AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1099940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1099940 MtrunA17_Chr7g0217881 87.124 466 25 1 1 431 1 466 0.0 798
Msa1099940 MtrunA17_Chr6g0453951 68.660 485 98 3 1 431 47 531 0.0 687
Msa1099940 MtrunA17_Chr6g0454401 70.600 483 88 3 1 429 1 483 0.0 684
Msa1099940 MtrunA17_Chr6g0454361 69.182 477 94 2 8 431 9 485 0.0 659
Msa1099940 MtrunA17_Chr6g0454191 66.874 483 106 3 1 429 1 483 0.0 655
Msa1099940 MtrunA17_Chr6g0453961 65.567 485 113 2 1 431 10 494 0.0 650
Msa1099940 MtrunA17_Chr6g0454181 65.353 482 114 2 1 429 1 482 0.0 649
Msa1099940 MtrunA17_Chr6g0454331 65.553 479 110 3 6 429 3 481 0.0 644
Msa1099940 MtrunA17_Chr6g0454351 65.638 486 95 4 1 431 1 469 0.0 635
Msa1099940 MtrunA17_Chr6g0452771 67.355 484 105 2 1 431 1 484 0.0 632
Msa1099940 MtrunA17_Chr6g0454211 65.696 481 112 2 2 429 289 769 0.0 630
Msa1099940 MtrunA17_Chr6g0454211 42.407 349 66 5 131 426 1 267 9.02e-72 240
Msa1099940 MtrunA17_Chr6g0454291 66.876 477 105 2 6 429 3 479 0.0 629
Msa1099940 MtrunA17_Chr6g0454261 65.145 482 115 2 1 429 1 482 0.0 628
Msa1099940 MtrunA17_Chr3g0078841 63.975 483 117 3 1 429 1 480 0.0 625
Msa1099940 MtrunA17_Chr6g0454341 63.561 483 119 3 1 429 1 480 0.0 622
Msa1099940 MtrunA17_Chr8g0359821 64.730 482 115 3 1 429 1 480 0.0 622
Msa1099940 MtrunA17_Chr6g0454301 64.389 483 115 3 1 429 254 733 0.0 621
Msa1099940 MtrunA17_Chr6g0454301 79.602 201 41 0 225 425 28 228 1.33e-111 344
Msa1099940 MtrunA17_Chr8g0336331 63.354 483 119 4 1 429 1 479 0.0 619
Msa1099940 MtrunA17_Chr6g0454141 64.315 482 119 2 1 429 1 482 0.0 618
Msa1099940 MtrunA17_Chr6g0454201 67.579 475 101 2 8 429 9 483 0.0 615
Msa1099940 MtrunA17_Chr6g0454121 65.145 482 114 3 1 429 1 481 0.0 605
Msa1099940 MtrunA17_Chr6g0454321 62.316 475 122 3 1 421 1 472 0.0 602
Msa1099940 MtrunA17_Chr6g0454321 69.600 125 38 0 2 126 496 620 8.68e-52 184
Msa1099940 MtrunA17_Chr6g0454151 63.918 485 118 4 1 431 1 482 0.0 596
Msa1099940 MtrunA17_Chr5g0423981 63.519 466 118 4 1 431 1 449 0.0 596
Msa1099940 MtrunA17_Chr6g0454131 62.241 482 128 3 1 429 1 481 0.0 580
Msa1099940 MtrunA17_Chr6g0454251 61.069 393 100 2 6 345 3 395 2.40e-173 490
Msa1099940 MtrunA17_Chr3g0092641 49.580 476 177 8 9 428 11 479 5.97e-159 457
Msa1099940 MtrunA17_Chr5g0426431 49.585 482 180 8 4 429 6 480 7.70e-157 452
Msa1099940 MtrunA17_Chr8g0355011 61.453 358 108 5 92 429 17 364 2.22e-153 439
Msa1099940 MtrunA17_Chr2g0278711 47.390 479 187 6 7 428 8 478 1.52e-150 436
Msa1099940 MtrunA17_Chr3g0118711 43.424 479 210 5 5 427 8 481 2.60e-142 415
Msa1099940 MtrunA17_Chr3g0118671 42.589 479 214 5 5 427 1 474 1.04e-141 413
Msa1099940 MtrunA17_Chr3g0118771 43.305 478 210 5 6 427 17 489 5.10e-141 412
Msa1099940 MtrunA17_Chr3g0118691 42.589 479 214 5 5 427 10 483 1.07e-140 411
Msa1099940 MtrunA17_Chr3g0118701 41.962 479 217 5 5 427 10 483 4.04e-139 407
Msa1099940 MtrunA17_Chr4g0050341 44.093 474 204 5 8 423 17 487 2.02e-135 398
Msa1099940 MtrunA17_Chr6g0454271 64.706 289 67 1 176 429 1 289 7.11e-135 389
Msa1099940 MtrunA17_Chr3g0118751 41.004 478 194 7 5 427 1 445 1.95e-125 370
Msa1099940 MtrunA17_Chr6g0454171 55.588 340 86 3 131 431 1 314 3.71e-124 362
Msa1099940 MtrunA17_Chr6g0454221 84.080 201 32 0 225 425 29 229 9.39e-124 361
Msa1099940 MtrunA17_Chr3g0118661 40.461 477 222 6 6 426 9 479 5.26e-117 350
Msa1099940 MtrunA17_Chr6g0454371 80.925 173 33 0 257 429 1 173 7.33e-101 298
Msa1099940 MtrunA17_Chr5g0426401 48.397 312 118 5 155 428 6 312 8.41e-96 290
Msa1099940 MtrunA17_Chr3g0112771 36.266 466 234 8 5 427 7 452 7.10e-95 293
Msa1099940 MtrunA17_Chr8g0336271 57.438 242 81 3 1 224 1 238 6.71e-92 279
Msa1099940 MtrunA17_Chr3g0118721 46.552 290 117 2 176 427 1 290 9.35e-91 276
Msa1099940 MtrunA17_Chr6g0454231 59.583 240 76 2 1 222 241 477 3.73e-90 281
Msa1099940 MtrunA17_Chr6g0454231 55.686 255 39 4 209 427 3 219 3.57e-80 255
Msa1099940 MtrunA17_Chr6g0454281 70.115 174 52 0 1 174 1 174 9.64e-87 263
Msa1099940 MtrunA17_Chr6g0453981 59.740 231 40 2 131 308 1 231 1.15e-84 258
Msa1099940 MtrunA17_Chr6g0453941 48.214 336 76 10 1 299 1 275 3.80e-82 254
Msa1099940 MtrunA17_Chr5g0412131 33.192 473 247 10 9 426 11 469 1.33e-80 256
Msa1099940 MtrunA17_Chr5g0412111 32.842 475 245 10 9 426 4 461 6.39e-80 254
Msa1099940 MtrunA17_Chr8g0336261 78.832 137 29 0 257 393 1 137 5.04e-79 241
Msa1099940 MtrunA17_Chr3g0112761 32.251 462 246 9 12 427 10 450 5.90e-79 251
Msa1099940 MtrunA17_Chr5g0412101 32.278 474 251 11 9 426 11 470 4.46e-75 242
Msa1099940 MtrunA17_Chr4g0032331 32.391 460 248 11 12 427 10 450 1.14e-72 235
Msa1099940 MtrunA17_Chr7g0218831 30.444 450 260 9 9 423 5 436 1.52e-69 226
Msa1099940 MtrunA17_Chr7g0218841 31.929 451 253 12 9 423 5 437 2.23e-66 218
Msa1099940 MtrunA17_Chr3g0098111 29.211 469 272 8 10 426 9 469 3.69e-66 219
Msa1099940 MtrunA17_Chr1g0207981 29.114 474 269 10 10 428 13 474 4.98e-66 218
Msa1099940 MtrunA17_Chr7g0218811 30.667 450 260 9 9 423 14 446 5.53e-66 218
Msa1099940 MtrunA17_Chr6g0464881 28.481 474 270 10 4 429 5 457 2.03e-64 214
Msa1099940 MtrunA17_Chr1g0207931 31.178 433 255 12 10 426 92 497 4.26e-64 214
Msa1099940 MtrunA17_Chr7g0218791 29.783 460 256 11 9 423 4 441 1.06e-63 211
Msa1099940 MtrunA17_Chr7g0218821 29.736 454 262 11 9 419 4 443 2.34e-63 211
Msa1099940 MtrunA17_Chr4g0053501 28.694 467 272 9 12 429 13 467 1.46e-62 210
Msa1099940 MtrunA17_Chr8g0365811 30.316 475 257 14 12 426 497 957 2.53e-62 217
Msa1099940 MtrunA17_Chr8g0365811 29.399 449 247 12 12 400 11 449 2.37e-54 194
Msa1099940 MtrunA17_Chr5g0414331 29.158 463 262 11 6 423 9 450 7.94e-61 204
Msa1099940 MtrunA17_Chr6g0464921 29.336 467 264 11 9 428 10 457 8.86e-61 204
Msa1099940 MtrunA17_Chr8g0380531 30.022 463 263 10 10 426 10 457 9.19e-61 204
Msa1099940 MtrunA17_Chr1g0207831 29.536 474 255 10 12 426 10 463 1.93e-60 204
Msa1099940 MtrunA17_Chr4g0053321 29.167 480 271 13 4 429 18 482 2.10e-60 204
Msa1099940 MtrunA17_Chr1g0207951 30.480 479 254 14 6 426 651 1108 2.21e-60 212
Msa1099940 MtrunA17_Chr1g0207951 29.387 473 261 11 6 426 119 570 2.09e-57 204
Msa1099940 MtrunA17_Chr1g0161351 29.325 474 265 12 10 426 37 497 7.31e-60 203
Msa1099940 MtrunA17_Chr1g0207971 28.387 465 266 10 10 426 8 453 8.45e-60 201
Msa1099940 MtrunA17_Chr1g0207861 30.625 480 251 13 10 426 8 468 1.65e-59 201
Msa1099940 MtrunA17_Chr5g0414321 29.449 472 257 12 6 427 7 452 9.67e-59 199
Msa1099940 MtrunA17_Chr7g0275681 29.857 489 263 14 5 427 7 481 3.59e-58 198
Msa1099940 MtrunA17_Chr7g0250001 27.660 470 265 11 8 427 4 448 9.97e-58 196
Msa1099940 MtrunA17_Chr7g0249981 30.290 449 244 13 4 405 19 445 2.69e-57 196
Msa1099940 MtrunA17_Chr6g0464871 28.817 465 264 13 6 423 19 463 4.03e-57 195
Msa1099940 MtrunA17_Chr4g0011051 30.285 492 267 12 5 427 4 488 1.15e-56 194
Msa1099940 MtrunA17_Chr5g0393591 30.405 444 257 10 10 426 17 435 3.07e-56 192
Msa1099940 MtrunA17_Chr5g0426411 55.030 169 70 3 8 175 10 173 3.96e-56 183
Msa1099940 MtrunA17_Chr4g0044511 28.807 486 274 12 6 431 36 509 1.88e-55 191
Msa1099940 MtrunA17_Chr7g0243631 27.984 486 269 12 10 426 13 486 1.19e-54 189
Msa1099940 MtrunA17_Chr6g0464841 28.480 467 263 14 6 423 7 451 2.79e-54 187
Msa1099940 MtrunA17_Chr7g0243931 29.303 488 268 14 6 426 13 490 4.14e-54 187
Msa1099940 MtrunA17_Chr6g0464861 27.527 465 269 12 6 423 7 450 4.64e-54 186
Msa1099940 MtrunA17_Chr7g0243951 28.776 490 267 16 6 426 7 483 1.14e-53 186
Msa1099940 MtrunA17_Chr7g0265041 28.747 487 272 13 9 427 10 489 8.90e-53 184
Msa1099940 MtrunA17_Chr5g0431441 28.964 473 257 11 10 427 18 466 1.90e-52 182
Msa1099940 MtrunA17_Chr8g0377921 28.392 479 267 15 9 427 2 464 2.21e-52 182
Msa1099940 MtrunA17_Chr5g0401721 27.696 473 274 12 12 427 10 471 3.19e-52 182
Msa1099940 MtrunA17_Chr7g0265101 27.812 489 280 12 8 429 7 489 1.05e-50 178
Msa1099940 MtrunA17_Chr1g0173121 28.913 460 269 14 12 426 16 462 2.07e-50 177
Msa1099940 MtrunA17_Chr5g0419761 27.767 497 267 16 7 427 6 486 5.84e-50 176
Msa1099940 MtrunA17_Chr7g0243681 27.743 483 269 14 10 426 11 479 6.02e-50 176
Msa1099940 MtrunA17_Chr7g0265151 26.915 483 281 12 10 427 9 484 9.47e-50 176
Msa1099940 MtrunA17_Chr7g0249931 27.922 462 268 14 4 419 34 476 2.20e-49 174
Msa1099940 MtrunA17_Chr4g0060511 27.789 493 272 16 6 426 7 487 1.83e-48 172
Msa1099940 MtrunA17_Chr7g0265141 29.388 490 262 15 10 427 9 486 5.60e-48 171
Msa1099940 MtrunA17_Chr8g0377941 29.638 469 262 15 12 427 9 462 1.02e-47 170
Msa1099940 MtrunA17_Chr3g0122001 28.601 479 268 10 10 426 486 952 1.61e-47 174
Msa1099940 MtrunA17_Chr3g0122001 29.132 484 260 12 10 426 6 473 7.09e-46 170
Msa1099940 MtrunA17_Chr7g0243861 26.939 490 277 14 6 426 10 487 2.20e-47 169
Msa1099940 MtrunA17_Chr1g0159551 28.228 457 267 15 15 426 19 459 2.22e-47 169
Msa1099940 MtrunA17_Chr7g0243771 27.572 486 267 16 10 426 6 475 4.99e-47 168
Msa1099940 MtrunA17_Chr7g0265051 27.143 490 280 14 8 429 7 487 5.73e-47 168
Msa1099940 MtrunA17_Chr7g0243871 26.763 482 278 14 6 426 5 472 1.84e-46 167
Msa1099940 MtrunA17_Chr3g0121991 28.279 488 258 15 10 426 79 545 3.29e-46 167
Msa1099940 MtrunA17_Chr7g0243801 26.380 489 277 14 6 426 3 476 6.26e-46 165
Msa1099940 MtrunA17_Chr5g0419771 26.547 501 262 16 10 427 36 513 1.08e-45 165
Msa1099940 MtrunA17_Chr5g0431361 27.176 471 260 11 10 426 12 453 2.53e-45 163
Msa1099940 MtrunA17_Chr8g0335141 29.167 480 263 17 3 422 2 464 4.91e-45 162
Msa1099940 MtrunA17_Chr7g0243761 27.484 473 258 14 10 426 11 454 6.33e-45 162
Msa1099940 MtrunA17_Chr8g0366391 27.572 486 266 14 10 426 9 477 7.60e-45 162
Msa1099940 MtrunA17_Chr5g0448551 25.641 429 264 7 7 394 4 418 1.65e-44 160
Msa1099940 MtrunA17_Chr6g0462531 26.866 469 275 11 12 424 6 462 2.17e-44 160
Msa1099940 MtrunA17_Chr4g0014061 27.917 480 255 14 13 423 12 469 3.80e-44 160
Msa1099940 MtrunA17_Chr7g0232391 26.186 485 269 13 7 425 3 464 4.22e-44 160
Msa1099940 MtrunA17_Chr7g0235051 28.099 484 238 17 10 425 11 452 4.27e-44 160
Msa1099940 MtrunA17_Chr4g0072761 28.698 453 272 11 10 426 15 452 6.18e-44 159
Msa1099940 MtrunA17_Chr8g0373301 30.149 335 178 10 121 402 111 442 6.75e-44 159
Msa1099940 MtrunA17_Chr7g0232401 26.305 479 262 13 7 417 3 458 1.45e-43 159
Msa1099940 MtrunA17_Chr6g0462571 27.844 334 192 6 136 422 126 457 1.83e-43 158
Msa1099940 MtrunA17_Chr8g0382021 28.205 468 262 15 15 426 39 488 1.86e-43 159
Msa1099940 MtrunA17_Chr6g0462521 29.141 326 193 6 136 424 124 448 2.06e-43 158
Msa1099940 MtrunA17_Chr1g0179901 25.662 491 280 17 10 427 16 494 2.77e-43 158
Msa1099940 MtrunA17_Chr7g0243781 25.773 485 274 13 10 426 9 475 2.80e-43 158
Msa1099940 MtrunA17_Chr4g0066221 26.415 477 278 14 13 426 14 480 4.38e-43 157
Msa1099940 MtrunA17_Chr5g0428081 26.360 478 276 12 13 426 14 479 4.97e-43 157
Msa1099940 MtrunA17_Chr7g0243851 27.021 470 260 14 6 426 7 442 5.91e-43 156
Msa1099940 MtrunA17_Chr4g0072771 26.754 456 286 10 7 426 22 465 6.02e-43 157
Msa1099940 MtrunA17_Chr4g0044501 26.749 486 267 14 10 426 10 475 7.01e-43 157
Msa1099940 MtrunA17_Chr7g0218311 26.415 477 276 11 13 426 19 483 1.04e-42 157
Msa1099940 MtrunA17_Chr6g0462541 28.144 334 190 8 136 422 129 459 1.18e-42 156
Msa1099940 MtrunA17_Chr4g0066131 26.582 474 267 11 13 423 16 471 1.35e-42 156
Msa1099940 MtrunA17_Chr6g0463851 24.590 488 275 13 13 426 14 482 1.39e-42 156
Msa1099940 MtrunA17_Chr5g0431401 26.681 476 271 13 1 426 1 448 2.67e-42 155
Msa1099940 MtrunA17_Chr5g0440421 27.273 506 277 19 1 427 1 494 3.00e-42 155
Msa1099940 MtrunA17_Chr5g0431371 28.298 470 253 14 10 426 10 448 3.78e-42 154
Msa1099940 MtrunA17_Chr6g0449931 27.027 481 258 18 8 419 4 460 5.11e-42 154
Msa1099940 MtrunA17_Chr8g0355221 26.915 483 274 15 11 426 16 486 5.40e-42 155
Msa1099940 MtrunA17_Chr7g0275511 27.331 472 257 16 9 415 14 464 5.72e-42 154
Msa1099940 MtrunA17_Chr5g0401851 27.163 497 263 17 8 426 8 483 6.91e-42 154
Msa1099940 MtrunA17_Chr2g0294931 25.732 478 281 11 13 426 14 481 9.86e-42 154
Msa1099940 MtrunA17_Chr2g0294921 27.463 477 274 13 13 426 163 630 1.77e-41 155
Msa1099940 MtrunA17_Chr8g0347281 29.268 451 249 13 9 405 17 451 1.99e-41 153
Msa1099940 MtrunA17_Chr8g0370941 27.291 502 261 16 7 424 5 486 2.32e-41 153
Msa1099940 MtrunA17_Chr8g0374931 26.096 479 278 11 13 426 14 481 2.63e-41 153
Msa1099940 MtrunA17_Chr7g0232411 26.337 486 267 15 7 425 3 464 2.68e-41 152
Msa1099940 MtrunA17_Chr7g0232311 26.737 475 277 12 5 423 1 460 3.31e-41 152
Msa1099940 MtrunA17_Chr8g0336651 28.205 468 244 14 5 405 1 443 5.02e-41 155
Msa1099940 MtrunA17_Chr8g0336651 27.530 494 258 14 7 429 778 1242 1.17e-40 155
Msa1099940 MtrunA17_Chr8g0336651 36.279 215 109 4 220 429 582 773 7.25e-34 134
Msa1099940 MtrunA17_Chr5g0427561 75.862 87 21 0 343 429 1 87 5.60e-41 140
Msa1099940 MtrunA17_Chr1g0153451 28.310 491 257 19 5 429 1 462 5.75e-41 151
Msa1099940 MtrunA17_Chr8g0347271 28.508 449 255 12 9 405 18 452 6.82e-41 151
Msa1099940 MtrunA17_Chr3g0106231 25.536 466 268 8 10 427 18 452 1.00e-40 151
Msa1099940 MtrunA17_Chr8g0339631 27.701 361 191 9 121 419 109 461 1.04e-40 151
Msa1099940 MtrunA17_Chr4g0066151 26.105 475 274 10 13 426 21 479 1.12e-40 151
Msa1099940 MtrunA17_Chr8g0336691 29.412 357 195 8 121 422 1021 1375 2.28e-40 154
Msa1099940 MtrunA17_Chr8g0336691 27.200 500 260 17 2 429 5 472 7.21e-39 149
Msa1099940 MtrunA17_Chr8g0336691 27.083 480 248 16 7 429 477 911 4.10e-35 138
Msa1099940 MtrunA17_Chr5g0431421 27.389 471 258 13 10 427 10 449 3.82e-40 149
Msa1099940 MtrunA17_Chr5g0420801 27.350 468 275 13 6 423 3 455 4.70e-40 149
Msa1099940 MtrunA17_Chr8g0336741 26.350 463 249 12 10 405 13 450 5.28e-40 149
Msa1099940 MtrunA17_Chr1g0165701 27.126 494 256 17 11 426 16 483 5.69e-40 149
Msa1099940 MtrunA17_Chr7g0249961 40.884 181 98 4 229 405 63 238 6.27e-40 144
Msa1099940 MtrunA17_Chr5g0416741 26.477 491 263 14 12 426 15 483 7.09e-40 149
Msa1099940 MtrunA17_Chr8g0335161 30.120 332 179 8 142 431 147 467 9.09e-40 148
Msa1099940 MtrunA17_Chr6g0459311 31.228 285 154 5 179 422 184 467 2.08e-39 147
Msa1099940 MtrunA17_Chr6g0462551 25.636 472 273 15 12 422 6 460 2.32e-39 147
Msa1099940 MtrunA17_Chr4g0066281 29.310 464 266 16 13 426 15 466 2.38e-39 147
Msa1099940 MtrunA17_Chr8g0339461 29.444 360 186 11 121 415 109 465 2.95e-39 147
Msa1099940 MtrunA17_Chr1g0207881 25.285 439 244 12 10 426 8 384 3.41e-39 145
Msa1099940 MtrunA17_Chr6g0486251 30.877 285 155 6 179 422 177 460 7.80e-39 145
Msa1099940 MtrunA17_Chr6g0486201 30.877 285 155 6 179 422 177 460 7.80e-39 145
Msa1099940 MtrunA17_Chr5g0410941 25.684 475 281 11 13 426 26 489 1.01e-38 145
Msa1099940 MtrunA17_Chr6g0463891 26.978 493 260 18 12 426 14 484 1.02e-38 145
Msa1099940 MtrunA17_Chr8g0339451 29.855 345 179 10 121 405 101 442 1.25e-38 145
Msa1099940 MtrunA17_Chr8g0369341 27.273 473 281 12 6 424 3 466 1.43e-38 145
Msa1099940 MtrunA17_Chr4g0066261 26.829 492 258 14 13 426 14 481 1.60e-38 145
Msa1099940 MtrunA17_Chr5g0432731 31.250 304 154 7 167 427 6 297 3.30e-38 140
Msa1099940 MtrunA17_Chr8g0374901 27.660 470 278 17 13 426 15 478 3.56e-38 144
Msa1099940 MtrunA17_Chr8g0339601 38.021 192 99 4 234 405 118 309 3.56e-38 141
Msa1099940 MtrunA17_Chr4g0066201 27.984 486 246 17 13 426 21 474 3.60e-38 144
Msa1099940 MtrunA17_Chr8g0336731 28.571 357 198 8 121 423 134 487 3.82e-38 144
Msa1099940 MtrunA17_Chr2g0329111 27.273 495 261 17 7 423 3 476 5.07e-38 144
Msa1099940 MtrunA17_Chr7g0265111 24.899 494 279 13 10 427 39 516 7.68e-38 144
Msa1099940 MtrunA17_Chr8g0339441 29.698 431 246 15 7 405 3 408 1.25e-37 142
Msa1099940 MtrunA17_Chr8g0361371 25.941 478 279 13 7 423 4 467 1.34e-37 142
Msa1099940 MtrunA17_Chr6g0454111 50.714 140 34 1 173 277 44 183 1.48e-37 135
Msa1099940 MtrunA17_Chr5g0416821 26.875 480 264 15 12 426 16 473 1.77e-37 142
Msa1099940 MtrunA17_Chr7g0232331 25.536 466 256 14 7 405 3 444 1.79e-37 142
Msa1099940 MtrunA17_Chr3g0079731 25.988 481 278 13 12 424 8 478 1.43e-36 139
Msa1099940 MtrunA17_Chr7g0232341 29.236 301 154 8 168 417 170 462 2.45e-36 139
Msa1099940 MtrunA17_Chr4g0044521 35.000 220 111 6 230 424 252 464 3.71e-36 138
Msa1099940 MtrunA17_Chr1g0153461 36.232 207 115 4 233 422 2 208 3.79e-36 132
Msa1099940 MtrunA17_Chr5g0403641 34.389 221 119 5 235 431 289 507 6.53e-36 138
Msa1099940 MtrunA17_Chr8g0374941 25.410 488 268 17 13 426 952 1417 1.23e-35 140
Msa1099940 MtrunA17_Chr8g0374941 24.681 470 256 16 13 407 14 460 2.95e-33 133
Msa1099940 MtrunA17_Chr8g0374941 24.678 466 261 15 13 407 479 925 5.21e-33 132
Msa1099940 MtrunA17_Chr6g0463861 24.632 475 282 11 13 426 14 473 1.30e-35 137
Msa1099940 MtrunA17_Chr7g0243711 36.744 215 117 6 230 426 103 316 1.50e-35 134
Msa1099940 MtrunA17_Chr8g0374971 25.156 481 278 12 13 426 15 480 1.52e-35 137
Msa1099940 MtrunA17_Chr5g0442561 23.742 497 284 14 7 430 2 476 2.83e-35 136
Msa1099940 MtrunA17_Chr5g0429711 27.673 477 269 16 5 426 6 461 3.43e-35 135
Msa1099940 MtrunA17_Chr4g0066171 26.994 489 268 14 2 426 13 476 7.95e-35 135
Msa1099940 MtrunA17_Chr4g0044481 28.125 384 241 12 10 369 27 399 9.54e-35 134
Msa1099940 MtrunA17_Chr5g0442601 26.000 500 273 16 7 430 401 879 3.83e-34 135
Msa1099940 MtrunA17_Chr5g0442601 26.812 276 168 4 122 367 62 333 3.52e-24 105
Msa1099940 MtrunA17_Chr8g0350881 34.562 217 119 4 233 426 264 480 4.67e-34 132
Msa1099940 MtrunA17_Chr6g0454381 57.391 115 31 1 131 227 1 115 6.18e-34 124
Msa1099940 MtrunA17_Chr5g0442541 24.795 488 277 12 7 427 2 466 7.12e-34 132
Msa1099940 MtrunA17_Chr7g0241801 27.635 427 253 14 7 403 6 406 9.76e-34 131
Msa1099940 MtrunA17_Chr7g0241781 26.950 423 261 13 7 403 6 406 1.25e-33 130
Msa1099940 MtrunA17_Chr4g0042891 34.101 217 128 5 221 425 251 464 2.31e-33 130
Msa1099940 MtrunA17_Chr2g0294941 27.378 347 186 8 124 407 17 360 2.72e-33 129
Msa1099940 MtrunA17_Chr5g0448521 26.069 491 269 13 7 427 2 468 3.22e-33 130
Msa1099940 MtrunA17_Chr8g0334851 26.593 361 197 10 122 419 112 467 1.70e-32 128
Msa1099940 MtrunA17_Chr7g0243911 35.979 189 104 3 230 401 17 205 3.07e-32 122
Msa1099940 MtrunA17_Chr4g0042931 26.514 479 266 15 10 425 7 462 4.33e-32 127
Msa1099940 MtrunA17_Chr3g0106251 33.831 201 116 3 235 427 103 294 5.25e-32 124
Msa1099940 MtrunA17_Chr8g0334861 30.093 216 131 3 229 425 248 462 6.71e-32 126
Msa1099940 MtrunA17_Chr8g0334831 26.134 463 267 16 5 402 1 453 2.49e-31 125
Msa1099940 MtrunA17_Chr5g0442491 23.387 496 289 12 7 430 2 478 4.85e-31 124
Msa1099940 MtrunA17_Chr5g0442521 23.732 493 292 15 7 430 2 479 6.44e-31 124
Msa1099940 MtrunA17_Chr5g0442581 24.655 507 265 14 7 427 2 477 3.12e-30 122
Msa1099940 MtrunA17_Chr7g0243611 38.776 147 87 2 230 373 131 277 1.71e-29 116
Msa1099940 MtrunA17_Chr2g0278721 26.696 457 263 16 6 404 513 955 3.42e-29 120
Msa1099940 MtrunA17_Chr2g0278721 32.632 190 117 5 220 403 259 443 1.16e-21 98.2
Msa1099940 MtrunA17_Chr2g0307961 24.597 496 267 16 6 428 9 470 4.80e-29 118
Msa1099940 MtrunA17_Chr5g0442511 23.614 487 274 18 7 430 46 497 1.01e-28 117
Msa1099940 MtrunA17_Chr7g0243811 24.439 401 234 11 22 373 1 381 3.14e-28 115
Msa1099940 MtrunA17_Chr3g0079711 34.054 185 100 5 261 424 3 186 6.75e-28 109
Msa1099940 MtrunA17_Chr5g0431431 30.196 255 138 4 167 392 110 353 7.56e-28 113
Msa1099940 MtrunA17_Chr2g0302991 27.171 357 204 10 122 426 110 462 2.93e-27 113
Msa1099940 MtrunA17_Chr5g0429681 28.375 363 182 13 122 423 151 496 3.04e-27 113
Msa1099940 MtrunA17_Chr6g0482061 25.558 493 265 17 10 425 11 478 7.48e-27 112
Msa1099940 MtrunA17_Chr8g0361411 25.880 483 259 19 8 426 6 453 1.89e-26 110
Msa1099940 MtrunA17_Chr2g0302961 30.769 208 126 3 235 426 260 465 1.96e-26 110
Msa1099940 MtrunA17_Chr8g0336251 34.848 198 115 5 232 423 266 455 2.43e-26 110
Msa1099940 MtrunA17_Chr6g0454391 67.692 65 21 0 319 383 11 75 2.55e-26 102
Msa1099940 MtrunA17_Chr8g0336321 34.848 198 115 5 232 423 266 455 2.62e-26 110
Msa1099940 MtrunA17_Chr3g0092031 33.333 177 109 4 233 403 2 175 2.83e-26 105
Msa1099940 MtrunA17_Chr5g0427571 34.343 198 116 5 232 423 100 289 3.39e-26 107
Msa1099940 MtrunA17_Chr8g0367221 24.146 439 286 11 7 402 9 443 4.52e-26 111
Msa1099940 MtrunA17_Chr8g0367221 24.829 439 284 10 7 402 1285 1720 3.30e-24 105
Msa1099940 MtrunA17_Chr8g0367221 32.584 178 105 5 236 402 1057 1230 1.67e-19 91.7
Msa1099940 MtrunA17_Chr5g0409591 31.330 233 133 8 194 404 234 461 6.43e-26 109
Msa1099940 MtrunA17_Chr2g0302851 24.887 442 274 16 6 403 12 439 2.08e-25 107
Msa1099940 MtrunA17_Chr6g0466831 25.764 458 268 18 1 403 1 441 3.18e-25 107
Msa1099940 MtrunA17_Chr7g0232351 31.797 217 100 6 168 344 170 378 1.68e-24 104
Msa1099940 MtrunA17_Chr6g0466841 24.401 459 273 17 1 403 1 441 4.99e-24 103
Msa1099940 MtrunA17_Chr7g0231631 32.701 211 135 4 220 426 52 259 1.47e-23 99.8
Msa1099940 MtrunA17_Chr8g0357361 36.585 164 90 5 215 369 93 251 5.10e-23 97.8
Msa1099940 MtrunA17_Chr4g0069611 33.526 173 106 4 237 403 269 438 2.38e-22 99.0
Msa1099940 MtrunA17_Chr8g0337381 40.310 129 67 3 305 429 2 124 2.30e-21 89.7
Msa1099940 MtrunA17_Chr3g0118741 59.322 59 24 0 5 63 1 59 5.45e-21 86.7
Msa1099940 MtrunA17_Chr4g0039881 31.053 190 119 5 220 403 232 415 5.52e-21 94.7
Msa1099940 MtrunA17_Chr7g0250021 26.019 319 181 8 4 281 6 310 8.12e-21 92.8
Msa1099940 MtrunA17_Chr4g0066141 36.029 136 73 2 305 426 216 351 2.92e-20 91.7
Msa1099940 MtrunA17_Chr6g0464091 31.638 177 112 4 233 403 275 448 3.75e-20 92.4
Msa1099940 MtrunA17_Chr4g0029131 23.874 444 281 15 4 403 6 436 6.67e-20 92.4
Msa1099940 MtrunA17_Chr2g0278741 31.771 192 116 5 220 403 341 525 6.90e-20 92.0
Msa1099940 MtrunA17_Chr1g0196851 30.000 190 112 6 231 403 291 476 1.98e-19 90.5
Msa1099940 MtrunA17_Chr4g0040691 28.415 183 119 5 231 403 255 435 1.63e-17 84.3
Msa1099940 MtrunA17_Chr4g0040711 29.167 192 123 6 222 403 247 435 1.13e-16 82.0
Msa1099940 MtrunA17_Chr4g0029151 27.885 208 128 6 213 403 242 444 8.55e-16 79.3
Msa1099940 MtrunA17_Chr7g0243731 38.889 72 44 0 298 369 2 73 4.64e-14 67.4
Msa1099940 MtrunA17_Chr2g0283041 24.444 225 134 7 207 397 205 427 6.28e-14 73.6
Msa1099940 MtrunA17_Chr7g0267931 75.676 37 8 1 15 50 25 61 9.46e-14 65.9
Msa1099940 MtrunA17_Chr6g0454241 73.171 41 11 0 386 426 1 41 1.04e-13 66.2
Msa1099940 MtrunA17_Chr3g0118731 33.333 117 73 2 62 178 28 139 3.91e-13 67.0
Msa1099940 MtrunA17_Chr2g0319761 24.490 441 273 14 10 403 8 435 2.38e-12 68.6
Msa1099940 MtrunA17_Chr2g0319751 24.146 439 275 14 10 402 485 911 3.22e-12 68.9
Msa1099940 MtrunA17_Chr2g0319791 28.804 184 117 6 231 402 253 434 3.23e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1099940 AT1G22380.1 48.117 478 187 5 7 428 10 482 4.62e-160 461
Msa1099940 AT1G22340.1 47.433 487 192 7 2 429 3 484 2.28e-158 456
Msa1099940 AT1G22400.1 47.083 480 192 5 6 428 9 483 2.31e-158 456
Msa1099940 AT1G22360.1 46.901 484 196 5 1 428 1 479 1.07e-153 444
Msa1099940 AT1G22370.2 49.049 473 185 5 7 428 10 477 1.58e-152 441
Msa1099940 AT1G78270.1 44.351 478 205 6 6 427 9 481 1.32e-145 424
Msa1099940 AT1G22360.2 45.248 484 192 6 1 428 1 467 4.76e-144 419
Msa1099940 AT5G59590.1 36.681 458 231 11 7 423 7 446 9.70e-89 277
Msa1099940 AT1G22370.1 47.279 294 117 2 173 428 14 307 2.42e-85 263
Msa1099940 AT5G59580.1 36.105 457 232 11 8 423 7 444 1.25e-84 266
Msa1099940 AT3G46660.1 36.580 462 218 12 12 423 16 452 3.67e-83 263
Msa1099940 AT3G46670.1 35.230 457 233 11 10 423 9 445 7.69e-82 259
Msa1099940 AT3G46650.1 34.292 452 241 11 1 421 1 427 3.19e-80 254
Msa1099940 AT3G46700.1 34.056 461 241 10 7 426 6 444 4.21e-80 254
Msa1099940 AT3G11340.1 32.026 459 253 7 8 427 7 445 1.31e-79 253
Msa1099940 AT3G46680.1 33.476 466 240 11 5 423 4 446 5.75e-77 246
Msa1099940 AT3G46690.1 34.341 463 238 10 7 424 6 447 6.96e-76 244
Msa1099940 AT5G05860.1 32.391 460 251 10 10 428 9 449 6.41e-75 241
Msa1099940 AT3G46720.1 34.423 459 232 13 7 423 6 437 2.55e-74 239
Msa1099940 AT5G05890.1 33.040 454 252 8 10 423 8 449 6.04e-74 239
Msa1099940 AT5G05900.1 32.166 457 247 11 10 423 8 444 3.77e-73 236
Msa1099940 AT5G05880.1 32.159 454 252 9 10 423 8 445 3.79e-73 236
Msa1099940 AT5G38010.1 33.333 468 241 10 6 424 6 451 1.03e-72 236
Msa1099940 AT5G05870.1 32.829 463 257 8 10 430 8 458 2.56e-72 235
Msa1099940 AT5G38040.1 33.408 446 240 10 19 424 19 447 4.57e-71 231
Msa1099940 AT3G55700.1 31.602 462 250 12 12 427 10 451 6.74e-71 231
Msa1099940 AT3G02100.1 30.687 466 253 12 8 423 11 456 5.83e-66 218
Msa1099940 AT2G26480.1 28.875 471 262 9 7 430 5 449 1.56e-65 217
Msa1099940 AT3G21560.1 28.898 481 266 9 9 429 11 475 3.65e-65 217
Msa1099940 AT4G15500.1 29.325 474 262 10 9 427 8 463 2.97e-64 214
Msa1099940 AT4G15480.1 29.747 474 262 11 10 426 19 478 4.44e-64 214
Msa1099940 AT2G36970.1 28.306 484 283 13 1 430 1 474 4.68e-64 214
Msa1099940 AT4G15490.1 29.314 481 268 11 6 429 4 469 2.18e-63 212
Msa1099940 AT2G31750.2 29.854 479 254 13 8 430 6 458 9.32e-63 211
Msa1099940 AT2G31750.1 29.832 476 252 13 8 427 6 455 1.01e-62 209
Msa1099940 AT2G43820.1 29.560 477 253 14 6 429 3 449 1.04e-62 209
Msa1099940 AT3G55710.1 29.412 476 258 14 6 427 4 455 1.10e-62 209
Msa1099940 AT2G43840.2 28.998 469 262 12 8 429 5 449 2.57e-61 206
Msa1099940 AT2G43840.1 28.998 469 262 12 8 429 5 449 3.71e-61 205
Msa1099940 AT1G05680.1 30.901 466 248 13 10 425 6 447 7.37e-61 204
Msa1099940 AT2G31790.1 30.704 469 253 13 7 423 5 453 4.46e-60 202
Msa1099940 AT2G36770.1 27.416 507 270 14 2 430 6 492 3.61e-58 199
Msa1099940 AT1G05675.1 29.741 464 256 12 10 423 6 449 7.31e-57 194
Msa1099940 AT2G28080.1 29.614 466 267 12 14 430 22 475 3.61e-56 193
Msa1099940 AT4G01070.1 31.677 483 240 15 6 419 4 465 2.04e-55 191
Msa1099940 AT2G36750.1 29.234 496 252 16 10 427 10 484 9.16e-55 189
Msa1099940 AT2G36800.1 29.412 493 257 16 10 427 12 488 1.72e-54 189
Msa1099940 AT3G53160.1 29.630 486 264 16 10 427 8 483 1.04e-53 186
Msa1099940 AT4G34131.1 27.984 486 281 13 1 425 1 478 1.81e-53 186
Msa1099940 AT2G15480.1 27.686 484 288 10 1 426 1 480 1.92e-53 186
Msa1099940 AT2G36760.1 27.273 495 270 12 10 430 14 492 1.98e-53 186
Msa1099940 AT2G36780.1 27.879 495 261 14 10 427 14 489 3.78e-53 185
Msa1099940 AT2G36790.1 30.539 501 261 16 1 427 1 488 4.11e-52 182
Msa1099940 AT2G23250.1 28.384 458 261 11 13 426 1 435 5.87e-52 181
Msa1099940 AT4G15550.1 28.662 471 272 12 9 425 12 472 9.04e-52 181
Msa1099940 AT2G15480.2 27.419 496 284 12 1 426 1 490 2.37e-51 180
Msa1099940 AT1G05560.1 27.292 469 269 15 9 426 4 451 3.88e-51 179
Msa1099940 AT5G66690.1 27.479 484 263 14 8 425 5 466 7.54e-51 179
Msa1099940 AT5G17050.1 26.652 469 278 12 6 427 8 457 1.05e-50 178
Msa1099940 AT5G26310.1 27.743 483 263 16 8 425 5 466 1.07e-50 178
Msa1099940 AT1G05560.2 27.292 469 269 15 9 426 54 501 1.13e-50 179
Msa1099940 AT2G15490.3 28.482 481 270 12 10 426 7 477 4.43e-50 177
Msa1099940 AT5G17040.1 25.828 453 284 9 10 427 5 440 5.58e-50 176
Msa1099940 AT3G53150.1 27.092 502 275 13 7 427 19 510 6.82e-50 177
Msa1099940 AT2G15490.1 28.306 484 270 12 10 426 7 480 1.37e-49 175
Msa1099940 AT5G14860.1 29.854 479 273 14 5 426 3 475 3.18e-48 172
Msa1099940 AT2G23260.1 28.270 474 263 13 7 428 7 455 4.55e-48 171
Msa1099940 AT1G05530.1 27.463 477 265 13 8 427 3 455 5.78e-48 170
Msa1099940 AT1G30530.1 25.983 458 278 10 11 427 14 451 8.58e-48 170
Msa1099940 AT1G01420.1 28.908 467 268 12 9 422 7 462 1.54e-47 170
Msa1099940 AT1G01420.2 28.908 467 268 12 9 422 10 465 1.65e-47 170
Msa1099940 AT4G14090.1 27.706 462 276 14 6 425 9 454 3.02e-47 168
Msa1099940 AT5G17030.1 25.751 466 285 10 6 427 8 456 5.36e-47 168
Msa1099940 AT2G30140.2 26.709 468 270 11 6 426 9 450 4.47e-46 165
Msa1099940 AT2G30140.1 26.652 469 270 11 6 426 9 451 4.74e-46 165
Msa1099940 AT1G24100.1 29.412 476 253 17 8 426 9 458 1.06e-45 164
Msa1099940 AT5G17040.2 29.930 284 166 4 173 427 59 338 1.47e-45 161
Msa1099940 AT1G10400.1 27.331 472 276 13 7 425 4 461 3.14e-45 163
Msa1099940 AT4G34138.1 26.721 494 267 14 8 428 9 480 3.45e-45 164
Msa1099940 AT4G34135.1 26.078 487 280 13 6 425 7 480 2.13e-42 156
Msa1099940 AT3G22250.1 27.176 471 255 15 5 408 3 452 4.66e-42 154
Msa1099940 AT3G50740.1 26.230 488 270 17 8 425 5 472 7.59e-41 152
Msa1099940 AT2G16890.2 27.443 481 263 15 10 426 9 467 8.41e-41 151
Msa1099940 AT2G30150.2 26.226 469 265 14 10 426 13 452 6.07e-40 149
Msa1099940 AT3G16520.3 28.000 350 200 10 122 424 113 457 7.11e-40 149
Msa1099940 AT4G36770.1 28.261 460 249 15 10 407 4 444 3.35e-39 147
Msa1099940 AT3G16520.2 29.305 331 180 10 122 401 113 440 4.59e-39 146
Msa1099940 AT3G16520.1 29.305 331 180 10 122 401 113 440 5.69e-39 146
Msa1099940 AT2G30150.1 26.022 465 263 14 14 426 1 436 1.48e-38 145
Msa1099940 AT5G03490.1 26.981 467 274 15 6 425 15 461 7.09e-38 143
Msa1099940 AT1G01390.1 27.235 481 269 17 9 429 7 466 2.08e-37 142
Msa1099940 AT1G01390.2 27.235 481 269 17 9 429 24 483 2.33e-37 142
Msa1099940 AT5G37950.1 29.121 364 193 11 25 344 1 343 3.50e-37 139
Msa1099940 AT5G37950.2 29.167 360 192 11 25 344 1 337 7.30e-37 138
Msa1099940 AT1G73880.1 27.329 483 268 20 6 427 7 467 1.05e-36 140
Msa1099940 AT2G18560.1 27.394 376 203 12 105 419 3 369 4.22e-36 137
Msa1099940 AT2G29710.1 25.786 477 273 16 12 427 7 463 7.52e-36 137
Msa1099940 AT4G15280.1 25.051 487 276 10 12 427 6 474 1.41e-35 137
Msa1099940 AT4G15280.2 25.051 487 276 10 12 427 38 506 1.71e-35 137
Msa1099940 AT2G18570.1 25.370 473 276 16 8 419 3 459 2.53e-34 134
Msa1099940 AT3G21750.1 25.567 485 279 12 8 427 2 469 1.12e-33 132
Msa1099940 AT3G21800.1 25.662 491 267 13 12 426 7 475 9.79e-33 129
Msa1099940 AT4G15260.1 28.011 357 185 9 135 427 7 355 3.36e-32 125
Msa1099940 AT1G51210.1 27.107 439 251 17 8 401 18 432 1.20e-31 125
Msa1099940 AT2G29730.1 25.053 475 279 14 12 427 7 463 1.82e-30 122
Msa1099940 AT3G21790.1 25.103 486 288 11 12 430 6 482 1.91e-30 123
Msa1099940 AT2G16890.3 25.571 438 241 14 10 384 9 424 3.33e-30 121
Msa1099940 AT5G49690.1 26.097 433 261 16 10 398 10 427 5.55e-30 121
Msa1099940 AT3G21780.1 28.173 394 207 11 100 426 84 468 7.42e-30 121
Msa1099940 AT3G21760.1 24.440 491 287 10 12 430 6 484 4.77e-29 119
Msa1099940 AT1G07260.1 31.628 215 134 4 224 427 260 472 1.12e-28 117
Msa1099940 AT1G07250.1 29.151 271 146 6 199 427 207 473 2.88e-28 116
Msa1099940 AT2G29740.1 25.000 476 291 10 6 423 4 471 3.57e-28 116
Msa1099940 AT5G65550.1 34.857 175 105 4 236 404 269 440 1.18e-27 114
Msa1099940 AT1G06000.1 26.696 457 284 15 1 428 1 435 1.32e-27 114
Msa1099940 AT2G29750.1 25.105 478 283 14 12 427 10 474 1.11e-26 112
Msa1099940 AT5G12890.1 24.286 490 282 19 12 429 12 484 3.08e-26 110
Msa1099940 AT1G07240.1 25.912 274 151 5 201 427 208 476 7.15e-26 109
Msa1099940 AT2G22590.1 25.602 457 255 15 8 402 13 446 1.65e-25 108
Msa1099940 AT4G01070.2 29.909 331 164 11 6 289 4 313 1.55e-22 98.6
Msa1099940 AT4G27570.1 28.866 194 126 5 231 414 244 435 6.53e-20 92.0
Msa1099940 AT4G27560.1 28.351 194 127 5 231 414 244 435 7.30e-19 89.0
Msa1099940 AT4G34135.2 25.000 332 181 10 6 281 7 326 1.03e-18 87.4
Msa1099940 AT2G22930.1 23.451 452 291 13 10 426 6 437 2.40e-18 87.4
Msa1099940 AT1G64910.1 23.077 455 285 15 10 422 6 437 5.72e-18 86.3
Msa1099940 AT5G54010.1 24.622 463 268 18 5 414 1 435 2.06e-17 84.3
Msa1099940 AT4G09500.2 26.778 239 161 6 186 414 195 429 3.26e-17 84.0
Msa1099940 AT4G09500.1 23.923 418 286 12 10 414 6 404 8.90e-17 82.4
Msa1099940 AT3G29630.2 24.651 430 286 13 5 428 1 398 2.14e-16 81.3
Msa1099940 AT5G53990.1 26.455 189 127 5 237 415 244 430 1.94e-15 78.6
Msa1099940 AT3G29630.1 29.592 196 117 6 237 428 246 424 1.23e-14 75.9
Msa1099940 AT5G54060.1 30.387 181 117 5 231 402 262 442 7.26e-14 73.6
Msa1099940 AT1G64920.1 26.943 193 125 6 237 415 244 434 2.07e-13 72.4
Msa1099940 AT1G50580.1 22.009 468 297 16 5 430 1 442 3.72e-13 71.2

Find 99 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAAACTTCTTCATATTAA+AGG 0.147229 7_3:+29256179 Msa1099940:CDS
TTCAATGACAAATTCTAAAA+TGG 0.170437 7_3:-29257195 None:intergenic
CATCTTTAGGTTCCAATCTT+TGG 0.187417 7_3:+29257475 Msa1099940:intron
CAGATATATCTACAGTTTAT+TGG 0.189008 7_3:-29257870 None:intergenic
AGGATCTACCTGACGTAATA+AGG 0.250548 7_3:+29257153 Msa1099940:CDS
GTAGATATATCTGCAATATA+TGG 0.257183 7_3:+29257880 Msa1099940:CDS
GAACTTGGACAAGGTTATTA+AGG 0.278762 7_3:+29258064 Msa1099940:CDS
GGTATCTTCTTTCCAAAGAT+TGG 0.297807 7_3:-29257487 None:intergenic
TCAGCAACTTGTATGGTAAA+TGG 0.305820 7_3:-29256488 None:intergenic
ATATGCCCTTGAAGAGGATA+TGG 0.330531 7_3:-29256137 None:intergenic
ATGTTGTGTTGGCCATTCTA+TGG 0.374025 7_3:+29257840 Msa1099940:CDS
ACCGTTGAAAGCGTACTTGC+TGG 0.374267 7_3:+29257810 Msa1099940:CDS
GAATTGATGGTAGGGGATAA+AGG 0.377304 7_3:+29257963 Msa1099940:CDS
GTTGGTGAAAAGAGAAGGAT+TGG 0.388786 7_3:-29256524 None:intergenic
AGCAACTATTAGAATTTGCT+TGG 0.402138 7_3:+29257592 Msa1099940:CDS
AAACTCAGATGACATAATAA+AGG 0.403710 7_3:-29257679 None:intergenic
ATTAGAATTTGCTTGGGGTC+TGG 0.404857 7_3:+29257599 Msa1099940:CDS
GCAACTATTAGAATTTGCTT+GGG 0.407869 7_3:+29257593 Msa1099940:CDS
AGAGGTTCTAATTCTCTTGA+TGG 0.408792 7_3:+29256257 Msa1099940:CDS
GGCAAAATGCCGTAGAGTTA+AGG 0.409968 7_3:+29257997 Msa1099940:CDS
GTATGAATAACCACCGATAC+TGG 0.417370 7_3:-29258039 None:intergenic
TTGATTCCATATCCTCTTCA+AGG 0.418412 7_3:+29256131 Msa1099940:CDS
TCTGTTGTTTATGTAAGTTT+TGG 0.426684 7_3:+29257546 Msa1099940:CDS
GAAGCTGATCAATGAATTGA+TGG 0.428659 7_3:+29257950 Msa1099940:CDS
ATCTGCAATATATGGGAGAT+TGG 0.432181 7_3:+29257888 Msa1099940:CDS
GCAAATTCTAATAGTTGCTC+TGG 0.442504 7_3:-29257588 None:intergenic
TGCTTTCTTCCTTAACTCTA+CGG 0.448459 7_3:-29258006 None:intergenic
ATTAGGCATGATCTTGTCAT+TGG 0.451671 7_3:+29257651 Msa1099940:CDS
CCATTGGAGTTAGACCATCT+TGG 0.451949 7_3:-29256307 None:intergenic
ATTCTCTTCAGCAACTTGTA+TGG 0.457568 7_3:-29256495 None:intergenic
ATTGGTTGATCACCATAGAA+TGG 0.463883 7_3:-29257852 None:intergenic
GTATTGAACCACCCTTCAAT+TGG 0.464768 7_3:+29257756 Msa1099940:CDS
TCAATGACAAATTCTAAAAT+GGG 0.466000 7_3:-29257194 None:intergenic
AAGAACTTCATCAAACCCTT+TGG 0.468245 7_3:+29256383 Msa1099940:CDS
TGTCAAACATTGTACGAAAG+TGG 0.469912 7_3:-29256574 None:intergenic
TAGATATATCTGCAATATAT+GGG 0.475282 7_3:+29257881 Msa1099940:CDS
GATGGTCTCAAAGACAAAAT+CGG 0.478151 7_3:-29256285 None:intergenic
TCAGAAACTAAGCAAGTAAC+CGG 0.479562 7_3:-29256455 None:intergenic
TCTTGAATGGCTTGAATCAA+AGG 0.484419 7_3:+29257515 Msa1099940:CDS
CGATGCTGGTCTTATTCCAC+CGG 0.493380 7_3:+29256436 Msa1099940:CDS
GGATCTACCTGACGTAATAA+GGG 0.494934 7_3:+29257154 Msa1099940:CDS
CTTCATGACTCTGCCGATGC+TGG 0.495057 7_3:+29256422 Msa1099940:CDS
TTGAACCACCCTTCAATTGG+TGG 0.497309 7_3:+29257759 Msa1099940:CDS
TTAGAATTTGTCATTGAAGT+GGG 0.502488 7_3:+29257200 Msa1099940:CDS
AACCTCTTGATTTAAGCAAA+CGG 0.503323 7_3:-29256241 None:intergenic
TTCAAGCCATTCAAGACACT+TGG 0.503510 7_3:-29257508 None:intergenic
ACATCACCATTACCTTCCAT+TGG 0.505333 7_3:-29256323 None:intergenic
GTCTTTGAGACCATCCAAGA+TGG 0.507826 7_3:+29256293 Msa1099940:CDS
AGGCATGATCTTGTCATTGG+CGG 0.508411 7_3:+29257654 Msa1099940:CDS
TGGTTATTCATACATGAACT+TGG 0.509765 7_3:+29258049 Msa1099940:CDS
GATTCTTGTCTCACTGTGGA+TGG 0.512706 7_3:+29257781 Msa1099940:CDS
AAGATACCAAGTGTCTTGAA+TGG 0.518079 7_3:+29257502 Msa1099940:CDS
CTGATCAATGAATTGATGGT+AGG 0.518222 7_3:+29257954 Msa1099940:CDS
AACCGTTTGCTTAAATCAAG+AGG 0.522168 7_3:+29256239 Msa1099940:CDS
GACAAGAATCCACCAATTGA+AGG 0.523510 7_3:-29257768 None:intergenic
TGATCAATGAATTGATGGTA+GGG 0.527695 7_3:+29257955 Msa1099940:CDS
AAGAAGTTACATGCACTAGT+TGG 0.534801 7_3:-29256542 None:intergenic
TTTAGAATTTGTCATTGAAG+TGG 0.535263 7_3:+29257199 Msa1099940:CDS
CTGGAGTGCCAATGTTGTGT+TGG 0.538075 7_3:+29257829 Msa1099940:CDS
GAGAAAGAGATTTCAGATAG+AGG 0.538164 7_3:+29257702 Msa1099940:CDS
CACTAGTTGGTGAAAAGAGA+AGG 0.540423 7_3:-29256529 None:intergenic
AATTGCAAGCTGGTGTCCGC+AGG 0.540850 7_3:+29257728 Msa1099940:CDS
TCCAGCAAGTACGCTTTCAA+CGG 0.552557 7_3:-29257811 None:intergenic
ATTGCAGAACTTTCGACTGA+AGG 0.554683 7_3:+29257133 Msa1099940:CDS
CTAACTCCAATGGAAGGTAA+TGG 0.556057 7_3:+29256317 Msa1099940:CDS
CTAGCAAGAAGTTCACCAAA+GGG 0.558966 7_3:-29256398 None:intergenic
TCTGCAACCCTTATTACGTC+AGG 0.561278 7_3:-29257161 None:intergenic
GCAGAAGAGAACACCAGTAT+CGG 0.561831 7_3:+29258026 Msa1099940:CDS
CCAAGATGGTCTAACTCCAA+TGG 0.563528 7_3:+29256307 Msa1099940:CDS
CGGTGGAATAAGACCAGCAT+CGG 0.567219 7_3:-29256435 None:intergenic
TGATTCCATATCCTCTTCAA+GGG 0.591237 7_3:+29256132 Msa1099940:CDS
CAACTATTAGAATTTGCTTG+GGG 0.591814 7_3:+29257594 Msa1099940:CDS
GGGATAAAGGAAAGAAGATG+AGG 0.592268 7_3:+29257976 Msa1099940:CDS
TTTCGTACAATGTTTGACAA+AGG 0.592549 7_3:+29256578 Msa1099940:CDS
TTGGTGAAAAGAGAAGGATT+GGG 0.592979 7_3:-29256523 None:intergenic
CGCAAATGATTACCTTTGAG+CGG 0.593158 7_3:-29256608 None:intergenic
CTTACATAAACAACAGACTC+AGG 0.593616 7_3:-29257540 None:intergenic
ACAAGAATCCACCAATTGAA+GGG 0.599501 7_3:-29257767 None:intergenic
GATGGTCTAACTCCAATGGA+AGG 0.600300 7_3:+29256311 Msa1099940:CDS
GGATTTATATGCCCTTGAAG+AGG 0.602809 7_3:-29256143 None:intergenic
TAGAATGGCCAACACAACAT+TGG 0.602885 7_3:-29257837 None:intergenic
TGGAGTTAGACCATCTTGGA+TGG 0.607818 7_3:-29256303 None:intergenic
CTTGGACAAGGTTATTAAGG+AGG 0.609792 7_3:+29258067 Msa1099940:CDS
TATGGAATCAACACAGCATG+TGG 0.611821 7_3:-29256119 None:intergenic
CGATACTAATGTGAAGAGAG+AGG 0.613823 7_3:+29257920 Msa1099940:CDS
TGGTGATGTTAGTCAAGACT+TGG 0.614973 7_3:+29256337 Msa1099940:CDS
ATAGAGGTCTAATTGCAAGC+TGG 0.620216 7_3:+29257718 Msa1099940:CDS
AAAGGTCTAATACCGCTCAA+AGG 0.620948 7_3:+29256596 Msa1099940:CDS
ATTGTATTCTGTATTGACAA+AGG 0.621699 7_3:-29256213 None:intergenic
GATCAATGAATTGATGGTAG+GGG 0.630291 7_3:+29257956 Msa1099940:CDS
TCTAGCAAGAAGTTCACCAA+AGG 0.630305 7_3:-29256399 None:intergenic
TTCATACATGAACTTGGACA+AGG 0.630575 7_3:+29258055 Msa1099940:CDS
AGTGTTAAAGATAATAGCAG+AGG 0.636008 7_3:-29257240 None:intergenic
TGGTTCAATACTTGCTCCTG+CGG 0.645330 7_3:-29257744 None:intergenic
GAAACTAAGCAAGTAACCGG+TGG 0.654329 7_3:-29256452 None:intergenic
GGTGGATTCTTGTCTCACTG+TGG 0.667332 7_3:+29257777 Msa1099940:CDS
GAAGAGAACACCAGTATCGG+TGG 0.672004 7_3:+29258029 Msa1099940:CDS
AGAATCCACCAATTGAAGGG+TGG 0.694128 7_3:-29257764 None:intergenic
TACTAATGTGAAGAGAGAGG+AGG 0.697666 7_3:+29257923 Msa1099940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGAGAACTTTTAATTTGA+CGG + chr7_3:29256776-29256795 Msa1099940:intron 20.0%
!!! TCAATGACAAATTCTAAAAT+GGG - chr7_3:29257197-29257216 None:intergenic 20.0%
!!! TTCAATGACAAATTCTAAAA+TGG - chr7_3:29257198-29257217 None:intergenic 20.0%
!! TAGATATATCTGCAATATAT+GGG + chr7_3:29257881-29257900 Msa1099940:CDS 20.0%
!!! AATGAGAACTTTTAATTTGA+CGG + chr7_3:29256776-29256795 Msa1099940:intron 20.0%
!!! TCAATGACAAATTCTAAAAT+GGG - chr7_3:29257197-29257216 None:intergenic 20.0%
!!! TTCAATGACAAATTCTAAAA+TGG - chr7_3:29257198-29257217 None:intergenic 20.0%
!! TAGATATATCTGCAATATAT+GGG + chr7_3:29257881-29257900 Msa1099940:CDS 20.0%
! GCAAAACTTCTTCATATTAA+AGG + chr7_3:29256179-29256198 Msa1099940:CDS 25.0%
!! ATTGTATTCTGTATTGACAA+AGG - chr7_3:29256216-29256235 None:intergenic 25.0%
!!! ATTGATAATGACTCATTAAC+CGG + chr7_3:29256819-29256838 Msa1099940:intron 25.0%
!! TTTAGAATTTGTCATTGAAG+TGG + chr7_3:29257199-29257218 Msa1099940:CDS 25.0%
! TTAGAATTTGTCATTGAAGT+GGG + chr7_3:29257200-29257219 Msa1099940:CDS 25.0%
!!! TCTGTTGTTTATGTAAGTTT+TGG + chr7_3:29257546-29257565 Msa1099940:CDS 25.0%
! AAACTCAGATGACATAATAA+AGG - chr7_3:29257682-29257701 None:intergenic 25.0%
! CAGATATATCTACAGTTTAT+TGG - chr7_3:29257873-29257892 None:intergenic 25.0%
! GTAGATATATCTGCAATATA+TGG + chr7_3:29257880-29257899 Msa1099940:CDS 25.0%
! GCAAAACTTCTTCATATTAA+AGG + chr7_3:29256179-29256198 Msa1099940:CDS 25.0%
!! ATTGTATTCTGTATTGACAA+AGG - chr7_3:29256216-29256235 None:intergenic 25.0%
!!! ATTGATAATGACTCATTAAC+CGG + chr7_3:29256819-29256838 Msa1099940:intron 25.0%
!! TTTAGAATTTGTCATTGAAG+TGG + chr7_3:29257199-29257218 Msa1099940:CDS 25.0%
! TTAGAATTTGTCATTGAAGT+GGG + chr7_3:29257200-29257219 Msa1099940:CDS 25.0%
!!! TCTGTTGTTTATGTAAGTTT+TGG + chr7_3:29257546-29257565 Msa1099940:CDS 25.0%
! AAACTCAGATGACATAATAA+AGG - chr7_3:29257682-29257701 None:intergenic 25.0%
! CAGATATATCTACAGTTTAT+TGG - chr7_3:29257873-29257892 None:intergenic 25.0%
! GTAGATATATCTGCAATATA+TGG + chr7_3:29257880-29257899 Msa1099940:CDS 25.0%
AACCTCTTGATTTAAGCAAA+CGG - chr7_3:29256244-29256263 None:intergenic 30.0%
TTTCGTACAATGTTTGACAA+AGG + chr7_3:29256578-29256597 Msa1099940:CDS 30.0%
!!! AGAACTTTTAATTTGACGGT+TGG + chr7_3:29256780-29256799 Msa1099940:intron 30.0%
ATGAGCTTGTCAAATTATGT+GGG - chr7_3:29256982-29257001 None:intergenic 30.0%
TATGAGCTTGTCAAATTATG+TGG - chr7_3:29256983-29257002 None:intergenic 30.0%
AGTGTTAAAGATAATAGCAG+AGG - chr7_3:29257243-29257262 None:intergenic 30.0%
TGATTTAGTAGTGAAGGTAA+TGG - chr7_3:29257435-29257454 None:intergenic 30.0%
TCAAACTCCACATAATAACT+TGG + chr7_3:29257452-29257471 Msa1099940:intron 30.0%
AAAGATGCCAAGTTATTATG+TGG - chr7_3:29257462-29257481 None:intergenic 30.0%
CATAATAACTTGGCATCTTT+AGG + chr7_3:29257462-29257481 Msa1099940:intron 30.0%
! AGCAACTATTAGAATTTGCT+TGG + chr7_3:29257592-29257611 Msa1099940:CDS 30.0%
! GCAACTATTAGAATTTGCTT+GGG + chr7_3:29257593-29257612 Msa1099940:CDS 30.0%
! CAACTATTAGAATTTGCTTG+GGG + chr7_3:29257594-29257613 Msa1099940:CDS 30.0%
! CAAAAATGGTTTCTTGCTAT+TGG - chr7_3:29257625-29257644 None:intergenic 30.0%
!! ATAGCAAGAAACCATTTTTG+TGG + chr7_3:29257625-29257644 Msa1099940:CDS 30.0%
!! AACCATTTTTGTGGATCATT+AGG + chr7_3:29257634-29257653 Msa1099940:CDS 30.0%
! TGATCAATGAATTGATGGTA+GGG + chr7_3:29257955-29257974 Msa1099940:CDS 30.0%
TGGTTATTCATACATGAACT+TGG + chr7_3:29258049-29258068 Msa1099940:CDS 30.0%
AACCTCTTGATTTAAGCAAA+CGG - chr7_3:29256244-29256263 None:intergenic 30.0%
TTTCGTACAATGTTTGACAA+AGG + chr7_3:29256578-29256597 Msa1099940:CDS 30.0%
!!! AGAACTTTTAATTTGACGGT+TGG + chr7_3:29256780-29256799 Msa1099940:intron 30.0%
ATGAGCTTGTCAAATTATGT+GGG - chr7_3:29256982-29257001 None:intergenic 30.0%
TATGAGCTTGTCAAATTATG+TGG - chr7_3:29256983-29257002 None:intergenic 30.0%
AGTGTTAAAGATAATAGCAG+AGG - chr7_3:29257243-29257262 None:intergenic 30.0%
TGATTTAGTAGTGAAGGTAA+TGG - chr7_3:29257435-29257454 None:intergenic 30.0%
TCAAACTCCACATAATAACT+TGG + chr7_3:29257452-29257471 Msa1099940:intron 30.0%
AAAGATGCCAAGTTATTATG+TGG - chr7_3:29257462-29257481 None:intergenic 30.0%
CATAATAACTTGGCATCTTT+AGG + chr7_3:29257462-29257481 Msa1099940:intron 30.0%
! AGCAACTATTAGAATTTGCT+TGG + chr7_3:29257592-29257611 Msa1099940:CDS 30.0%
! GCAACTATTAGAATTTGCTT+GGG + chr7_3:29257593-29257612 Msa1099940:CDS 30.0%
! CAACTATTAGAATTTGCTTG+GGG + chr7_3:29257594-29257613 Msa1099940:CDS 30.0%
! CAAAAATGGTTTCTTGCTAT+TGG - chr7_3:29257625-29257644 None:intergenic 30.0%
!! ATAGCAAGAAACCATTTTTG+TGG + chr7_3:29257625-29257644 Msa1099940:CDS 30.0%
!! AACCATTTTTGTGGATCATT+AGG + chr7_3:29257634-29257653 Msa1099940:CDS 30.0%
! TGATCAATGAATTGATGGTA+GGG + chr7_3:29257955-29257974 Msa1099940:CDS 30.0%
TGGTTATTCATACATGAACT+TGG + chr7_3:29258049-29258068 Msa1099940:CDS 30.0%
TTGATTCCATATCCTCTTCA+AGG + chr7_3:29256131-29256150 Msa1099940:CDS 35.0%
TGATTCCATATCCTCTTCAA+GGG + chr7_3:29256132-29256151 Msa1099940:CDS 35.0%
!!! AGTTTTGCTAGTTTTAGCAG+TGG - chr7_3:29256167-29256186 None:intergenic 35.0%
AACCGTTTGCTTAAATCAAG+AGG + chr7_3:29256239-29256258 Msa1099940:CDS 35.0%
! AGAGGTTCTAATTCTCTTGA+TGG + chr7_3:29256257-29256276 Msa1099940:CDS 35.0%
GATGGTCTCAAAGACAAAAT+CGG - chr7_3:29256288-29256307 None:intergenic 35.0%
AAGAACTTCATCAAACCCTT+TGG + chr7_3:29256383-29256402 Msa1099940:CDS 35.0%
TCAGAAACTAAGCAAGTAAC+CGG - chr7_3:29256458-29256477 None:intergenic 35.0%
TCAGCAACTTGTATGGTAAA+TGG - chr7_3:29256491-29256510 None:intergenic 35.0%
ATTCTCTTCAGCAACTTGTA+TGG - chr7_3:29256498-29256517 None:intergenic 35.0%
TTGGTGAAAAGAGAAGGATT+GGG - chr7_3:29256526-29256545 None:intergenic 35.0%
AAGAAGTTACATGCACTAGT+TGG - chr7_3:29256545-29256564 None:intergenic 35.0%
TGTCAAACATTGTACGAAAG+TGG - chr7_3:29256577-29256596 None:intergenic 35.0%
CAACTCGTCAAATTGCTATA+AGG - chr7_3:29256748-29256767 None:intergenic 35.0%
GTAATATTGAGTAGAGTCAC+CGG - chr7_3:29256841-29256860 None:intergenic 35.0%
!! AAAGAAGTCAATAGCTTGCT+AGG - chr7_3:29257055-29257074 None:intergenic 35.0%
TCCTGGAATACAGTTTACTT+TGG - chr7_3:29257114-29257133 None:intergenic 35.0%
! GGAGTTTGATTTAGTAGTGA+AGG - chr7_3:29257441-29257460 None:intergenic 35.0%
! CATCTTTAGGTTCCAATCTT+TGG + chr7_3:29257475-29257494 Msa1099940:intron 35.0%
GGTATCTTCTTTCCAAAGAT+TGG - chr7_3:29257490-29257509 None:intergenic 35.0%
AAGATACCAAGTGTCTTGAA+TGG + chr7_3:29257502-29257521 Msa1099940:CDS 35.0%
TCTTGAATGGCTTGAATCAA+AGG + chr7_3:29257515-29257534 Msa1099940:CDS 35.0%
CTTACATAAACAACAGACTC+AGG - chr7_3:29257543-29257562 None:intergenic 35.0%
GCAAATTCTAATAGTTGCTC+TGG - chr7_3:29257591-29257610 None:intergenic 35.0%
TGCCTAATGATCCACAAAAA+TGG - chr7_3:29257639-29257658 None:intergenic 35.0%
ATTAGGCATGATCTTGTCAT+TGG + chr7_3:29257651-29257670 Msa1099940:CDS 35.0%
GAGAAAGAGATTTCAGATAG+AGG + chr7_3:29257702-29257721 Msa1099940:CDS 35.0%
ACAAGAATCCACCAATTGAA+GGG - chr7_3:29257770-29257789 None:intergenic 35.0%
ATTGGTTGATCACCATAGAA+TGG - chr7_3:29257855-29257874 None:intergenic 35.0%
ATCTGCAATATATGGGAGAT+TGG + chr7_3:29257888-29257907 Msa1099940:CDS 35.0%
GAAGCTGATCAATGAATTGA+TGG + chr7_3:29257950-29257969 Msa1099940:CDS 35.0%
! CTGATCAATGAATTGATGGT+AGG + chr7_3:29257954-29257973 Msa1099940:CDS 35.0%
! GATCAATGAATTGATGGTAG+GGG + chr7_3:29257956-29257975 Msa1099940:CDS 35.0%
TGCTTTCTTCCTTAACTCTA+CGG - chr7_3:29258009-29258028 None:intergenic 35.0%
TTCATACATGAACTTGGACA+AGG + chr7_3:29258055-29258074 Msa1099940:CDS 35.0%
GAACTTGGACAAGGTTATTA+AGG + chr7_3:29258064-29258083 Msa1099940:CDS 35.0%
TTGATTCCATATCCTCTTCA+AGG + chr7_3:29256131-29256150 Msa1099940:CDS 35.0%
TGATTCCATATCCTCTTCAA+GGG + chr7_3:29256132-29256151 Msa1099940:CDS 35.0%
!!! AGTTTTGCTAGTTTTAGCAG+TGG - chr7_3:29256167-29256186 None:intergenic 35.0%
AACCGTTTGCTTAAATCAAG+AGG + chr7_3:29256239-29256258 Msa1099940:CDS 35.0%
! AGAGGTTCTAATTCTCTTGA+TGG + chr7_3:29256257-29256276 Msa1099940:CDS 35.0%
GATGGTCTCAAAGACAAAAT+CGG - chr7_3:29256288-29256307 None:intergenic 35.0%
AAGAACTTCATCAAACCCTT+TGG + chr7_3:29256383-29256402 Msa1099940:CDS 35.0%
TCAGAAACTAAGCAAGTAAC+CGG - chr7_3:29256458-29256477 None:intergenic 35.0%
TCAGCAACTTGTATGGTAAA+TGG - chr7_3:29256491-29256510 None:intergenic 35.0%
ATTCTCTTCAGCAACTTGTA+TGG - chr7_3:29256498-29256517 None:intergenic 35.0%
TTGGTGAAAAGAGAAGGATT+GGG - chr7_3:29256526-29256545 None:intergenic 35.0%
AAGAAGTTACATGCACTAGT+TGG - chr7_3:29256545-29256564 None:intergenic 35.0%
TGTCAAACATTGTACGAAAG+TGG - chr7_3:29256577-29256596 None:intergenic 35.0%
CAACTCGTCAAATTGCTATA+AGG - chr7_3:29256748-29256767 None:intergenic 35.0%
GTAATATTGAGTAGAGTCAC+CGG - chr7_3:29256841-29256860 None:intergenic 35.0%
!! AAAGAAGTCAATAGCTTGCT+AGG - chr7_3:29257055-29257074 None:intergenic 35.0%
TCCTGGAATACAGTTTACTT+TGG - chr7_3:29257114-29257133 None:intergenic 35.0%
! GGAGTTTGATTTAGTAGTGA+AGG - chr7_3:29257441-29257460 None:intergenic 35.0%
! CATCTTTAGGTTCCAATCTT+TGG + chr7_3:29257475-29257494 Msa1099940:intron 35.0%
GGTATCTTCTTTCCAAAGAT+TGG - chr7_3:29257490-29257509 None:intergenic 35.0%
AAGATACCAAGTGTCTTGAA+TGG + chr7_3:29257502-29257521 Msa1099940:CDS 35.0%
TCTTGAATGGCTTGAATCAA+AGG + chr7_3:29257515-29257534 Msa1099940:CDS 35.0%
CTTACATAAACAACAGACTC+AGG - chr7_3:29257543-29257562 None:intergenic 35.0%
GCAAATTCTAATAGTTGCTC+TGG - chr7_3:29257591-29257610 None:intergenic 35.0%
TGCCTAATGATCCACAAAAA+TGG - chr7_3:29257639-29257658 None:intergenic 35.0%
ATTAGGCATGATCTTGTCAT+TGG + chr7_3:29257651-29257670 Msa1099940:CDS 35.0%
GAGAAAGAGATTTCAGATAG+AGG + chr7_3:29257702-29257721 Msa1099940:CDS 35.0%
ACAAGAATCCACCAATTGAA+GGG - chr7_3:29257770-29257789 None:intergenic 35.0%
ATTGGTTGATCACCATAGAA+TGG - chr7_3:29257855-29257874 None:intergenic 35.0%
ATCTGCAATATATGGGAGAT+TGG + chr7_3:29257888-29257907 Msa1099940:CDS 35.0%
GAAGCTGATCAATGAATTGA+TGG + chr7_3:29257950-29257969 Msa1099940:CDS 35.0%
! CTGATCAATGAATTGATGGT+AGG + chr7_3:29257954-29257973 Msa1099940:CDS 35.0%
! GATCAATGAATTGATGGTAG+GGG + chr7_3:29257956-29257975 Msa1099940:CDS 35.0%
TGCTTTCTTCCTTAACTCTA+CGG - chr7_3:29258009-29258028 None:intergenic 35.0%
TTCATACATGAACTTGGACA+AGG + chr7_3:29258055-29258074 Msa1099940:CDS 35.0%
GAACTTGGACAAGGTTATTA+AGG + chr7_3:29258064-29258083 Msa1099940:CDS 35.0%
TATGGAATCAACACAGCATG+TGG - chr7_3:29256122-29256141 None:intergenic 40.0%
ATATGCCCTTGAAGAGGATA+TGG - chr7_3:29256140-29256159 None:intergenic 40.0%
GGATTTATATGCCCTTGAAG+AGG - chr7_3:29256146-29256165 None:intergenic 40.0%
CTAACTCCAATGGAAGGTAA+TGG + chr7_3:29256317-29256336 Msa1099940:CDS 40.0%
ACATCACCATTACCTTCCAT+TGG - chr7_3:29256326-29256345 None:intergenic 40.0%
! TGGTGATGTTAGTCAAGACT+TGG + chr7_3:29256337-29256356 Msa1099940:CDS 40.0%
CTAGCAAGAAGTTCACCAAA+GGG - chr7_3:29256401-29256420 None:intergenic 40.0%
TCTAGCAAGAAGTTCACCAA+AGG - chr7_3:29256402-29256421 None:intergenic 40.0%
! GTTGGTGAAAAGAGAAGGAT+TGG - chr7_3:29256527-29256546 None:intergenic 40.0%
!! CACTAGTTGGTGAAAAGAGA+AGG - chr7_3:29256532-29256551 None:intergenic 40.0%
AAAGGTCTAATACCGCTCAA+AGG + chr7_3:29256596-29256615 Msa1099940:CDS 40.0%
CGCAAATGATTACCTTTGAG+CGG - chr7_3:29256611-29256630 None:intergenic 40.0%
GCCAAAGTAAACTGTATTCC+AGG + chr7_3:29257110-29257129 Msa1099940:intron 40.0%
ATTGCAGAACTTTCGACTGA+AGG + chr7_3:29257133-29257152 Msa1099940:CDS 40.0%
AGGATCTACCTGACGTAATA+AGG + chr7_3:29257153-29257172 Msa1099940:CDS 40.0%
GGATCTACCTGACGTAATAA+GGG + chr7_3:29257154-29257173 Msa1099940:CDS 40.0%
! TAGTGAAGGTAATGGTCCAA+CGG - chr7_3:29257427-29257446 None:intergenic 40.0%
TTCAAGCCATTCAAGACACT+TGG - chr7_3:29257511-29257530 None:intergenic 40.0%
! ATTAGAATTTGCTTGGGGTC+TGG + chr7_3:29257599-29257618 Msa1099940:CDS 40.0%
ATAGAGGTCTAATTGCAAGC+TGG + chr7_3:29257718-29257737 Msa1099940:CDS 40.0%
GTATTGAACCACCCTTCAAT+TGG + chr7_3:29257756-29257775 Msa1099940:CDS 40.0%
GACAAGAATCCACCAATTGA+AGG - chr7_3:29257771-29257790 None:intergenic 40.0%
TAGAATGGCCAACACAACAT+TGG - chr7_3:29257840-29257859 None:intergenic 40.0%
! ATGTTGTGTTGGCCATTCTA+TGG + chr7_3:29257840-29257859 Msa1099940:CDS 40.0%
CGATACTAATGTGAAGAGAG+AGG + chr7_3:29257920-29257939 Msa1099940:CDS 40.0%
TACTAATGTGAAGAGAGAGG+AGG + chr7_3:29257923-29257942 Msa1099940:CDS 40.0%
! GAATTGATGGTAGGGGATAA+AGG + chr7_3:29257963-29257982 Msa1099940:CDS 40.0%
GGGATAAAGGAAAGAAGATG+AGG + chr7_3:29257976-29257995 Msa1099940:CDS 40.0%
GTATGAATAACCACCGATAC+TGG - chr7_3:29258042-29258061 None:intergenic 40.0%
CTTGGACAAGGTTATTAAGG+AGG + chr7_3:29258067-29258086 Msa1099940:CDS 40.0%
TATGGAATCAACACAGCATG+TGG - chr7_3:29256122-29256141 None:intergenic 40.0%
ATATGCCCTTGAAGAGGATA+TGG - chr7_3:29256140-29256159 None:intergenic 40.0%
GGATTTATATGCCCTTGAAG+AGG - chr7_3:29256146-29256165 None:intergenic 40.0%
CTAACTCCAATGGAAGGTAA+TGG + chr7_3:29256317-29256336 Msa1099940:CDS 40.0%
ACATCACCATTACCTTCCAT+TGG - chr7_3:29256326-29256345 None:intergenic 40.0%
! TGGTGATGTTAGTCAAGACT+TGG + chr7_3:29256337-29256356 Msa1099940:CDS 40.0%
CTAGCAAGAAGTTCACCAAA+GGG - chr7_3:29256401-29256420 None:intergenic 40.0%
TCTAGCAAGAAGTTCACCAA+AGG - chr7_3:29256402-29256421 None:intergenic 40.0%
! GTTGGTGAAAAGAGAAGGAT+TGG - chr7_3:29256527-29256546 None:intergenic 40.0%
!! CACTAGTTGGTGAAAAGAGA+AGG - chr7_3:29256532-29256551 None:intergenic 40.0%
AAAGGTCTAATACCGCTCAA+AGG + chr7_3:29256596-29256615 Msa1099940:CDS 40.0%
CGCAAATGATTACCTTTGAG+CGG - chr7_3:29256611-29256630 None:intergenic 40.0%
GCCAAAGTAAACTGTATTCC+AGG + chr7_3:29257110-29257129 Msa1099940:intron 40.0%
ATTGCAGAACTTTCGACTGA+AGG + chr7_3:29257133-29257152 Msa1099940:CDS 40.0%
AGGATCTACCTGACGTAATA+AGG + chr7_3:29257153-29257172 Msa1099940:CDS 40.0%
GGATCTACCTGACGTAATAA+GGG + chr7_3:29257154-29257173 Msa1099940:CDS 40.0%
! TAGTGAAGGTAATGGTCCAA+CGG - chr7_3:29257427-29257446 None:intergenic 40.0%
TTCAAGCCATTCAAGACACT+TGG - chr7_3:29257511-29257530 None:intergenic 40.0%
! ATTAGAATTTGCTTGGGGTC+TGG + chr7_3:29257599-29257618 Msa1099940:CDS 40.0%
ATAGAGGTCTAATTGCAAGC+TGG + chr7_3:29257718-29257737 Msa1099940:CDS 40.0%
GTATTGAACCACCCTTCAAT+TGG + chr7_3:29257756-29257775 Msa1099940:CDS 40.0%
GACAAGAATCCACCAATTGA+AGG - chr7_3:29257771-29257790 None:intergenic 40.0%
TAGAATGGCCAACACAACAT+TGG - chr7_3:29257840-29257859 None:intergenic 40.0%
! ATGTTGTGTTGGCCATTCTA+TGG + chr7_3:29257840-29257859 Msa1099940:CDS 40.0%
CGATACTAATGTGAAGAGAG+AGG + chr7_3:29257920-29257939 Msa1099940:CDS 40.0%
TACTAATGTGAAGAGAGAGG+AGG + chr7_3:29257923-29257942 Msa1099940:CDS 40.0%
! GAATTGATGGTAGGGGATAA+AGG + chr7_3:29257963-29257982 Msa1099940:CDS 40.0%
GGGATAAAGGAAAGAAGATG+AGG + chr7_3:29257976-29257995 Msa1099940:CDS 40.0%
GTATGAATAACCACCGATAC+TGG - chr7_3:29258042-29258061 None:intergenic 40.0%
CTTGGACAAGGTTATTAAGG+AGG + chr7_3:29258067-29258086 Msa1099940:CDS 40.0%
!! GTCTTTGAGACCATCCAAGA+TGG + chr7_3:29256293-29256312 Msa1099940:CDS 45.0%
TGGAGTTAGACCATCTTGGA+TGG - chr7_3:29256306-29256325 None:intergenic 45.0%
CCATTGGAGTTAGACCATCT+TGG - chr7_3:29256310-29256329 None:intergenic 45.0%
CCAAGATGGTCTAACTCCAA+TGG + chr7_3:29256307-29256326 Msa1099940:CDS 45.0%
GATGGTCTAACTCCAATGGA+AGG + chr7_3:29256311-29256330 Msa1099940:CDS 45.0%
GAAACTAAGCAAGTAACCGG+TGG - chr7_3:29256455-29256474 None:intergenic 45.0%
AGTCGAAAGTTCTGCAATCC+TGG - chr7_3:29257131-29257150 None:intergenic 45.0%
TCTGCAACCCTTATTACGTC+AGG - chr7_3:29257164-29257183 None:intergenic 45.0%
AGGCATGATCTTGTCATTGG+CGG + chr7_3:29257654-29257673 Msa1099940:CDS 45.0%
TGGTTCAATACTTGCTCCTG+CGG - chr7_3:29257747-29257766 None:intergenic 45.0%
TTGAACCACCCTTCAATTGG+TGG + chr7_3:29257759-29257778 Msa1099940:CDS 45.0%
AGAATCCACCAATTGAAGGG+TGG - chr7_3:29257767-29257786 None:intergenic 45.0%
GATTCTTGTCTCACTGTGGA+TGG + chr7_3:29257781-29257800 Msa1099940:CDS 45.0%
TCCAGCAAGTACGCTTTCAA+CGG - chr7_3:29257814-29257833 None:intergenic 45.0%
GGCAAAATGCCGTAGAGTTA+AGG + chr7_3:29257997-29258016 Msa1099940:CDS 45.0%
GCAGAAGAGAACACCAGTAT+CGG + chr7_3:29258026-29258045 Msa1099940:CDS 45.0%
!! GTCTTTGAGACCATCCAAGA+TGG + chr7_3:29256293-29256312 Msa1099940:CDS 45.0%
TGGAGTTAGACCATCTTGGA+TGG - chr7_3:29256306-29256325 None:intergenic 45.0%
CCATTGGAGTTAGACCATCT+TGG - chr7_3:29256310-29256329 None:intergenic 45.0%
CCAAGATGGTCTAACTCCAA+TGG + chr7_3:29256307-29256326 Msa1099940:CDS 45.0%
GATGGTCTAACTCCAATGGA+AGG + chr7_3:29256311-29256330 Msa1099940:CDS 45.0%
GAAACTAAGCAAGTAACCGG+TGG - chr7_3:29256455-29256474 None:intergenic 45.0%
AGTCGAAAGTTCTGCAATCC+TGG - chr7_3:29257131-29257150 None:intergenic 45.0%
TCTGCAACCCTTATTACGTC+AGG - chr7_3:29257164-29257183 None:intergenic 45.0%
AGGCATGATCTTGTCATTGG+CGG + chr7_3:29257654-29257673 Msa1099940:CDS 45.0%
TGGTTCAATACTTGCTCCTG+CGG - chr7_3:29257747-29257766 None:intergenic 45.0%
TTGAACCACCCTTCAATTGG+TGG + chr7_3:29257759-29257778 Msa1099940:CDS 45.0%
AGAATCCACCAATTGAAGGG+TGG - chr7_3:29257767-29257786 None:intergenic 45.0%
GATTCTTGTCTCACTGTGGA+TGG + chr7_3:29257781-29257800 Msa1099940:CDS 45.0%
TCCAGCAAGTACGCTTTCAA+CGG - chr7_3:29257814-29257833 None:intergenic 45.0%
GGCAAAATGCCGTAGAGTTA+AGG + chr7_3:29257997-29258016 Msa1099940:CDS 45.0%
GCAGAAGAGAACACCAGTAT+CGG + chr7_3:29258026-29258045 Msa1099940:CDS 45.0%
!! NNNNNNNNNTATATAATGAA+GGG - chr7_3:29257313-29257332 None:intergenic 5.0%
!! NNNNNNNNNNTATATAATGA+AGG - chr7_3:29257314-29257333 None:intergenic 5.0%
!! NNNNNNNNNTATATAATGAA+GGG - chr7_3:29257313-29257332 None:intergenic 5.0%
!! NNNNNNNNNNTATATAATGA+AGG - chr7_3:29257314-29257333 None:intergenic 5.0%
CGGTGGAATAAGACCAGCAT+CGG - chr7_3:29256438-29256457 None:intergenic 50.0%
!! CGATGCTGGTCTTATTCCAC+CGG + chr7_3:29256436-29256455 Msa1099940:CDS 50.0%
! GGTGGATTCTTGTCTCACTG+TGG + chr7_3:29257777-29257796 Msa1099940:CDS 50.0%
! ACCGTTGAAAGCGTACTTGC+TGG + chr7_3:29257810-29257829 Msa1099940:CDS 50.0%
! CTGGAGTGCCAATGTTGTGT+TGG + chr7_3:29257829-29257848 Msa1099940:CDS 50.0%
! GAAGAGAACACCAGTATCGG+TGG + chr7_3:29258029-29258048 Msa1099940:CDS 50.0%
CGGTGGAATAAGACCAGCAT+CGG - chr7_3:29256438-29256457 None:intergenic 50.0%
!! CGATGCTGGTCTTATTCCAC+CGG + chr7_3:29256436-29256455 Msa1099940:CDS 50.0%
! GGTGGATTCTTGTCTCACTG+TGG + chr7_3:29257777-29257796 Msa1099940:CDS 50.0%
! ACCGTTGAAAGCGTACTTGC+TGG + chr7_3:29257810-29257829 Msa1099940:CDS 50.0%
! CTGGAGTGCCAATGTTGTGT+TGG + chr7_3:29257829-29257848 Msa1099940:CDS 50.0%
! GAAGAGAACACCAGTATCGG+TGG + chr7_3:29258029-29258048 Msa1099940:CDS 50.0%
CTTCATGACTCTGCCGATGC+TGG + chr7_3:29256422-29256441 Msa1099940:CDS 55.0%
AATTGCAAGCTGGTGTCCGC+AGG + chr7_3:29257728-29257747 Msa1099940:CDS 55.0%
CTTCATGACTCTGCCGATGC+TGG + chr7_3:29256422-29256441 Msa1099940:CDS 55.0%
AATTGCAAGCTGGTGTCCGC+AGG + chr7_3:29257728-29257747 Msa1099940:CDS 55.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 29256095 29258109 29256095 ID=Msa1099940;Name=Msa1099940
chr7_3 mRNA 29256095 29258109 29256095 ID=Msa1099940-mRNA-1;Parent=Msa1099940;Name=Msa1099940-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|3|0|431
chr7_3 exon 29256095 29256617 29256095 ID=Msa1099940-mRNA-1:exon:6160;Parent=Msa1099940-mRNA-1
chr7_3 exon 29257132 29257278 29257132 ID=Msa1099940-mRNA-1:exon:6161;Parent=Msa1099940-mRNA-1
chr7_3 exon 29257484 29258109 29257484 ID=Msa1099940-mRNA-1:exon:6162;Parent=Msa1099940-mRNA-1
chr7_3 CDS 29256095 29256617 29256095 ID=Msa1099940-mRNA-1:cds;Parent=Msa1099940-mRNA-1
chr7_3 CDS 29257132 29257278 29257132 ID=Msa1099940-mRNA-1:cds;Parent=Msa1099940-mRNA-1
chr7_3 CDS 29257484 29258109 29257484 ID=Msa1099940-mRNA-1:cds;Parent=Msa1099940-mRNA-1
Gene Sequence

>Msa1099940

ATGAGTTACATTGTTAATAAAAAGCCACATGCTGTGTTGATTCCATATCCTCTTCAAGGGCATATAAATCCACTGCTAAAACTAGCAAAACTTCTTCATATTAAAGGCTTTCACATAACCTTTGTCAATACAGAATACAATCACAACCGTTTGCTTAAATCAAGAGGTTCTAATTCTCTTGATGGTTTCACCGATTTTGTCTTTGAGACCATCCAAGATGGTCTAACTCCAATGGAAGGTAATGGTGATGTTAGTCAAGACTTGGCATCTCTTTCTCAATCAGTTAGTAAGAACTTCATCAAACCCTTTGGTGAACTTCTTGCTAGACTTCATGACTCTGCCGATGCTGGTCTTATTCCACCGGTTACTTGCTTAGTTTCTGATTGTTACATGCCATTTACCATACAAGTTGCTGAAGAGAATGCACTCCCAATCCTTCTCTTTTCACCAACTAGTGCATGTAACTTCTTAACTACTTTCCACTTTCGTACAATGTTTGACAAAGGTCTAATACCGCTCAAAGGATTGCAGAACTTTCGACTGAAGGATCTACCTGACGTAATAAGGGTTGCAGATCGTAAAGATCCCATTTTAGAATTTGTCATTGAAGTGGGAGATAGCTTTCACAAAGCCTCTGCTATTATCTTTAACACTTATGATGAACTTGAGAGTTCCAATCTTTGGAAAGAAGATACCAAGTGTCTTGAATGGCTTGAATCAAAGGAACCTGAGTCTGTTGTTTATGTAAGTTTTGGCAGCATTACAGTTATGACTCCAGAGCAACTATTAGAATTTGCTTGGGGTCTGGCCAATAGCAAGAAACCATTTTTGTGGATCATTAGGCATGATCTTGTCATTGGCGGCTCCTTTATTATGTCATCTGAGTTTGAGAAAGAGATTTCAGATAGAGGTCTAATTGCAAGCTGGTGTCCGCAGGAGCAAGTATTGAACCACCCTTCAATTGGTGGATTCTTGTCTCACTGTGGATGGAACTCAACCGTTGAAAGCGTACTTGCTGGAGTGCCAATGTTGTGTTGGCCATTCTATGGTGATCAACCAATAAACTGTAGATATATCTGCAATATATGGGAGATTGGAATCGAAATCGATACTAATGTGAAGAGAGAGGAGGTCGAGAAGCTGATCAATGAATTGATGGTAGGGGATAAAGGAAAGAAGATGAGGCAAAATGCCGTAGAGTTAAGGAAGAAAGCAGAAGAGAACACCAGTATCGGTGGTTATTCATACATGAACTTGGACAAGGTTATTAAGGAGGTCTTGCTTAAAATATATTAG

Protein sequence

>Msa1099940

MSYIVNKKPHAVLIPYPLQGHINPLLKLAKLLHIKGFHITFVNTEYNHNRLLKSRGSNSLDGFTDFVFETIQDGLTPMEGNGDVSQDLASLSQSVSKNFIKPFGELLARLHDSADAGLIPPVTCLVSDCYMPFTIQVAEENALPILLFSPTSACNFLTTFHFRTMFDKGLIPLKGLQNFRLKDLPDVIRVADRKDPILEFVIEVGDSFHKASAIIFNTYDELESSNLWKEDTKCLEWLESKEPESVVYVSFGSITVMTPEQLLEFAWGLANSKKPFLWIIRHDLVIGGSFIMSSEFEKEISDRGLIASWCPQEQVLNHPSIGGFLSHCGWNSTVESVLAGVPMLCWPFYGDQPINCRYICNIWEIGIEIDTNVKREEVEKLINELMVGDKGKKMRQNAVELRKKAEENTSIGGYSYMNLDKVIKEVLLKIY*