Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062440 | sp|Q700D9|MYBF_ARATH | 72.603 | 73 | 15 | 1 | 1 | 68 | 1 | 73 | 2.56e-30 | 109 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062440 | A0A2Z6NR42 | 98.529 | 68 | 1 | 0 | 1 | 68 | 1 | 68 | 5.92e-42 | 141 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0062440 | TF | GARP-G2-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002930 | Msa0062440 | 0.818844 | 1.585247e-52 | -8.615850e-47 |
| Msa0062440 | Msa0084500 | 0.805496 | 1.298303e-49 | -8.615850e-47 |
| Msa0062440 | Msa0106790 | 0.812562 | 3.983195e-51 | -8.615850e-47 |
| Msa0062440 | Msa0124130 | 0.803532 | 3.333246e-49 | -8.615850e-47 |
| Msa0062440 | Msa0149140 | 0.806224 | 9.127197e-50 | -8.615850e-47 |
| Msa0062440 | Msa0153420 | 0.816720 | 4.781025e-52 | -8.615850e-47 |
| Msa0062440 | Msa0322830 | 0.804248 | 2.365887e-49 | -8.615850e-47 |
| Msa0062440 | Msa0423100 | 0.808716 | 2.700909e-50 | -8.615850e-47 |
| Msa0062440 | Msa0469260 | 0.846424 | 2.191477e-59 | -8.615850e-47 |
| Msa0062440 | Msa0575740 | 0.810122 | 1.348641e-50 | -8.615850e-47 |
| Msa0062440 | Msa0786040 | 0.800892 | 1.164396e-48 | -8.615850e-47 |
| Msa0062440 | Msa0911990 | 0.817243 | 3.647798e-52 | -8.615850e-47 |
| Msa0062440 | Msa0999340 | 0.802110 | 6.554617e-49 | -8.615850e-47 |
| Msa0062440 | Msa0999350 | 0.806002 | 1.016165e-49 | -8.615850e-47 |
| Msa0062440 | Msa1007860 | 0.801167 | 1.022968e-48 | -8.615850e-47 |
| Msa0062440 | Msa1073340 | 0.802144 | 6.449509e-49 | -8.615850e-47 |
| Msa0062440 | Msa1100140 | 0.811510 | 6.754000e-51 | -8.615850e-47 |
| Msa0062440 | Msa1113850 | 0.800278 | 1.553839e-48 | -8.615850e-47 |
| Msa0062440 | Msa1271260 | 0.811000 | 8.713061e-51 | -8.615850e-47 |
| Msa0062440 | Msa1420060 | 0.813434 | 2.565106e-51 | -8.615850e-47 |
| Msa0062440 | Msa1435480 | 0.820293 | 7.405317e-53 | -8.615850e-47 |
| Msa0062440 | Msa1458910 | 0.800839 | 1.193794e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062440 | MtrunA17_Chr1g0162931 | 100.000 | 68 | 0 | 0 | 1 | 68 | 1 | 68 | 8.16e-45 | 144 |
| Msa0062440 | MtrunA17_Chr1g0210911 | 87.143 | 70 | 6 | 1 | 2 | 68 | 3 | 72 | 9.99e-39 | 130 |
| Msa0062440 | MtrunA17_Chr2g0288601 | 74.603 | 63 | 16 | 0 | 6 | 68 | 59 | 121 | 6.23e-31 | 104 |
| Msa0062440 | MtrunA17_Chr2g0320231 | 73.438 | 64 | 17 | 0 | 5 | 68 | 84 | 147 | 1.95e-28 | 103 |
| Msa0062440 | MtrunA17_Chr8g0379121 | 71.429 | 63 | 18 | 0 | 6 | 68 | 99 | 161 | 2.96e-28 | 103 |
| Msa0062440 | MtrunA17_Chr7g0243081 | 65.152 | 66 | 23 | 0 | 3 | 68 | 56 | 121 | 5.42e-28 | 102 |
| Msa0062440 | MtrunA17_Chr2g0283951 | 73.016 | 63 | 17 | 0 | 6 | 68 | 77 | 139 | 6.28e-27 | 99.8 |
| Msa0062440 | MtrunA17_Chr3g0095611 | 64.407 | 59 | 21 | 0 | 10 | 68 | 11 | 69 | 9.45e-23 | 85.9 |
| Msa0062440 | MtrunA17_Chr6g0479431 | 67.308 | 52 | 17 | 0 | 17 | 68 | 201 | 252 | 4.67e-21 | 84.0 |
| Msa0062440 | MtrunA17_Chr8g0366281 | 69.231 | 52 | 16 | 0 | 17 | 68 | 172 | 223 | 6.33e-21 | 83.6 |
| Msa0062440 | MtrunA17_Chr5g0410741 | 67.308 | 52 | 17 | 0 | 17 | 68 | 218 | 269 | 4.06e-20 | 81.6 |
| Msa0062440 | MtrunA17_Chr3g0109981 | 67.308 | 52 | 17 | 0 | 17 | 68 | 273 | 324 | 7.27e-20 | 80.9 |
| Msa0062440 | MtrunA17_Chr1g0190301 | 72.000 | 50 | 14 | 0 | 19 | 68 | 176 | 225 | 1.15e-19 | 80.1 |
| Msa0062440 | MtrunA17_Chr7g0274471 | 70.000 | 50 | 15 | 0 | 19 | 68 | 219 | 268 | 1.95e-19 | 79.7 |
| Msa0062440 | MtrunA17_Chr7g0261911 | 70.000 | 50 | 15 | 0 | 19 | 68 | 263 | 312 | 3.75e-19 | 79.0 |
| Msa0062440 | MtrunA17_Chr1g0154261 | 61.017 | 59 | 21 | 1 | 10 | 68 | 120 | 176 | 4.06e-19 | 77.8 |
| Msa0062440 | MtrunA17_Chr5g0409731 | 56.250 | 64 | 28 | 0 | 5 | 68 | 12 | 75 | 3.24e-18 | 75.5 |
| Msa0062440 | MtrunA17_Chr6g0461641 | 62.000 | 50 | 19 | 0 | 19 | 68 | 43 | 92 | 6.01e-17 | 72.8 |
| Msa0062440 | MtrunA17_Chr5g0417521 | 60.000 | 50 | 20 | 0 | 19 | 68 | 16 | 65 | 1.01e-16 | 72.0 |
| Msa0062440 | MtrunA17_Chr8g0356501 | 64.000 | 50 | 18 | 0 | 19 | 68 | 38 | 87 | 1.26e-16 | 71.6 |
| Msa0062440 | MtrunA17_Chr7g0258551 | 58.182 | 55 | 23 | 0 | 14 | 68 | 208 | 262 | 5.85e-16 | 70.1 |
| Msa0062440 | MtrunA17_Chr2g0321461 | 60.000 | 50 | 20 | 0 | 19 | 68 | 46 | 95 | 6.29e-16 | 69.7 |
| Msa0062440 | MtrunA17_Chr1g0175091 | 60.377 | 53 | 21 | 0 | 16 | 68 | 256 | 308 | 6.32e-16 | 69.7 |
| Msa0062440 | MtrunA17_Chr2g0310011 | 64.000 | 50 | 18 | 0 | 19 | 68 | 36 | 85 | 7.17e-16 | 69.7 |
| Msa0062440 | MtrunA17_Chr1g0197171 | 62.000 | 50 | 19 | 0 | 19 | 68 | 45 | 94 | 9.71e-16 | 68.9 |
| Msa0062440 | MtrunA17_Chr2g0290991 | 62.000 | 50 | 19 | 0 | 19 | 68 | 40 | 89 | 1.13e-15 | 68.9 |
| Msa0062440 | MtrunA17_Chr2g0291021 | 67.347 | 49 | 16 | 0 | 20 | 68 | 51 | 99 | 4.38e-15 | 67.4 |
| Msa0062440 | MtrunA17_Chr7g0254981 | 67.347 | 49 | 16 | 0 | 20 | 68 | 52 | 100 | 4.93e-15 | 66.6 |
| Msa0062440 | MtrunA17_Chr1g0175081 | 44.118 | 68 | 38 | 0 | 1 | 68 | 5 | 72 | 9.74e-15 | 62.8 |
| Msa0062440 | MtrunA17_Chr4g0042451 | 58.000 | 50 | 21 | 0 | 19 | 68 | 18 | 67 | 9.90e-15 | 66.2 |
| Msa0062440 | MtrunA17_Chr4g0009901 | 47.692 | 65 | 32 | 2 | 5 | 68 | 154 | 217 | 7.12e-14 | 63.5 |
| Msa0062440 | MtrunA17_Chr4g0045361 | 63.043 | 46 | 17 | 0 | 23 | 68 | 279 | 324 | 7.30e-14 | 63.9 |
| Msa0062440 | MtrunA17_Chr1g0175071 | 59.184 | 49 | 20 | 0 | 20 | 68 | 179 | 227 | 1.75e-13 | 62.8 |
| Msa0062440 | MtrunA17_Chr4g0062921 | 60.870 | 46 | 18 | 0 | 23 | 68 | 240 | 285 | 1.97e-12 | 60.1 |
| Msa0062440 | MtrunA17_Chr7g0258531 | 53.061 | 49 | 23 | 0 | 20 | 68 | 215 | 263 | 3.14e-12 | 59.3 |
| Msa0062440 | MtrunA17_Chr2g0304841 | 50.000 | 52 | 25 | 1 | 17 | 68 | 212 | 262 | 7.07e-12 | 58.5 |
| Msa0062440 | MtrunA17_Chr4g0009991 | 54.167 | 48 | 21 | 1 | 21 | 68 | 70 | 116 | 9.90e-12 | 55.5 |
| Msa0062440 | MtrunA17_Chr4g0009981 | 50.943 | 53 | 25 | 1 | 16 | 68 | 114 | 165 | 1.68e-11 | 57.0 |
| Msa0062440 | MtrunA17_Chr7g0255711 | 55.769 | 52 | 22 | 1 | 17 | 68 | 90 | 140 | 2.13e-11 | 57.0 |
| Msa0062440 | MtrunA17_Chr4g0074421 | 55.769 | 52 | 22 | 1 | 17 | 68 | 132 | 182 | 3.19e-11 | 55.5 |
| Msa0062440 | MtrunA17_Chr5g0422621 | 54.348 | 46 | 21 | 0 | 23 | 68 | 203 | 248 | 3.24e-11 | 56.6 |
| Msa0062440 | MtrunA17_Chr4g0031961 | 48.387 | 62 | 31 | 1 | 7 | 68 | 120 | 180 | 4.37e-11 | 56.2 |
| Msa0062440 | MtrunA17_Chr1g0161431 | 52.830 | 53 | 24 | 1 | 16 | 68 | 198 | 249 | 4.98e-11 | 56.2 |
| Msa0062440 | MtrunA17_Chr7g0242521 | 55.769 | 52 | 20 | 1 | 20 | 68 | 15 | 66 | 5.54e-11 | 55.5 |
| Msa0062440 | MtrunA17_Chr4g0067981 | 53.846 | 52 | 23 | 1 | 17 | 68 | 214 | 264 | 6.32e-11 | 55.8 |
| Msa0062440 | MtrunA17_Chr5g0402631 | 52.830 | 53 | 25 | 0 | 16 | 68 | 212 | 264 | 7.38e-11 | 55.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0062440 | AT1G14600.1 | 72.603 | 73 | 15 | 1 | 1 | 68 | 1 | 73 | 2.60e-31 | 109 |
| Msa0062440 | AT2G02060.2 | 81.356 | 59 | 11 | 0 | 10 | 68 | 21 | 79 | 3.65e-30 | 106 |
| Msa0062440 | AT2G02060.1 | 81.356 | 59 | 11 | 0 | 10 | 68 | 21 | 79 | 3.65e-30 | 106 |
| Msa0062440 | AT4G04605.1 | 75.000 | 60 | 15 | 0 | 9 | 68 | 5 | 64 | 2.11e-28 | 101 |
| Msa0062440 | AT2G40260.1 | 75.410 | 61 | 15 | 0 | 8 | 68 | 72 | 132 | 1.38e-26 | 99.8 |
| Msa0062440 | AT2G38300.1 | 72.881 | 59 | 16 | 0 | 10 | 68 | 46 | 104 | 5.78e-25 | 94.4 |
| Msa0062440 | AT2G42660.1 | 67.797 | 59 | 19 | 0 | 10 | 68 | 42 | 100 | 6.87e-25 | 92.8 |
| Msa0062440 | AT4G04555.1 | 58.730 | 63 | 26 | 0 | 6 | 68 | 2 | 64 | 7.70e-22 | 81.3 |
| Msa0062440 | AT1G32240.2 | 67.308 | 52 | 17 | 0 | 17 | 68 | 212 | 263 | 3.54e-20 | 82.0 |
| Msa0062440 | AT1G32240.1 | 67.308 | 52 | 17 | 0 | 17 | 68 | 212 | 263 | 5.59e-20 | 81.6 |
| Msa0062440 | AT4G04580.1 | 58.333 | 60 | 25 | 0 | 9 | 68 | 5 | 64 | 1.46e-19 | 77.0 |
| Msa0062440 | AT5G16560.1 | 67.308 | 52 | 17 | 0 | 17 | 68 | 218 | 269 | 3.95e-19 | 79.3 |
| Msa0062440 | AT5G42630.2 | 63.462 | 52 | 19 | 0 | 17 | 68 | 104 | 155 | 4.72e-19 | 77.0 |
| Msa0062440 | AT4G17695.1 | 63.462 | 52 | 19 | 0 | 17 | 68 | 163 | 214 | 5.21e-19 | 78.2 |
| Msa0062440 | AT5G42630.1 | 63.462 | 52 | 19 | 0 | 17 | 68 | 104 | 155 | 1.42e-18 | 76.6 |
| Msa0062440 | AT4G28610.1 | 67.347 | 49 | 16 | 0 | 20 | 68 | 227 | 275 | 8.58e-18 | 75.5 |
| Msa0062440 | AT3G04450.3 | 65.306 | 49 | 17 | 0 | 20 | 68 | 240 | 288 | 2.87e-17 | 73.6 |
| Msa0062440 | AT5G29000.4 | 65.306 | 49 | 17 | 0 | 20 | 68 | 233 | 281 | 3.76e-17 | 73.2 |
| Msa0062440 | AT5G45580.2 | 62.963 | 54 | 20 | 0 | 15 | 68 | 20 | 73 | 8.52e-17 | 72.0 |
| Msa0062440 | AT5G45580.1 | 62.963 | 54 | 20 | 0 | 15 | 68 | 4 | 57 | 9.54e-17 | 71.6 |
| Msa0062440 | AT2G20400.1 | 67.347 | 49 | 16 | 0 | 20 | 68 | 233 | 281 | 1.01e-16 | 72.4 |
| Msa0062440 | AT2G20400.2 | 67.347 | 49 | 16 | 0 | 20 | 68 | 233 | 281 | 1.01e-16 | 72.4 |
| Msa0062440 | AT3G04450.1 | 65.306 | 49 | 17 | 0 | 20 | 68 | 240 | 288 | 1.20e-16 | 72.4 |
| Msa0062440 | AT5G29000.2 | 65.306 | 49 | 17 | 0 | 20 | 68 | 233 | 281 | 1.52e-16 | 72.0 |
| Msa0062440 | AT5G29000.1 | 65.306 | 49 | 17 | 0 | 20 | 68 | 190 | 238 | 1.76e-16 | 71.6 |
| Msa0062440 | AT5G29000.3 | 65.306 | 49 | 17 | 0 | 20 | 68 | 190 | 238 | 1.76e-16 | 71.6 |
| Msa0062440 | AT3G04450.4 | 65.306 | 49 | 17 | 0 | 20 | 68 | 200 | 248 | 1.81e-16 | 71.6 |
| Msa0062440 | AT3G04450.2 | 65.306 | 49 | 17 | 0 | 20 | 68 | 200 | 248 | 1.81e-16 | 71.6 |
| Msa0062440 | AT3G12730.1 | 64.000 | 50 | 18 | 0 | 19 | 68 | 24 | 73 | 2.15e-16 | 70.1 |
| Msa0062440 | AT4G13640.1 | 64.000 | 50 | 18 | 0 | 19 | 68 | 38 | 87 | 2.40e-16 | 70.9 |
| Msa0062440 | AT4G13640.2 | 64.000 | 50 | 18 | 0 | 19 | 68 | 38 | 87 | 2.56e-16 | 70.9 |
| Msa0062440 | AT3G24120.2 | 64.000 | 50 | 18 | 0 | 19 | 68 | 42 | 91 | 2.90e-16 | 70.5 |
| Msa0062440 | AT3G24120.1 | 64.000 | 50 | 18 | 0 | 19 | 68 | 42 | 91 | 2.92e-16 | 70.5 |
| Msa0062440 | AT2G06020.1 | 55.357 | 56 | 25 | 0 | 13 | 68 | 81 | 136 | 3.39e-16 | 70.5 |
| Msa0062440 | AT1G79430.2 | 64.000 | 50 | 18 | 0 | 19 | 68 | 35 | 84 | 5.31e-16 | 70.5 |
| Msa0062440 | AT3G13040.3 | 67.347 | 49 | 16 | 0 | 20 | 68 | 243 | 291 | 5.88e-16 | 70.5 |
| Msa0062440 | AT3G13040.1 | 67.347 | 49 | 16 | 0 | 20 | 68 | 243 | 291 | 5.88e-16 | 70.5 |
| Msa0062440 | AT3G13040.2 | 67.347 | 49 | 16 | 0 | 20 | 68 | 243 | 291 | 5.88e-16 | 70.5 |
| Msa0062440 | AT5G18240.2 | 58.000 | 50 | 21 | 0 | 19 | 68 | 46 | 95 | 1.70e-15 | 68.9 |
| Msa0062440 | AT5G18240.3 | 58.000 | 50 | 21 | 0 | 19 | 68 | 46 | 95 | 1.70e-15 | 68.9 |
| Msa0062440 | AT3G04030.1 | 56.000 | 50 | 22 | 0 | 19 | 68 | 46 | 95 | 1.93e-15 | 68.9 |
| Msa0062440 | AT5G18240.5 | 58.000 | 50 | 21 | 0 | 19 | 68 | 46 | 95 | 2.05e-15 | 68.9 |
| Msa0062440 | AT5G18240.1 | 58.000 | 50 | 21 | 0 | 19 | 68 | 46 | 95 | 2.27e-15 | 68.6 |
| Msa0062440 | AT5G18240.4 | 58.000 | 50 | 21 | 0 | 19 | 68 | 46 | 95 | 2.27e-15 | 68.6 |
| Msa0062440 | AT3G04030.3 | 56.000 | 50 | 22 | 0 | 19 | 68 | 46 | 95 | 2.62e-15 | 68.6 |
| Msa0062440 | AT2G01060.1 | 67.347 | 49 | 16 | 0 | 20 | 68 | 17 | 65 | 4.40e-15 | 67.4 |
| Msa0062440 | AT5G06800.3 | 61.224 | 49 | 19 | 0 | 20 | 68 | 194 | 242 | 1.69e-14 | 65.9 |
| Msa0062440 | AT1G69580.1 | 54.000 | 50 | 23 | 0 | 19 | 68 | 35 | 84 | 4.95e-14 | 64.7 |
| Msa0062440 | AT1G69580.2 | 54.000 | 50 | 23 | 0 | 19 | 68 | 35 | 84 | 4.97e-14 | 64.7 |
| Msa0062440 | AT5G06800.2 | 61.224 | 49 | 19 | 0 | 20 | 68 | 194 | 242 | 1.26e-13 | 63.9 |
| Msa0062440 | AT5G06800.1 | 61.224 | 49 | 19 | 0 | 20 | 68 | 194 | 242 | 1.48e-13 | 63.5 |
| Msa0062440 | AT4G37180.3 | 54.386 | 57 | 26 | 0 | 12 | 68 | 204 | 260 | 3.95e-13 | 62.0 |
| Msa0062440 | AT4G37180.1 | 55.357 | 56 | 25 | 0 | 13 | 68 | 205 | 260 | 4.01e-13 | 62.4 |
| Msa0062440 | AT4G37180.2 | 55.357 | 56 | 25 | 0 | 13 | 68 | 212 | 267 | 4.80e-13 | 62.0 |
| Msa0062440 | AT2G03500.1 | 60.870 | 46 | 18 | 0 | 23 | 68 | 238 | 283 | 1.24e-12 | 60.8 |
| Msa0062440 | AT3G04030.2 | 52.000 | 50 | 23 | 1 | 19 | 68 | 46 | 94 | 1.64e-12 | 60.5 |
| Msa0062440 | AT1G49190.1 | 47.541 | 61 | 29 | 1 | 11 | 68 | 208 | 268 | 2.19e-12 | 60.1 |
| Msa0062440 | AT1G49190.2 | 47.541 | 61 | 29 | 1 | 11 | 68 | 413 | 473 | 2.25e-12 | 60.1 |
| Msa0062440 | AT1G25550.1 | 58.696 | 46 | 19 | 0 | 23 | 68 | 214 | 259 | 2.78e-12 | 60.1 |
| Msa0062440 | AT3G62670.1 | 49.123 | 57 | 25 | 1 | 16 | 68 | 209 | 265 | 3.05e-12 | 59.7 |
| Msa0062440 | AT5G59570.2 | 54.717 | 53 | 23 | 1 | 16 | 68 | 139 | 190 | 4.26e-12 | 59.3 |
| Msa0062440 | AT5G59570.1 | 54.717 | 53 | 23 | 1 | 16 | 68 | 139 | 190 | 4.26e-12 | 59.3 |
| Msa0062440 | AT5G44190.1 | 55.769 | 52 | 22 | 1 | 17 | 68 | 146 | 196 | 4.27e-12 | 59.3 |
| Msa0062440 | AT5G44190.2 | 55.769 | 52 | 22 | 1 | 17 | 68 | 146 | 196 | 4.61e-12 | 59.3 |
| Msa0062440 | AT1G25550.2 | 50.000 | 58 | 29 | 0 | 11 | 68 | 202 | 259 | 6.75e-12 | 58.5 |
| Msa0062440 | AT3G10760.1 | 55.769 | 52 | 22 | 1 | 17 | 68 | 104 | 154 | 8.88e-12 | 58.5 |
| Msa0062440 | AT3G46640.2 | 53.846 | 52 | 23 | 1 | 17 | 68 | 143 | 193 | 3.02e-11 | 57.0 |
| Msa0062440 | AT3G46640.1 | 53.846 | 52 | 23 | 1 | 17 | 68 | 143 | 193 | 3.02e-11 | 57.0 |
| Msa0062440 | AT5G05090.1 | 55.769 | 52 | 22 | 1 | 17 | 68 | 80 | 130 | 4.01e-11 | 56.2 |
| Msa0062440 | AT3G46640.3 | 53.846 | 52 | 23 | 1 | 17 | 68 | 143 | 193 | 4.68e-11 | 56.6 |
| Msa0062440 | AT2G40970.1 | 55.769 | 52 | 22 | 1 | 17 | 68 | 104 | 154 | 5.26e-11 | 55.8 |
| Msa0062440 | AT1G68670.1 | 56.522 | 46 | 20 | 0 | 23 | 68 | 220 | 265 | 9.85e-11 | 55.5 |
Find 19 sgRNAs with CRISPR-Local
Find 22 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAGTTGATGGATGTTAA+AGG | 0.259007 | 1_2:-21895184 | Msa0062440:CDS |
| TAAGCTTGTTCTTCAGTTGA+TGG | 0.287799 | 1_2:-21895194 | Msa0062440:CDS |
| CTCATTCTTTCAAATCCAAA+AGG | 0.369949 | 1_2:+21895469 | None:intergenic |
| ACATGTTAAGAGCCATTTGC+AGG | 0.373744 | 1_2:-21895149 | None:intergenic |
| GTTTATGCCATTGAAACTCT+TGG | 0.378805 | 1_2:-21895358 | Msa0062440:CDS |
| TTCAGTTGATGGATGTTAAA+GGG | 0.399431 | 1_2:-21895183 | Msa0062440:CDS |
| ACAAAGCAACGATGAAGTTC+AGG | 0.401903 | 1_2:+21895379 | None:intergenic |
| CAAAGGTTCCTCGTTTAAGA+TGG | 0.432536 | 1_2:-21895405 | Msa0062440:CDS |
| ATGACCACCAAGAGTTTCAA+TGG | 0.434104 | 1_2:+21895351 | None:intergenic |
| TATCAAAATCAACCTGCAAA+TGG | 0.495949 | 1_2:+21895137 | None:intergenic |
| ATCAACTGAAGAACAAGCTT+AGG | 0.508937 | 1_2:+21895196 | None:intergenic |
| TCATTCTTTCAAATCCAAAA+GGG | 0.518435 | 1_2:+21895470 | None:intergenic |
| ATGAGTAGTTGTGGAAGGGA+AGG | 0.528216 | 1_2:-21895451 | Msa0062440:CDS |
| AAAGAATGAGTAGTTGTGGA+AGG | 0.546541 | 1_2:-21895456 | Msa0062440:exon |
| TTTGAAAGAATGAGTAGTTG+TGG | 0.567741 | 1_2:-21895460 | Msa0062440:exon |
| AAGAATGAGTAGTTGTGGAA+GGG | 0.598417 | 1_2:-21895455 | Msa0062440:exon |
| GAGACAATATGTAAGATCAA+AGG | 0.602756 | 1_2:-21895422 | Msa0062440:CDS |
| TATGCCATTGAAACTCTTGG+TGG | 0.619663 | 1_2:-21895355 | Msa0062440:CDS |
| TCAGGTGTCCATCTTAAACG+AGG | 0.752182 | 1_2:+21895397 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCATTCATTTCTATTACTA+TGG | - | chr1_2:21895366-21895385 | Msa0062440:CDS | 20.0% |
| ! | TCATTCTTTCAAATCCAAAA+GGG | + | chr1_2:21895183-21895202 | None:intergenic | 25.0% |
| !!! | TTTTTTTCCTTCATTTGTAG+AGG | - | chr1_2:21895426-21895445 | Msa0062440:CDS | 25.0% |
| CTCATTCTTTCAAATCCAAA+AGG | + | chr1_2:21895184-21895203 | None:intergenic | 30.0% | |
| TTTGAAAGAATGAGTAGTTG+TGG | - | chr1_2:21895190-21895209 | Msa0062440:CDS | 30.0% | |
| GAGACAATATGTAAGATCAA+AGG | - | chr1_2:21895228-21895247 | Msa0062440:intron | 30.0% | |
| !! | TTCAGTTGATGGATGTTAAA+GGG | - | chr1_2:21895467-21895486 | Msa0062440:exon | 30.0% |
| !!! | GTGTTTTGAGGGTTTTTTTG+AGG | - | chr1_2:21895156-21895175 | Msa0062440:CDS | 35.0% |
| AAAGAATGAGTAGTTGTGGA+AGG | - | chr1_2:21895194-21895213 | Msa0062440:CDS | 35.0% | |
| AAGAATGAGTAGTTGTGGAA+GGG | - | chr1_2:21895195-21895214 | Msa0062440:CDS | 35.0% | |
| GTTTATGCCATTGAAACTCT+TGG | - | chr1_2:21895292-21895311 | Msa0062440:intron | 35.0% | |
| ATCAACTGAAGAACAAGCTT+AGG | + | chr1_2:21895457-21895476 | None:intergenic | 35.0% | |
| ! | TAAGCTTGTTCTTCAGTTGA+TGG | - | chr1_2:21895456-21895475 | Msa0062440:exon | 35.0% |
| !! | CTTCAGTTGATGGATGTTAA+AGG | - | chr1_2:21895466-21895485 | Msa0062440:exon | 35.0% |
| !!! | GGTTTTTTTGAGGACCCTTT+TGG | - | chr1_2:21895166-21895185 | Msa0062440:CDS | 40.0% |
| CAAAGGTTCCTCGTTTAAGA+TGG | - | chr1_2:21895245-21895264 | Msa0062440:intron | 40.0% | |
| ACAAAGCAACGATGAAGTTC+AGG | + | chr1_2:21895274-21895293 | None:intergenic | 40.0% | |
| TATGCCATTGAAACTCTTGG+TGG | - | chr1_2:21895295-21895314 | Msa0062440:intron | 40.0% | |
| ATGACCACCAAGAGTTTCAA+TGG | + | chr1_2:21895302-21895321 | None:intergenic | 40.0% | |
| ATGAGTAGTTGTGGAAGGGA+AGG | - | chr1_2:21895199-21895218 | Msa0062440:CDS | 45.0% | |
| TCAGGTGTCCATCTTAAACG+AGG | + | chr1_2:21895256-21895275 | None:intergenic | 45.0% | |
| GGAGTAGCCTCTACAAATGA+AGG | + | chr1_2:21895436-21895455 | None:intergenic | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 21895150 | 21895522 | 21895150 | ID=Msa0062440;Name=Msa0062440 |
| chr1_2 | mRNA | 21895150 | 21895522 | 21895150 | ID=Msa0062440-mRNA-1;Parent=Msa0062440;Name=Msa0062440-mRNA-1;_AED=0.00;_eAED=0.00;_QI=49|1|1|1|1|1|2|0|68 |
| chr1_2 | exon | 21895150 | 21895226 | 21895150 | ID=Msa0062440-mRNA-1:exon:8127;Parent=Msa0062440-mRNA-1 |
| chr1_2 | exon | 21895347 | 21895522 | 21895347 | ID=Msa0062440-mRNA-1:exon:8126;Parent=Msa0062440-mRNA-1 |
| chr1_2 | five_prime_UTR | 21895474 | 21895522 | 21895474 | ID=Msa0062440-mRNA-1:five_prime_utr;Parent=Msa0062440-mRNA-1 |
| chr1_2 | CDS | 21895347 | 21895473 | 21895347 | ID=Msa0062440-mRNA-1:cds;Parent=Msa0062440-mRNA-1 |
| chr1_2 | CDS | 21895150 | 21895226 | 21895150 | ID=Msa0062440-mRNA-1:cds;Parent=Msa0062440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
