AlfalfaGEDB | Msa1406120

M. sativa cultivar zhongmu-4 / Msa1406120

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1406120	ABD32736.1	58.712	264	31	5	25	234	138	377	1.06e-72	246
Msa1406120	ABD32736.1	70.423	284	20	4	242	499	138	383	5.57e-86	280

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1406120	Q2HT70	58.712	264	31	5	25	234	138	377	5.07e-73	246
Msa1406120	Q2HT70	70.423	284	20	4	242	499	138	383	2.66e-86	280

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0119900	Msa1406120	0.805863	1.087122e-49	-8.615850e-47
Msa0234320	Msa1406120	0.803433	3.494432e-49	-8.615850e-47
Msa0394280	Msa1406120	0.804527	2.070010e-49	-8.615850e-47
Msa0800370	Msa1406120	0.800246	1.576826e-48	-8.615850e-47
Msa0917830	Msa1406120	0.830752	2.459890e-55	-8.615850e-47
Msa0974950	Msa1406120	0.812042	5.173757e-51	-8.615850e-47
Msa1007480	Msa1406120	0.863815	1.901062e-64	-8.615850e-47
Msa1007510	Msa1406120	0.827620	1.414571e-54	-8.615850e-47
Msa1099960	Msa1406120	0.939684	8.404889e-100	-8.615850e-47
Msa1136290	Msa1406120	0.930192	2.341691e-93	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1406120	MtrunA17_Chr7g0217851	72.947	207	18	2	311	499	5	191	1.98e-71	225
Msa1406120	MtrunA17_Chr7g0217851	63.682	201	17	2	70	234	5	185	3.50e-68	217

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 78 sgRNAs with CRISPR-Local

Find 535 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTGCTGTTCAGGAGGG+GGG	0.558778	tig0023193:-36710	Msa1406120:CDS
AACAACTCGTTCGTTCCCAT+GGG	0.544415	tig0023193:-30070	Msa1406120:CDS
AACAACTCGTTCGTTCCCAT+GGG	0.544415	tig0023193:-38205	Msa1406120:CDS
AACACAAAACGTTAGCCTTG+AGG	0.622562	tig0023193:-28634	Msa1406120:CDS
AACACAAAACGTTAGCCTTG+AGG	0.622562	tig0023193:-36735	Msa1406120:CDS
AACTCAGAAAAGAAAACCTA+AGG	0.565870	tig0023193:-38354	Msa1406120:CDS
AACTCGTTCGTTCCCATGGG+TGG	0.547111	tig0023193:-30067	Msa1406120:CDS
AACTCGTTCGTTCCCATGGG+TGG	0.547111	tig0023193:-38202	Msa1406120:CDS
AAGAGAAGAGAAGAAAAGAG+AGG	0.577793	tig0023193:-30164	Msa1406120:CDS
AAGCTGCTGTTCAGGAGGGG+GGG	0.617540	tig0023193:-36709	Msa1406120:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAATTTACTCTCACAACAAG+CGG	-	tig0023193:28612-28631	Msa1406120:CDS	30.0%
AACTCAGAAAAGAAAACCTA+AGG	-	tig0023193:28792-28811	Msa1406120:intron	30.0%
GAAAGAGAATGATTAGGAAA+TGG	+	tig0023193:28883-28902	None:intergenic	30.0%
AAGAACGAAAGAGAATGATT+AGG	+	tig0023193:28889-28908	None:intergenic	30.0%
TTATGATCAGATTTATCGTC+AGG	-	tig0023193:29158-29177	Msa1406120:intron	30.0%
GAATAGAAGTGGTATACTTA+TGG	+	tig0023193:30108-30127	None:intergenic	30.0%
AGATGAAAAGTGAATAGAAG+TGG	+	tig0023193:30119-30138	None:intergenic	30.0%
CTTCTTACTAATACACCAAA+TGG	-	tig0023193:30211-30230	Msa1406120:intron	30.0%
CGACACAAAATAATAAACCT+AGG	+	tig0023193:30496-30515	None:intergenic	30.0%
TTGAATAAATAGCTTGACGA+AGG	+	tig0023193:30675-30694	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0023193	gene	28584	38584	28584	ID=Msa1406120;Name=Msa1406120
tig0023193	mRNA	28584	38584	28584	ID=Msa1406120-mRNA-1;Parent=Msa1406120;Name=Msa1406120-mRNA-1;_AED=0.13;_eAED=0.21;_QI=0\|0.53\|0.42\|0.92\|0.92\|0.92\|14\|0\|499
tig0023193	exon	38576	38584	38576	ID=Msa1406120-mRNA-1:exon:24443;Parent=Msa1406120-mRNA-1
tig0023193	exon	38298	38393	38298	ID=Msa1406120-mRNA-1:exon:24442;Parent=Msa1406120-mRNA-1
tig0023193	exon	38169	38238	38169	ID=Msa1406120-mRNA-1:exon:24441;Parent=Msa1406120-mRNA-1
tig0023193	exon	37989	38032	37989	ID=Msa1406120-mRNA-1:exon:24440;Parent=Msa1406120-mRNA-1
tig0023193	exon	37580	37813	37580	ID=Msa1406120-mRNA-1:exon:24439;Parent=Msa1406120-mRNA-1
tig0023193	exon	37416	37472	37416	ID=Msa1406120-mRNA-1:exon:24438;Parent=Msa1406120-mRNA-1
tig0023193	exon	37240	37308	37240	ID=Msa1406120-mRNA-1:exon:24437;Parent=Msa1406120-mRNA-1
tig0023193	exon	36710	36828	36710	ID=Msa1406120-mRNA-1:exon:24436;Parent=Msa1406120-mRNA-1
tig0023193	exon	30014	30213	30014	ID=Msa1406120-mRNA-1:exon:24435;Parent=Msa1406120-mRNA-1
tig0023193	exon	29880	29923	29880	ID=Msa1406120-mRNA-1:exon:24434;Parent=Msa1406120-mRNA-1
tig0023193	exon	29427	29714	29427	ID=Msa1406120-mRNA-1:exon:24433;Parent=Msa1406120-mRNA-1
tig0023193	exon	29263	29319	29263	ID=Msa1406120-mRNA-1:exon:24432;Parent=Msa1406120-mRNA-1
tig0023193	exon	29087	29155	29087	ID=Msa1406120-mRNA-1:exon:24431;Parent=Msa1406120-mRNA-1
tig0023193	exon	28584	28727	28584	ID=Msa1406120-mRNA-1:exon:24430;Parent=Msa1406120-mRNA-1
tig0023193	CDS	38576	38584	38576	ID=Msa1406120-mRNA-1:cds;Parent=Msa1406120-mRNA-1
tig0023193	CDS	38298	38393	38298	ID=Msa1406120-mRNA-1:cds;Parent=Msa1406120-mRNA-1
tig0023193	CDS	38169	38238	38169	ID=Msa1406120-mRNA-1:cds;Parent=Msa1406120-mRNA-1
tig0023193	CDS	37989	38032	37989	ID=Msa1406120-mRNA-1:cds;Parent=Msa1406120-mRNA-1
tig0023193	CDS	37580	37813	37580	ID=Msa1406120-mRNA-1:cds;Parent=Msa1406120-mRNA-1
tig0023193	CDS	37416	37472	37416	ID=Msa1406120-mRNA-1:cds;Parent=Msa1406120-mRNA-1
tig0023193	CDS	37240	37308	37240	ID=Msa1406120-mRNA-1:cds;Parent=Msa1406120-mRNA-1
tig0023193	CDS	36710	36828	36710	ID=Msa1406120-mRNA-1:cds;Parent=Msa1406120-mRNA-1
tig0023193	CDS	30014	30213	30014	ID=Msa1406120-mRNA-1:cds;Parent=Msa1406120-mRNA-1
tig0023193	CDS	29880	29923	29880	ID=Msa1406120-mRNA-1:cds;Parent=Msa1406120-mRNA-1
tig0023193	CDS	29427	29714	29427	ID=Msa1406120-mRNA-1:cds;Parent=Msa1406120-mRNA-1
tig0023193	CDS	29263	29319	29263	ID=Msa1406120-mRNA-1:cds;Parent=Msa1406120-mRNA-1
tig0023193	CDS	29087	29155	29087	ID=Msa1406120-mRNA-1:cds;Parent=Msa1406120-mRNA-1
tig0023193	CDS	28584	28727	28584	ID=Msa1406120-mRNA-1:cds;Parent=Msa1406120-mRNA-1

Gene Sequence

>Msa1406120

ATGGTGCACGTTTTCAATTCAACAACAACTCAGAAAAGAAAACCTAAGGTTCCGCCGAATCGAAGGAATTTCCGAAGAGAGGAGAAGAAAAAAGAGGATTTTAGGGTTTTCAATTCAACAACTCGTTCGTTCCCATGGGTGGAGGCAGCAAAAGCCGAACAAAAAAGAAATCCAACATCTTCTGAACGTCAATCTATTTATGATCAGATTTATCGTCAGGTACTATCTGATATACAAGCCAAAAAAGTAGCAGAAGAAGAGGAAGCCCGTCGATTAGCTGAAGAGGCTCTTGCTCAAAAAAAACTGCAGGCCCGCAAAGCAAAAGAGGCAGCAGAAAAGACTCTTGCTCTAAATTCACTCTGGTCATTGGCTGATGCAATGCGCTGTCGTTCCTACCCAAACATGACTACAAAAACGCTTTTTCTAAAACTTGCAAAATCTACAAACACAGCCCTGGACCATGAAGATGATACGCTTTTTCGAAAACTTGCAAAAGCTACAAACACAGCCCTGGACCATGAAGATGATACAGCTTCACCAATTCAACCTGTGCACATGCCAACACAATATGGCAAGGAGGTCAACTACGAAAATGATATGAAGCCCTTGGATGCCAGCAGCAGCCAGCCGTTGGATGAGCTCAACAAGTCAACACAAAACGTTAGCCTTGAGGATAAAGCTGCTGTTCAGGAGGGGGGGGTTCCGCCGAATCCAAGGAATTTCAGAAGAGAAGAGAAGAAAAGAGAGGATTTTAGGGTGAAATTTCCATTTCCTAATCATTCTCTTTCTTCGATTCTGTCCTTTTCAGGTTTTCAATTCAACAACTCGTTCGTTCCCATGGGTGGAGGCAGCAAAAGCCGAACAAAAAAGAAATCCAAGTCTAAGAAGAAGAAACTGACATCTTCTGAACATCAATCTATTTATGATCAGATTTATCGTCAGGTACTATCTGATATAGAAGCCAAAAAAGTAGCAGAAGAAGAGGAAGCCCGTCGATTAGCAGAAGAGGCTCTTGCTAAAAAAAAAGCAGAAGAAGAGGAAGCCCGTCGATTAGCAAAAGAGGCTCTTGCTCAAAAAAAACTGCAGGCCCGCAAAGCAAAAGAGGCAGCAGAAAAGACTCTTGCTCTAAATTCACTCTGGTCATTAGCTGATGCAATGCGCTGTCGTTCCTACCCAAACATGACTACAAAAACGCTTTTTCTAAAACTTGCAAAATCTACAAACACAGCCCTGGACCATGAAGATGATACGCTTTTTCGAAAACTTGCAAAAGCTACAAACAAAGCCCTGGACCATGAAGATGATACAGCTTCACCAATTCAACCTGTGCACATGCCAACACAATATGGCAAGGAGGTCAACTATGAAAATGATATGAAGCCCTTGGATGCCAGCAGCAGCCAGCCGTTGGATGAGCTCAACAAGTCAACACAAAACGTTAGCCTTGAGGATAAAGCTGCTTTTCAGGAAGGGGCTATTGGCAGCGCCCAACTACTCTAG

Protein sequence

>Msa1406120

MVHVFNSTTTQKRKPKVPPNRRNFRREEKKKEDFRVFNSTTRSFPWVEAAKAEQKRNPTSSERQSIYDQIYRQVLSDIQAKKVAEEEEARRLAEEALAQKKLQARKAKEAAEKTLALNSLWSLADAMRCRSYPNMTTKTLFLKLAKSTNTALDHEDDTLFRKLAKATNTALDHEDDTASPIQPVHMPTQYGKEVNYENDMKPLDASSSQPLDELNKSTQNVSLEDKAAVQEGGVPPNPRNFRREEKKREDFRVKFPFPNHSLSSILSFSGFQFNNSFVPMGGGSKSRTKKKSKSKKKKLTSSEHQSIYDQIYRQVLSDIEAKKVAEEEEARRLAEEALAKKKAEEEEARRLAKEALAQKKLQARKAKEAAEKTLALNSLWSLADAMRCRSYPNMTTKTLFLKLAKSTNTALDHEDDTLFRKLAKATNKALDHEDDTASPIQPVHMPTQYGKEVNYENDMKPLDASSSQPLDELNKSTQNVSLEDKAAFQEGAIGSAQLL*