AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1007520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1007520 MtrunA17_Chr7g0217881 93.348 466 31 0 1 466 1 466 0.0 878
Msa1007520 MtrunA17_Chr6g0453951 74.227 485 106 2 1 466 47 531 0.0 758
Msa1007520 MtrunA17_Chr6g0454401 75.413 484 100 2 1 465 1 484 0.0 749
Msa1007520 MtrunA17_Chr6g0454361 74.214 477 105 1 8 466 9 485 0.0 723
Msa1007520 MtrunA17_Chr6g0454191 71.488 484 119 2 1 465 1 484 0.0 720
Msa1007520 MtrunA17_Chr6g0454351 71.399 486 102 3 1 466 1 469 0.0 714
Msa1007520 MtrunA17_Chr6g0453961 70.309 485 125 1 1 466 10 494 0.0 712
Msa1007520 MtrunA17_Chr6g0454181 69.358 483 130 1 1 465 1 483 0.0 707
Msa1007520 MtrunA17_Chr6g0454331 69.375 480 127 2 6 465 3 482 0.0 698
Msa1007520 MtrunA17_Chr6g0452771 71.901 484 118 1 1 466 1 484 0.0 698
Msa1007520 MtrunA17_Chr6g0454261 69.565 483 129 1 1 465 1 483 0.0 692
Msa1007520 MtrunA17_Chr6g0454211 69.710 482 128 1 2 465 289 770 0.0 686
Msa1007520 MtrunA17_Chr6g0454211 48.711 349 79 4 131 461 1 267 6.40e-95 303
Msa1007520 MtrunA17_Chr6g0454141 69.151 483 131 1 1 465 1 483 0.0 684
Msa1007520 MtrunA17_Chr6g0454301 69.565 483 125 3 1 464 254 733 0.0 684
Msa1007520 MtrunA17_Chr6g0454301 77.632 228 51 0 233 460 1 228 1.94e-124 379
Msa1007520 MtrunA17_Chr6g0454291 70.860 477 121 1 6 464 3 479 0.0 684
Msa1007520 MtrunA17_Chr8g0359821 69.358 483 128 2 1 465 1 481 0.0 682
Msa1007520 MtrunA17_Chr6g0454201 72.269 476 114 1 8 465 9 484 0.0 682
Msa1007520 MtrunA17_Chr3g0078841 68.388 484 131 3 1 465 1 481 0.0 681
Msa1007520 MtrunA17_Chr8g0336331 68.182 484 131 4 1 465 1 480 0.0 677
Msa1007520 MtrunA17_Chr6g0454341 67.975 484 133 3 1 465 1 481 0.0 675
Msa1007520 MtrunA17_Chr6g0454121 69.565 483 128 2 1 465 1 482 0.0 668
Msa1007520 MtrunA17_Chr6g0454321 67.789 475 131 3 1 456 1 472 0.0 661
Msa1007520 MtrunA17_Chr6g0454321 68.800 125 39 0 2 126 496 620 5.71e-51 183
Msa1007520 MtrunA17_Chr5g0423981 68.455 466 130 3 1 466 1 449 0.0 658
Msa1007520 MtrunA17_Chr6g0454151 67.835 485 134 3 1 466 1 482 0.0 649
Msa1007520 MtrunA17_Chr6g0454131 67.288 483 139 2 1 465 1 482 0.0 642
Msa1007520 MtrunA17_Chr6g0454251 65.394 393 118 1 6 380 3 395 0.0 540
Msa1007520 MtrunA17_Chr3g0092641 52.731 476 197 7 9 463 11 479 1.32e-174 498
Msa1007520 MtrunA17_Chr5g0426431 52.731 476 197 7 10 464 12 480 7.00e-171 489
Msa1007520 MtrunA17_Chr2g0278711 50.104 481 210 6 7 465 8 480 6.31e-165 474
Msa1007520 MtrunA17_Chr6g0454271 71.379 290 83 0 176 465 1 290 2.63e-157 447
Msa1007520 MtrunA17_Chr8g0355011 57.360 394 103 5 92 465 17 365 3.08e-152 437
Msa1007520 MtrunA17_Chr3g0118711 45.303 479 236 5 5 462 8 481 5.03e-152 441
Msa1007520 MtrunA17_Chr3g0118771 45.397 478 235 5 6 462 17 489 6.70e-152 441
Msa1007520 MtrunA17_Chr3g0118671 44.676 479 239 5 5 462 1 474 3.83e-151 439
Msa1007520 MtrunA17_Chr3g0118691 44.191 482 243 5 5 465 10 486 1.08e-150 438
Msa1007520 MtrunA17_Chr4g0050341 47.193 481 228 5 8 465 17 494 1.00e-148 433
Msa1007520 MtrunA17_Chr6g0454171 62.941 340 96 3 131 466 1 314 2.81e-148 425
Msa1007520 MtrunA17_Chr3g0118701 43.633 479 244 5 5 462 10 483 9.91e-148 430
Msa1007520 MtrunA17_Chr6g0454221 82.969 229 38 1 233 460 1 229 2.33e-137 397
Msa1007520 MtrunA17_Chr3g0118751 43.096 478 219 7 5 462 1 445 3.17e-136 399
Msa1007520 MtrunA17_Chr3g0118661 43.460 474 243 4 6 459 9 477 1.19e-130 387
Msa1007520 MtrunA17_Chr6g0453981 71.429 231 48 1 131 343 1 231 5.28e-112 330
Msa1007520 MtrunA17_Chr5g0426401 52.244 312 141 5 155 463 6 312 7.75e-108 322
Msa1007520 MtrunA17_Chr6g0454231 65.098 255 50 3 209 462 3 219 8.05e-104 317
Msa1007520 MtrunA17_Chr6g0454231 59.167 240 77 2 1 222 241 477 1.27e-88 278
Msa1007520 MtrunA17_Chr6g0454371 81.609 174 32 0 292 465 1 174 8.38e-103 304
Msa1007520 MtrunA17_Chr3g0118721 49.488 293 145 2 176 465 1 293 1.57e-101 305
Msa1007520 MtrunA17_Chr3g0112771 37.500 472 255 9 5 462 7 452 2.13e-101 311
Msa1007520 MtrunA17_Chr6g0453941 68.468 222 51 2 132 334 54 275 3.50e-100 301
Msa1007520 MtrunA17_Chr6g0453941 69.841 63 14 2 1 62 1 59 6.12e-19 86.7
Msa1007520 MtrunA17_Chr5g0412111 36.000 475 265 9 9 461 4 461 2.36e-96 298
Msa1007520 MtrunA17_Chr8g0336271 57.258 248 84 3 1 230 1 244 2.27e-93 284
Msa1007520 MtrunA17_Chr5g0412131 35.908 479 261 9 9 461 11 469 1.64e-92 288
Msa1007520 MtrunA17_Chr5g0412101 35.565 478 265 12 9 461 11 470 5.87e-89 279
Msa1007520 MtrunA17_Chr6g0454281 70.115 174 52 0 1 174 1 174 5.01e-86 263
Msa1007520 MtrunA17_Chr3g0112761 34.047 467 266 11 12 462 10 450 2.14e-81 259
Msa1007520 MtrunA17_Chr8g0336261 80.292 137 27 0 292 428 1 137 1.46e-79 243
Msa1007520 MtrunA17_Chr4g0032331 33.191 467 270 12 12 462 10 450 1.50e-77 249
Msa1007520 MtrunA17_Chr1g0207981 31.590 478 287 12 10 463 13 474 6.31e-77 248
Msa1007520 MtrunA17_Chr6g0464881 30.608 477 293 11 4 465 5 458 5.15e-73 237
Msa1007520 MtrunA17_Chr3g0098111 31.501 473 291 10 10 461 9 469 5.96e-73 238
Msa1007520 MtrunA17_Chr7g0218831 30.670 463 277 10 9 458 5 436 1.26e-70 230
Msa1007520 MtrunA17_Chr5g0414331 31.466 464 285 12 6 458 9 450 6.48e-70 229
Msa1007520 MtrunA17_Chr7g0249981 32.181 463 280 12 4 454 19 459 5.62e-69 228
Msa1007520 MtrunA17_Chr8g0380531 32.543 464 285 11 10 461 10 457 8.38e-69 226
Msa1007520 MtrunA17_Chr8g0365811 31.340 485 286 14 12 466 497 964 1.18e-68 236
Msa1007520 MtrunA17_Chr8g0365811 31.718 454 265 14 12 435 11 449 7.94e-63 219
Msa1007520 MtrunA17_Chr7g0218791 32.334 467 270 15 9 458 4 441 1.33e-68 225
Msa1007520 MtrunA17_Chr7g0250001 29.787 470 290 10 8 462 4 448 3.07e-68 225
Msa1007520 MtrunA17_Chr4g0053501 29.025 472 299 10 12 464 13 467 3.15e-68 226
Msa1007520 MtrunA17_Chr5g0414321 31.712 473 280 13 6 462 7 452 3.48e-68 225
Msa1007520 MtrunA17_Chr7g0218811 31.317 463 275 11 9 458 14 446 3.74e-68 224
Msa1007520 MtrunA17_Chr7g0218841 32.112 464 270 13 9 458 5 437 5.82e-68 223
Msa1007520 MtrunA17_Chr1g0207971 30.426 470 285 11 10 461 8 453 2.66e-67 222
Msa1007520 MtrunA17_Chr1g0207931 30.704 469 245 12 10 461 92 497 2.67e-67 224
Msa1007520 MtrunA17_Chr6g0464921 30.932 472 285 13 9 463 10 457 3.83e-67 222
Msa1007520 MtrunA17_Chr1g0161351 31.158 475 290 11 10 461 37 497 1.25e-66 222
Msa1007520 MtrunA17_Chr4g0053321 29.959 484 297 13 4 464 18 482 1.35e-66 221
Msa1007520 MtrunA17_Chr1g0207861 32.489 474 285 12 10 461 8 468 3.23e-66 220
Msa1007520 MtrunA17_Chr1g0207831 30.898 479 277 13 12 461 10 463 3.13e-65 217
Msa1007520 MtrunA17_Chr1g0207951 31.524 479 284 13 6 461 651 1108 4.16e-64 224
Msa1007520 MtrunA17_Chr1g0207951 30.655 473 290 10 6 461 119 570 1.09e-63 223
Msa1007520 MtrunA17_Chr6g0464871 30.687 466 289 13 6 458 19 463 5.57e-64 214
Msa1007520 MtrunA17_Chr6g0464861 30.556 468 286 13 6 458 7 450 1.49e-63 212
Msa1007520 MtrunA17_Chr7g0218821 29.424 469 279 12 9 454 4 443 4.58e-63 211
Msa1007520 MtrunA17_Chr5g0431441 31.106 479 274 13 10 462 18 466 6.10e-63 211
Msa1007520 MtrunA17_Chr6g0464841 30.342 468 288 14 6 458 7 451 1.05e-62 210
Msa1007520 MtrunA17_Chr7g0243631 30.143 491 287 15 10 461 13 486 3.38e-60 204
Msa1007520 MtrunA17_Chr7g0243931 30.505 495 288 14 6 461 13 490 9.03e-60 204
Msa1007520 MtrunA17_Chr6g0454111 65.000 140 49 0 173 312 44 183 9.78e-60 194
Msa1007520 MtrunA17_Chr8g0377921 30.309 485 285 18 9 462 2 464 1.02e-59 202
Msa1007520 MtrunA17_Chr4g0011051 32.000 500 283 17 5 462 4 488 1.60e-59 203
Msa1007520 MtrunA17_Chr7g0275681 31.224 490 290 16 5 462 7 481 2.47e-59 202
Msa1007520 MtrunA17_Chr7g0243951 29.735 491 296 16 6 461 7 483 6.08e-59 201
Msa1007520 MtrunA17_Chr4g0044511 30.143 491 296 15 6 466 36 509 1.19e-57 198
Msa1007520 MtrunA17_Chr5g0401721 29.079 478 296 14 12 462 10 471 1.91e-57 197
Msa1007520 MtrunA17_Chr7g0265041 29.091 495 301 13 9 465 10 492 6.40e-57 196
Msa1007520 MtrunA17_Chr7g0249931 28.632 468 292 13 4 454 34 476 2.09e-56 194
Msa1007520 MtrunA17_Chr7g0243681 29.158 487 286 16 10 458 11 476 4.66e-56 193
Msa1007520 MtrunA17_Chr7g0265151 28.866 485 304 13 10 462 9 484 6.57e-56 193
Msa1007520 MtrunA17_Chr7g0265101 29.142 501 293 15 8 464 7 489 1.15e-55 192
Msa1007520 MtrunA17_Chr5g0426411 55.030 169 70 3 8 175 10 173 2.08e-55 182
Msa1007520 MtrunA17_Chr5g0419761 29.191 507 294 18 7 466 6 494 3.68e-55 191
Msa1007520 MtrunA17_Chr3g0121991 30.816 490 278 18 10 461 79 545 1.52e-54 191
Msa1007520 MtrunA17_Chr3g0122001 30.063 479 296 10 10 461 486 952 1.78e-54 196
Msa1007520 MtrunA17_Chr3g0122001 30.165 484 290 14 10 461 6 473 2.17e-52 190
Msa1007520 MtrunA17_Chr7g0243861 28.974 497 304 16 6 466 10 493 2.23e-54 189
Msa1007520 MtrunA17_Chr4g0060511 29.352 494 298 17 6 461 7 487 6.28e-54 188
Msa1007520 MtrunA17_Chr5g0393591 29.336 467 267 11 10 461 17 435 1.85e-53 186
Msa1007520 MtrunA17_Chr5g0431361 29.167 480 274 13 10 461 12 453 2.69e-53 185
Msa1007520 MtrunA17_Chr7g0243771 28.630 489 293 16 10 461 6 475 1.68e-52 184
Msa1007520 MtrunA17_Chr7g0265141 29.615 493 292 13 10 462 9 486 4.84e-52 182
Msa1007520 MtrunA17_Chr8g0366391 29.243 489 289 16 10 461 9 477 7.08e-52 182
Msa1007520 MtrunA17_Chr5g0419771 28.175 504 285 16 10 462 36 513 1.65e-51 182
Msa1007520 MtrunA17_Chr7g0243801 27.439 492 303 14 6 461 3 476 3.60e-51 180
Msa1007520 MtrunA17_Chr7g0232401 27.926 487 279 13 7 452 3 458 5.21e-51 179
Msa1007520 MtrunA17_Chr7g0265051 28.854 506 286 18 8 464 7 487 1.07e-50 179
Msa1007520 MtrunA17_Chr8g0377941 30.165 484 275 17 12 462 9 462 3.71e-50 177
Msa1007520 MtrunA17_Chr7g0243871 28.163 490 296 16 6 461 5 472 4.17e-50 177
Msa1007520 MtrunA17_Chr5g0431371 29.202 476 276 14 10 461 10 448 4.60e-50 176
Msa1007520 MtrunA17_Chr6g0462531 27.721 487 291 13 8 459 2 462 8.32e-50 176
Msa1007520 MtrunA17_Chr6g0454381 60.563 142 38 1 131 254 1 142 9.88e-50 166
Msa1007520 MtrunA17_Chr1g0179901 26.707 498 301 17 10 462 16 494 2.75e-49 176
Msa1007520 MtrunA17_Chr8g0335141 29.116 498 283 15 3 461 2 468 3.51e-49 174
Msa1007520 MtrunA17_Chr4g0072761 28.172 465 294 11 10 461 15 452 4.60e-49 174
Msa1007520 MtrunA17_Chr3g0106231 28.358 469 286 10 10 462 18 452 5.01e-49 174
Msa1007520 MtrunA17_Chr5g0431401 27.907 473 286 13 10 461 10 448 5.48e-49 174
Msa1007520 MtrunA17_Chr7g0235051 28.661 478 266 15 10 454 11 446 8.63e-49 173
Msa1007520 MtrunA17_Chr7g0232391 27.198 489 294 14 7 460 3 464 1.28e-48 173
Msa1007520 MtrunA17_Chr4g0014061 28.838 482 283 13 13 458 12 469 1.58e-48 173
Msa1007520 MtrunA17_Chr1g0173121 27.368 475 292 14 12 461 16 462 2.40e-48 172
Msa1007520 MtrunA17_Chr6g0462521 31.471 340 202 9 136 459 124 448 5.48e-48 171
Msa1007520 MtrunA17_Chr5g0431421 28.302 477 281 13 10 462 10 449 7.07e-48 171
Msa1007520 MtrunA17_Chr6g0462541 29.762 336 194 8 148 457 140 459 1.00e-47 171
Msa1007520 MtrunA17_Chr4g0044501 28.106 491 289 15 10 461 10 475 1.01e-47 171
Msa1007520 MtrunA17_Chr7g0243851 27.607 489 264 14 8 461 9 442 1.15e-47 170
Msa1007520 MtrunA17_Chr4g0072771 26.981 467 306 9 7 461 22 465 1.17e-47 170
Msa1007520 MtrunA17_Chr5g0401851 28.000 500 290 15 8 461 8 483 1.23e-47 171
Msa1007520 MtrunA17_Chr6g0462571 28.736 348 206 7 136 457 126 457 1.28e-47 171
Msa1007520 MtrunA17_Chr8g0355221 27.536 483 306 14 11 461 16 486 1.68e-47 171
Msa1007520 MtrunA17_Chr5g0448551 27.169 438 281 10 7 429 4 418 1.83e-47 169
Msa1007520 MtrunA17_Chr7g0243781 26.380 489 295 13 10 458 9 472 2.82e-47 170
Msa1007520 MtrunA17_Chr1g0159551 27.119 472 288 16 15 461 19 459 3.82e-47 169
Msa1007520 MtrunA17_Chr8g0373301 30.250 400 226 14 70 437 64 442 1.33e-46 167
Msa1007520 MtrunA17_Chr6g0449931 28.252 492 287 16 8 461 4 467 1.50e-46 167
Msa1007520 MtrunA17_Chr5g0428081 27.801 482 299 15 13 461 14 479 1.70e-46 167
Msa1007520 MtrunA17_Chr7g0232411 27.016 496 286 17 7 460 3 464 1.86e-46 167
Msa1007520 MtrunA17_Chr4g0066131 28.361 476 291 13 13 458 16 471 2.09e-46 167
Msa1007520 MtrunA17_Chr8g0347281 29.979 467 260 16 9 440 17 451 5.52e-46 166
Msa1007520 MtrunA17_Chr7g0249961 37.607 234 136 5 226 454 24 252 5.58e-46 160
Msa1007520 MtrunA17_Chr7g0243761 27.579 475 290 13 10 461 11 454 5.94e-46 166
Msa1007520 MtrunA17_Chr4g0066221 27.731 476 302 15 13 458 14 477 6.57e-46 166
Msa1007520 MtrunA17_Chr5g0440421 28.684 509 301 22 1 462 1 494 1.21e-45 166
Msa1007520 MtrunA17_Chr6g0462551 27.329 483 286 16 12 457 6 460 1.32e-45 165
Msa1007520 MtrunA17_Chr7g0275511 28.484 488 266 18 9 450 14 464 1.48e-45 165
Msa1007520 MtrunA17_Chr8g0347271 29.130 460 273 14 9 440 18 452 2.30e-45 164
Msa1007520 MtrunA17_Chr2g0294931 26.458 480 310 13 13 461 14 481 2.99e-45 164
Msa1007520 MtrunA17_Chr7g0232311 27.721 487 292 14 5 458 1 460 4.47e-45 163
Msa1007520 MtrunA17_Chr6g0463851 26.681 476 301 13 13 454 14 475 4.94e-45 164
Msa1007520 MtrunA17_Chr1g0165701 27.733 494 288 16 11 461 16 483 5.78e-45 164
Msa1007520 MtrunA17_Chr8g0335161 31.858 339 193 9 142 461 147 466 1.12e-44 162
Msa1007520 MtrunA17_Chr6g0463891 27.778 486 300 16 12 461 14 484 2.87e-44 162
Msa1007520 MtrunA17_Chr5g0427561 76.136 88 21 0 378 465 1 88 2.96e-44 150
Msa1007520 MtrunA17_Chr6g0459311 32.333 300 172 7 179 460 184 470 8.36e-44 160
Msa1007520 MtrunA17_Chr4g0066151 27.637 474 297 12 13 458 21 476 9.04e-44 160
Msa1007520 MtrunA17_Chr8g0374931 26.819 481 307 13 13 461 14 481 9.45e-44 160
Msa1007520 MtrunA17_Chr8g0336691 30.000 370 217 9 121 460 1021 1378 1.07e-43 165
Msa1007520 MtrunA17_Chr8g0336691 27.778 504 283 15 2 460 5 472 1.33e-42 161
Msa1007520 MtrunA17_Chr8g0336691 27.572 486 273 18 7 464 477 911 1.19e-36 144
Msa1007520 MtrunA17_Chr5g0432731 32.372 312 175 9 167 462 6 297 1.23e-43 155
Msa1007520 MtrunA17_Chr7g0218311 26.875 480 305 11 13 461 19 483 1.60e-43 160
Msa1007520 MtrunA17_Chr8g0370941 26.901 513 284 17 7 459 5 486 1.70e-43 160
Msa1007520 MtrunA17_Chr8g0382021 28.059 474 290 15 15 461 39 488 2.03e-43 159
Msa1007520 MtrunA17_Chr2g0294921 28.184 479 303 15 13 461 163 630 2.03e-43 162
Msa1007520 MtrunA17_Chr5g0416741 26.884 491 296 13 12 461 15 483 2.17e-43 159
Msa1007520 MtrunA17_Chr8g0336741 27.484 473 266 14 10 440 13 450 2.27e-43 159
Msa1007520 MtrunA17_Chr1g0153451 28.231 503 277 19 5 464 1 462 3.95e-43 158
Msa1007520 MtrunA17_Chr5g0416821 27.848 474 302 14 12 461 16 473 4.93e-43 158
Msa1007520 MtrunA17_Chr8g0339631 29.380 371 207 11 121 454 109 461 6.22e-43 158
Msa1007520 MtrunA17_Chr8g0336651 28.343 501 280 17 7 464 778 1242 1.18e-42 161
Msa1007520 MtrunA17_Chr8g0336651 26.908 498 287 15 5 460 1 463 1.93e-40 155
Msa1007520 MtrunA17_Chr8g0336651 33.083 266 137 6 207 464 541 773 2.80e-34 137
Msa1007520 MtrunA17_Chr5g0410941 26.834 477 308 12 13 461 26 489 1.22e-42 157
Msa1007520 MtrunA17_Chr5g0420801 27.766 479 294 15 6 458 3 455 1.70e-42 156
Msa1007520 MtrunA17_Chr8g0339461 30.812 357 195 11 121 440 109 450 6.15e-42 155
Msa1007520 MtrunA17_Chr6g0486251 31.333 300 175 7 179 460 177 463 7.36e-42 154
Msa1007520 MtrunA17_Chr6g0486201 31.333 300 175 7 179 460 177 463 7.36e-42 154
Msa1007520 MtrunA17_Chr8g0361371 26.572 493 296 15 7 460 4 469 1.19e-41 154
Msa1007520 MtrunA17_Chr7g0232331 27.119 472 276 16 7 440 3 444 1.20e-41 154
Msa1007520 MtrunA17_Chr7g0265111 26.667 495 304 14 10 462 39 516 2.21e-41 154
Msa1007520 MtrunA17_Chr4g0066201 28.893 488 274 18 13 461 21 474 3.03e-41 153
Msa1007520 MtrunA17_Chr4g0066261 28.163 490 283 15 13 458 14 478 4.43e-41 153
Msa1007520 MtrunA17_Chr2g0329111 27.823 496 292 18 7 458 3 476 5.15e-41 153
Msa1007520 MtrunA17_Chr8g0369341 27.479 484 301 14 6 459 3 466 5.37e-41 152
Msa1007520 MtrunA17_Chr5g0429711 28.719 484 290 17 5 461 6 461 5.56e-41 152
Msa1007520 MtrunA17_Chr7g0232341 30.945 307 176 9 168 452 170 462 7.12e-41 152
Msa1007520 MtrunA17_Chr4g0066281 29.607 483 269 15 13 458 15 463 8.62e-41 152
Msa1007520 MtrunA17_Chr8g0339451 30.532 357 196 11 121 440 101 442 1.17e-40 151
Msa1007520 MtrunA17_Chr8g0336731 29.810 369 217 9 121 460 134 489 1.31e-40 152
Msa1007520 MtrunA17_Chr3g0079731 26.078 487 305 12 12 459 8 478 3.81e-39 147
Msa1007520 MtrunA17_Chr6g0463861 26.446 484 307 14 13 466 14 478 5.60e-39 147
Msa1007520 MtrunA17_Chr5g0448521 27.054 499 289 15 7 462 2 468 8.22e-39 146
Msa1007520 MtrunA17_Chr8g0374901 25.726 482 301 16 13 458 15 475 1.23e-38 146
Msa1007520 MtrunA17_Chr5g0442561 25.948 501 297 17 7 462 2 473 1.79e-38 145
Msa1007520 MtrunA17_Chr8g0339601 33.594 256 132 7 211 440 66 309 3.41e-38 142
Msa1007520 MtrunA17_Chr2g0294941 29.888 358 198 13 124 442 17 360 5.61e-38 142
Msa1007520 MtrunA17_Chr5g0442491 25.000 504 300 14 7 462 2 475 5.87e-38 144
Msa1007520 MtrunA17_Chr4g0042931 27.835 485 287 16 10 460 7 462 1.01e-37 143
Msa1007520 MtrunA17_Chr8g0374971 26.514 479 303 12 13 458 15 477 1.10e-37 144
Msa1007520 MtrunA17_Chr5g0403641 32.203 295 157 9 196 459 218 500 1.23e-37 144
Msa1007520 MtrunA17_Chr4g0044481 28.162 419 231 14 10 404 27 399 3.35e-37 141
Msa1007520 MtrunA17_Chr4g0044521 26.411 496 292 19 5 459 1 464 3.56e-37 142
Msa1007520 MtrunA17_Chr5g0442521 24.597 496 305 17 7 458 2 472 3.73e-37 142
Msa1007520 MtrunA17_Chr4g0066171 28.106 491 295 16 2 461 13 476 4.15e-37 142
Msa1007520 MtrunA17_Chr8g0334851 27.920 351 207 10 122 440 112 448 5.92e-37 141
Msa1007520 MtrunA17_Chr7g0243711 34.959 246 140 7 234 461 73 316 1.35e-36 137
Msa1007520 MtrunA17_Chr5g0442601 26.680 506 291 19 7 462 401 876 1.67e-36 143
Msa1007520 MtrunA17_Chr5g0442601 24.855 346 197 8 81 402 27 333 8.06e-23 102
Msa1007520 MtrunA17_Chr8g0374941 26.240 484 298 13 13 458 952 1414 1.93e-36 143
Msa1007520 MtrunA17_Chr8g0374941 25.373 469 289 13 13 442 14 460 4.55e-34 136
Msa1007520 MtrunA17_Chr8g0374941 26.013 469 286 17 13 442 479 925 4.64e-34 136
Msa1007520 MtrunA17_Chr5g0442541 25.301 498 297 14 7 462 2 466 2.16e-36 139
Msa1007520 MtrunA17_Chr4g0042891 31.698 265 152 7 213 460 212 464 3.25e-36 139
Msa1007520 MtrunA17_Chr8g0350881 25.263 475 316 11 12 458 14 477 5.17e-36 139
Msa1007520 MtrunA17_Chr3g0106251 30.903 288 175 5 184 462 22 294 5.44e-36 135
Msa1007520 MtrunA17_Chr8g0339441 36.979 192 101 4 269 440 217 408 9.03e-36 137
Msa1007520 MtrunA17_Chr8g0334861 28.165 316 182 8 169 460 168 462 1.08e-35 137
Msa1007520 MtrunA17_Chr1g0153461 36.190 210 117 4 268 460 2 211 1.61e-35 131
Msa1007520 MtrunA17_Chr8g0334831 26.891 476 282 17 5 437 1 453 1.99e-35 137
Msa1007520 MtrunA17_Chr5g0431431 32.830 265 153 7 167 427 110 353 4.66e-35 134
Msa1007520 MtrunA17_Chr5g0442581 25.737 509 292 17 7 462 2 477 1.87e-34 135
Msa1007520 MtrunA17_Chr7g0243611 32.168 286 175 11 131 408 3 277 1.97e-34 130
Msa1007520 MtrunA17_Chr8g0336251 27.443 481 285 19 10 458 7 455 2.16e-33 131
Msa1007520 MtrunA17_Chr7g0241781 26.757 441 274 16 7 438 6 406 2.39e-33 130
Msa1007520 MtrunA17_Chr5g0429681 30.435 368 203 14 122 458 151 496 2.82e-33 131
Msa1007520 MtrunA17_Chr8g0336321 27.443 481 285 19 10 458 7 455 3.53e-33 130
Msa1007520 MtrunA17_Chr7g0243911 37.037 189 102 3 265 436 17 205 1.34e-32 123
Msa1007520 MtrunA17_Chr2g0307961 25.502 498 295 16 6 463 9 470 1.81e-32 129
Msa1007520 MtrunA17_Chr2g0302991 27.717 368 223 11 122 461 110 462 4.70e-32 127
Msa1007520 MtrunA17_Chr7g0241801 26.879 439 276 15 7 438 6 406 6.07e-32 126
Msa1007520 MtrunA17_Chr7g0243811 25.366 410 254 12 22 408 1 381 1.18e-31 125
Msa1007520 MtrunA17_Chr5g0442511 24.644 491 285 20 7 458 46 490 1.31e-31 126
Msa1007520 MtrunA17_Chr2g0302961 25.349 501 289 15 8 461 3 465 3.84e-30 122
Msa1007520 MtrunA17_Chr1g0207881 39.535 129 72 1 339 461 256 384 6.77e-30 120
Msa1007520 MtrunA17_Chr8g0361411 26.434 488 285 19 8 461 6 453 9.79e-30 120
Msa1007520 MtrunA17_Chr6g0482061 26.200 500 284 18 10 460 11 474 2.75e-29 120
Msa1007520 MtrunA17_Chr2g0278721 26.824 466 286 17 6 439 513 955 4.77e-29 121
Msa1007520 MtrunA17_Chr2g0278721 32.370 173 108 4 272 438 274 443 3.33e-21 97.1
Msa1007520 MtrunA17_Chr7g0232351 32.599 227 120 7 168 379 170 378 1.55e-28 116
Msa1007520 MtrunA17_Chr7g0231631 32.129 249 161 5 215 458 11 256 4.23e-28 112
Msa1007520 MtrunA17_Chr7g0250021 28.660 321 207 8 4 317 6 311 1.54e-27 112
Msa1007520 MtrunA17_Chr5g0409591 30.075 266 145 9 206 439 205 461 1.57e-27 114
Msa1007520 MtrunA17_Chr6g0466831 26.013 469 288 16 1 438 1 441 1.76e-27 114
Msa1007520 MtrunA17_Chr8g0367221 26.535 456 289 17 7 437 9 443 3.81e-27 115
Msa1007520 MtrunA17_Chr8g0367221 25.275 455 297 12 7 437 1285 1720 1.86e-25 110
Msa1007520 MtrunA17_Chr8g0367221 24.945 457 296 16 7 437 795 1230 3.11e-24 106
Msa1007520 MtrunA17_Chr6g0454391 70.769 65 19 0 354 418 11 75 3.92e-27 105
Msa1007520 MtrunA17_Chr5g0427571 32.222 270 162 9 198 458 32 289 4.09e-27 110
Msa1007520 MtrunA17_Chr3g0079711 31.720 186 103 4 296 459 3 186 9.78e-27 106
Msa1007520 MtrunA17_Chr6g0466841 25.265 471 289 17 1 438 1 441 9.97e-27 112
Msa1007520 MtrunA17_Chr4g0069611 24.348 460 290 15 6 438 10 438 1.67e-26 111
Msa1007520 MtrunA17_Chr6g0464091 24.569 464 295 14 4 438 11 448 2.44e-26 111
Msa1007520 MtrunA17_Chr3g0092031 32.768 177 110 4 268 438 2 175 9.58e-26 104
Msa1007520 MtrunA17_Chr2g0278741 24.891 458 294 18 6 438 93 525 1.23e-24 107
Msa1007520 MtrunA17_Chr8g0357361 34.634 205 117 7 207 404 57 251 3.99e-24 101
Msa1007520 MtrunA17_Chr8g0337381 39.200 125 70 2 340 460 2 124 1.86e-21 90.1
Msa1007520 MtrunA17_Chr4g0039881 25.589 297 189 10 149 438 144 415 5.44e-21 95.1
Msa1007520 MtrunA17_Chr4g0040691 24.622 463 280 15 10 438 8 435 5.61e-21 95.1
Msa1007520 MtrunA17_Chr3g0118741 59.322 59 24 0 5 63 1 59 7.63e-21 86.3
Msa1007520 MtrunA17_Chr1g0196851 28.800 250 151 9 203 438 240 476 1.45e-20 94.4
Msa1007520 MtrunA17_Chr2g0302851 30.899 178 114 4 267 438 265 439 1.54e-20 94.0
Msa1007520 MtrunA17_Chr4g0066141 37.594 133 69 2 340 458 216 348 4.01e-20 91.7
Msa1007520 MtrunA17_Chr4g0029131 26.482 253 153 9 203 438 200 436 1.55e-18 88.6
Msa1007520 MtrunA17_Chr4g0029151 22.222 459 305 12 4 438 14 444 2.88e-18 87.0
Msa1007520 MtrunA17_Chr4g0040711 27.459 244 151 8 207 438 206 435 6.67e-18 85.9
Msa1007520 MtrunA17_Chr2g0283041 25.403 248 150 7 207 438 205 433 2.31e-15 78.2
Msa1007520 MtrunA17_Chr6g0454241 73.171 41 11 0 421 461 1 41 1.12e-14 69.3
Msa1007520 MtrunA17_Chr2g0319761 25.275 455 287 16 10 438 8 435 1.84e-14 75.5
Msa1007520 MtrunA17_Chr7g0243731 40.278 72 43 0 333 404 2 73 2.22e-14 68.2
Msa1007520 MtrunA17_Chr2g0319751 24.295 461 282 16 10 437 485 911 2.37e-14 75.9
Msa1007520 MtrunA17_Chr7g0267931 75.676 37 8 1 15 50 25 61 9.46e-14 65.9
Msa1007520 MtrunA17_Chr8g0334841 29.193 161 97 4 183 339 11 158 1.16e-13 68.9
Msa1007520 MtrunA17_Chr3g0118731 33.333 117 73 2 62 178 28 139 4.85e-13 67.0
Msa1007520 MtrunA17_Chr2g0319791 22.737 453 299 14 10 437 8 434 5.56e-13 70.9
Msa1007520 MtrunA17_Chr7g0243721 33.333 111 73 1 206 315 25 135 2.00e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1007520 AT1G22380.1 50.833 480 210 5 7 465 10 484 3.91e-176 503
Msa1007520 AT1G22400.1 49.793 482 215 5 6 465 9 485 5.90e-174 497
Msa1007520 AT1G22340.1 50.103 487 214 7 2 464 3 484 5.87e-173 495
Msa1007520 AT1G22360.1 49.793 484 217 5 1 463 1 479 6.22e-169 484
Msa1007520 AT1G22370.2 51.797 473 207 5 7 463 10 477 1.18e-167 481
Msa1007520 AT1G78270.1 47.280 478 226 6 6 462 9 481 1.51e-160 463
Msa1007520 AT1G22360.2 48.140 484 213 6 1 463 1 467 2.25e-159 459
Msa1007520 AT1G22370.1 51.701 294 139 2 173 463 14 307 8.88e-101 304
Msa1007520 AT5G59590.1 37.687 467 249 13 7 458 7 446 1.01e-92 288
Msa1007520 AT5G59580.1 36.076 474 260 11 8 466 7 452 1.06e-88 278
Msa1007520 AT3G46660.1 37.393 468 241 13 12 458 16 452 1.35e-87 275
Msa1007520 AT3G11340.1 33.758 471 264 9 8 462 7 445 9.68e-87 273
Msa1007520 AT3G46670.1 36.052 466 252 12 10 458 9 445 1.81e-86 272
Msa1007520 AT3G46700.1 34.904 467 260 11 7 459 6 442 1.52e-83 265
Msa1007520 AT3G46650.1 34.924 461 261 12 1 456 1 427 4.41e-83 263
Msa1007520 AT5G05900.1 33.689 469 265 13 10 461 8 447 1.23e-80 257
Msa1007520 AT5G05890.1 33.978 465 268 10 10 458 8 449 5.02e-80 256
Msa1007520 AT5G05860.1 33.761 468 269 11 10 463 9 449 5.47e-80 255
Msa1007520 AT3G46680.1 34.105 475 260 13 5 458 4 446 1.67e-79 254
Msa1007520 AT3G46690.1 35.032 471 259 11 7 459 6 447 1.85e-79 254
Msa1007520 AT5G05880.1 32.903 465 275 10 10 461 8 448 4.81e-79 253
Msa1007520 AT3G46720.1 35.193 466 254 12 7 458 6 437 8.48e-77 247
Msa1007520 AT5G05870.1 34.335 466 273 10 10 461 8 454 1.71e-76 247
Msa1007520 AT5G38010.1 33.613 476 264 10 6 459 6 451 1.12e-74 242
Msa1007520 AT3G55700.1 32.211 475 277 14 6 462 4 451 4.18e-74 240
Msa1007520 AT5G38040.1 33.917 457 258 11 19 459 19 447 5.11e-74 240
Msa1007520 AT3G21560.1 30.328 488 285 11 9 464 11 475 4.37e-72 236
Msa1007520 AT2G36970.1 29.857 489 296 14 1 461 1 470 6.64e-71 233
Msa1007520 AT3G02100.1 32.347 473 271 13 8 458 11 456 1.75e-70 231
Msa1007520 AT2G43840.2 32.340 470 280 14 8 464 5 449 3.84e-70 230
Msa1007520 AT4G15490.1 30.103 485 294 12 6 464 4 469 1.73e-69 229
Msa1007520 AT4G15480.1 29.854 479 290 10 10 461 19 478 3.02e-69 229
Msa1007520 AT4G15500.1 30.126 478 288 11 9 462 8 463 3.23e-69 228
Msa1007520 AT2G43820.1 31.847 471 285 16 6 464 3 449 3.60e-69 227
Msa1007520 AT2G43840.1 32.128 470 281 14 8 464 5 449 4.84e-69 227
Msa1007520 AT2G31750.1 31.092 476 281 13 8 462 6 455 1.63e-68 226
Msa1007520 AT2G26480.1 29.350 477 285 10 7 464 5 448 1.82e-68 226
Msa1007520 AT2G31750.2 31.092 476 281 13 8 462 6 455 4.01e-68 226
Msa1007520 AT1G05680.1 31.398 465 282 12 10 458 6 449 4.88e-66 219
Msa1007520 AT3G55710.1 31.185 481 278 16 6 462 4 455 6.74e-66 219
Msa1007520 AT2G31790.1 32.135 473 276 15 7 458 5 453 8.13e-66 219
Msa1007520 AT2G28080.1 31.423 471 285 12 14 464 22 474 1.72e-65 218
Msa1007520 AT4G01070.1 33.267 502 259 16 6 462 4 474 1.11e-63 214
Msa1007520 AT1G05675.1 30.917 469 279 13 10 458 6 449 5.61e-63 211
Msa1007520 AT2G36770.1 29.249 506 291 15 2 462 6 489 1.85e-62 211
Msa1007520 AT2G36800.1 31.313 495 280 17 10 462 12 488 5.31e-60 204
Msa1007520 AT2G36760.1 30.060 499 280 17 10 462 14 489 1.28e-59 203
Msa1007520 AT2G36780.1 29.615 493 290 13 10 462 14 489 1.86e-59 203
Msa1007520 AT2G23250.1 30.388 464 279 13 13 461 1 435 2.05e-59 201
Msa1007520 AT2G36750.1 31.727 498 272 19 10 462 10 484 5.39e-59 202
Msa1007520 AT3G53160.1 30.285 492 288 16 10 462 8 483 1.53e-58 200
Msa1007520 AT4G34131.1 29.592 490 303 15 1 460 1 478 2.00e-57 197
Msa1007520 AT5G17050.1 28.512 484 285 13 6 462 8 457 3.46e-57 196
Msa1007520 AT2G23260.1 30.526 475 286 14 7 463 7 455 9.57e-57 195
Msa1007520 AT2G15480.1 28.862 492 315 11 1 465 1 484 2.42e-56 194
Msa1007520 AT5G17040.1 26.282 468 298 9 10 462 5 440 1.69e-55 191
Msa1007520 AT4G15550.1 29.485 485 285 14 9 460 12 472 1.89e-55 192
Msa1007520 AT2G36790.1 31.600 500 292 16 1 462 1 488 2.19e-55 192
Msa1007520 AT1G05560.1 28.270 474 293 17 9 461 4 451 4.90e-55 191
Msa1007520 AT1G05560.2 28.270 474 293 17 9 461 54 501 9.10e-55 191
Msa1007520 AT2G15480.2 28.486 502 314 12 1 465 1 494 2.13e-54 189
Msa1007520 AT3G53150.1 28.571 504 300 15 7 462 19 510 4.83e-54 189
Msa1007520 AT5G66690.1 28.138 494 282 15 8 460 5 466 6.75e-54 188
Msa1007520 AT1G05530.1 28.099 484 288 15 8 462 3 455 3.87e-53 185
Msa1007520 AT5G26310.1 27.218 496 284 15 8 460 5 466 5.83e-53 185
Msa1007520 AT2G15490.3 29.569 487 300 13 10 465 7 481 7.33e-53 185
Msa1007520 AT2G15490.1 29.388 490 300 13 10 465 7 484 1.76e-52 184
Msa1007520 AT5G17030.1 27.061 473 305 11 6 462 8 456 2.82e-52 183
Msa1007520 AT2G30140.2 28.302 477 286 13 6 461 9 450 2.90e-52 183
Msa1007520 AT2G30140.1 28.243 478 286 13 6 461 9 451 4.05e-52 182
Msa1007520 AT1G01420.2 30.561 481 277 14 9 457 10 465 9.23e-52 182
Msa1007520 AT1G30530.1 28.814 472 280 15 11 459 14 452 9.28e-52 181
Msa1007520 AT1G01420.1 30.561 481 277 14 9 457 7 462 1.10e-51 182
Msa1007520 AT4G14090.1 29.274 468 284 16 6 454 9 448 4.63e-51 179
Msa1007520 AT5G17040.2 30.435 299 180 4 173 462 59 338 5.32e-51 176
Msa1007520 AT4G34138.1 28.600 500 289 15 8 465 9 482 1.70e-50 179
Msa1007520 AT1G24100.1 28.926 484 280 13 8 461 9 458 1.87e-50 178
Msa1007520 AT5G14860.1 29.878 492 291 16 5 461 3 475 1.07e-49 177
Msa1007520 AT2G30150.2 27.197 478 284 14 10 461 13 452 1.57e-46 167
Msa1007520 AT3G22250.1 28.059 474 282 15 5 443 3 452 4.78e-46 166
Msa1007520 AT1G10400.1 27.443 481 299 15 7 460 4 461 1.37e-45 165
Msa1007520 AT4G34135.1 27.699 491 302 15 6 460 7 480 1.97e-45 165
Msa1007520 AT2G30150.1 27.004 474 282 14 14 461 1 436 4.10e-45 163
Msa1007520 AT1G01390.1 28.247 485 290 16 9 460 7 466 1.11e-44 163
Msa1007520 AT1G01390.2 28.247 485 290 16 9 460 24 483 1.14e-44 163
Msa1007520 AT3G50740.1 26.908 498 283 18 8 457 5 469 6.18e-44 161
Msa1007520 AT3G16520.3 29.006 362 216 11 122 459 113 457 7.06e-44 160
Msa1007520 AT3G16520.2 30.321 343 196 11 122 436 113 440 4.34e-43 158
Msa1007520 AT3G16520.1 30.321 343 196 11 122 436 113 440 4.71e-43 158
Msa1007520 AT2G16890.2 27.846 492 282 17 10 461 9 467 1.74e-42 157
Msa1007520 AT5G03490.1 27.789 475 295 16 6 460 15 461 1.57e-41 154
Msa1007520 AT4G36770.1 28.571 476 262 16 10 442 4 444 8.47e-41 152
Msa1007520 AT2G29710.1 26.263 495 293 19 7 462 2 463 5.23e-40 150
Msa1007520 AT5G37950.1 30.214 374 211 12 25 379 1 343 4.92e-39 145
Msa1007520 AT4G15280.1 25.349 501 292 11 12 462 6 474 7.21e-39 147
Msa1007520 AT5G37950.2 29.620 368 215 11 25 379 1 337 8.93e-39 144
Msa1007520 AT4G15280.2 25.299 502 291 12 12 462 38 506 1.17e-38 147
Msa1007520 AT1G73880.1 27.755 490 292 19 6 462 7 467 1.18e-38 146
Msa1007520 AT2G18560.1 31.293 294 151 9 192 454 96 369 1.97e-38 144
Msa1007520 AT2G18570.1 25.253 495 302 16 8 463 3 468 7.21e-37 141
Msa1007520 AT3G21800.1 27.054 499 285 15 12 461 7 475 1.17e-36 141
Msa1007520 AT2G29730.1 26.403 481 300 16 12 462 7 463 3.36e-36 139
Msa1007520 AT3G21750.1 25.806 496 299 14 8 462 2 469 8.34e-36 138
Msa1007520 AT3G21760.1 25.657 495 303 11 12 461 6 480 1.59e-35 138
Msa1007520 AT3G21790.1 26.775 493 298 12 12 461 6 478 4.40e-35 137
Msa1007520 AT5G49690.1 26.697 442 282 16 10 433 10 427 3.06e-34 134
Msa1007520 AT4G15260.1 27.793 367 208 9 135 462 7 355 4.55e-34 131
Msa1007520 AT1G51210.1 27.494 451 269 18 8 436 18 432 4.62e-34 133
Msa1007520 AT1G07250.1 29.856 278 170 7 199 462 207 473 2.17e-33 132
Msa1007520 AT1G07260.1 28.159 277 177 6 199 462 205 472 3.10e-33 131
Msa1007520 AT5G65550.1 25.219 456 295 12 8 439 7 440 4.77e-33 130
Msa1007520 AT2G29740.1 26.639 488 303 13 6 458 4 471 6.36e-33 130
Msa1007520 AT2G16890.3 26.637 443 253 16 10 413 9 418 4.71e-32 127
Msa1007520 AT2G29750.1 26.735 490 295 17 12 462 10 474 5.65e-32 128
Msa1007520 AT3G21780.1 26.854 499 288 17 8 461 2 468 2.94e-31 125
Msa1007520 AT1G07240.1 27.698 278 176 7 201 462 208 476 1.56e-30 124
Msa1007520 AT4G01070.2 31.714 350 178 12 6 329 4 318 2.48e-30 120
Msa1007520 AT5G12890.1 24.950 501 302 20 12 465 12 485 8.73e-29 119
Msa1007520 AT1G06000.1 24.742 485 293 12 1 463 1 435 1.08e-28 118
Msa1007520 AT2G22590.1 25.435 460 287 14 8 437 13 446 3.30e-25 108
Msa1007520 AT4G34135.2 27.381 336 203 12 6 316 7 326 1.11e-21 96.3
Msa1007520 AT4G27570.1 28.415 183 119 5 266 438 244 424 1.07e-17 85.9
Msa1007520 AT2G22930.1 23.318 446 292 12 10 438 6 418 3.29e-17 84.0
Msa1007520 AT4G27560.1 27.869 183 120 5 266 438 244 424 9.03e-17 82.8
Msa1007520 AT1G64910.1 22.768 448 292 17 10 438 6 418 1.28e-16 82.4
Msa1007520 AT2G23210.1 25.000 296 185 11 1 284 1 271 2.10e-15 77.0
Msa1007520 AT4G09500.2 29.412 170 108 5 279 438 251 418 2.39e-15 78.6
Msa1007520 AT4G09500.1 29.412 170 108 5 279 438 226 393 2.40e-15 78.2
Msa1007520 AT5G54010.1 24.078 461 285 19 5 443 1 418 1.01e-14 76.6
Msa1007520 AT5G53990.1 27.119 177 117 5 272 438 244 418 1.59e-14 75.9
Msa1007520 AT5G54060.1 25.821 457 279 20 12 437 15 442 1.76e-14 75.9
Msa1007520 AT3G29630.2 28.977 176 115 4 272 443 220 389 2.66e-13 72.0
Msa1007520 AT3G29630.1 28.977 176 115 4 272 443 246 415 2.89e-13 72.0
Msa1007520 AT1G64920.1 27.072 181 116 6 272 438 244 422 1.48e-12 69.7
Msa1007520 AT1G50580.1 22.757 457 292 16 5 438 1 419 2.95e-11 65.9

Find 100 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAAACTTCTTCATATTAA+AGG 0.147229 7_1:-7066331 Msa1007520:CDS
CATCTTTAGGTTCAAATCTT+TGG 0.169174 7_1:-7065149 Msa1007520:CDS
TTCAATGACCAATTCTAAAA+TGG 0.175074 7_1:+7065329 None:intergenic
CAGATATATCTACAGTTTAT+TGG 0.189008 7_1:+7064754 None:intergenic
AGGATCTACCTGACGTAATA+AGG 0.252720 7_1:-7065371 Msa1007520:CDS
GTAGATATATCTGCAATATA+TGG 0.257183 7_1:-7064744 Msa1007520:CDS
CATAGTAACTTGGCATCTTT+AGG 0.280176 7_1:-7065162 Msa1007520:CDS
TCAGCAACTTGTATGGTAAA+TGG 0.305820 7_1:+7066022 None:intergenic
ATATGCCCTTGAAGAGGATA+TGG 0.330531 7_1:+7066373 None:intergenic
ATTGGAGTTTGCTTGGGGTT+TGG 0.363313 7_1:-7065025 Msa1007520:CDS
GCAACTATTGGAGTTTGCTT+GGG 0.372044 7_1:-7065031 Msa1007520:CDS
ACCGTTGAAAGCGTACTTGC+TGG 0.374267 7_1:-7064814 Msa1007520:CDS
GTATGAACAACCACCGATAC+TGG 0.379700 7_1:+7064585 None:intergenic
GTTGGTGAAAAGAGAAGGAT+TGG 0.388786 7_1:+7065986 None:intergenic
GAATTGATGGTAGGAGATAA+AGG 0.399806 7_1:-7064661 Msa1007520:CDS
AGCAACTATTGGAGTTTGCT+TGG 0.403255 7_1:-7065032 Msa1007520:CDS
CATGACTCCAGAGCAACTAT+TGG 0.406164 7_1:-7065043 Msa1007520:CDS
TCTGTTGTTTATGTGAGTTT+TGG 0.408759 7_1:-7065078 Msa1007520:CDS
AGAGGTTCTAATTCTCTTGA+TGG 0.408792 7_1:-7066253 Msa1007520:CDS
GGCAAAATGCCGTAGAGTTA+AGG 0.409968 7_1:-7064627 Msa1007520:CDS
CCTTTGATTCAAGCCATTCA+AGG 0.414693 7_1:+7065109 None:intergenic
AAACTCAGATGACATAATAA+AGG 0.416128 7_1:+7064945 None:intergenic
TTGATTCCATATCCTCTTCA+AGG 0.418412 7_1:-7066379 Msa1007520:CDS
ATTACAGAACTTTCGATTGA+AGG 0.421093 7_1:-7065391 Msa1007520:CDS
GAAGCTGATCAATGAATTGA+TGG 0.428659 7_1:-7064674 Msa1007520:CDS
ATCTGCAATATATGGGAGAT+TGG 0.432181 7_1:-7064736 Msa1007520:CDS
TTCCCTTCATTATATACCAT+TGG 0.440869 7_1:-7065216 Msa1007520:CDS
TGCTTTCTTCCTTAACTCTA+CGG 0.448459 7_1:+7064618 None:intergenic
GCAAACTCCAATAGTTGCTC+TGG 0.449635 7_1:+7065036 None:intergenic
CCATTGGAGTTAGACCATCT+TGG 0.451949 7_1:+7066203 None:intergenic
TCAATGACCAATTCTAAAAT+GGG 0.453105 7_1:+7065330 None:intergenic
ATTCTCTTCAGCAACTTGTA+TGG 0.457568 7_1:+7066015 None:intergenic
ATTAGGTCTGATCTTGTCAT+TGG 0.460027 7_1:-7064973 Msa1007520:CDS
GGTCCAATGGTATATAATGA+AGG 0.464084 7_1:+7065213 None:intergenic
GTATTGAACCACCCTTCAAT+TGG 0.464768 7_1:-7064868 Msa1007520:CDS
TGTCAAACATTGTACGAAAG+TGG 0.469912 7_1:+7065936 None:intergenic
CTTGGACAAGGTTATTAAGA+AGG 0.471555 7_1:-7064557 Msa1007520:CDS
CCTTGAATGGCTTGAATCAA+AGG 0.473440 7_1:-7065109 Msa1007520:CDS
TAGATATATCTGCAATATAT+GGG 0.475282 7_1:-7064743 Msa1007520:CDS
TCAGAAACTAAGCAAGTAAC+CGG 0.479562 7_1:+7066055 None:intergenic
AGGTCTGATCTTGTCATTGG+CGG 0.480065 7_1:-7064970 Msa1007520:CDS
GGATCTACCTGACGTAATAA+GGG 0.494934 7_1:-7065370 Msa1007520:CDS
TTGAACCACCCTTCAATTGG+TGG 0.497309 7_1:-7064865 Msa1007520:CDS
AACCTCTTGATTTAAGCAAA+CGG 0.503323 7_1:+7066269 None:intergenic
CGATGGTGGTCTTATTCCAC+CGG 0.505135 7_1:-7066074 Msa1007520:CDS
ACATCACCATTACCTTCCAT+TGG 0.505333 7_1:+7066187 None:intergenic
TTCAAGCCATTCAAGGCACT+TGG 0.505945 7_1:+7065116 None:intergenic
GTCTTTGAGACCATCCAAGA+TGG 0.507826 7_1:-7066217 Msa1007520:CDS
TGATTTAGTAATGAAGGTAA+AGG 0.512922 7_1:+7065192 None:intergenic
TTTAGAATTGGTCATTGAAG+TGG 0.513518 7_1:-7065325 Msa1007520:CDS
AAGATACCAAGTGCCTTGAA+TGG 0.515970 7_1:-7065122 Msa1007520:CDS
GTCAAGAATCCACCAATTGA+AGG 0.516692 7_1:+7064856 None:intergenic
AACCGTTTGCTTAAATCAAG+AGG 0.522168 7_1:-7066271 Msa1007520:CDS
GAGATAAAGGAAAGAAGATG+AGG 0.528414 7_1:-7064648 Msa1007520:CDS
AAGAAGTTACATGCACTAGT+TGG 0.534801 7_1:+7065968 None:intergenic
CACTAGTTGGTGAAAAGAGA+AGG 0.540423 7_1:+7065981 None:intergenic
TTAGAATTGGTCATTGAAGT+GGG 0.542970 7_1:-7065324 Msa1007520:CDS
TGGTTGTTCATACATGAACT+TGG 0.545987 7_1:-7064575 Msa1007520:CDS
TCAAAATCCACATAGTAACT+TGG 0.546302 7_1:-7065172 Msa1007520:CDS
AAGAACTTCATCAAACCCTT+CGG 0.552051 7_1:-7066127 Msa1007520:CDS
TCCAGCAAGTACGCTTTCAA+CGG 0.552557 7_1:+7064813 None:intergenic
CAACTATTGGAGTTTGCTTG+GGG 0.553572 7_1:-7065030 Msa1007520:CDS
CTGATCAATGAATTGATGGT+AGG 0.553651 7_1:-7064670 Msa1007520:CDS
CTGGAGTGCCGATGTTGTGT+TGG 0.554307 7_1:-7064795 Msa1007520:CDS
CTAACTCCAATGGAAGGTAA+TGG 0.556057 7_1:-7066193 Msa1007520:CDS
TCTGCAACCCTTATTACGTC+AGG 0.561278 7_1:+7065363 None:intergenic
GCAGAAGAGAACACCAGTAT+CGG 0.561831 7_1:-7064598 Msa1007520:CDS
CCAAGATGGTCTAACTCCAA+TGG 0.563528 7_1:-7066203 Msa1007520:CDS
GTCCAATGGTATATAATGAA+GGG 0.565622 7_1:+7065214 None:intergenic
GATTCTTGACTCATTGTGGA+TGG 0.573721 7_1:-7064843 Msa1007520:CDS
ACAGAGGTCTAATCGCAAGC+TGG 0.582653 7_1:-7064906 Msa1007520:CDS
CTTCATGACTCTGCCGATGG+TGG 0.583652 7_1:-7066088 Msa1007520:CDS
TAATGAAGGTAAAGGTCCAA+TGG 0.584631 7_1:+7065200 None:intergenic
TGGTTCAATACTTGCTCTTG+CGG 0.588307 7_1:+7064880 None:intergenic
TGATTCCATATCCTCTTCAA+GGG 0.591237 7_1:-7066378 Msa1007520:CDS
GGTGGATTCTTGACTCATTG+TGG 0.591311 7_1:-7064847 Msa1007520:CDS
TTTCGTACAATGTTTGACAA+AGG 0.592549 7_1:-7065932 Msa1007520:CDS
TTGGTGAAAAGAGAAGGATT+GGG 0.592979 7_1:+7065987 None:intergenic
CGCAAATGATTACCTTTGAG+CGG 0.593158 7_1:+7065902 None:intergenic
CGGTGGAATAAGACCACCAT+CGG 0.594445 7_1:+7066075 None:intergenic
TCAAGAATCCACCAATTGAA+GGG 0.598039 7_1:+7064857 None:intergenic
GATGGTCTAACTCCAATGGA+AGG 0.600300 7_1:-7066199 Msa1007520:CDS
GGATTTATATGCCCTTGAAG+AGG 0.602809 7_1:+7066367 None:intergenic
AAAGATGCCAAGTTACTATG+TGG 0.604877 7_1:+7065165 None:intergenic
TGGAGTTAGACCATCTTGGA+TGG 0.607818 7_1:+7066207 None:intergenic
GAGAAAGAAATTTCAGACAG+AGG 0.609791 7_1:-7064922 Msa1007520:CDS
CGATACTAATGTGAAGAGAG+AGG 0.613823 7_1:-7064704 Msa1007520:CDS
TATGGAATCAACACAGCATG+TGG 0.620290 7_1:+7066391 None:intergenic
AAAGGTCTAATACCGCTCAA+AGG 0.620948 7_1:-7065914 Msa1007520:intron
ATTGTATTCTGTATTGACAA+AGG 0.621699 7_1:+7066297 None:intergenic
AGACTTCATGACTCTGCCGA+TGG 0.623959 7_1:-7066091 Msa1007520:CDS
TTCATACATGAACTTGGACA+AGG 0.628136 7_1:-7064569 Msa1007520:CDS
TCTAGCAAGAAGTTCACCGA+AGG 0.639421 7_1:+7066111 None:intergenic
TAGTTGCTCTGGAGTCATGA+CGG 0.641575 7_1:+7065047 None:intergenic
GAAACTAAGCAAGTAACCGG+TGG 0.654329 7_1:+7066058 None:intergenic
CTAGCAAGAAGTTCACCGAA+GGG 0.657624 7_1:+7066112 None:intergenic
GAAGAGAACACCAGTATCGG+TGG 0.672004 7_1:-7064595 Msa1007520:CDS
AGAATCCACCAATTGAAGGG+TGG 0.687311 7_1:+7064860 None:intergenic
AGTGTTAAAGATGATAGCAG+AGG 0.689062 7_1:+7065284 None:intergenic
TACTAATGTGAAGAGAGAGG+AGG 0.697666 7_1:-7064701 Msa1007520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGAGAACTTTTAATTTGA+CGG - chr7_1:7065204-7065223 Msa1007520:CDS 20.0%
!! TAGATATATCTGCAATATAT+GGG - chr7_1:7066209-7066228 Msa1007520:CDS 20.0%
!!! AATGAGAACTTTTAATTTGA+CGG - chr7_1:7065204-7065223 Msa1007520:CDS 20.0%
!! TAGATATATCTGCAATATAT+GGG - chr7_1:7066209-7066228 Msa1007520:CDS 20.0%
! GCAAAACTTCTTCATATTAA+AGG - chr7_1:7064621-7064640 Msa1007520:CDS 25.0%
!! ATTGTATTCTGTATTGACAA+AGG + chr7_1:7064658-7064677 None:intergenic 25.0%
!!! ATTGATAATGACTCATTAAC+CGG - chr7_1:7065247-7065266 Msa1007520:CDS 25.0%
!!! TAAAGATCCCATTTTAGAAT+TGG - chr7_1:7065615-7065634 Msa1007520:intron 25.0%
!!! TCAATGACCAATTCTAAAAT+GGG + chr7_1:7065625-7065644 None:intergenic 25.0%
!! TTCAATGACCAATTCTAAAA+TGG + chr7_1:7065626-7065645 None:intergenic 25.0%
! TGATTTAGTAATGAAGGTAA+AGG + chr7_1:7065763-7065782 None:intergenic 25.0%
!!! GGATTTTGATTTAGTAATGA+AGG + chr7_1:7065769-7065788 None:intergenic 25.0%
! AAACTCAGATGACATAATAA+AGG + chr7_1:7066010-7066029 None:intergenic 25.0%
! CAGATATATCTACAGTTTAT+TGG + chr7_1:7066201-7066220 None:intergenic 25.0%
! GTAGATATATCTGCAATATA+TGG - chr7_1:7066208-7066227 Msa1007520:CDS 25.0%
! GCAAAACTTCTTCATATTAA+AGG - chr7_1:7064621-7064640 Msa1007520:CDS 25.0%
!! ATTGTATTCTGTATTGACAA+AGG + chr7_1:7064658-7064677 None:intergenic 25.0%
!!! ATTGATAATGACTCATTAAC+CGG - chr7_1:7065247-7065266 Msa1007520:CDS 25.0%
!!! TAAAGATCCCATTTTAGAAT+TGG - chr7_1:7065615-7065634 Msa1007520:intron 25.0%
!!! TCAATGACCAATTCTAAAAT+GGG + chr7_1:7065625-7065644 None:intergenic 25.0%
!! TTCAATGACCAATTCTAAAA+TGG + chr7_1:7065626-7065645 None:intergenic 25.0%
! TGATTTAGTAATGAAGGTAA+AGG + chr7_1:7065763-7065782 None:intergenic 25.0%
!!! GGATTTTGATTTAGTAATGA+AGG + chr7_1:7065769-7065788 None:intergenic 25.0%
! AAACTCAGATGACATAATAA+AGG + chr7_1:7066010-7066029 None:intergenic 25.0%
! CAGATATATCTACAGTTTAT+TGG + chr7_1:7066201-7066220 None:intergenic 25.0%
! GTAGATATATCTGCAATATA+TGG - chr7_1:7066208-7066227 Msa1007520:CDS 25.0%
AACCTCTTGATTTAAGCAAA+CGG + chr7_1:7064686-7064705 None:intergenic 30.0%
TTTCGTACAATGTTTGACAA+AGG - chr7_1:7065020-7065039 Msa1007520:CDS 30.0%
!!! AGAACTTTTAATTTGACGGT+TGG - chr7_1:7065208-7065227 Msa1007520:CDS 30.0%
ATTACAGAACTTTCGATTGA+AGG - chr7_1:7065561-7065580 Msa1007520:intron 30.0%
! TTTAGAATTGGTCATTGAAG+TGG - chr7_1:7065627-7065646 Msa1007520:intron 30.0%
TTAGAATTGGTCATTGAAGT+GGG - chr7_1:7065628-7065647 Msa1007520:intron 30.0%
TTCCCTTCATTATATACCAT+TGG - chr7_1:7065736-7065755 Msa1007520:intron 30.0%
GTCCAATGGTATATAATGAA+GGG + chr7_1:7065741-7065760 None:intergenic 30.0%
TCAAAATCCACATAGTAACT+TGG - chr7_1:7065780-7065799 Msa1007520:intron 30.0%
! CATCTTTAGGTTCAAATCTT+TGG - chr7_1:7065803-7065822 Msa1007520:intron 30.0%
!! TCTGTTGTTTATGTGAGTTT+TGG - chr7_1:7065874-7065893 Msa1007520:intron 30.0%
!! ATAGCAAGAAACCATTTTTG+TGG - chr7_1:7065953-7065972 Msa1007520:CDS 30.0%
!! AACCATTTTTGTGGATCATT+AGG - chr7_1:7065962-7065981 Msa1007520:CDS 30.0%
ATTGGTTGATCACCAAAAAA+TGG + chr7_1:7066183-7066202 None:intergenic 30.0%
AACCTCTTGATTTAAGCAAA+CGG + chr7_1:7064686-7064705 None:intergenic 30.0%
TTTCGTACAATGTTTGACAA+AGG - chr7_1:7065020-7065039 Msa1007520:CDS 30.0%
!!! AGAACTTTTAATTTGACGGT+TGG - chr7_1:7065208-7065227 Msa1007520:CDS 30.0%
ATTACAGAACTTTCGATTGA+AGG - chr7_1:7065561-7065580 Msa1007520:intron 30.0%
! TTTAGAATTGGTCATTGAAG+TGG - chr7_1:7065627-7065646 Msa1007520:intron 30.0%
TTAGAATTGGTCATTGAAGT+GGG - chr7_1:7065628-7065647 Msa1007520:intron 30.0%
TTCCCTTCATTATATACCAT+TGG - chr7_1:7065736-7065755 Msa1007520:intron 30.0%
GTCCAATGGTATATAATGAA+GGG + chr7_1:7065741-7065760 None:intergenic 30.0%
TCAAAATCCACATAGTAACT+TGG - chr7_1:7065780-7065799 Msa1007520:intron 30.0%
! CATCTTTAGGTTCAAATCTT+TGG - chr7_1:7065803-7065822 Msa1007520:intron 30.0%
!! TCTGTTGTTTATGTGAGTTT+TGG - chr7_1:7065874-7065893 Msa1007520:intron 30.0%
!! ATAGCAAGAAACCATTTTTG+TGG - chr7_1:7065953-7065972 Msa1007520:CDS 30.0%
!! AACCATTTTTGTGGATCATT+AGG - chr7_1:7065962-7065981 Msa1007520:CDS 30.0%
ATTGGTTGATCACCAAAAAA+TGG + chr7_1:7066183-7066202 None:intergenic 30.0%
TTGATTCCATATCCTCTTCA+AGG - chr7_1:7064573-7064592 Msa1007520:CDS 35.0%
TGATTCCATATCCTCTTCAA+GGG - chr7_1:7064574-7064593 Msa1007520:CDS 35.0%
!!! AGTTTTGCTAGTTTTAGCAG+TGG + chr7_1:7064609-7064628 None:intergenic 35.0%
AACCGTTTGCTTAAATCAAG+AGG - chr7_1:7064681-7064700 Msa1007520:CDS 35.0%
! AGAGGTTCTAATTCTCTTGA+TGG - chr7_1:7064699-7064718 Msa1007520:CDS 35.0%
AAGAACTTCATCAAACCCTT+CGG - chr7_1:7064825-7064844 Msa1007520:CDS 35.0%
TCAGAAACTAAGCAAGTAAC+CGG + chr7_1:7064900-7064919 None:intergenic 35.0%
TCAGCAACTTGTATGGTAAA+TGG + chr7_1:7064933-7064952 None:intergenic 35.0%
ATTCTCTTCAGCAACTTGTA+TGG + chr7_1:7064940-7064959 None:intergenic 35.0%
TTGGTGAAAAGAGAAGGATT+GGG + chr7_1:7064968-7064987 None:intergenic 35.0%
AAGAAGTTACATGCACTAGT+TGG + chr7_1:7064987-7065006 None:intergenic 35.0%
TGTCAAACATTGTACGAAAG+TGG + chr7_1:7065019-7065038 None:intergenic 35.0%
CAACTCGTCAAATTGCTATA+AGG + chr7_1:7065176-7065195 None:intergenic 35.0%
GTAATATTGAGTAGAGTCAC+CGG + chr7_1:7065269-7065288 None:intergenic 35.0%
TGAGTCTCGTCAAATTATGT+GGG + chr7_1:7065410-7065429 None:intergenic 35.0%
ATGAGTCTCGTCAAATTATG+TGG + chr7_1:7065411-7065430 None:intergenic 35.0%
!! AAAGAAGTCAATAGCTTGCT+AGG + chr7_1:7065483-7065502 None:intergenic 35.0%
AATCGAAAGTTCTGTAATCC+TGG + chr7_1:7065559-7065578 None:intergenic 35.0%
AGTGTTAAAGATGATAGCAG+AGG + chr7_1:7065671-7065690 None:intergenic 35.0%
GGTCCAATGGTATATAATGA+AGG + chr7_1:7065742-7065761 None:intergenic 35.0%
TAATGAAGGTAAAGGTCCAA+TGG + chr7_1:7065755-7065774 None:intergenic 35.0%
AAAGATGCCAAGTTACTATG+TGG + chr7_1:7065790-7065809 None:intergenic 35.0%
CATAGTAACTTGGCATCTTT+AGG - chr7_1:7065790-7065809 Msa1007520:intron 35.0%
GACCTAATGATCCACAAAAA+TGG + chr7_1:7065967-7065986 None:intergenic 35.0%
ATTAGGTCTGATCTTGTCAT+TGG - chr7_1:7065979-7065998 Msa1007520:CDS 35.0%
GAGAAAGAAATTTCAGACAG+AGG - chr7_1:7066030-7066049 Msa1007520:CDS 35.0%
TCAAGAATCCACCAATTGAA+GGG + chr7_1:7066098-7066117 None:intergenic 35.0%
AAAAATGGCCAACACAACAT+CGG + chr7_1:7066168-7066187 None:intergenic 35.0%
!!! ATGTTGTGTTGGCCATTTTT+TGG - chr7_1:7066168-7066187 Msa1007520:CDS 35.0%
ATCTGCAATATATGGGAGAT+TGG - chr7_1:7066216-7066235 Msa1007520:CDS 35.0%
GAAGCTGATCAATGAATTGA+TGG - chr7_1:7066278-7066297 Msa1007520:CDS 35.0%
! CTGATCAATGAATTGATGGT+AGG - chr7_1:7066282-7066301 Msa1007520:CDS 35.0%
! GAATTGATGGTAGGAGATAA+AGG - chr7_1:7066291-7066310 Msa1007520:CDS 35.0%
GAGATAAAGGAAAGAAGATG+AGG - chr7_1:7066304-7066323 Msa1007520:CDS 35.0%
TGCTTTCTTCCTTAACTCTA+CGG + chr7_1:7066337-7066356 None:intergenic 35.0%
TGGTTGTTCATACATGAACT+TGG - chr7_1:7066377-7066396 Msa1007520:CDS 35.0%
TTCATACATGAACTTGGACA+AGG - chr7_1:7066383-7066402 Msa1007520:CDS 35.0%
CTTGGACAAGGTTATTAAGA+AGG - chr7_1:7066395-7066414 Msa1007520:CDS 35.0%
TTGATTCCATATCCTCTTCA+AGG - chr7_1:7064573-7064592 Msa1007520:CDS 35.0%
TGATTCCATATCCTCTTCAA+GGG - chr7_1:7064574-7064593 Msa1007520:CDS 35.0%
!!! AGTTTTGCTAGTTTTAGCAG+TGG + chr7_1:7064609-7064628 None:intergenic 35.0%
AACCGTTTGCTTAAATCAAG+AGG - chr7_1:7064681-7064700 Msa1007520:CDS 35.0%
! AGAGGTTCTAATTCTCTTGA+TGG - chr7_1:7064699-7064718 Msa1007520:CDS 35.0%
AAGAACTTCATCAAACCCTT+CGG - chr7_1:7064825-7064844 Msa1007520:CDS 35.0%
TCAGAAACTAAGCAAGTAAC+CGG + chr7_1:7064900-7064919 None:intergenic 35.0%
TCAGCAACTTGTATGGTAAA+TGG + chr7_1:7064933-7064952 None:intergenic 35.0%
ATTCTCTTCAGCAACTTGTA+TGG + chr7_1:7064940-7064959 None:intergenic 35.0%
TTGGTGAAAAGAGAAGGATT+GGG + chr7_1:7064968-7064987 None:intergenic 35.0%
AAGAAGTTACATGCACTAGT+TGG + chr7_1:7064987-7065006 None:intergenic 35.0%
TGTCAAACATTGTACGAAAG+TGG + chr7_1:7065019-7065038 None:intergenic 35.0%
CAACTCGTCAAATTGCTATA+AGG + chr7_1:7065176-7065195 None:intergenic 35.0%
GTAATATTGAGTAGAGTCAC+CGG + chr7_1:7065269-7065288 None:intergenic 35.0%
TGAGTCTCGTCAAATTATGT+GGG + chr7_1:7065410-7065429 None:intergenic 35.0%
ATGAGTCTCGTCAAATTATG+TGG + chr7_1:7065411-7065430 None:intergenic 35.0%
!! AAAGAAGTCAATAGCTTGCT+AGG + chr7_1:7065483-7065502 None:intergenic 35.0%
AATCGAAAGTTCTGTAATCC+TGG + chr7_1:7065559-7065578 None:intergenic 35.0%
AGTGTTAAAGATGATAGCAG+AGG + chr7_1:7065671-7065690 None:intergenic 35.0%
GGTCCAATGGTATATAATGA+AGG + chr7_1:7065742-7065761 None:intergenic 35.0%
TAATGAAGGTAAAGGTCCAA+TGG + chr7_1:7065755-7065774 None:intergenic 35.0%
AAAGATGCCAAGTTACTATG+TGG + chr7_1:7065790-7065809 None:intergenic 35.0%
CATAGTAACTTGGCATCTTT+AGG - chr7_1:7065790-7065809 Msa1007520:intron 35.0%
GACCTAATGATCCACAAAAA+TGG + chr7_1:7065967-7065986 None:intergenic 35.0%
ATTAGGTCTGATCTTGTCAT+TGG - chr7_1:7065979-7065998 Msa1007520:CDS 35.0%
GAGAAAGAAATTTCAGACAG+AGG - chr7_1:7066030-7066049 Msa1007520:CDS 35.0%
TCAAGAATCCACCAATTGAA+GGG + chr7_1:7066098-7066117 None:intergenic 35.0%
AAAAATGGCCAACACAACAT+CGG + chr7_1:7066168-7066187 None:intergenic 35.0%
!!! ATGTTGTGTTGGCCATTTTT+TGG - chr7_1:7066168-7066187 Msa1007520:CDS 35.0%
ATCTGCAATATATGGGAGAT+TGG - chr7_1:7066216-7066235 Msa1007520:CDS 35.0%
GAAGCTGATCAATGAATTGA+TGG - chr7_1:7066278-7066297 Msa1007520:CDS 35.0%
! CTGATCAATGAATTGATGGT+AGG - chr7_1:7066282-7066301 Msa1007520:CDS 35.0%
! GAATTGATGGTAGGAGATAA+AGG - chr7_1:7066291-7066310 Msa1007520:CDS 35.0%
GAGATAAAGGAAAGAAGATG+AGG - chr7_1:7066304-7066323 Msa1007520:CDS 35.0%
TGCTTTCTTCCTTAACTCTA+CGG + chr7_1:7066337-7066356 None:intergenic 35.0%
TGGTTGTTCATACATGAACT+TGG - chr7_1:7066377-7066396 Msa1007520:CDS 35.0%
TTCATACATGAACTTGGACA+AGG - chr7_1:7066383-7066402 Msa1007520:CDS 35.0%
CTTGGACAAGGTTATTAAGA+AGG - chr7_1:7066395-7066414 Msa1007520:CDS 35.0%
TATGGAATCAACACAGCATG+TGG + chr7_1:7064564-7064583 None:intergenic 40.0%
ATATGCCCTTGAAGAGGATA+TGG + chr7_1:7064582-7064601 None:intergenic 40.0%
GGATTTATATGCCCTTGAAG+AGG + chr7_1:7064588-7064607 None:intergenic 40.0%
CTAACTCCAATGGAAGGTAA+TGG - chr7_1:7064759-7064778 Msa1007520:CDS 40.0%
ACATCACCATTACCTTCCAT+TGG + chr7_1:7064768-7064787 None:intergenic 40.0%
! GTTGGTGAAAAGAGAAGGAT+TGG + chr7_1:7064969-7064988 None:intergenic 40.0%
!! CACTAGTTGGTGAAAAGAGA+AGG + chr7_1:7064974-7064993 None:intergenic 40.0%
AAAGGTCTAATACCGCTCAA+AGG - chr7_1:7065038-7065057 Msa1007520:CDS 40.0%
CGCAAATGATTACCTTTGAG+CGG + chr7_1:7065053-7065072 None:intergenic 40.0%
TCCTGGAATACAGTCTACTT+TGG + chr7_1:7065542-7065561 None:intergenic 40.0%
AGGATCTACCTGACGTAATA+AGG - chr7_1:7065581-7065600 Msa1007520:intron 40.0%
GGATCTACCTGACGTAATAA+GGG - chr7_1:7065582-7065601 Msa1007520:intron 40.0%
AAGATACCAAGTGCCTTGAA+TGG - chr7_1:7065830-7065849 Msa1007520:intron 40.0%
CCTTTGATTCAAGCCATTCA+AGG + chr7_1:7065846-7065865 None:intergenic 40.0%
CCTTGAATGGCTTGAATCAA+AGG - chr7_1:7065843-7065862 Msa1007520:intron 40.0%
! AGCAACTATTGGAGTTTGCT+TGG - chr7_1:7065920-7065939 Msa1007520:CDS 40.0%
! GCAACTATTGGAGTTTGCTT+GGG - chr7_1:7065921-7065940 Msa1007520:CDS 40.0%
! CAACTATTGGAGTTTGCTTG+GGG - chr7_1:7065922-7065941 Msa1007520:CDS 40.0%
TGGTTCAATACTTGCTCTTG+CGG + chr7_1:7066075-7066094 None:intergenic 40.0%
GTATTGAACCACCCTTCAAT+TGG - chr7_1:7066084-7066103 Msa1007520:CDS 40.0%
GTCAAGAATCCACCAATTGA+AGG + chr7_1:7066099-7066118 None:intergenic 40.0%
GATTCTTGACTCATTGTGGA+TGG - chr7_1:7066109-7066128 Msa1007520:CDS 40.0%
CGATACTAATGTGAAGAGAG+AGG - chr7_1:7066248-7066267 Msa1007520:CDS 40.0%
TACTAATGTGAAGAGAGAGG+AGG - chr7_1:7066251-7066270 Msa1007520:CDS 40.0%
TATGGAATCAACACAGCATG+TGG + chr7_1:7064564-7064583 None:intergenic 40.0%
ATATGCCCTTGAAGAGGATA+TGG + chr7_1:7064582-7064601 None:intergenic 40.0%
GGATTTATATGCCCTTGAAG+AGG + chr7_1:7064588-7064607 None:intergenic 40.0%
CTAACTCCAATGGAAGGTAA+TGG - chr7_1:7064759-7064778 Msa1007520:CDS 40.0%
ACATCACCATTACCTTCCAT+TGG + chr7_1:7064768-7064787 None:intergenic 40.0%
! GTTGGTGAAAAGAGAAGGAT+TGG + chr7_1:7064969-7064988 None:intergenic 40.0%
!! CACTAGTTGGTGAAAAGAGA+AGG + chr7_1:7064974-7064993 None:intergenic 40.0%
AAAGGTCTAATACCGCTCAA+AGG - chr7_1:7065038-7065057 Msa1007520:CDS 40.0%
CGCAAATGATTACCTTTGAG+CGG + chr7_1:7065053-7065072 None:intergenic 40.0%
TCCTGGAATACAGTCTACTT+TGG + chr7_1:7065542-7065561 None:intergenic 40.0%
AGGATCTACCTGACGTAATA+AGG - chr7_1:7065581-7065600 Msa1007520:intron 40.0%
GGATCTACCTGACGTAATAA+GGG - chr7_1:7065582-7065601 Msa1007520:intron 40.0%
AAGATACCAAGTGCCTTGAA+TGG - chr7_1:7065830-7065849 Msa1007520:intron 40.0%
CCTTTGATTCAAGCCATTCA+AGG + chr7_1:7065846-7065865 None:intergenic 40.0%
CCTTGAATGGCTTGAATCAA+AGG - chr7_1:7065843-7065862 Msa1007520:intron 40.0%
! AGCAACTATTGGAGTTTGCT+TGG - chr7_1:7065920-7065939 Msa1007520:CDS 40.0%
! GCAACTATTGGAGTTTGCTT+GGG - chr7_1:7065921-7065940 Msa1007520:CDS 40.0%
! CAACTATTGGAGTTTGCTTG+GGG - chr7_1:7065922-7065941 Msa1007520:CDS 40.0%
TGGTTCAATACTTGCTCTTG+CGG + chr7_1:7066075-7066094 None:intergenic 40.0%
GTATTGAACCACCCTTCAAT+TGG - chr7_1:7066084-7066103 Msa1007520:CDS 40.0%
GTCAAGAATCCACCAATTGA+AGG + chr7_1:7066099-7066118 None:intergenic 40.0%
GATTCTTGACTCATTGTGGA+TGG - chr7_1:7066109-7066128 Msa1007520:CDS 40.0%
CGATACTAATGTGAAGAGAG+AGG - chr7_1:7066248-7066267 Msa1007520:CDS 40.0%
TACTAATGTGAAGAGAGAGG+AGG - chr7_1:7066251-7066270 Msa1007520:CDS 40.0%
!! GTCTTTGAGACCATCCAAGA+TGG - chr7_1:7064735-7064754 Msa1007520:CDS 45.0%
TGGAGTTAGACCATCTTGGA+TGG + chr7_1:7064748-7064767 None:intergenic 45.0%
CCATTGGAGTTAGACCATCT+TGG + chr7_1:7064752-7064771 None:intergenic 45.0%
CCAAGATGGTCTAACTCCAA+TGG - chr7_1:7064749-7064768 Msa1007520:CDS 45.0%
GATGGTCTAACTCCAATGGA+AGG - chr7_1:7064753-7064772 Msa1007520:CDS 45.0%
CTAGCAAGAAGTTCACCGAA+GGG + chr7_1:7064843-7064862 None:intergenic 45.0%
TCTAGCAAGAAGTTCACCGA+AGG + chr7_1:7064844-7064863 None:intergenic 45.0%
GAAACTAAGCAAGTAACCGG+TGG + chr7_1:7064897-7064916 None:intergenic 45.0%
GCCAAAGTAGACTGTATTCC+AGG - chr7_1:7065538-7065557 Msa1007520:intron 45.0%
TCTGCAACCCTTATTACGTC+AGG + chr7_1:7065592-7065611 None:intergenic 45.0%
! TTCAAGCCATTCAAGGCACT+TGG + chr7_1:7065839-7065858 None:intergenic 45.0%
!! TAGTTGCTCTGGAGTCATGA+CGG + chr7_1:7065908-7065927 None:intergenic 45.0%
CATGACTCCAGAGCAACTAT+TGG - chr7_1:7065909-7065928 Msa1007520:intron 45.0%
GCAAACTCCAATAGTTGCTC+TGG + chr7_1:7065919-7065938 None:intergenic 45.0%
! ATTGGAGTTTGCTTGGGGTT+TGG - chr7_1:7065927-7065946 Msa1007520:CDS 45.0%
AGGTCTGATCTTGTCATTGG+CGG - chr7_1:7065982-7066001 Msa1007520:CDS 45.0%
TTGAACCACCCTTCAATTGG+TGG - chr7_1:7066087-7066106 Msa1007520:CDS 45.0%
AGAATCCACCAATTGAAGGG+TGG + chr7_1:7066095-7066114 None:intergenic 45.0%
! GGTGGATTCTTGACTCATTG+TGG - chr7_1:7066105-7066124 Msa1007520:CDS 45.0%
TCCAGCAAGTACGCTTTCAA+CGG + chr7_1:7066142-7066161 None:intergenic 45.0%
GGCAAAATGCCGTAGAGTTA+AGG - chr7_1:7066325-7066344 Msa1007520:CDS 45.0%
GCAGAAGAGAACACCAGTAT+CGG - chr7_1:7066354-7066373 Msa1007520:CDS 45.0%
GTATGAACAACCACCGATAC+TGG + chr7_1:7066370-7066389 None:intergenic 45.0%
!! GTCTTTGAGACCATCCAAGA+TGG - chr7_1:7064735-7064754 Msa1007520:CDS 45.0%
TGGAGTTAGACCATCTTGGA+TGG + chr7_1:7064748-7064767 None:intergenic 45.0%
CCATTGGAGTTAGACCATCT+TGG + chr7_1:7064752-7064771 None:intergenic 45.0%
CCAAGATGGTCTAACTCCAA+TGG - chr7_1:7064749-7064768 Msa1007520:CDS 45.0%
GATGGTCTAACTCCAATGGA+AGG - chr7_1:7064753-7064772 Msa1007520:CDS 45.0%
CTAGCAAGAAGTTCACCGAA+GGG + chr7_1:7064843-7064862 None:intergenic 45.0%
TCTAGCAAGAAGTTCACCGA+AGG + chr7_1:7064844-7064863 None:intergenic 45.0%
GAAACTAAGCAAGTAACCGG+TGG + chr7_1:7064897-7064916 None:intergenic 45.0%
GCCAAAGTAGACTGTATTCC+AGG - chr7_1:7065538-7065557 Msa1007520:intron 45.0%
TCTGCAACCCTTATTACGTC+AGG + chr7_1:7065592-7065611 None:intergenic 45.0%
! TTCAAGCCATTCAAGGCACT+TGG + chr7_1:7065839-7065858 None:intergenic 45.0%
!! TAGTTGCTCTGGAGTCATGA+CGG + chr7_1:7065908-7065927 None:intergenic 45.0%
CATGACTCCAGAGCAACTAT+TGG - chr7_1:7065909-7065928 Msa1007520:intron 45.0%
GCAAACTCCAATAGTTGCTC+TGG + chr7_1:7065919-7065938 None:intergenic 45.0%
! ATTGGAGTTTGCTTGGGGTT+TGG - chr7_1:7065927-7065946 Msa1007520:CDS 45.0%
AGGTCTGATCTTGTCATTGG+CGG - chr7_1:7065982-7066001 Msa1007520:CDS 45.0%
TTGAACCACCCTTCAATTGG+TGG - chr7_1:7066087-7066106 Msa1007520:CDS 45.0%
AGAATCCACCAATTGAAGGG+TGG + chr7_1:7066095-7066114 None:intergenic 45.0%
! GGTGGATTCTTGACTCATTG+TGG - chr7_1:7066105-7066124 Msa1007520:CDS 45.0%
TCCAGCAAGTACGCTTTCAA+CGG + chr7_1:7066142-7066161 None:intergenic 45.0%
GGCAAAATGCCGTAGAGTTA+AGG - chr7_1:7066325-7066344 Msa1007520:CDS 45.0%
GCAGAAGAGAACACCAGTAT+CGG - chr7_1:7066354-7066373 Msa1007520:CDS 45.0%
GTATGAACAACCACCGATAC+TGG + chr7_1:7066370-7066389 None:intergenic 45.0%
AGACTTCATGACTCTGCCGA+TGG - chr7_1:7064861-7064880 Msa1007520:CDS 50.0%
CGGTGGAATAAGACCACCAT+CGG + chr7_1:7064880-7064899 None:intergenic 50.0%
!! CGATGGTGGTCTTATTCCAC+CGG - chr7_1:7064878-7064897 Msa1007520:CDS 50.0%
ACAGAGGTCTAATCGCAAGC+TGG - chr7_1:7066046-7066065 Msa1007520:CDS 50.0%
! ACCGTTGAAAGCGTACTTGC+TGG - chr7_1:7066138-7066157 Msa1007520:CDS 50.0%
! GAAGAGAACACCAGTATCGG+TGG - chr7_1:7066357-7066376 Msa1007520:CDS 50.0%
AGACTTCATGACTCTGCCGA+TGG - chr7_1:7064861-7064880 Msa1007520:CDS 50.0%
CGGTGGAATAAGACCACCAT+CGG + chr7_1:7064880-7064899 None:intergenic 50.0%
!! CGATGGTGGTCTTATTCCAC+CGG - chr7_1:7064878-7064897 Msa1007520:CDS 50.0%
ACAGAGGTCTAATCGCAAGC+TGG - chr7_1:7066046-7066065 Msa1007520:CDS 50.0%
! ACCGTTGAAAGCGTACTTGC+TGG - chr7_1:7066138-7066157 Msa1007520:CDS 50.0%
! GAAGAGAACACCAGTATCGG+TGG - chr7_1:7066357-7066376 Msa1007520:CDS 50.0%
CTTCATGACTCTGCCGATGG+TGG - chr7_1:7064864-7064883 Msa1007520:CDS 55.0%
!! CTGGAGTGCCGATGTTGTGT+TGG - chr7_1:7066157-7066176 Msa1007520:CDS 55.0%
CTTCATGACTCTGCCGATGG+TGG - chr7_1:7064864-7064883 Msa1007520:CDS 55.0%
!! CTGGAGTGCCGATGTTGTGT+TGG - chr7_1:7066157-7066176 Msa1007520:CDS 55.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 7064537 7066437 7064537 ID=Msa1007520;Name=Msa1007520
chr7_1 mRNA 7064537 7066437 7064537 ID=Msa1007520-mRNA-1;Parent=Msa1007520;Name=Msa1007520-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|466
chr7_1 exon 7065915 7066437 7065915 ID=Msa1007520-mRNA-1:exon:2142;Parent=Msa1007520-mRNA-1
chr7_1 exon 7064537 7065414 7064537 ID=Msa1007520-mRNA-1:exon:2141;Parent=Msa1007520-mRNA-1
chr7_1 CDS 7065915 7066437 7065915 ID=Msa1007520-mRNA-1:cds;Parent=Msa1007520-mRNA-1
chr7_1 CDS 7064537 7065414 7064537 ID=Msa1007520-mRNA-1:cds;Parent=Msa1007520-mRNA-1
Gene Sequence

>Msa1007520

ATGAGTTACATTGTTAATAAAAAACCACATGCTGTGTTGATTCCATATCCTCTTCAAGGGCATATAAATCCACTGCTAAAACTAGCAAAACTTCTTCATATTAAAGGCTTTCACATAACCTTTGTCAATACAGAATACAATCACAACCGTTTGCTTAAATCAAGAGGTTCTAATTCTCTTGATGGTTTCACTGATTTTGTCTTTGAGACCATCCAAGATGGTCTAACTCCAATGGAAGGTAATGGTGATGTTAGTCAAGACTTGACATCTCTTTCTCAATCAGTTAGTAAGAACTTCATCAAACCCTTCGGTGAACTTCTTGCTAGACTTCATGACTCTGCCGATGGTGGTCTTATTCCACCGGTTACTTGCTTAGTTTCTGATTGTTACATGCCATTTACCATACAAGTTGCTGAAGAGAATGCACTCCCAATCCTTCTCTTTTCACCAACTAGTGCATGTAACTTCTTAACTACTTTCCACTTTCGTACAATGTTTGACAAAGGTCTAATACCGCTCAAAGGATTACAGAACTTTCGATTGAAGGATCTACCTGACGTAATAAGGGTTGCAGATCGTAAAGATCCCATTTTAGAATTGGTCATTGAAGTGGGAGATAGCTTTCACAAAGCCTCTGCTATCATCTTTAACACTTATGATGAACTCGAGAGTGATGTAATGAATGCACTATATTATGTGTTCCCTTCATTATATACCATTGGACCTTTACCTTCATTACTAAATCAAAATCCACATAGTAACTTGGCATCTTTAGGTTCAAATCTTTGGAAAGAAGATACCAAGTGCCTTGAATGGCTTGAATCAAAGGAACTTGAGTCTGTTGTTTATGTGAGTTTTGGCAGCATTACCGTCATGACTCCAGAGCAACTATTGGAGTTTGCTTGGGGTTTGGCGAATAGCAAGAAACCATTTTTGTGGATCATTAGGTCTGATCTTGTCATTGGCGGTTCCTTTATTATGTCATCTGAGTTTGAGAAAGAAATTTCAGACAGAGGTCTAATCGCAAGCTGGTGTCCGCAAGAGCAAGTATTGAACCACCCTTCAATTGGTGGATTCTTGACTCATTGTGGATGGAACTCAACCGTTGAAAGCGTACTTGCTGGAGTGCCGATGTTGTGTTGGCCATTTTTTGGTGATCAACCAATAAACTGTAGATATATCTGCAATATATGGGAGATTGGAATCGAAATCGATACTAATGTGAAGAGAGAGGAGGTCGAGAAGCTGATCAATGAATTGATGGTAGGAGATAAAGGAAAGAAGATGAGGCAAAATGCCGTAGAGTTAAGGAAGAAAGCAGAAGAGAACACCAGTATCGGTGGTTGTTCATACATGAACTTGGACAAGGTTATTAAGAAGGTCTTGCTTAAAAAATATTAG

Protein sequence

>Msa1007520

MSYIVNKKPHAVLIPYPLQGHINPLLKLAKLLHIKGFHITFVNTEYNHNRLLKSRGSNSLDGFTDFVFETIQDGLTPMEGNGDVSQDLTSLSQSVSKNFIKPFGELLARLHDSADGGLIPPVTCLVSDCYMPFTIQVAEENALPILLFSPTSACNFLTTFHFRTMFDKGLIPLKGLQNFRLKDLPDVIRVADRKDPILELVIEVGDSFHKASAIIFNTYDELESDVMNALYYVFPSLYTIGPLPSLLNQNPHSNLASLGSNLWKEDTKCLEWLESKELESVVYVSFGSITVMTPEQLLEFAWGLANSKKPFLWIIRSDLVIGGSFIMSSEFEKEISDRGLIASWCPQEQVLNHPSIGGFLTHCGWNSTVESVLAGVPMLCWPFFGDQPINCRYICNIWEIGIEIDTNVKREEVEKLINELMVGDKGKKMRQNAVELRKKAEENTSIGGCSYMNLDKVIKKVLLKKY*