + | chr7_3:29270854-29270873 | None:intergenic | 35.0% | |
| ! | ATGGATTGACATGAATGTTC+AGG | + | chr7_3:29270889-29270908 | None:intergenic | 35.0% |
| CTTCTTACTAATACGCCAAA+TGG | - | chr7_3:29271011-29271030 | Msa1099960:CDS | 35.0% | |
| TGAAAATGATATGAAGCCCT+TGG | - | chr7_3:29271148-29271167 | Msa1099960:intron | 35.0% | |
| ! | GGTCCAATATCTAGAGTATT+TGG | + | chr7_3:29271274-29271293 | None:intergenic | 35.0% |
| ATACTCTAGATATTGGACCT+AGG | - | chr7_3:29271275-29271294 | Msa1099960:intron | 35.0% | |
| ATAGTACACTTGCAACAACT+AGG | + | chr7_3:29271323-29271342 | None:intergenic | 35.0% | |
| GTTGCAAGTGTACTATGAAA+TGG | - | chr7_3:29271327-29271346 | Msa1099960:intron | 35.0% | |
| ! | GTGTACTATGAAATGGCTTT+TGG | - | chr7_3:29271334-29271353 | Msa1099960:intron | 35.0% |
| AAGTATGCATAGGAAGTAGA+AGG | + | chr7_3:29271426-29271445 | None:intergenic | 35.0% | |
| TTCTACTTCCTATGCATACT+TGG | - | chr7_3:29271425-29271444 | Msa1099960:intron | 35.0% | |
| ! | CTCTTGCTCTAAATTCACTC+TGG | - | chr7_3:29270336-29270355 | Msa1099960:intron | 40.0% |
| AAATCTACAAACACAGCCGT+AGG | - | chr7_3:29270431-29270450 | Msa1099960:intron | 40.0% | |
| AAAGGACAAGACAATCCTAG+AGG | + | chr7_3:29270471-29270490 | None:intergenic | 40.0% | |
| GTGAAGCTGTATCATCTTCA+TGG | + | chr7_3:29270720-29270739 | None:intergenic | 40.0% | |
| AACAGGAGATAGGTTTATGC+AGG | + | chr7_3:29270821-29270840 | None:intergenic | 40.0% | |
| CAGTTTCATGAACAGGAGAT+AGG | + | chr7_3:29270831-29270850 | None:intergenic | 40.0% | |
| CATTAGGCAGTTTCATGAAC+AGG | + | chr7_3:29270838-29270857 | None:intergenic | 40.0% | |
| GATAAGAAGACAGTCCTAGA+GGG | + | chr7_3:29271055-29271074 | None:intergenic | 40.0% | |
| CGCCCAAATACTCTAGATAT+TGG | - | chr7_3:29271268-29271287 | Msa1099960:intron | 40.0% | |
| CAACTTCTCCAAGTATGCAT+AGG | + | chr7_3:29271436-29271455 | None:intergenic | 40.0% | |
| CTGCATAACTGACCTTAGTT+AGG | - | chr7_3:29271495-29271514 | Msa1099960:intron | 40.0% | |
| TGACCTTAGTTAGGTGACAT+TGG | - | chr7_3:29271504-29271523 | Msa1099960:CDS | 40.0% | |
| TGACCAATGTCACCTAACTA+AGG | + | chr7_3:29271510-29271529 | None:intergenic | 40.0% | |
| ! | CTCTTGCTCTAAATTCACTC+TGG | - | chr7_3:29270336-29270355 | Msa1099960:intron | 40.0% |
| AAATCTACAAACACAGCCGT+AGG | - | chr7_3:29270431-29270450 | Msa1099960:intron | 40.0% | |
| AAAGGACAAGACAATCCTAG+AGG | + | chr7_3:29270471-29270490 | None:intergenic | 40.0% | |
| GTGAAGCTGTATCATCTTCA+TGG | + | chr7_3:29270720-29270739 | None:intergenic | 40.0% | |
| AACAGGAGATAGGTTTATGC+AGG | + | chr7_3:29270821-29270840 | None:intergenic | 40.0% | |
| CAGTTTCATGAACAGGAGAT+AGG | + | chr7_3:29270831-29270850 | None:intergenic | 40.0% | |
| CATTAGGCAGTTTCATGAAC+AGG | + | chr7_3:29270838-29270857 | None:intergenic | 40.0% | |
| GATAAGAAGACAGTCCTAGA+GGG | + | chr7_3:29271055-29271074 | None:intergenic | 40.0% | |
| CGCCCAAATACTCTAGATAT+TGG | - | chr7_3:29271268-29271287 | Msa1099960:intron | 40.0% | |
| CAACTTCTCCAAGTATGCAT+AGG | + | chr7_3:29271436-29271455 | None:intergenic | 40.0% | |
| CTGCATAACTGACCTTAGTT+AGG | - | chr7_3:29271495-29271514 | Msa1099960:intron | 40.0% | |
| TGACCTTAGTTAGGTGACAT+TGG | - | chr7_3:29271504-29271523 | Msa1099960:CDS | 40.0% | |
| TGACCAATGTCACCTAACTA+AGG | + | chr7_3:29271510-29271529 | None:intergenic | 40.0% | |
| ! | ATGATCCTGGCTCTCTGTAT+AGG | - | chr7_3:29270060-29270079 | Msa1099960:CDS | 45.0% |
| AGAAACCTATACAGAGAGCC+AGG | + | chr7_3:29270068-29270087 | None:intergenic | 45.0% | |
| ! | AGCCTCTTTTGCTAATCGAC+GGG | + | chr7_3:29270264-29270283 | None:intergenic | 45.0% |
| ! | GAGCCTCTTTTGCTAATCGA+CGG | + | chr7_3:29270265-29270284 | None:intergenic | 45.0% |
| AAAGCTACAAACACAGCCGT+AGG | - | chr7_3:29270595-29270614 | Msa1099960:intron | 45.0% | |
| ! | TATTGTGTTGGCATGTGCAC+AGG | + | chr7_3:29270751-29270770 | None:intergenic | 45.0% |
| GTGCACATGCCAACACAATA+TGG | - | chr7_3:29270751-29270770 | Msa1099960:intron | 45.0% | |
| CATGCCAACACAATATGGCA+AGG | - | chr7_3:29270756-29270775 | Msa1099960:intron | 45.0% | |
| ACCTCCTTGCCATATTGTGT+TGG | + | chr7_3:29270763-29270782 | None:intergenic | 45.0% | |
| AACTGCCTAATGTGTGTGTC+TGG | - | chr7_3:29270846-29270865 | Msa1099960:CDS | 45.0% | |
| GGATAAGAAGACAGTCCTAG+AGG | + | chr7_3:29271056-29271075 | None:intergenic | 45.0% | |
| !! | GACTTGTTGAGCTCATCCAA+CGG | + | chr7_3:29271191-29271210 | None:intergenic | 45.0% |
| !! | AGCACAAAACGTTAGCCTTG+AGG | - | chr7_3:29271211-29271230 | Msa1099960:intron | 45.0% |
| ! | GAACAGCAGCTTTATCCTCA+AGG | + | chr7_3:29271229-29271248 | None:intergenic | 45.0% |
| TGAGGATAAAGCTGCTGTTC+AGG | - | chr7_3:29271229-29271248 | Msa1099960:intron | 45.0% | |
| GATAAAGCTGCTGTTCAGGA+GGG | - | chr7_3:29271233-29271252 | Msa1099960:intron | 45.0% | |
| ATAAAGCTGCTGTTCAGGAG+GGG | - | chr7_3:29271234-29271253 | Msa1099960:intron | 45.0% | |
| GTGTTAGCATGTGCATACCT+TGG | - | chr7_3:29271455-29271474 | Msa1099960:intron | 45.0% | |
| ! | ATGATCCTGGCTCTCTGTAT+AGG | - | chr7_3:29270060-29270079 | Msa1099960:CDS | 45.0% |
| AGAAACCTATACAGAGAGCC+AGG | + | chr7_3:29270068-29270087 | None:intergenic | 45.0% | |
| ! | AGCCTCTTTTGCTAATCGAC+GGG | + | chr7_3:29270264-29270283 | None:intergenic | 45.0% |
| ! | GAGCCTCTTTTGCTAATCGA+CGG | + | chr7_3:29270265-29270284 | None:intergenic | 45.0% |
| AAAGCTACAAACACAGCCGT+AGG | - | chr7_3:29270595-29270614 | Msa1099960:intron | 45.0% | |
| ! | TATTGTGTTGGCATGTGCAC+AGG | + | chr7_3:29270751-29270770 | None:intergenic | 45.0% |
| GTGCACATGCCAACACAATA+TGG | - | chr7_3:29270751-29270770 | Msa1099960:intron | 45.0% | |
| CATGCCAACACAATATGGCA+AGG | - | chr7_3:29270756-29270775 | Msa1099960:intron | 45.0% | |
| ACCTCCTTGCCATATTGTGT+TGG | + | chr7_3:29270763-29270782 | None:intergenic | 45.0% | |
| AACTGCCTAATGTGTGTGTC+TGG | - | chr7_3:29270846-29270865 | Msa1099960:CDS | 45.0% | |
| GGATAAGAAGACAGTCCTAG+AGG | + | chr7_3:29271056-29271075 | None:intergenic | 45.0% | |
| !! | GACTTGTTGAGCTCATCCAA+CGG | + | chr7_3:29271191-29271210 | None:intergenic | 45.0% |
| !! | AGCACAAAACGTTAGCCTTG+AGG | - | chr7_3:29271211-29271230 | Msa1099960:intron | 45.0% |
| ! | GAACAGCAGCTTTATCCTCA+AGG | + | chr7_3:29271229-29271248 | None:intergenic | 45.0% |
| TGAGGATAAAGCTGCTGTTC+AGG | - | chr7_3:29271229-29271248 | Msa1099960:intron | 45.0% | |
| GATAAAGCTGCTGTTCAGGA+GGG | - | chr7_3:29271233-29271252 | Msa1099960:intron | 45.0% | |
| ATAAAGCTGCTGTTCAGGAG+GGG | - | chr7_3:29271234-29271253 | Msa1099960:intron | 45.0% | |
| GTGTTAGCATGTGCATACCT+TGG | - | chr7_3:29271455-29271474 | Msa1099960:intron | 45.0% | |
| !! | TACAAAATAAAAATAAAAAA+TGG | + | chr7_3:29269854-29269873 | None:intergenic | 5.0% |
| !! | TACAAAATAAAAATAAAAAA+TGG | + | chr7_3:29269854-29269873 | None:intergenic | 5.0% |
| TGCCTCTTCTGCTAATCGAC+GGG | + | chr7_3:29270210-29270229 | None:intergenic | 50.0% | |
| GTGCCTCTTCTGCTAATCGA+CGG | + | chr7_3:29270211-29270230 | None:intergenic | 50.0% | |
| ! | AGCCCGTCGATTAGCAAAAG+AGG | - | chr7_3:29270259-29270278 | Msa1099960:intron | 50.0% |
| ! | TGCTGCCTCTTTTGCTTTGC+GGG | + | chr7_3:29270309-29270328 | None:intergenic | 50.0% |
| ! | CTGCTGCCTCTTTTGCTTTG+CGG | + | chr7_3:29270310-29270329 | None:intergenic | 50.0% |
| ! | GGCATGTGCACAGGTTGAAT+TGG | + | chr7_3:29270742-29270761 | None:intergenic | 50.0% |
| GCCAACACAATATGGCAAGG+AGG | - | chr7_3:29270759-29270778 | Msa1099960:intron | 50.0% | |
| TGCCTAAGGCTCTCTCCATT+TGG | + | chr7_3:29271029-29271048 | None:intergenic | 50.0% | |
| GGATAAAGCTGCTGTTCAGG+AGG | - | chr7_3:29271232-29271251 | Msa1099960:intron | 50.0% | |
| TAAAGCTGCTGTTCAGGAGG+GGG | - | chr7_3:29271235-29271254 | Msa1099960:intron | 50.0% | |
| TGCCTCTTCTGCTAATCGAC+GGG | + | chr7_3:29270210-29270229 | None:intergenic | 50.0% | |
| GTGCCTCTTCTGCTAATCGA+CGG | + | chr7_3:29270211-29270230 | None:intergenic | 50.0% | |
| ! | AGCCCGTCGATTAGCAAAAG+AGG | - | chr7_3:29270259-29270278 | Msa1099960:intron | 50.0% |
| ! | TGCTGCCTCTTTTGCTTTGC+GGG | + | chr7_3:29270309-29270328 | None:intergenic | 50.0% |
| ! | CTGCTGCCTCTTTTGCTTTG+CGG | + | chr7_3:29270310-29270329 | None:intergenic | 50.0% |
| ! | GGCATGTGCACAGGTTGAAT+TGG | + | chr7_3:29270742-29270761 | None:intergenic | 50.0% |
| GCCAACACAATATGGCAAGG+AGG | - | chr7_3:29270759-29270778 | Msa1099960:intron | 50.0% | |
| TGCCTAAGGCTCTCTCCATT+TGG | + | chr7_3:29271029-29271048 | None:intergenic | 50.0% | |
| GGATAAAGCTGCTGTTCAGG+AGG | - | chr7_3:29271232-29271251 | Msa1099960:intron | 50.0% | |
| TAAAGCTGCTGTTCAGGAGG+GGG | - | chr7_3:29271235-29271254 | Msa1099960:intron | 50.0% | |
| ! | AGCCCGTCGATTAGCAGAAG+AGG | - | chr7_3:29270205-29270224 | Msa1099960:intron | 55.0% |
| CGCCAAATGGAGAGAGCCTT+AGG | - | chr7_3:29271024-29271043 | Msa1099960:CDS | 55.0% | |
| AGCCTTAGGCAATGCCCTCT+AGG | - | chr7_3:29271038-29271057 | Msa1099960:CDS | 55.0% | |
| !! | GTCCTAGAGGGCATTGCCTA+AGG | + | chr7_3:29271043-29271062 | None:intergenic | 55.0% |
| TGTTGAGCTCATCCAACGGC+TGG | + | chr7_3:29271187-29271206 | None:intergenic | 55.0% | |
| AAAGCTGCTGTTCAGGAGGG+GGG | - | chr7_3:29271236-29271255 | Msa1099960:intron | 55.0% | |
| ! | AGCCCGTCGATTAGCAGAAG+AGG | - | chr7_3:29270205-29270224 | Msa1099960:intron | 55.0% |
| CGCCAAATGGAGAGAGCCTT+AGG | - | chr7_3:29271024-29271043 | Msa1099960:CDS | 55.0% | |
| AGCCTTAGGCAATGCCCTCT+AGG | - | chr7_3:29271038-29271057 | Msa1099960:CDS | 55.0% | |
| !! | GTCCTAGAGGGCATTGCCTA+AGG | + | chr7_3:29271043-29271062 | None:intergenic | 55.0% |
| TGTTGAGCTCATCCAACGGC+TGG | + | chr7_3:29271187-29271206 | None:intergenic | 55.0% | |
| AAAGCTGCTGTTCAGGAGGG+GGG | - | chr7_3:29271236-29271255 | Msa1099960:intron | 55.0% | |
| GCAGGCCCGCAAAGCAAAAG+AGG | - | chr7_3:29270301-29270320 | Msa1099960:intron | 60.0% | |
| TGGCTGCTGCTGGCATCCAA+GGG | + | chr7_3:29271167-29271186 | None:intergenic | 60.0% | |
| ! | GCTGTTCAGGAGGGGGGTAT+TGG | - | chr7_3:29271242-29271261 | Msa1099960:intron | 60.0% |
| GCAGGCCCGCAAAGCAAAAG+AGG | - | chr7_3:29270301-29270320 | Msa1099960:intron | 60.0% | |
| TGGCTGCTGCTGGCATCCAA+GGG | + | chr7_3:29271167-29271186 | None:intergenic | 60.0% | |
| ! | GCTGTTCAGGAGGGGGGTAT+TGG | - | chr7_3:29271242-29271261 | Msa1099960:intron | 60.0% |
| CTGGCTGCTGCTGGCATCCA+AGG | + | chr7_3:29271168-29271187 | None:intergenic | 65.0% | |
| ! | ATCCAACGGCTGGCTGCTGC+TGG | + | chr7_3:29271177-29271196 | None:intergenic | 65.0% |
| CTGGCTGCTGCTGGCATCCA+AGG | + | chr7_3:29271168-29271187 | None:intergenic | 65.0% | |
| ! | ATCCAACGGCTGGCTGCTGC+TGG | + | chr7_3:29271177-29271196 | None:intergenic | 65.0% |
| TGCCAGCAGCAGCCAGCCGT+TGG | - | chr7_3:29271172-29271191 | Msa1099960:intron | 70.0% | |
| TGCCAGCAGCAGCCAGCCGT+TGG | - | chr7_3:29271172-29271191 | Msa1099960:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 29269724 | 29271560 | 29269724 | ID=Msa1099960;Name=Msa1099960 |
| chr7_3 | mRNA | 29269724 | 29271560 | 29269724 | ID=Msa1099960-mRNA-1;Parent=Msa1099960;Name=Msa1099960-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.4|0.33|0.66|1|0.83|6|277|220 |
| chr7_3 | exon | 29269724 | 29270144 | 29269724 | ID=Msa1099960-mRNA-1:exon:6174;Parent=Msa1099960-mRNA-1 |
| chr7_3 | exon | 29270504 | 29270572 | 29270504 | ID=Msa1099960-mRNA-1:exon:6173;Parent=Msa1099960-mRNA-1 |
| chr7_3 | exon | 29270672 | 29270728 | 29270672 | ID=Msa1099960-mRNA-1:exon:6172;Parent=Msa1099960-mRNA-1 |
| chr7_3 | exon | 29270836 | 29271123 | 29270836 | ID=Msa1099960-mRNA-1:exon:6171;Parent=Msa1099960-mRNA-1 |
| chr7_3 | exon | 29271366 | 29271409 | 29271366 | ID=Msa1099960-mRNA-1:exon:6170;Parent=Msa1099960-mRNA-1 |
| chr7_3 | exon | 29271500 | 29271560 | 29271500 | ID=Msa1099960-mRNA-1:exon:6169;Parent=Msa1099960-mRNA-1 |
| chr7_3 | CDS | 29271500 | 29271560 | 29271500 | ID=Msa1099960-mRNA-1:cds;Parent=Msa1099960-mRNA-1 |
| chr7_3 | CDS | 29271366 | 29271409 | 29271366 | ID=Msa1099960-mRNA-1:cds;Parent=Msa1099960-mRNA-1 |
| chr7_3 | CDS | 29270836 | 29271123 | 29270836 | ID=Msa1099960-mRNA-1:cds;Parent=Msa1099960-mRNA-1 |
| chr7_3 | CDS | 29270672 | 29270728 | 29270672 | ID=Msa1099960-mRNA-1:cds;Parent=Msa1099960-mRNA-1 |
| chr7_3 | CDS | 29270504 | 29270572 | 29270504 | ID=Msa1099960-mRNA-1:cds;Parent=Msa1099960-mRNA-1 |
| chr7_3 | CDS | 29270001 | 29270144 | 29270001 | ID=Msa1099960-mRNA-1:cds;Parent=Msa1099960-mRNA-1 |
| chr7_3 | three_prime_UTR | 29269724 | 29270000 | 29269724 | ID=Msa1099960-mRNA-1:three_prime_utr;Parent=Msa1099960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
