AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1160560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1160560 MtrunA17_Chr7g0256211 99.558 452 2 0 1 452 1 452 0.0 924
Msa1160560 MtrunA17_Chr8g0353501 67.591 469 132 9 1 452 1 466 0.0 577
Msa1160560 MtrunA17_Chr5g0422771 52.106 451 177 10 31 452 24 464 3.59e-144 420
Msa1160560 MtrunA17_Chr1g0210151 62.739 314 101 4 144 452 38 340 1.86e-131 383
Msa1160560 MtrunA17_Chr7g0258321 58.232 328 124 5 134 452 140 463 2.12e-128 379
Msa1160560 MtrunA17_Chr1g0174701 61.688 308 102 6 156 452 204 506 4.58e-127 377
Msa1160560 MtrunA17_Chr2g0321431 61.458 288 101 2 165 452 192 469 9.50e-122 363
Msa1160560 MtrunA17_Chr3g0124601 59.000 300 110 3 158 452 70 361 8.81e-114 338
Msa1160560 MtrunA17_Chr4g0026401 49.025 359 160 5 101 452 119 461 1.47e-110 335
Msa1160560 MtrunA17_Chr3g0115371 47.076 342 156 5 127 450 13 347 4.75e-96 293
Msa1160560 MtrunA17_Chr8g0382861 51.351 296 130 4 162 452 70 356 1.21e-93 287
Msa1160560 MtrunA17_Chr5g0424861 51.389 288 128 4 167 449 67 347 1.86e-89 276
Msa1160560 MtrunA17_Chr3g0093451 56.061 198 70 4 133 319 18 209 1.13e-71 225
Msa1160560 MtrunA17_Chr5g0424851 46.818 220 109 3 231 449 10 222 3.58e-58 197
Msa1160560 MtrunA17_Chr5g0424851 43.689 206 109 2 235 440 228 426 7.93e-53 183
Msa1160560 MtrunA17_Chr1g0196951 32.367 207 110 5 244 445 59 240 4.99e-21 91.7
Msa1160560 MtrunA17_Chr8g0384821 27.126 247 140 5 228 440 8 248 1.68e-16 79.3
Msa1160560 MtrunA17_Chr2g0315631 22.535 213 124 3 239 431 8 199 7.71e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1160560 AT3G12250.6 73.414 331 77 4 132 452 1 330 2.21e-168 476
Msa1160560 AT3G12250.2 73.414 331 77 4 132 452 1 330 2.21e-168 476
Msa1160560 AT3G12250.7 73.414 331 77 4 132 452 1 330 2.21e-168 476
Msa1160560 AT3G12250.1 73.414 331 77 4 132 452 1 330 2.21e-168 476
Msa1160560 AT5G06950.2 78.523 298 63 1 155 452 34 330 1.55e-166 472
Msa1160560 AT5G06950.4 78.523 298 63 1 155 452 34 330 1.55e-166 472
Msa1160560 AT5G06950.1 78.523 298 63 1 155 452 34 330 1.55e-166 472
Msa1160560 AT5G06950.5 78.523 298 63 1 155 452 34 330 1.55e-166 472
Msa1160560 AT5G06950.3 78.523 298 63 1 155 452 34 330 1.55e-166 472
Msa1160560 AT3G12250.5 77.852 298 65 1 155 452 7 303 1.61e-166 471
Msa1160560 AT3G12250.3 77.852 298 65 1 155 452 28 324 4.12e-166 471
Msa1160560 AT3G12250.4 77.852 298 65 1 155 452 59 355 6.01e-165 469
Msa1160560 AT5G06960.2 73.292 322 77 3 139 452 10 330 5.05e-155 442
Msa1160560 AT5G06960.1 73.292 322 77 3 139 452 10 330 5.05e-155 442
Msa1160560 AT5G06960.3 77.083 288 65 1 165 452 24 310 5.15e-155 442
Msa1160560 AT1G68640.1 70.103 291 84 2 164 452 163 452 8.84e-138 403
Msa1160560 AT1G08320.2 58.104 327 124 4 129 452 13 329 7.52e-128 375
Msa1160560 AT1G08320.5 58.104 327 124 4 129 452 13 329 7.52e-128 375
Msa1160560 AT1G08320.1 58.104 327 124 4 129 452 137 453 3.85e-126 375
Msa1160560 AT1G08320.4 58.104 327 124 4 129 452 137 453 3.85e-126 375
Msa1160560 AT1G08320.3 58.104 327 124 4 129 452 137 453 3.85e-126 375
Msa1160560 AT5G06839.2 56.954 302 117 3 164 452 115 416 4.77e-117 349
Msa1160560 AT5G06839.1 57.143 301 117 3 164 452 115 415 1.68e-116 348
Msa1160560 AT5G06839.3 57.143 301 117 3 164 452 158 458 2.08e-116 349
Msa1160560 AT5G10030.5 54.688 320 132 4 138 452 51 362 4.47e-113 337
Msa1160560 AT5G10030.3 54.688 320 132 4 138 452 51 362 4.47e-113 337
Msa1160560 AT5G10030.1 54.688 320 132 4 138 452 51 362 4.47e-113 337
Msa1160560 AT5G10030.4 54.688 320 132 4 138 452 51 362 4.47e-113 337
Msa1160560 AT5G10030.2 54.688 320 132 4 138 452 51 362 4.47e-113 337
Msa1160560 AT1G22070.1 56.393 305 124 3 152 452 83 382 5.38e-112 335
Msa1160560 AT5G65210.6 55.667 300 120 3 158 452 5 296 3.19e-109 325
Msa1160560 AT5G65210.5 50.716 349 141 5 127 452 26 366 3.88e-109 327
Msa1160560 AT5G65210.7 50.716 349 141 5 127 452 26 366 3.88e-109 327
Msa1160560 AT5G65210.3 50.716 349 141 5 127 452 26 366 3.88e-109 327
Msa1160560 AT5G65210.1 50.716 349 141 5 127 452 26 366 3.88e-109 327
Msa1160560 AT5G65210.2 50.716 349 141 5 127 452 26 366 3.88e-109 327
Msa1160560 AT5G65210.4 50.716 349 141 5 127 452 26 366 3.88e-109 327
Msa1160560 AT1G77920.1 49.046 367 155 6 88 452 30 366 5.41e-108 324
Msa1160560 AT1G58330.1 26.244 221 145 5 234 442 9 223 6.57e-15 74.3
Msa1160560 AT3G14880.2 24.675 231 131 5 227 431 1 214 2.00e-14 73.2
Msa1160560 AT3G14880.1 23.950 238 131 5 227 431 1 221 2.82e-13 69.7

Find 157 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCTCTTGTTTCTTCTTTC+TGG -0.049806 7_4:+50549285 Msa1160560:five_prime_UTR
CCTTCTCGAATTTCTGATTT+TGG 0.114816 7_4:+50550685 Msa1160560:CDS
GTCATTTCTGAAACAAATTA+TGG 0.166302 7_4:-50554444 None:intergenic
AAGGCCTAGTTGTGGATTTA+AGG 0.176334 7_4:+50549733 Msa1160560:intron
ATCAACTGTTGTTCAGTTAA+AGG 0.191657 7_4:-50553116 None:intergenic
AAAAGACGCGCTGCCAAATT+TGG 0.207656 7_4:+50551320 Msa1160560:CDS
CCAGATGTTGAAGCCAAATT+TGG 0.211263 7_4:-50551333 None:intergenic
AGCCATTTGTCCCATGTAAT+TGG 0.245079 7_4:-50553276 None:intergenic
CCAAATTTGGCTTCAACATC+TGG 0.245789 7_4:+50551333 Msa1160560:CDS
ATCTCTTGTTTCTTCTTTCT+GGG 0.246404 7_4:+50549286 Msa1160560:five_prime_UTR
TCTGAAAGCATACAAATATA+TGG 0.259906 7_4:+50554385 Msa1160560:three_prime_UTR
CCCAACCCATCAGGTGCTTC+TGG 0.270597 7_4:+50553245 Msa1160560:CDS
TTAGGTGCTGATATTCAATT+TGG 0.276431 7_4:+50551126 Msa1160560:CDS
TGCATGAAGCTGGTGTCTTT+TGG 0.285414 7_4:+50553903 Msa1160560:three_prime_UTR
AACCTCTCTGCTGCAATTGC+TGG 0.307118 7_4:+50551276 Msa1160560:CDS
TTCAACTTTGTCACTTGCTT+AGG 0.309843 7_4:+50549239 Msa1160560:five_prime_UTR
GCTGTAGCTCTTGCTCTAGT+TGG 0.316242 7_4:-50551890 None:intergenic
AGAAACAAGAGATGGGAAAA+TGG 0.316723 7_4:-50549276 None:intergenic
ACAAGTCTTGTTATTGTTGT+TGG 0.319095 7_4:+50549208 Msa1160560:five_prime_UTR
GCAGCTTCTTGTAAGTCATT+TGG 0.321728 7_4:+50553091 Msa1160560:intron
GATGGTTAGAAGAGCATAAT+AGG 0.327313 7_4:+50552709 Msa1160560:CDS
GAGGATGGTTTCCTCTCTCT+TGG 0.334154 7_4:+50554181 Msa1160560:three_prime_UTR
CTGGCGGCCATCGTGAGAAT+TGG 0.336333 7_4:+50551352 Msa1160560:CDS
TATTGCAGCCCTTAGTTCAT+TGG 0.346864 7_4:-50552736 None:intergenic
TCATGTGGATTGGAGGCTTT+CGG 0.349268 7_4:+50552910 Msa1160560:CDS
TGGCGGCCATCGTGAGAATT+GGG 0.354181 7_4:+50551353 Msa1160560:CDS
GTGATAGAAATAGTTAGATT+TGG 0.357389 7_4:+50554477 Msa1160560:three_prime_UTR
GGAATATTTATTTCAAGTAC+TGG 0.364580 7_4:+50552046 Msa1160560:CDS
GAAAAGCCGACTGAGGAAAA+AGG 0.365804 7_4:+50551726 Msa1160560:CDS
CAAATTTACATGGAATTAGA+TGG 0.365828 7_4:-50549862 None:intergenic
TACCATTTCCACTCATTGAA+TGG 0.377090 7_4:-50552078 None:intergenic
TCTCAATAATTTGATTATAT+AGG 0.377920 7_4:+50554063 Msa1160560:three_prime_UTR
CATACTTCTGCTAAGATTCA+TGG 0.378386 7_4:-50550746 None:intergenic
ACACTGTTGTATGTATATAT+TGG 0.384512 7_4:+50554235 Msa1160560:three_prime_UTR
TCGGTCATCTGAACTTCTTA+AGG 0.384806 7_4:+50552929 Msa1160560:CDS
TTTAACTGAACAACAGTTGA+TGG 0.387147 7_4:+50553118 Msa1160560:CDS
TCAACTTTGTCACTTGCTTA+GGG 0.389594 7_4:+50549240 Msa1160560:five_prime_UTR
TCAATTTGGTGCTTTAAGTA+AGG 0.395237 7_4:+50551140 Msa1160560:CDS
TCAGAAATCAAGCTTATTTG+AGG 0.402345 7_4:+50554162 Msa1160560:three_prime_UTR
CTTTCCGAGACATTGGCTAA+TGG 0.402534 7_4:+50553218 Msa1160560:CDS
AGAAAGATAAGATAAGAAAA+TGG 0.403314 7_4:+50549764 Msa1160560:five_prime_UTR
TGTATGATAGATAGAGTTGA+AGG 0.404237 7_4:+50554086 Msa1160560:three_prime_UTR
GATAAGAAAATGGTTATTGA+TGG 0.411169 7_4:+50549774 Msa1160560:exon
CTCAAAATCGTGAAGCTGCC+AGG 0.414559 7_4:+50551704 Msa1160560:CDS
AAAGCAAATAGCCAAGCTTT+AGG 0.415265 7_4:+50551108 Msa1160560:CDS
AGTTGTGGATTTAAGGTTTG+TGG 0.416273 7_4:+50549740 Msa1160560:five_prime_UTR
TGCGAGCTCTGAGTTCTCTA+TGG 0.421587 7_4:+50553829 Msa1160560:CDS
TCATTTCTGAAACAAATTAT+GGG 0.421783 7_4:-50554443 None:intergenic
ACCCATTCAATGAGTGGAAA+TGG 0.422756 7_4:+50552076 Msa1160560:CDS
GGAAAGCTTGGTACTCTTGA+GGG 0.428090 7_4:+50553308 Msa1160560:CDS
CTGTAGCTCTTGCTCTAGTT+GGG 0.432408 7_4:-50551889 None:intergenic
GTTGCAACGTTTGCTGCCTC+AGG 0.435590 7_4:-50553734 None:intergenic
CTGCAATGCGTCCATTCCTT+GGG 0.435984 7_4:-50553189 None:intergenic
AAGAGCTCGAGCTGATTGTC+TGG 0.439976 7_4:-50553778 None:intergenic
CTCTATGGCTTGCACGGCCA+AGG 0.444992 7_4:+50553844 Msa1160560:CDS
TTTGAAACAGTTTACTCCCT+TGG 0.445923 7_4:-50553861 None:intergenic
TGAAAGATCAAAAGACAAAT+CGG 0.446752 7_4:+50551585 Msa1160560:CDS
TGGAAATGTGGCCAATTACA+TGG 0.448525 7_4:+50553265 Msa1160560:CDS
GCTGCAATGCGTCCATTCCT+TGG 0.454033 7_4:-50553190 None:intergenic
TATTCTCCTCCACATACTGC+TGG 0.454439 7_4:+50553993 Msa1160560:three_prime_UTR
ATAGGCAAACCAATGAACTA+AGG 0.455979 7_4:+50552727 Msa1160560:CDS
CCAGAAGCACCTGATGGGTT+GGG 0.456476 7_4:-50553245 None:intergenic
GACACTAACAAGGTTGTTAA+CGG 0.458291 7_4:+50549820 Msa1160560:CDS
ACCATTTCCACTCATTGAAT+GGG 0.458496 7_4:-50552077 None:intergenic
GCTACAGCGAGCACGCCAGC+AGG 0.459908 7_4:+50551905 Msa1160560:CDS
AAAAGACAAATCGGATCAAA+AGG 0.461930 7_4:+50551594 Msa1160560:CDS
CTGAAAGCATACAAATATAT+GGG 0.465059 7_4:+50554386 Msa1160560:three_prime_UTR
TCCAGAAGCACCTGATGGGT+TGG 0.465437 7_4:-50553246 None:intergenic
CTCAATTTGAAGATATCTAC+AGG 0.469063 7_4:+50552811 Msa1160560:CDS
GAAATCCTAGAGATTGTTCA+AGG 0.473552 7_4:-50550711 None:intergenic
ACCTCTCTGCTGCAATTGCT+GGG 0.478042 7_4:+50551277 Msa1160560:CDS
CACATGAAACACCTCTCAGC+TGG 0.482882 7_4:-50552894 None:intergenic
GGGACAAATGGCTATGGCCA+TGG 0.486901 7_4:+50553286 Msa1160560:CDS
GGCCAATTACATGGGACAAA+TGG 0.487544 7_4:+50553274 Msa1160560:CDS
TGCAACAATTAGAGAGCAGC+AGG 0.488377 7_4:+50551856 Msa1160560:CDS
AATGGTTCACCCAACCCATC+AGG 0.491558 7_4:+50553236 Msa1160560:CDS
GAGAACTCAGAGCTCGCAGC+CGG 0.499226 7_4:-50553824 None:intergenic
GGAGCCCTTGAACAATCTCT+AGG 0.499416 7_4:+50550706 Msa1160560:CDS
CTGCAATAAATTCTCATGCT+GGG 0.499442 7_4:+50552751 Msa1160560:CDS
TTGGATTTCAGGGGCATGGA+GGG 0.504205 7_4:+50550649 Msa1160560:intron
ACACTAACAAGGTTGTTAAC+GGG 0.504918 7_4:+50549821 Msa1160560:CDS
AAACGTTGCAACAAATGCTT+CGG 0.506047 7_4:+50553745 Msa1160560:CDS
GAGAGGTGTTTCATGTGGAT+TGG 0.507638 7_4:+50552900 Msa1160560:CDS
ATGTTCTTTCTGCATGAAGC+TGG 0.508217 7_4:+50553893 Msa1160560:three_prime_UTR
TGTTCAGACGTTAAGACGGC+TGG 0.509648 7_4:+50551681 Msa1160560:intron
GGTACAGTCCATTGCAAACT+CGG 0.515997 7_4:+50551248 Msa1160560:intron
GCTGCAATAAATTCTCATGC+TGG 0.516591 7_4:+50552750 Msa1160560:CDS
AGGTGTTTCATGTGGATTGG+AGG 0.518347 7_4:+50552903 Msa1160560:CDS
GAATATCAGCACCTAAAGCT+TGG 0.527661 7_4:-50551119 None:intergenic
GGGAGAGTCCAACATGGCTG+AGG 0.529600 7_4:+50551374 Msa1160560:CDS
GCAATCACTTTCCGAGACAT+TGG 0.530262 7_4:+50553211 Msa1160560:CDS
TGTTTACAAGCACCACAACT+AGG 0.531123 7_4:-50553951 None:intergenic
CAGAAAGAAGAAACAAGAGA+TGG 0.534470 7_4:-50549284 None:intergenic
GCTTTCATTTGATTAAACAC+TGG 0.536527 7_4:-50551090 None:intergenic
TCCTCCACATACTGCTGGTG+TGG 0.537278 7_4:+50553998 Msa1160560:three_prime_UTR
TACAGAAGACAAGAATCAAA+TGG 0.538000 7_4:+50551422 Msa1160560:CDS
CAATAAGTGATTATTTCTCC+CGG 0.538111 7_4:+50553805 Msa1160560:CDS
AAATCAAGCTTATTTGAGGA+TGG 0.541729 7_4:+50554166 Msa1160560:three_prime_UTR
GTATGATAGATAGAGTTGAA+GGG 0.543083 7_4:+50554087 Msa1160560:three_prime_UTR
GCTATGGCCATGGGAAAGCT+TGG 0.544267 7_4:+50553296 Msa1160560:CDS
ATAAGAAAATGGTTATTGAT+GGG 0.544270 7_4:+50549775 Msa1160560:exon
TTAACTGAACAACAGTTGAT+GGG 0.552406 7_4:+50553119 Msa1160560:CDS
CAGTAGAGGTAGAGCTGCTG+AGG 0.554988 7_4:+50549798 Msa1160560:CDS
AGAAAGAAGAAACAAGAGAT+GGG 0.555058 7_4:-50549283 None:intergenic
AGGAAAAGAAACCAAGAGAG+AGG 0.555494 7_4:-50554192 None:intergenic
GGACAAATGGCTATGGCCAT+GGG 0.556028 7_4:+50553287 Msa1160560:CDS
AGACGCTCTTTCCCAAGGAA+TGG 0.556679 7_4:+50553178 Msa1160560:CDS
GTTTATATCCGAGTTTGCAA+TGG 0.558175 7_4:-50551256 None:intergenic
GGGAAAGCTTGGTACTCTTG+AGG 0.558797 7_4:+50553307 Msa1160560:CDS
TTAGATGGAGGTGCGTAGCT+CGG 0.560830 7_4:-50549847 None:intergenic
TATGATAGATAGAGTTGAAG+GGG 0.561298 7_4:+50554088 Msa1160560:three_prime_UTR
ATCTCTAGGATTTCGTGTTG+AGG 0.565350 7_4:+50550720 Msa1160560:CDS
AGCGCTTCCCTCAGCCATGT+TGG 0.566699 7_4:-50551382 None:intergenic
ACATTTCCAGAAGCACCTGA+TGG 0.566763 7_4:-50553251 None:intergenic
GAAGATATCTACAGGCTGAA+AGG 0.567290 7_4:+50552819 Msa1160560:CDS
TCCACATTCTATCAGGAATG+TGG 0.571375 7_4:+50552865 Msa1160560:CDS
TCTTGAGGGATTTCTTCGCC+AGG 0.573076 7_4:+50553322 Msa1160560:CDS
ATCAGGTGCTTCTGGAAATG+TGG 0.573606 7_4:+50553253 Msa1160560:CDS
TGGTTATTGATGGGCAGTAG+AGG 0.574524 7_4:+50549784 Msa1160560:exon
TCTATGGCTTGCACGGCCAA+GGG 0.578391 7_4:+50553845 Msa1160560:CDS
TAGGCAAACCAATGAACTAA+GGG 0.579382 7_4:+50552728 Msa1160560:CDS
CATTTCCAGAAGCACCTGAT+GGG 0.580742 7_4:-50553250 None:intergenic
CAGCTGAGAGGTGTTTCATG+TGG 0.583907 7_4:+50552895 Msa1160560:CDS
TGCAATAAATTCTCATGCTG+GGG 0.590748 7_4:+50552752 Msa1160560:CDS
TCCACATTCCTGATAGAATG+TGG 0.593998 7_4:-50552866 None:intergenic
CAAGAGACATATCAACTGAC+TGG 0.596939 7_4:-50554293 None:intergenic
GCAACCACAAACCATTAAGC+AGG 0.597550 7_4:-50554212 None:intergenic
CAAACCTTAAATCCACAACT+AGG 0.597789 7_4:-50549737 None:intergenic
TTACATGGGACAAATGGCTA+TGG 0.598092 7_4:+50553280 Msa1160560:CDS
AGAACTCAGAGCTCGCAGCC+GGG 0.599159 7_4:-50553823 None:intergenic
TGTACCACACCAGCAGTATG+TGG 0.600053 7_4:-50554002 None:intergenic
TGAAATTGTCGACAATGGTA+CGG 0.603907 7_4:-50552785 None:intergenic
TGAGTTCTCTATGGCTTGCA+CGG 0.606772 7_4:+50553838 Msa1160560:CDS
GCTGAAGACGCTCTTTCCCA+AGG 0.608444 7_4:+50553173 Msa1160560:CDS
GAGCAGACCCATTCAATGAG+TGG 0.614912 7_4:+50552070 Msa1160560:CDS
GGAGAGTCCAACATGGCTGA+GGG 0.616774 7_4:+50551375 Msa1160560:CDS
CCAAAATCAGAAATTCGAGA+AGG 0.617363 7_4:-50550685 None:intergenic
TGAACCATTAGCCAATGTCT+CGG 0.617863 7_4:-50553222 None:intergenic
AGCTGCTGAGGACACTAACA+AGG 0.621501 7_4:+50549810 Msa1160560:CDS
GGCGGCCATCGTGAGAATTG+GGG 0.627011 7_4:+50551354 Msa1160560:CDS
AAGAGTACCAAGCTTTCCCA+TGG 0.628858 7_4:-50553303 None:intergenic
GGAAATGTGGCCAATTACAT+GGG 0.630650 7_4:+50553266 Msa1160560:CDS
AATTTGGCTTCAACATCTGG+CGG 0.636343 7_4:+50551336 Msa1160560:CDS
TTTGGATTTCAGGGGCATGG+AGG 0.641756 7_4:+50550648 Msa1160560:intron
AGTCATGAAATTGTCGACAA+TGG 0.650887 7_4:-50552790 None:intergenic
ACCCAGCAATTGCAGCAGAG+AGG 0.653003 7_4:-50551278 None:intergenic
ATGATAGATAGAGTTGAAGG+GGG 0.653631 7_4:+50554089 Msa1160560:three_prime_UTR
ACTCTCCCCAATTCTCACGA+TGG 0.657176 7_4:-50551359 None:intergenic
CTGCCAGGAAAAGCCGACTG+AGG 0.660519 7_4:+50551719 Msa1160560:CDS
ATTTACATGGAATTAGATGG+AGG 0.662803 7_4:-50549859 None:intergenic
GTTTATAGGCTGATAACCTG+AGG 0.665954 7_4:+50553718 Msa1160560:intron
AAATCCTAGAGATTGTTCAA+GGG 0.671979 7_4:-50550710 None:intergenic
TGTGGAAGACTCCAGCTGAG+AGG 0.690086 7_4:+50552883 Msa1160560:CDS
GTTGTGAAGAAGCCTAGTTG+TGG 0.701594 7_4:+50553939 Msa1160560:three_prime_UTR
GAATTGGGGAGAGTCCAACA+TGG 0.702168 7_4:+50551368 Msa1160560:CDS
ACCACACCAGCAGTATGTGG+AGG 0.703241 7_4:-50553999 None:intergenic
TTGATGCAGAATACGCACGA+TGG 0.731911 7_4:+50552691 Msa1160560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTGTTTAAATTTATTGT+AGG + chr7_4:50549953-50549972 Msa1160560:intron 10.0%
!! AAAAAAAAACAACAAAAAAA+GGG - chr7_4:50550803-50550822 None:intergenic 10.0%
!!! TATCATTATTTACTTTTTTA+AGG - chr7_4:50550979-50550998 None:intergenic 10.0%
!!! TGATTTTTATGAGAATTTAA+TGG - chr7_4:50549338-50549357 None:intergenic 15.0%
!!! TTATTTTTTTCTTTCTGTTT+TGG + chr7_4:50549439-50549458 Msa1160560:intron 15.0%
!! AACAAAATAAGAAAAAACAT+TGG - chr7_4:50549561-50549580 None:intergenic 15.0%
!! AAGATTAACATTAAACAAAA+GGG - chr7_4:50549896-50549915 None:intergenic 15.0%
!! TAAGATTAACATTAAACAAA+AGG - chr7_4:50549897-50549916 None:intergenic 15.0%
!! AAAAAAAACAACAAAAAAAG+GGG - chr7_4:50550802-50550821 None:intergenic 15.0%
!! CAAAAAAAAACAACAAAAAA+AGG - chr7_4:50550804-50550823 None:intergenic 15.0%
!! AAGATGATATACAAATAAAT+AGG - chr7_4:50551064-50551083 None:intergenic 15.0%
!!! TTGCAATTTATTGATTTTAT+TGG - chr7_4:50551178-50551197 None:intergenic 15.0%
!! ATTTACAATTTAACAGAAAA+AGG - chr7_4:50551757-50551776 None:intergenic 15.0%
!!! TTTGATTATTTATCTTTTCT+AGG + chr7_4:50552024-50552043 Msa1160560:intron 15.0%
!!! TTGATTATTTATCTTTTCTA+GGG + chr7_4:50552025-50552044 Msa1160560:intron 15.0%
!! TCTCAATAATTTGATTATAT+AGG + chr7_4:50554063-50554082 Msa1160560:three_prime_UTR 15.0%
!!! TTTGTTACCAATGTTATTTA+AGG + chr7_4:50549575-50549594 Msa1160560:intron 20.0%
!! AAAACATCCTTAAATAACAT+TGG - chr7_4:50549585-50549604 None:intergenic 20.0%
!!! TTAATTCATGTTTTTCTTTG+TGG + chr7_4:50549665-50549684 Msa1160560:intron 20.0%
!! AGAAAGATAAGATAAGAAAA+TGG + chr7_4:50549764-50549783 Msa1160560:five_prime_UTR 20.0%
!! ATAAGAAAATGGTTATTGAT+GGG + chr7_4:50549775-50549794 Msa1160560:exon 20.0%
!!! ATGAACAAAGTTTTAAATTG+CGG + chr7_4:50550169-50550188 Msa1160560:intron 20.0%
!! ATTGCTTTACTTTAATCATA+CGG + chr7_4:50551447-50551466 Msa1160560:intron 20.0%
!! CAAAAGCAAAATTTAACATA+TGG - chr7_4:50551663-50551682 None:intergenic 20.0%
!! ATGAAAAAAGAAACATATCA+CGG - chr7_4:50552288-50552307 None:intergenic 20.0%
!!! GATATTTTTAAAGGAAATGT+TGG - chr7_4:50552319-50552338 None:intergenic 20.0%
!!! AAGAGGTTTGATATTTTTAA+AGG - chr7_4:50552328-50552347 None:intergenic 20.0%
!! GTATATGTTATCAAAATAAG+AGG - chr7_4:50552345-50552364 None:intergenic 20.0%
!! TATACTCTTTATCACTTTAT+TGG - chr7_4:50553536-50553555 None:intergenic 20.0%
!!! TCATTTCTGAAACAAATTAT+GGG - chr7_4:50554446-50554465 None:intergenic 20.0%
! GAATTTAATGGAAATTGAAG+AGG - chr7_4:50549326-50549345 None:intergenic 25.0%
!!! AAAGTTGTGTTTGTTTTTCA+AGG + chr7_4:50549714-50549733 Msa1160560:intron 25.0%
! GATAAGAAAATGGTTATTGA+TGG + chr7_4:50549774-50549793 Msa1160560:exon 25.0%
! CAAATTTACATGGAATTAGA+TGG - chr7_4:50549865-50549884 None:intergenic 25.0%
! ATGTTAATCTTACTCTTGAT+TGG + chr7_4:50549905-50549924 Msa1160560:intron 25.0%
!!! ATTGGTCTTGCTATTAATTT+TGG + chr7_4:50549923-50549942 Msa1160560:intron 25.0%
!!! TTGGTCTTGCTATTAATTTT+GGG + chr7_4:50549924-50549943 Msa1160560:intron 25.0%
! GTAGAAATTATGCATGTTAT+TGG + chr7_4:50550034-50550053 Msa1160560:intron 25.0%
! TTGGGAATTCTTAAATTTAG+AGG + chr7_4:50550144-50550163 Msa1160560:intron 25.0%
!!! TAAACGGAAGTATTTTTACA+GGG - chr7_4:50550314-50550333 None:intergenic 25.0%
! GTTATGTTCTATGAAGTAAA+CGG - chr7_4:50550330-50550349 None:intergenic 25.0%
!! CAAAAAGAAAAGAGCATATA+AGG - chr7_4:50550436-50550455 None:intergenic 25.0%
!! TATATGCTCTTTTCTTTTTG+TGG + chr7_4:50550436-50550455 Msa1160560:intron 25.0%
! AATAGCAATCTTCTATGAAA+AGG - chr7_4:50550467-50550486 None:intergenic 25.0%
! CAACATGTTAAACATATGTT+GGG - chr7_4:50550621-50550640 None:intergenic 25.0%
! ACAACATGTTAAACATATGT+TGG - chr7_4:50550622-50550641 None:intergenic 25.0%
!! TTAACATGTTGTCATGATTT+TGG + chr7_4:50550630-50550649 Msa1160560:intron 25.0%
! ACAAATAAATAGGTTAATCG+AGG - chr7_4:50551054-50551073 None:intergenic 25.0%
!!! AATGAAGATGGCTATTTTAT+TGG - chr7_4:50551533-50551552 None:intergenic 25.0%
! TGAAAGATCAAAAGACAAAT+CGG + chr7_4:50551585-50551604 Msa1160560:CDS 25.0%
!! GGAATATTTATTTCAAGTAC+TGG + chr7_4:50552046-50552065 Msa1160560:CDS 25.0%
!! TAACATTGAATTTAAAGCTG+TGG + chr7_4:50552205-50552224 Msa1160560:intron 25.0%
!!! GATTAAGTGTTGGATTTTTA+AGG + chr7_4:50553014-50553033 Msa1160560:intron 25.0%
! AATTAATTGTGTACCTTAGA+GGG + chr7_4:50553560-50553579 Msa1160560:intron 25.0%
! AAAGGAAAACAAAAGTGAAT+TGG - chr7_4:50553690-50553709 None:intergenic 25.0%
! ACACTGTTGTATGTATATAT+TGG + chr7_4:50554235-50554254 Msa1160560:three_prime_UTR 25.0%
! GTTCTTGAGATAAAAATTGT+AGG + chr7_4:50554345-50554364 Msa1160560:three_prime_UTR 25.0%
!! TCTGAAAGCATACAAATATA+TGG + chr7_4:50554385-50554404 Msa1160560:three_prime_UTR 25.0%
!! CTGAAAGCATACAAATATAT+GGG + chr7_4:50554386-50554405 Msa1160560:three_prime_UTR 25.0%
!!! GTCATTTCTGAAACAAATTA+TGG - chr7_4:50554447-50554466 None:intergenic 25.0%
!! ACAAGTCTTGTTATTGTTGT+TGG + chr7_4:50549208-50549227 Msa1160560:five_prime_UTR 30.0%
AGAAAGAAGAAACAAGAGAT+GGG - chr7_4:50549286-50549305 None:intergenic 30.0%
! ATCTCTTGTTTCTTCTTTCT+GGG + chr7_4:50549286-50549305 Msa1160560:five_prime_UTR 30.0%
!!! TGTTCAGCTTTGTTTTTACA+AGG + chr7_4:50549385-50549404 Msa1160560:intron 30.0%
!! CAGTTTTGTACTTTGTTTCT+AGG + chr7_4:50549481-50549500 Msa1160560:intron 30.0%
AAAAACATTGGCAACGAAAT+AGG - chr7_4:50549549-50549568 None:intergenic 30.0%
TAACTACAAGTTCATGAAAC+AGG - chr7_4:50549617-50549636 None:intergenic 30.0%
!! TGTGGTTTAATTTTCTCATG+TGG + chr7_4:50549683-50549702 Msa1160560:intron 30.0%
!! GTGGTTTAATTTTCTCATGT+GGG + chr7_4:50549684-50549703 Msa1160560:intron 30.0%
ATTTACATGGAATTAGATGG+AGG - chr7_4:50549862-50549881 None:intergenic 30.0%
ATTCCATGTAAATTTGTCTG+AGG + chr7_4:50549869-50549888 Msa1160560:intron 30.0%
!!! TGGTCTTGCTATTAATTTTG+GGG + chr7_4:50549925-50549944 Msa1160560:intron 30.0%
! TTATTGTAGGTGCTTTTAGA+TGG + chr7_4:50549966-50549985 Msa1160560:intron 30.0%
TAGTACATGTGTTATGTAAC+TGG + chr7_4:50550012-50550031 Msa1160560:intron 30.0%
TATGACGTTGAATTGAAGTT+AGG + chr7_4:50550062-50550081 Msa1160560:intron 30.0%
ATGACGTTGAATTGAAGTTA+GGG + chr7_4:50550063-50550082 Msa1160560:intron 30.0%
! ATTGAAGTTAGGGTCTATTT+TGG + chr7_4:50550073-50550092 Msa1160560:intron 30.0%
CAAAATTCTCTCCAATATCA+AGG - chr7_4:50550202-50550221 None:intergenic 30.0%
! CTTGATATTGGAGAGAATTT+TGG + chr7_4:50550200-50550219 Msa1160560:intron 30.0%
! AATGCTGTTGATGCTTTTAT+AGG + chr7_4:50550226-50550245 Msa1160560:intron 30.0%
!!! GTAAACGGAAGTATTTTTAC+AGG - chr7_4:50550315-50550334 None:intergenic 30.0%
TTACTTCATAGAACATAACG+CGG + chr7_4:50550331-50550350 Msa1160560:intron 30.0%
CTCAAGATCTAACAACAAAT+CGG - chr7_4:50550515-50550534 None:intergenic 30.0%
CCATGTTTCAAAGCTAAAAA+GGG - chr7_4:50550551-50550570 None:intergenic 30.0%
TCCATGTTTCAAAGCTAAAA+AGG - chr7_4:50550552-50550571 None:intergenic 30.0%
TGAAACATGGATTTCATCAT+TGG + chr7_4:50550561-50550580 Msa1160560:intron 30.0%
! TTGTCATGATTTTGGATTTC+AGG + chr7_4:50550638-50550657 Msa1160560:intron 30.0%
! TGTCATGATTTTGGATTTCA+GGG + chr7_4:50550639-50550658 Msa1160560:intron 30.0%
AAATCCTAGAGATTGTTCAA+GGG - chr7_4:50550713-50550732 None:intergenic 30.0%
TACAAACAAATGCAACAAGT+TGG - chr7_4:50550938-50550957 None:intergenic 30.0%
!!! TACTTTTTTAAGGACTTCTC+TGG - chr7_4:50550969-50550988 None:intergenic 30.0%
GCTTTCATTTGATTAAACAC+TGG - chr7_4:50551093-50551112 None:intergenic 30.0%
!! TTAGGTGCTGATATTCAATT+TGG + chr7_4:50551126-50551145 Msa1160560:CDS 30.0%
!! TCAATTTGGTGCTTTAAGTA+AGG + chr7_4:50551140-50551159 Msa1160560:CDS 30.0%
TACAGAAGACAAGAATCAAA+TGG + chr7_4:50551422-50551441 Msa1160560:CDS 30.0%
CTGCAAAACAAAAATGAAGA+TGG - chr7_4:50551545-50551564 None:intergenic 30.0%
! TTTGTCTTTTGATCTTTCAC+TGG - chr7_4:50551584-50551603 None:intergenic 30.0%
AAAAGACAAATCGGATCAAA+AGG + chr7_4:50551594-50551613 Msa1160560:CDS 30.0%
ATTCTTCTTTCCATTCATTC+AGG + chr7_4:50551827-50551846 Msa1160560:intron 30.0%
!! TCTTTGTTGCTATTTCATTC+TGG + chr7_4:50551977-50551996 Msa1160560:intron 30.0%
AAAAATTCCTCCAAGTAGAA+GGG - chr7_4:50552166-50552185 None:intergenic 30.0%
! TTCTACTTGGAGGAATTTTT+CGG + chr7_4:50552166-50552185 Msa1160560:intron 30.0%
!!! AGAGTTAATGGATTTTGCAT+TGG - chr7_4:50552237-50552256 None:intergenic 30.0%
ATGCAAAATCCATTAACTCT+TGG + chr7_4:50552237-50552256 Msa1160560:intron 30.0%
CAACATTATACGTATGTTGT+CGG + chr7_4:50552424-50552443 Msa1160560:intron 30.0%
TTGTCTTTAATCACACATGA+TGG - chr7_4:50552518-50552537 None:intergenic 30.0%
CAAAAACGTCAACACAATTT+AGG - chr7_4:50552651-50552670 None:intergenic 30.0%
!! CTAAATTGTGTTGACGTTTT+TGG + chr7_4:50552649-50552668 Msa1160560:intron 30.0%
CTCAATTTGAAGATATCTAC+AGG + chr7_4:50552811-50552830 Msa1160560:CDS 30.0%
CCATAGAGAATAAACAAATG+AGG - chr7_4:50552964-50552983 None:intergenic 30.0%
CCTCATTTGTTTATTCTCTA+TGG + chr7_4:50552961-50552980 Msa1160560:intron 30.0%
GATAACGATTGATTAAGTGT+TGG + chr7_4:50553004-50553023 Msa1160560:intron 30.0%
! GTTATTCGTACATCTAAAAC+TGG + chr7_4:50553056-50553075 Msa1160560:intron 30.0%
ATCAACTGTTGTTCAGTTAA+AGG - chr7_4:50553119-50553138 None:intergenic 30.0%
TTTAACTGAACAACAGTTGA+TGG + chr7_4:50553118-50553137 Msa1160560:CDS 30.0%
TTAACTGAACAACAGTTGAT+GGG + chr7_4:50553119-50553138 Msa1160560:CDS 30.0%
GAAATAGACAGTTAATTACC+TGG - chr7_4:50553343-50553362 None:intergenic 30.0%
! TATCTCAACTTCCTTCTTTT+TGG + chr7_4:50553365-50553384 Msa1160560:intron 30.0%
GTTATTGAATGAAACTGTGT+CGG - chr7_4:50553429-50553448 None:intergenic 30.0%
GAATTAATTGTGTACCTTAG+AGG + chr7_4:50553559-50553578 Msa1160560:intron 30.0%
! TCCTTTTCCTTCATGTTTAT+AGG + chr7_4:50553704-50553723 Msa1160560:intron 30.0%
TTATCAGCCTATAAACATGA+AGG - chr7_4:50553714-50553733 None:intergenic 30.0%
! CAATAAGTGATTATTTCTCC+CGG + chr7_4:50553805-50553824 Msa1160560:CDS 30.0%
TGTATGATAGATAGAGTTGA+AGG + chr7_4:50554086-50554105 Msa1160560:three_prime_UTR 30.0%
GTATGATAGATAGAGTTGAA+GGG + chr7_4:50554087-50554106 Msa1160560:three_prime_UTR 30.0%
TATGATAGATAGAGTTGAAG+GGG + chr7_4:50554088-50554107 Msa1160560:three_prime_UTR 30.0%
TCAGAAATCAAGCTTATTTG+AGG + chr7_4:50554162-50554181 Msa1160560:three_prime_UTR 30.0%
AAATCAAGCTTATTTGAGGA+TGG + chr7_4:50554166-50554185 Msa1160560:three_prime_UTR 30.0%
! TTCAACTTTGTCACTTGCTT+AGG + chr7_4:50549239-50549258 Msa1160560:five_prime_UTR 35.0%
! TCAACTTTGTCACTTGCTTA+GGG + chr7_4:50549240-50549259 Msa1160560:five_prime_UTR 35.0%
AGAAACAAGAGATGGGAAAA+TGG - chr7_4:50549279-50549298 None:intergenic 35.0%
CAGAAAGAAGAAACAAGAGA+TGG - chr7_4:50549287-50549306 None:intergenic 35.0%
! CATCTCTTGTTTCTTCTTTC+TGG + chr7_4:50549285-50549304 Msa1160560:five_prime_UTR 35.0%
!!! TCAGCTTTGTTTTTACAAGG+TGG + chr7_4:50549388-50549407 Msa1160560:intron 35.0%
!!! CAGCTTTGTTTTTACAAGGT+GGG + chr7_4:50549389-50549408 Msa1160560:intron 35.0%
!! TTTGTTTCTAGGCAGTTGTA+CGG + chr7_4:50549492-50549511 Msa1160560:intron 35.0%
CAAACCTTAAATCCACAACT+AGG - chr7_4:50549740-50549759 None:intergenic 35.0%
! AGTTGTGGATTTAAGGTTTG+TGG + chr7_4:50549740-50549759 Msa1160560:five_prime_UTR 35.0%
GACACTAACAAGGTTGTTAA+CGG + chr7_4:50549820-50549839 Msa1160560:CDS 35.0%
ACACTAACAAGGTTGTTAAC+GGG + chr7_4:50549821-50549840 Msa1160560:CDS 35.0%
!!! GGTCTTGCTATTAATTTTGG+GGG + chr7_4:50549926-50549945 Msa1160560:intron 35.0%
CATGAAAAAAATTGATGCCG+TGG + chr7_4:50550253-50550272 Msa1160560:intron 35.0%
!!! CCCTTTTTAGCTTTGAAACA+TGG + chr7_4:50550548-50550567 Msa1160560:intron 35.0%
! GTCATGATTTTGGATTTCAG+GGG + chr7_4:50550640-50550659 Msa1160560:intron 35.0%
CCAAAATCAGAAATTCGAGA+AGG - chr7_4:50550688-50550707 None:intergenic 35.0%
! CCTTCTCGAATTTCTGATTT+TGG + chr7_4:50550685-50550704 Msa1160560:CDS 35.0%
GAAATCCTAGAGATTGTTCA+AGG - chr7_4:50550714-50550733 None:intergenic 35.0%
CATACTTCTGCTAAGATTCA+TGG - chr7_4:50550749-50550768 None:intergenic 35.0%
TTAACGATATGCAAGTGTGA+CGG - chr7_4:50550888-50550907 None:intergenic 35.0%
AGGTTAATCGAGGATTCATA+AGG - chr7_4:50551044-50551063 None:intergenic 35.0%
AAAGCAAATAGCCAAGCTTT+AGG + chr7_4:50551108-50551127 Msa1160560:CDS 35.0%
TCTTCACTTGCATGTATGTA+CGG + chr7_4:50551227-50551246 Msa1160560:intron 35.0%
GTTTATATCCGAGTTTGCAA+TGG - chr7_4:50551259-50551278 None:intergenic 35.0%
CATACGGTTTATTCTGAATC+TGG + chr7_4:50551463-50551482 Msa1160560:intron 35.0%
!!! TTTTTGTTTTGCAGCCTGAA+AGG + chr7_4:50551551-50551570 Msa1160560:intron 35.0%
!!! TTTTGTTTTGCAGCCTGAAA+GGG + chr7_4:50551552-50551571 Msa1160560:intron 35.0%
! CTTTTGTTCAGACGTTAAGA+CGG + chr7_4:50551677-50551696 Msa1160560:intron 35.0%
AAATAGCAAAACAAACCTGC+TGG - chr7_4:50551923-50551942 None:intergenic 35.0%
ACCATTTCCACTCATTGAAT+GGG - chr7_4:50552080-50552099 None:intergenic 35.0%
TACCATTTCCACTCATTGAA+TGG - chr7_4:50552081-50552100 None:intergenic 35.0%
GAAAAATTCCTCCAAGTAGA+AGG - chr7_4:50552167-50552186 None:intergenic 35.0%
TTTGTCAAGCCAAGAGTTAA+TGG - chr7_4:50552249-50552268 None:intergenic 35.0%
GAAAATAGTAGTCTGTAGCA+TGG + chr7_4:50552585-50552604 Msa1160560:intron 35.0%
! GATGGTTAGAAGAGCATAAT+AGG + chr7_4:50552709-50552728 Msa1160560:CDS 35.0%
ATAGGCAAACCAATGAACTA+AGG + chr7_4:50552727-50552746 Msa1160560:CDS 35.0%
TAGGCAAACCAATGAACTAA+GGG + chr7_4:50552728-50552747 Msa1160560:CDS 35.0%
CTGCAATAAATTCTCATGCT+GGG + chr7_4:50552751-50552770 Msa1160560:CDS 35.0%
TGCAATAAATTCTCATGCTG+GGG + chr7_4:50552752-50552771 Msa1160560:CDS 35.0%
TGAAATTGTCGACAATGGTA+CGG - chr7_4:50552788-50552807 None:intergenic 35.0%
AGTCATGAAATTGTCGACAA+TGG - chr7_4:50552793-50552812 None:intergenic 35.0%
! GATGTTTTCCACATTCTATC+AGG + chr7_4:50552858-50552877 Msa1160560:CDS 35.0%
TACAGACACAAACATGACAA+CGG - chr7_4:50553485-50553504 None:intergenic 35.0%
GCCTATAAACATGAAGGAAA+AGG - chr7_4:50553708-50553727 None:intergenic 35.0%
AAACGTTGCAACAAATGCTT+CGG + chr7_4:50553745-50553764 Msa1160560:CDS 35.0%
! TTTGAAACAGTTTACTCCCT+TGG - chr7_4:50553864-50553883 None:intergenic 35.0%
ATGATAGATAGAGTTGAAGG+GGG + chr7_4:50554089-50554108 Msa1160560:three_prime_UTR 35.0%
! TGGTTTCTTTTCCTGCTTAA+TGG + chr7_4:50554201-50554220 Msa1160560:three_prime_UTR 35.0%
! TTTTCCTGCTTAATGGTTTG+TGG + chr7_4:50554208-50554227 Msa1160560:three_prime_UTR 35.0%
ATTGGCAACGAAATAGGTGT+CGG - chr7_4:50549543-50549562 None:intergenic 40.0%
!!! TGTTTTTCAAGGCCTAGTTG+TGG + chr7_4:50549725-50549744 Msa1160560:intron 40.0%
AAGGCCTAGTTGTGGATTTA+AGG + chr7_4:50549733-50549752 Msa1160560:intron 40.0%
GGTCCTCAGACAAATTTACA+TGG - chr7_4:50549875-50549894 None:intergenic 40.0%
!! GAAGTTAGGGTCTATTTTGG+TGG + chr7_4:50550076-50550095 Msa1160560:intron 40.0%
GCGGATACTAACCTTGATAT+TGG + chr7_4:50550188-50550207 Msa1160560:intron 40.0%
GAAAAAAATTGATGCCGTGG+TGG + chr7_4:50550256-50550275 Msa1160560:intron 40.0%
TAGATCTTGAGCATCCATGT+TGG + chr7_4:50550524-50550543 Msa1160560:intron 40.0%
AAGCTAAAAAGGGTCCAACA+TGG - chr7_4:50550541-50550560 None:intergenic 40.0%
!! ATCTCTAGGATTTCGTGTTG+AGG + chr7_4:50550720-50550739 Msa1160560:CDS 40.0%
! AGAAGTATGTCGCTCACATT+TGG + chr7_4:50550760-50550779 Msa1160560:intron 40.0%
GGTATAAGCACTAAGAACAC+AGG - chr7_4:50550867-50550886 None:intergenic 40.0%
GAATATCAGCACCTAAAGCT+TGG - chr7_4:50551122-50551141 None:intergenic 40.0%
! ACATGCAAGTGAAGAGTGTA+AGG - chr7_4:50551222-50551241 None:intergenic 40.0%
CCAGATGTTGAAGCCAAATT+TGG - chr7_4:50551336-50551355 None:intergenic 40.0%
! CCAAATTTGGCTTCAACATC+TGG + chr7_4:50551333-50551352 Msa1160560:CDS 40.0%
! AATTTGGCTTCAACATCTGG+CGG + chr7_4:50551336-50551355 Msa1160560:CDS 40.0%
!!! TTTGTTTTGCAGCCTGAAAG+GGG + chr7_4:50551553-50551572 Msa1160560:intron 40.0%
TGTTTCTTCTGCATGCAATC+TGG + chr7_4:50551789-50551808 Msa1160560:intron 40.0%
TGCACATATGCCTGAATGAA+TGG - chr7_4:50551840-50551859 None:intergenic 40.0%
ACCCATTCAATGAGTGGAAA+TGG + chr7_4:50552076-50552095 Msa1160560:CDS 40.0%
! TTCAAGCTTGCTCACACAAT+TGG - chr7_4:50552122-50552141 None:intergenic 40.0%
ACATATCACGGCAAATGTCA+TGG - chr7_4:50552276-50552295 None:intergenic 40.0%
ATAGTAGTCTGTAGCATGGA+TGG + chr7_4:50552589-50552608 Msa1160560:intron 40.0%
TATTGCAGCCCTTAGTTCAT+TGG - chr7_4:50552739-50552758 None:intergenic 40.0%
GCTGCAATAAATTCTCATGC+TGG + chr7_4:50552750-50552769 Msa1160560:CDS 40.0%
GAAGATATCTACAGGCTGAA+AGG + chr7_4:50552819-50552838 Msa1160560:CDS 40.0%
TCCACATTCTATCAGGAATG+TGG + chr7_4:50552865-50552884 Msa1160560:CDS 40.0%
TCCACATTCCTGATAGAATG+TGG - chr7_4:50552869-50552888 None:intergenic 40.0%
TCGGTCATCTGAACTTCTTA+AGG + chr7_4:50552929-50552948 Msa1160560:CDS 40.0%
GCAGCTTCTTGTAAGTCATT+TGG + chr7_4:50553091-50553110 Msa1160560:intron 40.0%
TGAACCATTAGCCAATGTCT+CGG - chr7_4:50553225-50553244 None:intergenic 40.0%
TGGAAATGTGGCCAATTACA+TGG + chr7_4:50553265-50553284 Msa1160560:CDS 40.0%
GGAAATGTGGCCAATTACAT+GGG + chr7_4:50553266-50553285 Msa1160560:CDS 40.0%
AGCCATTTGTCCCATGTAAT+TGG - chr7_4:50553279-50553298 None:intergenic 40.0%
TTACATGGGACAAATGGCTA+TGG + chr7_4:50553280-50553299 Msa1160560:CDS 40.0%
! CTCAACTTCCTTCTTTTTGG+AGG + chr7_4:50553368-50553387 Msa1160560:intron 40.0%
GGATACACGGTATACAACAA+CGG - chr7_4:50553459-50553478 None:intergenic 40.0%
ATGACAACGGAATGGATACA+CGG - chr7_4:50553472-50553491 None:intergenic 40.0%
ACACAAACATGACAACGGAA+TGG - chr7_4:50553480-50553499 None:intergenic 40.0%
GTTTATAGGCTGATAACCTG+AGG + chr7_4:50553718-50553737 Msa1160560:intron 40.0%
ATGTTCTTTCTGCATGAAGC+TGG + chr7_4:50553893-50553912 Msa1160560:three_prime_UTR 40.0%
TGTTTACAAGCACCACAACT+AGG - chr7_4:50553954-50553973 None:intergenic 40.0%
AGGAAAAGAAACCAAGAGAG+AGG - chr7_4:50554195-50554214 None:intergenic 40.0%
CAAGAGACATATCAACTGAC+TGG - chr7_4:50554296-50554315 None:intergenic 40.0%
! TGGTTATTGATGGGCAGTAG+AGG + chr7_4:50549784-50549803 Msa1160560:exon 45.0%
! GATTTTGGATTTCAGGGGCA+TGG + chr7_4:50550645-50550664 Msa1160560:intron 45.0%
AATAGTTGTTCCCCTCTCGA+TGG + chr7_4:50551016-50551035 Msa1160560:intron 45.0%
TTCATAAGGCTCCATCGAGA+GGG - chr7_4:50551030-50551049 None:intergenic 45.0%
ATTCATAAGGCTCCATCGAG+AGG - chr7_4:50551031-50551050 None:intergenic 45.0%
GGTACAGTCCATTGCAAACT+CGG + chr7_4:50551248-50551267 Msa1160560:intron 45.0%
AAAAGACGCGCTGCCAAATT+TGG + chr7_4:50551320-50551339 Msa1160560:CDS 45.0%
!! TTGTTTTGCAGCCTGAAAGG+GGG + chr7_4:50551554-50551573 Msa1160560:intron 45.0%
GAAAAGCCGACTGAGGAAAA+AGG + chr7_4:50551726-50551745 Msa1160560:CDS 45.0%
! GCTGTACCTTTTTCCTCAGT+CGG - chr7_4:50551735-50551754 None:intergenic 45.0%
TGCAACAATTAGAGAGCAGC+AGG + chr7_4:50551856-50551875 Msa1160560:CDS 45.0%
CTGTAGCTCTTGCTCTAGTT+GGG - chr7_4:50551892-50551911 None:intergenic 45.0%
! AAGCTTGCTCACACAATTGG+AGG - chr7_4:50552119-50552138 None:intergenic 45.0%
GCATCAAAGTCCCTTCTACT+TGG + chr7_4:50552153-50552172 Msa1160560:intron 45.0%
TCAAAGTCCCTTCTACTTGG+AGG + chr7_4:50552156-50552175 Msa1160560:intron 45.0%
!!! TGTTGACGTTTTTGGTGTGC+AGG + chr7_4:50552657-50552676 Msa1160560:intron 45.0%
!! TTTTTGGTGTGCAGGTGCAA+TGG + chr7_4:50552665-50552684 Msa1160560:intron 45.0%
!! GAGAGGTGTTTCATGTGGAT+TGG + chr7_4:50552900-50552919 Msa1160560:CDS 45.0%
!! AGGTGTTTCATGTGGATTGG+AGG + chr7_4:50552903-50552922 Msa1160560:CDS 45.0%
!! TCATGTGGATTGGAGGCTTT+CGG + chr7_4:50552910-50552929 Msa1160560:CDS 45.0%
GCAATCACTTTCCGAGACAT+TGG + chr7_4:50553211-50553230 Msa1160560:CDS 45.0%
! CTTTCCGAGACATTGGCTAA+TGG + chr7_4:50553218-50553237 Msa1160560:CDS 45.0%
!! CATTTCCAGAAGCACCTGAT+GGG - chr7_4:50553253-50553272 None:intergenic 45.0%
!! ACATTTCCAGAAGCACCTGA+TGG - chr7_4:50553254-50553273 None:intergenic 45.0%
! ATCAGGTGCTTCTGGAAATG+TGG + chr7_4:50553253-50553272 Msa1160560:CDS 45.0%
GGCCAATTACATGGGACAAA+TGG + chr7_4:50553274-50553293 Msa1160560:CDS 45.0%
!! AAGAGTACCAAGCTTTCCCA+TGG - chr7_4:50553306-50553325 None:intergenic 45.0%
GGAAAGCTTGGTACTCTTGA+GGG + chr7_4:50553308-50553327 Msa1160560:CDS 45.0%
GTAATGCATCTCACCCTCTA+AGG - chr7_4:50553576-50553595 None:intergenic 45.0%
! TGAGTTCTCTATGGCTTGCA+CGG + chr7_4:50553838-50553857 Msa1160560:CDS 45.0%
! TGCATGAAGCTGGTGTCTTT+TGG + chr7_4:50553903-50553922 Msa1160560:three_prime_UTR 45.0%
GTTGTGAAGAAGCCTAGTTG+TGG + chr7_4:50553939-50553958 Msa1160560:three_prime_UTR 45.0%
TATTCTCCTCCACATACTGC+TGG + chr7_4:50553993-50554012 Msa1160560:three_prime_UTR 45.0%
GCAACCACAAACCATTAAGC+AGG - chr7_4:50554215-50554234 None:intergenic 45.0%
!!! ATTTTGAAAATAAAAATAAA+AGG - chr7_4:50549415-50549434 None:intergenic 5.0%
!!! TTTTATTGTTTATTAATTAT+TGG + chr7_4:50550125-50550144 Msa1160560:intron 5.0%
!! TTTATTGTTTATTAATTATT+GGG + chr7_4:50550126-50550145 Msa1160560:intron 5.0%
AGCTGCTGAGGACACTAACA+AGG + chr7_4:50549810-50549829 Msa1160560:CDS 50.0%
! TTAGATGGAGGTGCGTAGCT+CGG - chr7_4:50549850-50549869 None:intergenic 50.0%
! TTTGGATTTCAGGGGCATGG+AGG + chr7_4:50550648-50550667 Msa1160560:intron 50.0%
! TTGGATTTCAGGGGCATGGA+GGG + chr7_4:50550649-50550668 Msa1160560:intron 50.0%
GGAGCCCTTGAACAATCTCT+AGG + chr7_4:50550706-50550725 Msa1160560:CDS 50.0%
TCATAAGGCTCCATCGAGAG+GGG - chr7_4:50551029-50551048 None:intergenic 50.0%
AACCTCTCTGCTGCAATTGC+TGG + chr7_4:50551276-50551295 Msa1160560:CDS 50.0%
ACCTCTCTGCTGCAATTGCT+GGG + chr7_4:50551277-50551296 Msa1160560:CDS 50.0%
ACTCTCCCCAATTCTCACGA+TGG - chr7_4:50551362-50551381 None:intergenic 50.0%
GAATTGGGGAGAGTCCAACA+TGG + chr7_4:50551368-50551387 Msa1160560:CDS 50.0%
! TGTTTTGCAGCCTGAAAGGG+GGG + chr7_4:50551555-50551574 Msa1160560:intron 50.0%
TGTTCAGACGTTAAGACGGC+TGG + chr7_4:50551681-50551700 Msa1160560:intron 50.0%
CTCAAAATCGTGAAGCTGCC+AGG + chr7_4:50551704-50551723 Msa1160560:CDS 50.0%
!! TTTCCTCAGTCGGCTTTTCC+TGG - chr7_4:50551725-50551744 None:intergenic 50.0%
GCTGTAGCTCTTGCTCTAGT+TGG - chr7_4:50551893-50551912 None:intergenic 50.0%
GAGCAGACCCATTCAATGAG+TGG + chr7_4:50552070-50552089 Msa1160560:CDS 50.0%
CACATGAAACACCTCTCAGC+TGG - chr7_4:50552897-50552916 None:intergenic 50.0%
!! CAGCTGAGAGGTGTTTCATG+TGG + chr7_4:50552895-50552914 Msa1160560:CDS 50.0%
AGACGCTCTTTCCCAAGGAA+TGG + chr7_4:50553178-50553197 Msa1160560:CDS 50.0%
CTGCAATGCGTCCATTCCTT+GGG - chr7_4:50553192-50553211 None:intergenic 50.0%
AATGGTTCACCCAACCCATC+AGG + chr7_4:50553236-50553255 Msa1160560:CDS 50.0%
GGACAAATGGCTATGGCCAT+GGG + chr7_4:50553287-50553306 Msa1160560:CDS 50.0%
GGGAAAGCTTGGTACTCTTG+AGG + chr7_4:50553307-50553326 Msa1160560:CDS 50.0%
TCTTGAGGGATTTCTTCGCC+AGG + chr7_4:50553322-50553341 Msa1160560:CDS 50.0%
!! CTTCTTTTTGGAGGCGTGTC+CGG + chr7_4:50553377-50553396 Msa1160560:intron 50.0%
CACTCACACATGTCGAACAC+CGG - chr7_4:50553399-50553418 None:intergenic 50.0%
AAGAGCTCGAGCTGATTGTC+TGG - chr7_4:50553781-50553800 None:intergenic 50.0%
!! TGCGAGCTCTGAGTTCTCTA+TGG + chr7_4:50553829-50553848 Msa1160560:CDS 50.0%
TGTACCACACCAGCAGTATG+TGG - chr7_4:50554005-50554024 None:intergenic 50.0%
GAGGATGGTTTCCTCTCTCT+TGG + chr7_4:50554181-50554200 Msa1160560:three_prime_UTR 50.0%
CAGTAGAGGTAGAGCTGCTG+AGG + chr7_4:50549798-50549817 Msa1160560:CDS 55.0%
TGCCGTGGTGGCACAAATCA+CGG + chr7_4:50550268-50550287 Msa1160560:intron 55.0%
! GACCGTGATTTGTGCCACCA+CGG - chr7_4:50550273-50550292 None:intergenic 55.0%
ACTGACAATTCGCGTCAGCG+AGG - chr7_4:50550370-50550389 None:intergenic 55.0%
ACCCAGCAATTGCAGCAGAG+AGG - chr7_4:50551281-50551300 None:intergenic 55.0%
TGGCGGCCATCGTGAGAATT+GGG + chr7_4:50551353-50551372 Msa1160560:CDS 55.0%
GGAGAGTCCAACATGGCTGA+GGG + chr7_4:50551375-50551394 Msa1160560:CDS 55.0%
TCACTGGATTCCCCCCTTTC+AGG - chr7_4:50551568-50551587 None:intergenic 55.0%
TGTGGAAGACTCCAGCTGAG+AGG + chr7_4:50552883-50552902 Msa1160560:CDS 55.0%
GCTGAAGACGCTCTTTCCCA+AGG + chr7_4:50553173-50553192 Msa1160560:CDS 55.0%
GCTGCAATGCGTCCATTCCT+TGG - chr7_4:50553193-50553212 None:intergenic 55.0%
!! CCAGAAGCACCTGATGGGTT+GGG - chr7_4:50553248-50553267 None:intergenic 55.0%
!! TCCAGAAGCACCTGATGGGT+TGG - chr7_4:50553249-50553268 None:intergenic 55.0%
GGGACAAATGGCTATGGCCA+TGG + chr7_4:50553286-50553305 Msa1160560:CDS 55.0%
GCTATGGCCATGGGAAAGCT+TGG + chr7_4:50553296-50553315 Msa1160560:CDS 55.0%
CGGACACGCCTCCAAAAAGA+AGG - chr7_4:50553379-50553398 None:intergenic 55.0%
! GTTGCAACGTTTGCTGCCTC+AGG - chr7_4:50553737-50553756 None:intergenic 55.0%
! TCTATGGCTTGCACGGCCAA+GGG + chr7_4:50553845-50553864 Msa1160560:CDS 55.0%
TCCTCCACATACTGCTGGTG+TGG + chr7_4:50553998-50554017 Msa1160560:three_prime_UTR 55.0%
ACCACACCAGCAGTATGTGG+AGG - chr7_4:50554002-50554021 None:intergenic 55.0%
CTGGCGGCCATCGTGAGAAT+TGG + chr7_4:50551352-50551371 Msa1160560:CDS 60.0%
GGCGGCCATCGTGAGAATTG+GGG + chr7_4:50551354-50551373 Msa1160560:CDS 60.0%
GGGAGAGTCCAACATGGCTG+AGG + chr7_4:50551374-50551393 Msa1160560:CDS 60.0%
AGCGCTTCCCTCAGCCATGT+TGG - chr7_4:50551385-50551404 None:intergenic 60.0%
CTGCCAGGAAAAGCCGACTG+AGG + chr7_4:50551719-50551738 Msa1160560:CDS 60.0%
CCCAACCCATCAGGTGCTTC+TGG + chr7_4:50553245-50553264 Msa1160560:CDS 60.0%
AGAACTCAGAGCTCGCAGCC+GGG - chr7_4:50553826-50553845 None:intergenic 60.0%
GAGAACTCAGAGCTCGCAGC+CGG - chr7_4:50553827-50553846 None:intergenic 60.0%
! CTCTATGGCTTGCACGGCCA+AGG + chr7_4:50553844-50553863 Msa1160560:CDS 60.0%
GCTACAGCGAGCACGCCAGC+AGG + chr7_4:50551905-50551924 Msa1160560:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 50549208 50554499 50549208 ID=Msa1160560;Name=Msa1160560
chr7_4 mRNA 50549208 50554499 50549208 ID=Msa1160560-mRNA-1;Parent=Msa1160560;Name=Msa1160560-mRNA-1;_AED=0.08;_eAED=0.08;_QI=157|1|1|1|0.90|0.83|12|627|452
chr7_4 exon 50549208 50549307 50549208 ID=Msa1160560-mRNA-1:exon:14077;Parent=Msa1160560-mRNA-1
chr7_4 exon 50549736 50549875 50549736 ID=Msa1160560-mRNA-1:exon:14078;Parent=Msa1160560-mRNA-1
chr7_4 exon 50550660 50550763 50550660 ID=Msa1160560-mRNA-1:exon:14079;Parent=Msa1160560-mRNA-1
chr7_4 exon 50551088 50551161 50551088 ID=Msa1160560-mRNA-1:exon:14080;Parent=Msa1160560-mRNA-1
chr7_4 exon 50551255 50551443 50551255 ID=Msa1160560-mRNA-1:exon:14081;Parent=Msa1160560-mRNA-1
chr7_4 exon 50551565 50551615 50551565 ID=Msa1160560-mRNA-1:exon:14082;Parent=Msa1160560-mRNA-1
chr7_4 exon 50551688 50551747 50551688 ID=Msa1160560-mRNA-1:exon:14083;Parent=Msa1160560-mRNA-1
chr7_4 exon 50551849 50551926 50551849 ID=Msa1160560-mRNA-1:exon:14084;Parent=Msa1160560-mRNA-1
chr7_4 exon 50552046 50552097 50552046 ID=Msa1160560-mRNA-1:exon:14085;Parent=Msa1160560-mRNA-1
chr7_4 exon 50552679 50552950 50552679 ID=Msa1160560-mRNA-1:exon:14086;Parent=Msa1160560-mRNA-1
chr7_4 exon 50553095 50553343 50553095 ID=Msa1160560-mRNA-1:exon:14087;Parent=Msa1160560-mRNA-1
chr7_4 exon 50553726 50554499 50553726 ID=Msa1160560-mRNA-1:exon:14088;Parent=Msa1160560-mRNA-1
chr7_4 five_prime_UTR 50549208 50549307 50549208 ID=Msa1160560-mRNA-1:five_prime_utr;Parent=Msa1160560-mRNA-1
chr7_4 five_prime_UTR 50549736 50549792 50549736 ID=Msa1160560-mRNA-1:five_prime_utr;Parent=Msa1160560-mRNA-1
chr7_4 CDS 50549793 50549875 50549793 ID=Msa1160560-mRNA-1:cds;Parent=Msa1160560-mRNA-1
chr7_4 CDS 50550660 50550763 50550660 ID=Msa1160560-mRNA-1:cds;Parent=Msa1160560-mRNA-1
chr7_4 CDS 50551088 50551161 50551088 ID=Msa1160560-mRNA-1:cds;Parent=Msa1160560-mRNA-1
chr7_4 CDS 50551255 50551443 50551255 ID=Msa1160560-mRNA-1:cds;Parent=Msa1160560-mRNA-1
chr7_4 CDS 50551565 50551615 50551565 ID=Msa1160560-mRNA-1:cds;Parent=Msa1160560-mRNA-1
chr7_4 CDS 50551688 50551747 50551688 ID=Msa1160560-mRNA-1:cds;Parent=Msa1160560-mRNA-1
chr7_4 CDS 50551849 50551926 50551849 ID=Msa1160560-mRNA-1:cds;Parent=Msa1160560-mRNA-1
chr7_4 CDS 50552046 50552097 50552046 ID=Msa1160560-mRNA-1:cds;Parent=Msa1160560-mRNA-1
chr7_4 CDS 50552679 50552950 50552679 ID=Msa1160560-mRNA-1:cds;Parent=Msa1160560-mRNA-1
chr7_4 CDS 50553095 50553343 50553095 ID=Msa1160560-mRNA-1:cds;Parent=Msa1160560-mRNA-1
chr7_4 CDS 50553726 50553872 50553726 ID=Msa1160560-mRNA-1:cds;Parent=Msa1160560-mRNA-1
chr7_4 three_prime_UTR 50553873 50554499 50553873 ID=Msa1160560-mRNA-1:three_prime_utr;Parent=Msa1160560-mRNA-1
Gene Sequence

>Msa1160560

ATGGGCAGTAGAGGTAGAGCTGCTGAGGACACTAACAAGGTTGTTAACGGGATGCCGAGCTACGCACCTCCATCTAATTCCATGGGCATGGAGGGAACTAATATTCATCCTTCTCGAATTTCTGATTTTGGAGCCCTTGAACAATCTCTAGGATTTCGTGTTGAGGATGCCATGAATCTTAGCAGAAATCCAGTGTTTAATCAAATGAAAGCAAATAGCCAAGCTTTAGGTGCTGATATTCAATTTGGTGCTTTAAGTAAGTCCATTGCAAACTCGGATATAAACCTCTCTGCTGCAATTGCTGGGTCTCAGACATTGCAATTACAAAAAGACGCGCTGCCAAATTTGGCTTCAACATCTGGCGGCCATCGTGAGAATTGGGGAGAGTCCAACATGGCTGAGGGAAGCGCTGATACTTCAACAGATGATACAGAAGACAAGAATCAAATGCCTGAAAGGGGGGAATCCAGTGAAAGATCAAAAGACAAATCGGATCAAAAGACGTTAAGACGGCTGGCTCAAAATCGTGAAGCTGCCAGGAAAAGCCGACTGAGGAAAAAGGCATATGTGCAACAATTAGAGAGCAGCAGGCTGAAACTAACCCAACTAGAGCAAGAGCTACAGCGAGCACGCCAGCAGGGAATATTTATTTCAAGTACTGGAGAGCAGACCCATTCAATGAGTGGAAATGGTGCAATGGCATTTGATGCAGAATACGCACGATGGTTAGAAGAGCATAATAGGCAAACCAATGAACTAAGGGCTGCAATAAATTCTCATGCTGGGGATATTGAACTCCGTACCATTGTCGACAATTTCATGACTCAATTTGAAGATATCTACAGGCTGAAAGGTGTTGCAGCAAAAGCTGATGTTTTCCACATTCTATCAGGAATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGGTCATCTGAACTTCTTAAGCTTCTTGTAAGTCATTTGGAGCCTTTAACTGAACAACAGTTGATGGGTATCTACAACTTGCAACAGTCATCTCAACAAGCTGAAGACGCTCTTTCCCAAGGAATGGACGCATTGCAGCAATCACTTTCCGAGACATTGGCTAATGGTTCACCCAACCCATCAGGTGCTTCTGGAAATGTGGCCAATTACATGGGACAAATGGCTATGGCCATGGGAAAGCTTGGTACTCTTGAGGGATTTCTTCGCCAGGCTGATAACCTGAGGCAGCAAACGTTGCAACAAATGCTTCGGATATTAACAACCAGACAATCAGCTCGAGCTCTTCTCGCAATAAGTGATTATTTCTCCCGGCTGCGAGCTCTGAGTTCTCTATGGCTTGCACGGCCAAGGGAGTAA

Protein sequence

>Msa1160560

MGSRGRAAEDTNKVVNGMPSYAPPSNSMGMEGTNIHPSRISDFGALEQSLGFRVEDAMNLSRNPVFNQMKANSQALGADIQFGALSKSIANSDINLSAAIAGSQTLQLQKDALPNLASTSGGHRENWGESNMAEGSADTSTDDTEDKNQMPERGESSERSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGEQTHSMSGNGAMAFDAEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMTQFEDIYRLKGVAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVSHLEPLTEQQLMGIYNLQQSSQQAEDALSQGMDALQQSLSETLANGSPNPSGASGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE*