AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1013970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1013970 MtrunA17_Chr2g0277111 82.203 354 52 3 45 390 157 507 0.0 593
Msa1013970 MtrunA17_Chr2g0309651 46.178 314 152 7 34 340 251 554 2.56e-87 275
Msa1013970 MtrunA17_Chr4g0069011 63.441 186 68 0 145 330 315 500 3.81e-80 258
Msa1013970 MtrunA17_Chr2g0293641 55.111 225 94 2 113 330 310 534 1.89e-78 255
Msa1013970 MtrunA17_Chr4g0000071 44.599 287 140 5 114 385 341 623 2.10e-73 240
Msa1013970 MtrunA17_Chr7g0253191 40.805 348 151 11 64 384 331 650 1.81e-71 236
Msa1013970 MtrunA17_Chr6g0461531 54.255 188 82 1 147 334 400 583 2.30e-68 228
Msa1013970 MtrunA17_Chr8g0380431 59.091 154 59 1 138 291 397 546 1.18e-57 197
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1013970 AT1G09810.2 52.075 265 114 4 109 370 133 387 1.51e-87 271
Msa1013970 AT1G09810.3 52.075 265 114 4 109 370 156 410 2.07e-87 272
Msa1013970 AT1G09810.1 58.222 225 91 2 109 330 175 399 2.10e-87 273
Msa1013970 AT1G79270.2 62.766 188 70 0 144 331 288 475 1.47e-84 266
Msa1013970 AT1G79270.4 62.766 188 70 0 144 331 288 475 1.47e-84 266
Msa1013970 AT1G79270.3 62.766 188 70 0 144 331 288 475 1.47e-84 266
Msa1013970 AT1G79270.1 62.766 188 70 0 144 331 303 490 2.35e-84 266
Msa1013970 AT3G17330.2 58.639 191 79 0 140 330 146 336 5.89e-78 249
Msa1013970 AT1G48110.2 58.639 191 79 0 140 330 299 489 9.59e-77 249
Msa1013970 AT1G48110.1 58.639 191 79 0 140 330 299 489 9.59e-77 249
Msa1013970 AT3G17330.1 58.639 191 79 0 140 330 248 438 1.16e-76 248
Msa1013970 AT3G17330.3 58.639 191 79 0 140 330 248 438 1.16e-76 248
Msa1013970 AT5G58190.2 51.339 224 93 4 121 336 276 491 1.19e-75 244
Msa1013970 AT5G58190.1 51.339 224 93 4 121 336 275 490 1.53e-75 243
Msa1013970 AT3G13060.3 47.809 251 113 3 114 354 322 564 3.02e-74 242
Msa1013970 AT3G13060.6 47.809 251 113 3 114 354 322 564 3.02e-74 242
Msa1013970 AT3G13060.2 47.809 251 113 3 114 354 344 586 3.37e-74 243
Msa1013970 AT3G13060.4 47.809 251 113 3 114 354 334 576 3.69e-74 243
Msa1013970 AT3G03950.3 50.000 232 106 4 108 334 187 413 4.02e-74 237
Msa1013970 AT3G03950.2 50.000 232 106 4 108 334 183 409 4.19e-74 237
Msa1013970 AT3G03950.1 50.000 232 106 4 108 334 184 410 5.45e-74 236
Msa1013970 AT5G61020.2 48.739 238 102 3 108 330 191 423 2.35e-73 237
Msa1013970 AT5G61020.1 48.739 238 102 3 108 330 193 425 2.58e-73 237
Msa1013970 AT1G55500.1 53.555 211 88 2 114 324 316 516 2.63e-73 238
Msa1013970 AT1G55500.6 53.555 211 88 2 114 324 329 529 3.73e-73 238
Msa1013970 AT1G55500.3 53.555 211 88 2 114 324 359 559 3.87e-73 239
Msa1013970 AT1G55500.4 53.182 220 86 4 118 324 357 572 3.87e-73 239
Msa1013970 AT1G55500.2 53.182 220 86 4 118 324 357 572 3.92e-73 239
Msa1013970 AT3G13460.2 48.347 242 103 3 118 341 377 614 3.97e-73 241
Msa1013970 AT3G13460.4 48.347 242 103 3 118 341 379 616 3.99e-73 241
Msa1013970 AT3G13460.1 48.347 242 103 3 118 341 380 617 4.11e-73 241
Msa1013970 AT1G55500.5 53.182 220 86 4 118 324 357 572 4.50e-73 239
Msa1013970 AT1G27960.3 49.515 206 93 3 118 323 219 413 2.70e-65 215
Msa1013970 AT1G27960.1 49.515 206 93 3 118 323 293 487 1.33e-64 215
Msa1013970 AT3G13060.1 49.468 188 77 3 114 291 344 523 6.30e-55 190
Msa1013970 AT3G13460.3 50.000 92 38 2 133 220 409 496 2.04e-19 90.5
Msa1013970 AT3G13060.5 37.607 117 55 3 114 220 344 452 1.48e-15 78.6
Msa1013970 AT1G27960.2 36.290 124 68 3 118 241 293 405 7.70e-15 76.3
Msa1013970 AT4G11970.5 26.840 231 135 6 103 313 1 217 6.48e-14 73.2
Msa1013970 AT4G11970.2 26.957 230 134 6 105 314 3 218 7.29e-14 72.8
Msa1013970 AT4G11970.3 26.957 230 134 6 105 314 3 218 9.57e-14 72.4
Msa1013970 AT4G11970.1 26.957 230 134 6 105 314 3 218 5.04e-13 70.5
Msa1013970 AT4G11970.4 26.957 230 134 6 105 314 3 218 5.04e-13 70.5

Find 85 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATTATATGCCACTTAAT+TGG 0.122163 7_1:+21559911 None:intergenic
AGATCAAACCAAGAGATATT+TGG 0.251737 7_1:-21558998 Msa1013970:three_prime_UTR
TTGATTTAGCTTCTGCGTTT+TGG 0.256390 7_1:+21560330 None:intergenic
AAATTTATAATAACAATTCT+AGG 0.261214 7_1:+21561934 None:intergenic
TACTTGAGTCAATCAGATTA+AGG 0.280024 7_1:-21559106 Msa1013970:three_prime_UTR
TAGCAGTTTCATATTTAGTT+TGG 0.294839 7_1:+21560459 None:intergenic
CCCAATCTTCCTCTTCTTCT+CGG 0.317116 7_1:-21560288 Msa1013970:intron
TCATATTTAGTTTGGAAATC+TGG 0.320309 7_1:+21560467 None:intergenic
TCTTTCACAATACTAATTAC+AGG 0.330280 7_1:-21560694 Msa1013970:CDS
TCCTTAACAACTGATGATTC+CGG 0.338646 7_1:+21560530 None:intergenic
AGGGAATAAAATATGATGTT+TGG 0.357963 7_1:-21560394 Msa1013970:CDS
ACCTGTTCTCATTGTTTGTA+AGG 0.359165 7_1:+21559855 None:intergenic
TTATTATATGCCACTTAATT+GGG 0.372548 7_1:+21559912 None:intergenic
TTGTGAAAGACATGGCTTCT+TGG 0.385400 7_1:+21560707 None:intergenic
TCTCTGCTACTCCAACAAAT+TGG 0.385829 7_1:+21560002 None:intergenic
TATGCTGCTCGGTAATCCTC+TGG 0.390833 7_1:+21559585 None:intergenic
TCATTAGATACTATACCATT+TGG 0.393991 7_1:+21560647 None:intergenic
CCTTAACAACTGATGATTCC+GGG 0.395222 7_1:+21560531 None:intergenic
ATGTCGAAGCATTTCGTGTT+TGG 0.395427 7_1:+21560738 None:intergenic
TGTGAAAGACATGGCTTCTT+GGG 0.396327 7_1:+21560708 None:intergenic
CCCGGAATCATCAGTTGTTA+AGG 0.398116 7_1:-21560531 Msa1013970:CDS
ACCGAGAAGAAGAGGAAGAT+TGG 0.402582 7_1:+21560287 None:intergenic
AATGCAAGTGGCCAATTTGT+TGG 0.419888 7_1:-21560013 Msa1013970:CDS
CAATGAAGATCACATTCAAA+AGG 0.420815 7_1:-21560414 Msa1013970:CDS
TCAGGCAAAGACATCTCTAT+TGG 0.426726 7_1:-21559651 Msa1013970:CDS
ATTGTAAACCAAATATCTCT+TGG 0.430496 7_1:+21558990 None:intergenic
GATTGGACTAAAAGATGGTC+TGG 0.434011 7_1:-21559699 Msa1013970:CDS
CTAGTTCAGTCATGGTTGAA+TGG 0.439966 7_1:+21558953 None:intergenic
GTTGTAAGTTCTTCGAGGGT+CGG 0.440776 7_1:+21560760 None:intergenic
TCAGTACTATCAAAACTTGT+CGG 0.441080 7_1:-21559021 Msa1013970:three_prime_UTR
TTTGATCAGCGTCTCATGAT+TGG 0.450002 7_1:+21559300 None:intergenic
CCGAGAAGAAGAGGAAGATT+GGG 0.454266 7_1:+21560288 None:intergenic
CTGTAGTTAGTAGAGGCACT+TGG 0.483395 7_1:+21560671 None:intergenic
AATCTCTCTCTCACTCCCTC+TGG 0.485346 7_1:-21559268 Msa1013970:CDS
TCCTTACAAACAATGAGAAC+AGG 0.488032 7_1:-21559856 Msa1013970:CDS
AAGAAATGACTCGGGGTCCT+CGG 0.496517 7_1:-21560574 Msa1013970:CDS
TTTGTCATCTAGTTCAGTCA+TGG 0.498391 7_1:+21558945 None:intergenic
CTCACTCCCTCTGGAAGACA+TGG 0.499578 7_1:-21559259 Msa1013970:CDS
CGGCTGCTGTAAAATTAGAA+TGG 0.501961 7_1:+21560780 None:intergenic
AATGAAGATCACATTCAAAA+GGG 0.506544 7_1:-21560413 Msa1013970:CDS
TCTACTAACTACAGACCAAA+TGG 0.507075 7_1:-21560662 Msa1013970:CDS
ACGGATTCTTCCCAATTAAG+TGG 0.508762 7_1:-21559922 Msa1013970:CDS
TTGCAGATTGGACTAAAAGA+TGG 0.509143 7_1:-21559704 Msa1013970:intron
GTTGGAGTAGCAGAGATGCT+AGG 0.509883 7_1:-21559995 Msa1013970:CDS
TTTGGTTGTAAGTTCTTCGA+GGG 0.514819 7_1:+21560756 None:intergenic
GTTTGGTTGTAAGTTCTTCG+AGG 0.516731 7_1:+21560755 None:intergenic
TTGAACTCACCGAGAAGAAG+AGG 0.527322 7_1:+21560279 None:intergenic
TTGGAGTAGCAGAGATGCTA+GGG 0.531951 7_1:-21559994 Msa1013970:CDS
GAAGCTAAATCAAGTGAGAC+AGG 0.536998 7_1:-21560320 Msa1013970:CDS
GATCAGCGTCTCATGATTGG+TGG 0.541226 7_1:+21559303 None:intergenic
ATGTGTCGAAACAAACAGTT+GGG 0.547018 7_1:+21559881 None:intergenic
AGGATTACCGAGCAGCATAC+AGG 0.552460 7_1:-21559581 Msa1013970:CDS
AGCAGAGATGCTAGGGCCGG+TGG 0.553830 7_1:-21559987 Msa1013970:CDS
AAAGACATGGCTTCTTGGGT+TGG 0.559310 7_1:+21560712 None:intergenic
AAGTGTCAAAAGAAATGACT+CGG 0.565132 7_1:-21560583 Msa1013970:CDS
ACAGGTGTGTAACTTTCAGT+AGG 0.575402 7_1:-21559838 Msa1013970:CDS
ATGCTGCTCGGTAATCCTCT+GGG 0.580878 7_1:+21559586 None:intergenic
GATGTGTCGAAACAAACAGT+TGG 0.582692 7_1:+21559880 None:intergenic
AGTACTGAGAAATATATACA+TGG 0.583571 7_1:+21559036 None:intergenic
ATTTAGTTTGGAAATCTGGA+AGG 0.584834 7_1:+21560471 None:intergenic
TCTAAAGCCATGTCTTCCAG+AGG 0.588899 7_1:+21559252 None:intergenic
ATTTGGTCTGTAGTTAGTAG+AGG 0.589027 7_1:+21560664 None:intergenic
TGGAAACTTGACAAATACAA+CGG 0.589722 7_1:-21559941 Msa1013970:CDS
AAAACAGATATGCAATCAAG+TGG 0.597901 7_1:-21559328 Msa1013970:CDS
GCAGAAGAACAAGGCAGATG+TGG 0.598529 7_1:-21561051 Msa1013970:intron
AACAACTGATGATTCCGGGT+TGG 0.603971 7_1:+21560535 None:intergenic
TGTCGTGCCTGTATGCTGCT+CGG 0.604290 7_1:+21559574 None:intergenic
AGTGTCAAAAGAAATGACTC+GGG 0.607102 7_1:-21560582 Msa1013970:CDS
ATTAATCAGGTAAATGCAAG+TGG 0.607713 7_1:-21560025 Msa1013970:intron
TCATAGTCAGCAGAAGAACA+AGG 0.611480 7_1:-21561060 Msa1013970:CDS
AATTAGTATTGTGAAAGACA+TGG 0.624561 7_1:+21560699 None:intergenic
AACGCTGACTGTGTAGCAGA+GGG 0.626597 7_1:+21561804 None:intergenic
TTCAACTTCTTATTTCCATG+TGG 0.626711 7_1:+21560362 None:intergenic
AGTAGCAGAGATGCTAGGGC+CGG 0.626729 7_1:-21559990 Msa1013970:CDS
TAACGCTGACTGTGTAGCAG+AGG 0.627646 7_1:+21561803 None:intergenic
CAGGTGTGTAACTTTCAGTA+GGG 0.627821 7_1:-21559837 Msa1013970:CDS
GTTTGGACAAGCACTCCACA+TGG 0.628206 7_1:-21560377 Msa1013970:CDS
CTAAAGCCATGTCTTCCAGA+GGG 0.641953 7_1:+21559253 None:intergenic
TTTCAGTAGGGACACACAAG+AGG 0.654133 7_1:-21559825 Msa1013970:intron
AGAAGTTATTTCGTTCCCAG+AGG 0.656111 7_1:-21559601 Msa1013970:CDS
AGACGCTGATCAAACTAACA+AGG 0.658325 7_1:-21559291 Msa1013970:CDS
TCATCAAAACAATTCCAACC+CGG 0.676336 7_1:-21560549 Msa1013970:CDS
GTACTGAGAAATATATACAT+GGG 0.677984 7_1:+21559037 None:intergenic
GTGTCAAAAGAAATGACTCG+GGG 0.701528 7_1:-21560581 Msa1013970:CDS
GTAAAATTAGAATGGAAACG+AGG 0.766321 7_1:+21560788 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTATAATAACAATTCT+AGG + chr7_1:21558950-21558969 None:intergenic 10.0%
!!! TTATTTTTATGTTTTTCATA+TGG - chr7_1:21559740-21559759 Msa1013970:intron 10.0%
!!! TCAATATAATATTTAAGACA+TGG + chr7_1:21559171-21559190 None:intergenic 15.0%
!!! TAAATACAAAGTAATGTTTT+TGG + chr7_1:21559199-21559218 None:intergenic 15.0%
!! AAAAATATTCAAAAGTTATC+AGG - chr7_1:21561212-21561231 Msa1013970:intron 15.0%
!!! TTAATTGGTTTCTCTTTTAT+TGG - chr7_1:21559715-21559734 Msa1013970:intron 20.0%
!! ACTTAAGATATTGATATTGT+TGG - chr7_1:21560681-21560700 Msa1013970:CDS 20.0%
!! GATGAACATTCTTTATAATA+TGG - chr7_1:21560753-21560772 Msa1013970:CDS 20.0%
!!! TATTTGTTGTCAAATTAATC+AGG - chr7_1:21560843-21560862 Msa1013970:intron 20.0%
!!! TCAAAAAAGACATGAAATTT+TGG - chr7_1:21560920-21560939 Msa1013970:intron 20.0%
!!! TTATTATATGCCACTTAATT+GGG + chr7_1:21560972-21560991 None:intergenic 20.0%
!!! TTTATTATATGCCACTTAAT+TGG + chr7_1:21560973-21560992 None:intergenic 20.0%
!! TTATCAAACCACAAAAAATT+TGG + chr7_1:21561700-21561719 None:intergenic 20.0%
! ATTTGTATGCATATTGTTCT+TGG - chr7_1:21559267-21559286 Msa1013970:CDS 25.0%
! TAAAATCCTCCTATATATAG+GGG + chr7_1:21559358-21559377 None:intergenic 25.0%
! CTAAAATCCTCCTATATATA+GGG + chr7_1:21559359-21559378 None:intergenic 25.0%
! AATCTTTCATTTGTCTGAAA+TGG - chr7_1:21559655-21559674 Msa1013970:CDS 25.0%
! TATTTCCTAAAGAGATGAAA+GGG + chr7_1:21559946-21559965 None:intergenic 25.0%
! TTATTTCCTAAAGAGATGAA+AGG + chr7_1:21559947-21559966 None:intergenic 25.0%
! AACAACAATGACATTTCTAT+CGG + chr7_1:21559985-21560004 None:intergenic 25.0%
! GATTACAAAATGCATTGTTT+AGG - chr7_1:21560008-21560027 Msa1013970:CDS 25.0%
! AATTAGTATTGTGAAAGACA+TGG + chr7_1:21560185-21560204 None:intergenic 25.0%
! TCTTTCACAATACTAATTAC+AGG - chr7_1:21560187-21560206 Msa1013970:intron 25.0%
! TCATTAGATACTATACCATT+TGG + chr7_1:21560237-21560256 None:intergenic 25.0%
!!! TCATATTTAGTTTGGAAATC+TGG + chr7_1:21560417-21560436 None:intergenic 25.0%
! TAGCAGTTTCATATTTAGTT+TGG + chr7_1:21560425-21560444 None:intergenic 25.0%
! AATGAAGATCACATTCAAAA+GGG - chr7_1:21560468-21560487 Msa1013970:CDS 25.0%
! AGGGAATAAAATATGATGTT+TGG - chr7_1:21560487-21560506 Msa1013970:CDS 25.0%
!!! GCCATTTTTTTAATACAAGA+TGG - chr7_1:21560648-21560667 Msa1013970:CDS 25.0%
! GCCATCTTGTATTAAAAAAA+TGG + chr7_1:21560652-21560671 None:intergenic 25.0%
! TAAGATATTGATATTGTTGG+AGG - chr7_1:21560684-21560703 Msa1013970:CDS 25.0%
!! TATAATATGGTGTCAATGAT+TGG - chr7_1:21560766-21560785 Msa1013970:CDS 25.0%
!!! ACTAGTTTTTAAATGTAGGA+AGG + chr7_1:21560805-21560824 None:intergenic 25.0%
! TTCCTACATTTAAAAACTAG+TGG - chr7_1:21560804-21560823 Msa1013970:intron 25.0%
!!! AACCACTAGTTTTTAAATGT+AGG + chr7_1:21560809-21560828 None:intergenic 25.0%
! ACCAAGAAAATACCAAAAAA+TGG - chr7_1:21561670-21561689 Msa1013970:intron 25.0%
!!! TCCATTTTTTGGTATTTTCT+TGG + chr7_1:21561674-21561693 None:intergenic 25.0%
!!! AAATTTGGTCATCCATTTTT+TGG + chr7_1:21561685-21561704 None:intergenic 25.0%
! GTACTGAGAAATATATACAT+GGG + chr7_1:21561847-21561866 None:intergenic 25.0%
!! AGTACTGAGAAATATATACA+TGG + chr7_1:21561848-21561867 None:intergenic 25.0%
! ATTGTAAACCAAATATCTCT+TGG + chr7_1:21561894-21561913 None:intergenic 25.0%
CCTAAAATCCTCCTATATAT+AGG + chr7_1:21559360-21559379 None:intergenic 30.0%
! CCTATATATAGGAGGATTTT+AGG - chr7_1:21559357-21559376 Msa1013970:intron 30.0%
ATTAAGAGTCCAAATAAGAC+TGG + chr7_1:21559552-21559571 None:intergenic 30.0%
TATTTGAACGCTCATTTAAG+TGG - chr7_1:21559619-21559638 Msa1013970:CDS 30.0%
ATAGATTGAGCTATATCACA+TGG + chr7_1:21559783-21559802 None:intergenic 30.0%
! CAAAATGCATTGTTTAGGTT+TGG - chr7_1:21560013-21560032 Msa1013970:CDS 30.0%
!!! AAGTGAATGTGTTATTTTGC+AGG - chr7_1:21560068-21560087 Msa1013970:intron 30.0%
GTAAAATTAGAATGGAAACG+AGG + chr7_1:21560096-21560115 None:intergenic 30.0%
AAGTGTCAAAAGAAATGACT+CGG - chr7_1:21560298-21560317 Msa1013970:CDS 30.0%
!! ATTTAGTTTGGAAATCTGGA+AGG + chr7_1:21560413-21560432 None:intergenic 30.0%
CAATGAAGATCACATTCAAA+AGG - chr7_1:21560467-21560486 Msa1013970:CDS 30.0%
! TTCAACTTCTTATTTCCATG+TGG + chr7_1:21560522-21560541 None:intergenic 30.0%
ATTAATCAGGTAAATGCAAG+TGG - chr7_1:21560856-21560875 Msa1013970:intron 30.0%
TGGAAACTTGACAAATACAA+CGG - chr7_1:21560940-21560959 Msa1013970:intron 30.0%
CAAAGGAAATAGAACTTACA+TGG + chr7_1:21561359-21561378 None:intergenic 30.0%
! TATTCAAGTGTTCTAGACAA+AGG + chr7_1:21561376-21561395 None:intergenic 30.0%
AAAACAGATATGCAATCAAG+TGG - chr7_1:21561553-21561572 Msa1013970:intron 30.0%
! TTTGGTATTTTCTTGGTCTA+TGG + chr7_1:21561667-21561686 None:intergenic 30.0%
!!! ATGGATGACCAAATTTTTTG+TGG - chr7_1:21561689-21561708 Msa1013970:intron 30.0%
TACTTGAGTCAATCAGATTA+AGG - chr7_1:21561775-21561794 Msa1013970:intron 30.0%
TCAGTACTATCAAAACTTGT+CGG - chr7_1:21561860-21561879 Msa1013970:five_prime_UTR 30.0%
AGATCAAACCAAGAGATATT+TGG - chr7_1:21561883-21561902 Msa1013970:five_prime_UTR 30.0%
TAGTAACCCCTATATATAGG+AGG - chr7_1:21559349-21559368 Msa1013970:CDS 35.0%
ACTTATACACTCCTAACTTG+GGG + chr7_1:21559398-21559417 None:intergenic 35.0%
GACTTATACACTCCTAACTT+GGG + chr7_1:21559399-21559418 None:intergenic 35.0%
AGACTTATACACTCCTAACT+TGG + chr7_1:21559400-21559419 None:intergenic 35.0%
! AGTTAGGAGTGTATAAGTCT+CGG - chr7_1:21559400-21559419 Msa1013970:intron 35.0%
CAAAAGAATTCCATCCTTTC+AGG + chr7_1:21559510-21559529 None:intergenic 35.0%
CTCATTTAAGTGGAAGAAGA+CGG - chr7_1:21559629-21559648 Msa1013970:CDS 35.0%
TCATTTAAGTGGAAGAAGAC+GGG - chr7_1:21559630-21559649 Msa1013970:CDS 35.0%
CCAATTAAAACCACGTTGAA+GGG + chr7_1:21559703-21559722 None:intergenic 35.0%
ACCAATTAAAACCACGTTGA+AGG + chr7_1:21559704-21559723 None:intergenic 35.0%
CTTGACTCTCTCTATGAATT+TGG - chr7_1:21559881-21559900 Msa1013970:CDS 35.0%
TTAGACCCTTTCATCTCTTT+AGG - chr7_1:21559938-21559957 Msa1013970:CDS 35.0%
! AATGCATTGTTTAGGTTTGG+TGG - chr7_1:21560016-21560035 Msa1013970:CDS 35.0%
TTTGGTTGTAAGTTCTTCGA+GGG + chr7_1:21560128-21560147 None:intergenic 35.0%
ATTTGGTCTGTAGTTAGTAG+AGG + chr7_1:21560220-21560239 None:intergenic 35.0%
TCTACTAACTACAGACCAAA+TGG - chr7_1:21560219-21560238 Msa1013970:intron 35.0%
AGTGTCAAAAGAAATGACTC+GGG - chr7_1:21560299-21560318 Msa1013970:CDS 35.0%
!!! GAATTGTTTTGATGAAACCG+AGG + chr7_1:21560327-21560346 None:intergenic 35.0%
TCATCAAAACAATTCCAACC+CGG - chr7_1:21560332-21560351 Msa1013970:CDS 35.0%
TCCTTAACAACTGATGATTC+CGG + chr7_1:21560354-21560373 None:intergenic 35.0%
!! TTGATTTAGCTTCTGCGTTT+TGG + chr7_1:21560554-21560573 None:intergenic 35.0%
AAAAATGGCAAGCGAAAACT+TGG + chr7_1:21560637-21560656 None:intergenic 35.0%
!!! ATGTCTTTTTTGAAGTCCAC+CGG + chr7_1:21560913-21560932 None:intergenic 35.0%
ATGTGTCGAAACAAACAGTT+GGG + chr7_1:21561003-21561022 None:intergenic 35.0%
TCCTTACAAACAATGAGAAC+AGG - chr7_1:21561025-21561044 Msa1013970:intron 35.0%
ACCTGTTCTCATTGTTTGTA+AGG + chr7_1:21561029-21561048 None:intergenic 35.0%
! TTCATCTTTTATAGAGTCCG+AGG - chr7_1:21561111-21561130 Msa1013970:intron 35.0%
! TCATCTTTTATAGAGTCCGA+GGG - chr7_1:21561112-21561131 Msa1013970:intron 35.0%
TTGCAGATTGGACTAAAAGA+TGG - chr7_1:21561177-21561196 Msa1013970:intron 35.0%
! TTTTCTGCAGAACACTATGA+AGG - chr7_1:21561519-21561538 Msa1013970:intron 35.0%
! TTTGTCATCTAGTTCAGTCA+TGG + chr7_1:21561939-21561958 None:intergenic 35.0%
ACTAGTGAACGACTCATTGT+TGG + chr7_1:21559311-21559330 None:intergenic 40.0%
GTTCACTAGTCATTGTGTGT+TGG - chr7_1:21559321-21559340 Msa1013970:CDS 40.0%
! ACTAGTCATTGTGTGTTGGT+TGG - chr7_1:21559325-21559344 Msa1013970:CDS 40.0%
GGCTAGTAACCCCTATATAT+AGG - chr7_1:21559346-21559365 Msa1013970:CDS 40.0%
TTTACCTTGTTCCCCAAGTT+AGG - chr7_1:21559384-21559403 Msa1013970:intron 40.0%
AGTGTATAAGTCTCGGATGA+TGG - chr7_1:21559407-21559426 Msa1013970:intron 40.0%
GTGTATAAGTCTCGGATGAT+GGG - chr7_1:21559408-21559427 Msa1013970:intron 40.0%
!! GGATGATGGGTTCTTAAGTT+CGG - chr7_1:21559421-21559440 Msa1013970:intron 40.0%
TCATAATCGCCTAAGCCTAA+TGG + chr7_1:21559447-21559466 None:intergenic 40.0%
ATTAGGCTTAGGCGATTATG+AGG - chr7_1:21559446-21559465 Msa1013970:intron 40.0%
GAGTCCAAATAAGACTGGAA+GGG + chr7_1:21559547-21559566 None:intergenic 40.0%
AGAGTCCAAATAAGACTGGA+AGG + chr7_1:21559548-21559567 None:intergenic 40.0%
!!! CCCTTCAACGTGGTTTTAAT+TGG - chr7_1:21559700-21559719 Msa1013970:CDS 40.0%
TCATAGTCAGCAGAAGAACA+AGG - chr7_1:21559821-21559840 Msa1013970:intron 40.0%
GAGTCAAGAAAGTTGCCAAT+AGG + chr7_1:21559869-21559888 None:intergenic 40.0%
CGGCTGCTGTAAAATTAGAA+TGG + chr7_1:21560104-21560123 None:intergenic 40.0%
GTTTGGTTGTAAGTTCTTCG+AGG + chr7_1:21560129-21560148 None:intergenic 40.0%
! ATGTCGAAGCATTTCGTGTT+TGG + chr7_1:21560146-21560165 None:intergenic 40.0%
TGTGAAAGACATGGCTTCTT+GGG + chr7_1:21560176-21560195 None:intergenic 40.0%
TTGTGAAAGACATGGCTTCT+TGG + chr7_1:21560177-21560196 None:intergenic 40.0%
GTGTCAAAAGAAATGACTCG+GGG - chr7_1:21560300-21560319 Msa1013970:CDS 40.0%
CCTTAACAACTGATGATTCC+GGG + chr7_1:21560353-21560372 None:intergenic 40.0%
GAAGCTAAATCAAGTGAGAC+AGG - chr7_1:21560561-21560580 Msa1013970:CDS 40.0%
AATGCAAGTGGCCAATTTGT+TGG - chr7_1:21560868-21560887 Msa1013970:intron 40.0%
TCTCTGCTACTCCAACAAAT+TGG + chr7_1:21560882-21560901 None:intergenic 40.0%
ACGGATTCTTCCCAATTAAG+TGG - chr7_1:21560959-21560978 Msa1013970:intron 40.0%
GATGTGTCGAAACAAACAGT+TGG + chr7_1:21561004-21561023 None:intergenic 40.0%
ACAGGTGTGTAACTTTCAGT+AGG - chr7_1:21561043-21561062 Msa1013970:intron 40.0%
CAGGTGTGTAACTTTCAGTA+GGG - chr7_1:21561044-21561063 Msa1013970:intron 40.0%
GATTGGACTAAAAGATGGTC+TGG - chr7_1:21561182-21561201 Msa1013970:intron 40.0%
TCAGGCAAAGACATCTCTAT+TGG - chr7_1:21561230-21561249 Msa1013970:intron 40.0%
! AGAAGTTATTTCGTTCCCAG+AGG - chr7_1:21561280-21561299 Msa1013970:intron 40.0%
GAGAAGCTGATAAGTAGCTA+CGG + chr7_1:21561413-21561432 None:intergenic 40.0%
TTTGATCAGCGTCTCATGAT+TGG + chr7_1:21561584-21561603 None:intergenic 40.0%
AGACGCTGATCAAACTAACA+AGG - chr7_1:21561590-21561609 Msa1013970:intron 40.0%
CTAGTTCAGTCATGGTTGAA+TGG + chr7_1:21561931-21561950 None:intergenic 40.0%
! TGAACGACTCATTGTTGGCT+AGG + chr7_1:21559306-21559325 None:intergenic 45.0%
GGTTCTTAAGTTCGGCCATT+AGG - chr7_1:21559429-21559448 Msa1013970:intron 45.0%
TAAGTTCGGCCATTAGGCTT+AGG - chr7_1:21559435-21559454 Msa1013970:intron 45.0%
AGGCGATTATGAGGAGGATA+CGG - chr7_1:21559455-21559474 Msa1013970:intron 45.0%
TCCTTTCAGGCTTCATGCTT+GGG + chr7_1:21559497-21559516 None:intergenic 45.0%
ATCCTTTCAGGCTTCATGCT+TGG + chr7_1:21559498-21559517 None:intergenic 45.0%
AAGCATGAAGCCTGAAAGGA+TGG - chr7_1:21559497-21559516 Msa1013970:intron 45.0%
!! CATGCCCTTCCAGTCTTATT+TGG - chr7_1:21559540-21559559 Msa1013970:intron 45.0%
AATCAGTAGACCCTTCAACG+TGG - chr7_1:21559690-21559709 Msa1013970:CDS 45.0%
AACAAGGCAGATGTGGTATG+TGG - chr7_1:21559837-21559856 Msa1013970:CDS 45.0%
GTTGTAAGTTCTTCGAGGGT+CGG + chr7_1:21560124-21560143 None:intergenic 45.0%
AAAGACATGGCTTCTTGGGT+TGG + chr7_1:21560172-21560191 None:intergenic 45.0%
!! CTGTAGTTAGTAGAGGCACT+TGG + chr7_1:21560213-21560232 None:intergenic 45.0%
AACAACTGATGATTCCGGGT+TGG + chr7_1:21560349-21560368 None:intergenic 45.0%
CCCGGAATCATCAGTTGTTA+AGG - chr7_1:21560350-21560369 Msa1013970:CDS 45.0%
CCGAGAAGAAGAGGAAGATT+GGG + chr7_1:21560596-21560615 None:intergenic 45.0%
CCCAATCTTCCTCTTCTTCT+CGG - chr7_1:21560593-21560612 Msa1013970:CDS 45.0%
ACCGAGAAGAAGAGGAAGAT+TGG + chr7_1:21560597-21560616 None:intergenic 45.0%
TTGAACTCACCGAGAAGAAG+AGG + chr7_1:21560605-21560624 None:intergenic 45.0%
TTGGAGTAGCAGAGATGCTA+GGG - chr7_1:21560887-21560906 Msa1013970:intron 45.0%
TTTCAGTAGGGACACACAAG+AGG - chr7_1:21561056-21561075 Msa1013970:CDS 45.0%
TACGCGACAACTATATCCCT+CGG + chr7_1:21561131-21561150 None:intergenic 45.0%
! CGACACTCTTGTTTGCAGAT+TGG - chr7_1:21561165-21561184 Msa1013970:intron 45.0%
CTAAAGCCATGTCTTCCAGA+GGG + chr7_1:21561631-21561650 None:intergenic 45.0%
! TCTAAAGCCATGTCTTCCAG+AGG + chr7_1:21561632-21561651 None:intergenic 45.0%
! AACGCTGACTGTGTAGCAGA+GGG + chr7_1:21559080-21559099 None:intergenic 50.0%
! TAACGCTGACTGTGTAGCAG+AGG + chr7_1:21559081-21559100 None:intergenic 50.0%
CACTCCTAACTTGGGGAACA+AGG + chr7_1:21559391-21559410 None:intergenic 50.0%
AGGCTTAGGCGATTATGAGG+AGG - chr7_1:21559449-21559468 Msa1013970:intron 50.0%
GGCGATTATGAGGAGGATAC+GGG - chr7_1:21559456-21559475 Msa1013970:intron 50.0%
CTTTCAGGCTTCATGCTTGG+GGG + chr7_1:21559495-21559514 None:intergenic 50.0%
CCTTTCAGGCTTCATGCTTG+GGG + chr7_1:21559496-21559515 None:intergenic 50.0%
GCAGAAGAACAAGGCAGATG+TGG - chr7_1:21559830-21559849 Msa1013970:CDS 50.0%
GGTATGTGGTGACTGCCTAT+TGG - chr7_1:21559851-21559870 Msa1013970:CDS 50.0%
! AAGAAATGACTCGGGGTCCT+CGG - chr7_1:21560307-21560326 Msa1013970:CDS 50.0%
GTTTGGACAAGCACTCCACA+TGG - chr7_1:21560504-21560523 Msa1013970:CDS 50.0%
GTTGGAGTAGCAGAGATGCT+AGG - chr7_1:21560886-21560905 Msa1013970:intron 50.0%
ATGCTGCTCGGTAATCCTCT+GGG + chr7_1:21561298-21561317 None:intergenic 50.0%
TATGCTGCTCGGTAATCCTC+TGG + chr7_1:21561299-21561318 None:intergenic 50.0%
AGGATTACCGAGCAGCATAC+AGG - chr7_1:21561300-21561319 Msa1013970:intron 50.0%
GATCAGCGTCTCATGATTGG+TGG + chr7_1:21561581-21561600 None:intergenic 50.0%
AATCTCTCTCTCACTCCCTC+TGG - chr7_1:21561613-21561632 Msa1013970:intron 50.0%
TGCTTGGGGGTCTATGGAGT+CGG + chr7_1:21559482-21559501 None:intergenic 55.0%
GCTTCATGCTTGGGGGTCTA+TGG + chr7_1:21559488-21559507 None:intergenic 55.0%
CCCCAAGCATGAAGCCTGAA+AGG - chr7_1:21559493-21559512 Msa1013970:intron 55.0%
AGTAGCAGAGATGCTAGGGC+CGG - chr7_1:21560891-21560910 Msa1013970:intron 55.0%
TGTCGTGCCTGTATGCTGCT+CGG + chr7_1:21561310-21561329 None:intergenic 55.0%
! CTCACTCCCTCTGGAAGACA+TGG - chr7_1:21561622-21561641 Msa1013970:intron 55.0%
AGCAGAGATGCTAGGGCCGG+TGG - chr7_1:21560894-21560913 Msa1013970:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 21558924 21561979 21558924 ID=Msa1013970;Name=Msa1013970
chr7_1 mRNA 21558924 21561979 21558924 ID=Msa1013970-mRNA-1;Parent=Msa1013970;Name=Msa1013970-mRNA-1;_AED=0.23;_eAED=0.23;_QI=127|1|1|1|0.8|0.83|6|325|390
chr7_1 exon 21558924 21559374 21558924 ID=Msa1013970-mRNA-1:exon:5153;Parent=Msa1013970-mRNA-1
chr7_1 exon 21559544 21559720 21559544 ID=Msa1013970-mRNA-1:exon:5152;Parent=Msa1013970-mRNA-1
chr7_1 exon 21559826 21560038 21559826 ID=Msa1013970-mRNA-1:exon:5151;Parent=Msa1013970-mRNA-1
chr7_1 exon 21560289 21560813 21560289 ID=Msa1013970-mRNA-1:exon:5150;Parent=Msa1013970-mRNA-1
chr7_1 exon 21561052 21561110 21561052 ID=Msa1013970-mRNA-1:exon:5149;Parent=Msa1013970-mRNA-1
chr7_1 exon 21561780 21561979 21561780 ID=Msa1013970-mRNA-1:exon:5148;Parent=Msa1013970-mRNA-1
chr7_1 five_prime_UTR 21561853 21561979 21561853 ID=Msa1013970-mRNA-1:five_prime_utr;Parent=Msa1013970-mRNA-1
chr7_1 CDS 21561780 21561852 21561780 ID=Msa1013970-mRNA-1:cds;Parent=Msa1013970-mRNA-1
chr7_1 CDS 21561052 21561110 21561052 ID=Msa1013970-mRNA-1:cds;Parent=Msa1013970-mRNA-1
chr7_1 CDS 21560289 21560813 21560289 ID=Msa1013970-mRNA-1:cds;Parent=Msa1013970-mRNA-1
chr7_1 CDS 21559826 21560038 21559826 ID=Msa1013970-mRNA-1:cds;Parent=Msa1013970-mRNA-1
chr7_1 CDS 21559544 21559720 21559544 ID=Msa1013970-mRNA-1:cds;Parent=Msa1013970-mRNA-1
chr7_1 CDS 21559249 21559374 21559249 ID=Msa1013970-mRNA-1:cds;Parent=Msa1013970-mRNA-1
chr7_1 three_prime_UTR 21558924 21559248 21558924 ID=Msa1013970-mRNA-1:three_prime_utr;Parent=Msa1013970-mRNA-1
Gene Sequence

>Msa1013970

ATGTTATTTTCATCATATAAGATTCTCCCTCTGCTACACAGTCAGCGTTACTTTATCAACACTTGTTTTAAATCTCAATCTATTCAAACAGCAACTACAAATCATAGTCAGCAGAAGAACAAGGCAGATGTGGCTCCTCGTTTCCATTCTAATTTTACAGCAGCCGACCCTCGAAGAACTTACAACCAAACACGAAATGCTTCGACATTTGCCAACCCAAGAAGCCATGTCTTTCACAATACTAATTACAGGCCAAGTGCCTCTACTAACTACAGACCAAATGGTATAGTATCTAATGATAAAGTTTTGTTAAGTGAAAAATTCAGAAGTGAAGAATCTGAAGTGTCAAAAGAAATGACTCGGGGTCCTCGGTTTCATCAAAACAATTCCAACCCGGAATCATCAGTTGTTAAGGATGAATTTGCGTTCACAGTGTGCAGAGATCGATATAACCTTCCAGATTTCCAAACTAAATATGAAACTGCTAAATTTTATATGATTAAATCTTTCAATGAAGATCACATTCAAAAGGGAATAAAATATGATGTTTGGACAAGCACTCCACATGGAAATAAGAAGTTGAACGCTGCATTCCAAAACGCAGAAGCTAAATCAAGTGAGACAGGCACACAGTGCCCAATCTTCCTCTTCTTCTCGGTAAATGCAAGTGGCCAATTTGTTGGAGTAGCAGAGATGCTAGGGCCGGTGGACTTCAAAAAAGACATGAAATTTTGGAAACTTGACAAATACAACGGATTCTTCCCAATTAAGTGGCATATAATAAAAGATGTTCCCAACTGTTTGTTTCGACACATCATCCTTACAAACAATGAGAACAGGTGTGTAACTTTCAGTAGGGACACACAAGAGATTGGACTAAAAGATGGTCTGGAAATGCTAAAAATATTCAAAAGTTATCAGGCAAAGACATCTCTATTGGATGATTTTGATTTCTATGAGAATCGAGAGAAGTTATTTCGTTCCCAGAGGATTACCGAGCAGCATACAGGCACGACACATGAAGTGAACAATAATGATAGTTACCATAACACTATGAAGGCAAAAGAGAAGAAAACAGATATGCAATCAAGTGGTACCACCAATCATGAGACGCTGATCAAACTAACAAGGAATCTCTCTCTCACTCCCTCTGGAAGACATGGCTTTAGATAA

Protein sequence

>Msa1013970

MLFSSYKILPLLHSQRYFINTCFKSQSIQTATTNHSQQKNKADVAPRFHSNFTAADPRRTYNQTRNASTFANPRSHVFHNTNYRPSASTNYRPNGIVSNDKVLLSEKFRSEESEVSKEMTRGPRFHQNNSNPESSVVKDEFAFTVCRDRYNLPDFQTKYETAKFYMIKSFNEDHIQKGIKYDVWTSTPHGNKKLNAAFQNAEAKSSETGTQCPIFLFFSVNASGQFVGVAEMLGPVDFKKDMKFWKLDKYNGFFPIKWHIIKDVPNCLFRHIILTNNENRCVTFSRDTQEIGLKDGLEMLKIFKSYQAKTSLLDDFDFYENREKLFRSQRITEQHTGTTHEVNNNDSYHNTMKAKEKKTDMQSSGTTNHETLIKLTRNLSLTPSGRHGFR*