Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1013970 | ABO80468.1 | 82.203 | 354 | 52 | 3 | 45 | 390 | 100 | 450 | 0.0 | 593 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1013970 | sp|Q3MK94|ECT1_ARATH | 50.000 | 232 | 106 | 4 | 108 | 334 | 187 | 413 | 3.95e-73 | 237 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1013970 | A4PSE1 | 82.203 | 354 | 52 | 3 | 45 | 390 | 100 | 450 | 0.0 | 593 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0372460 | Msa1013970 | 0.809079 | 2.259097e-50 | -8.615850e-47 |
Msa0412260 | Msa1013970 | 0.804312 | 2.294403e-49 | -8.615850e-47 |
Msa0456770 | Msa1013970 | 0.814788 | 1.289022e-51 | -8.615850e-47 |
Msa1013950 | Msa1013970 | 0.989862 | 5.585728e-180 | -8.615850e-47 |
Msa1013970 | Msa1093550 | 0.994439 | 2.895402e-207 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1013970 | MtrunA17_Chr2g0277111 | 82.203 | 354 | 52 | 3 | 45 | 390 | 157 | 507 | 0.0 | 593 |
Msa1013970 | MtrunA17_Chr2g0309651 | 46.178 | 314 | 152 | 7 | 34 | 340 | 251 | 554 | 2.56e-87 | 275 |
Msa1013970 | MtrunA17_Chr4g0069011 | 63.441 | 186 | 68 | 0 | 145 | 330 | 315 | 500 | 3.81e-80 | 258 |
Msa1013970 | MtrunA17_Chr2g0293641 | 55.111 | 225 | 94 | 2 | 113 | 330 | 310 | 534 | 1.89e-78 | 255 |
Msa1013970 | MtrunA17_Chr4g0000071 | 44.599 | 287 | 140 | 5 | 114 | 385 | 341 | 623 | 2.10e-73 | 240 |
Msa1013970 | MtrunA17_Chr7g0253191 | 40.805 | 348 | 151 | 11 | 64 | 384 | 331 | 650 | 1.81e-71 | 236 |
Msa1013970 | MtrunA17_Chr6g0461531 | 54.255 | 188 | 82 | 1 | 147 | 334 | 400 | 583 | 2.30e-68 | 228 |
Msa1013970 | MtrunA17_Chr8g0380431 | 59.091 | 154 | 59 | 1 | 138 | 291 | 397 | 546 | 1.18e-57 | 197 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1013970 | AT1G09810.2 | 52.075 | 265 | 114 | 4 | 109 | 370 | 133 | 387 | 1.51e-87 | 271 |
Msa1013970 | AT1G09810.3 | 52.075 | 265 | 114 | 4 | 109 | 370 | 156 | 410 | 2.07e-87 | 272 |
Msa1013970 | AT1G09810.1 | 58.222 | 225 | 91 | 2 | 109 | 330 | 175 | 399 | 2.10e-87 | 273 |
Msa1013970 | AT1G79270.2 | 62.766 | 188 | 70 | 0 | 144 | 331 | 288 | 475 | 1.47e-84 | 266 |
Msa1013970 | AT1G79270.4 | 62.766 | 188 | 70 | 0 | 144 | 331 | 288 | 475 | 1.47e-84 | 266 |
Msa1013970 | AT1G79270.3 | 62.766 | 188 | 70 | 0 | 144 | 331 | 288 | 475 | 1.47e-84 | 266 |
Msa1013970 | AT1G79270.1 | 62.766 | 188 | 70 | 0 | 144 | 331 | 303 | 490 | 2.35e-84 | 266 |
Msa1013970 | AT3G17330.2 | 58.639 | 191 | 79 | 0 | 140 | 330 | 146 | 336 | 5.89e-78 | 249 |
Msa1013970 | AT1G48110.2 | 58.639 | 191 | 79 | 0 | 140 | 330 | 299 | 489 | 9.59e-77 | 249 |
Msa1013970 | AT1G48110.1 | 58.639 | 191 | 79 | 0 | 140 | 330 | 299 | 489 | 9.59e-77 | 249 |
Msa1013970 | AT3G17330.1 | 58.639 | 191 | 79 | 0 | 140 | 330 | 248 | 438 | 1.16e-76 | 248 |
Msa1013970 | AT3G17330.3 | 58.639 | 191 | 79 | 0 | 140 | 330 | 248 | 438 | 1.16e-76 | 248 |
Msa1013970 | AT5G58190.2 | 51.339 | 224 | 93 | 4 | 121 | 336 | 276 | 491 | 1.19e-75 | 244 |
Msa1013970 | AT5G58190.1 | 51.339 | 224 | 93 | 4 | 121 | 336 | 275 | 490 | 1.53e-75 | 243 |
Msa1013970 | AT3G13060.3 | 47.809 | 251 | 113 | 3 | 114 | 354 | 322 | 564 | 3.02e-74 | 242 |
Msa1013970 | AT3G13060.6 | 47.809 | 251 | 113 | 3 | 114 | 354 | 322 | 564 | 3.02e-74 | 242 |
Msa1013970 | AT3G13060.2 | 47.809 | 251 | 113 | 3 | 114 | 354 | 344 | 586 | 3.37e-74 | 243 |
Msa1013970 | AT3G13060.4 | 47.809 | 251 | 113 | 3 | 114 | 354 | 334 | 576 | 3.69e-74 | 243 |
Msa1013970 | AT3G03950.3 | 50.000 | 232 | 106 | 4 | 108 | 334 | 187 | 413 | 4.02e-74 | 237 |
Msa1013970 | AT3G03950.2 | 50.000 | 232 | 106 | 4 | 108 | 334 | 183 | 409 | 4.19e-74 | 237 |
Msa1013970 | AT3G03950.1 | 50.000 | 232 | 106 | 4 | 108 | 334 | 184 | 410 | 5.45e-74 | 236 |
Msa1013970 | AT5G61020.2 | 48.739 | 238 | 102 | 3 | 108 | 330 | 191 | 423 | 2.35e-73 | 237 |
Msa1013970 | AT5G61020.1 | 48.739 | 238 | 102 | 3 | 108 | 330 | 193 | 425 | 2.58e-73 | 237 |
Msa1013970 | AT1G55500.1 | 53.555 | 211 | 88 | 2 | 114 | 324 | 316 | 516 | 2.63e-73 | 238 |
Msa1013970 | AT1G55500.6 | 53.555 | 211 | 88 | 2 | 114 | 324 | 329 | 529 | 3.73e-73 | 238 |
Msa1013970 | AT1G55500.3 | 53.555 | 211 | 88 | 2 | 114 | 324 | 359 | 559 | 3.87e-73 | 239 |
Msa1013970 | AT1G55500.4 | 53.182 | 220 | 86 | 4 | 118 | 324 | 357 | 572 | 3.87e-73 | 239 |
Msa1013970 | AT1G55500.2 | 53.182 | 220 | 86 | 4 | 118 | 324 | 357 | 572 | 3.92e-73 | 239 |
Msa1013970 | AT3G13460.2 | 48.347 | 242 | 103 | 3 | 118 | 341 | 377 | 614 | 3.97e-73 | 241 |
Msa1013970 | AT3G13460.4 | 48.347 | 242 | 103 | 3 | 118 | 341 | 379 | 616 | 3.99e-73 | 241 |
Msa1013970 | AT3G13460.1 | 48.347 | 242 | 103 | 3 | 118 | 341 | 380 | 617 | 4.11e-73 | 241 |
Msa1013970 | AT1G55500.5 | 53.182 | 220 | 86 | 4 | 118 | 324 | 357 | 572 | 4.50e-73 | 239 |
Msa1013970 | AT1G27960.3 | 49.515 | 206 | 93 | 3 | 118 | 323 | 219 | 413 | 2.70e-65 | 215 |
Msa1013970 | AT1G27960.1 | 49.515 | 206 | 93 | 3 | 118 | 323 | 293 | 487 | 1.33e-64 | 215 |
Msa1013970 | AT3G13060.1 | 49.468 | 188 | 77 | 3 | 114 | 291 | 344 | 523 | 6.30e-55 | 190 |
Msa1013970 | AT3G13460.3 | 50.000 | 92 | 38 | 2 | 133 | 220 | 409 | 496 | 2.04e-19 | 90.5 |
Msa1013970 | AT3G13060.5 | 37.607 | 117 | 55 | 3 | 114 | 220 | 344 | 452 | 1.48e-15 | 78.6 |
Msa1013970 | AT1G27960.2 | 36.290 | 124 | 68 | 3 | 118 | 241 | 293 | 405 | 7.70e-15 | 76.3 |
Msa1013970 | AT4G11970.5 | 26.840 | 231 | 135 | 6 | 103 | 313 | 1 | 217 | 6.48e-14 | 73.2 |
Msa1013970 | AT4G11970.2 | 26.957 | 230 | 134 | 6 | 105 | 314 | 3 | 218 | 7.29e-14 | 72.8 |
Msa1013970 | AT4G11970.3 | 26.957 | 230 | 134 | 6 | 105 | 314 | 3 | 218 | 9.57e-14 | 72.4 |
Msa1013970 | AT4G11970.1 | 26.957 | 230 | 134 | 6 | 105 | 314 | 3 | 218 | 5.04e-13 | 70.5 |
Msa1013970 | AT4G11970.4 | 26.957 | 230 | 134 | 6 | 105 | 314 | 3 | 218 | 5.04e-13 | 70.5 |
Find 85 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTATTATATGCCACTTAAT+TGG | 0.122163 | 7_1:+21559911 | None:intergenic |
AGATCAAACCAAGAGATATT+TGG | 0.251737 | 7_1:-21558998 | Msa1013970:three_prime_UTR |
TTGATTTAGCTTCTGCGTTT+TGG | 0.256390 | 7_1:+21560330 | None:intergenic |
AAATTTATAATAACAATTCT+AGG | 0.261214 | 7_1:+21561934 | None:intergenic |
TACTTGAGTCAATCAGATTA+AGG | 0.280024 | 7_1:-21559106 | Msa1013970:three_prime_UTR |
TAGCAGTTTCATATTTAGTT+TGG | 0.294839 | 7_1:+21560459 | None:intergenic |
CCCAATCTTCCTCTTCTTCT+CGG | 0.317116 | 7_1:-21560288 | Msa1013970:intron |
TCATATTTAGTTTGGAAATC+TGG | 0.320309 | 7_1:+21560467 | None:intergenic |
TCTTTCACAATACTAATTAC+AGG | 0.330280 | 7_1:-21560694 | Msa1013970:CDS |
TCCTTAACAACTGATGATTC+CGG | 0.338646 | 7_1:+21560530 | None:intergenic |
AGGGAATAAAATATGATGTT+TGG | 0.357963 | 7_1:-21560394 | Msa1013970:CDS |
ACCTGTTCTCATTGTTTGTA+AGG | 0.359165 | 7_1:+21559855 | None:intergenic |
TTATTATATGCCACTTAATT+GGG | 0.372548 | 7_1:+21559912 | None:intergenic |
TTGTGAAAGACATGGCTTCT+TGG | 0.385400 | 7_1:+21560707 | None:intergenic |
TCTCTGCTACTCCAACAAAT+TGG | 0.385829 | 7_1:+21560002 | None:intergenic |
TATGCTGCTCGGTAATCCTC+TGG | 0.390833 | 7_1:+21559585 | None:intergenic |
TCATTAGATACTATACCATT+TGG | 0.393991 | 7_1:+21560647 | None:intergenic |
CCTTAACAACTGATGATTCC+GGG | 0.395222 | 7_1:+21560531 | None:intergenic |
ATGTCGAAGCATTTCGTGTT+TGG | 0.395427 | 7_1:+21560738 | None:intergenic |
TGTGAAAGACATGGCTTCTT+GGG | 0.396327 | 7_1:+21560708 | None:intergenic |
CCCGGAATCATCAGTTGTTA+AGG | 0.398116 | 7_1:-21560531 | Msa1013970:CDS |
ACCGAGAAGAAGAGGAAGAT+TGG | 0.402582 | 7_1:+21560287 | None:intergenic |
AATGCAAGTGGCCAATTTGT+TGG | 0.419888 | 7_1:-21560013 | Msa1013970:CDS |
CAATGAAGATCACATTCAAA+AGG | 0.420815 | 7_1:-21560414 | Msa1013970:CDS |
TCAGGCAAAGACATCTCTAT+TGG | 0.426726 | 7_1:-21559651 | Msa1013970:CDS |
ATTGTAAACCAAATATCTCT+TGG | 0.430496 | 7_1:+21558990 | None:intergenic |
GATTGGACTAAAAGATGGTC+TGG | 0.434011 | 7_1:-21559699 | Msa1013970:CDS |
CTAGTTCAGTCATGGTTGAA+TGG | 0.439966 | 7_1:+21558953 | None:intergenic |
GTTGTAAGTTCTTCGAGGGT+CGG | 0.440776 | 7_1:+21560760 | None:intergenic |
TCAGTACTATCAAAACTTGT+CGG | 0.441080 | 7_1:-21559021 | Msa1013970:three_prime_UTR |
TTTGATCAGCGTCTCATGAT+TGG | 0.450002 | 7_1:+21559300 | None:intergenic |
CCGAGAAGAAGAGGAAGATT+GGG | 0.454266 | 7_1:+21560288 | None:intergenic |
CTGTAGTTAGTAGAGGCACT+TGG | 0.483395 | 7_1:+21560671 | None:intergenic |
AATCTCTCTCTCACTCCCTC+TGG | 0.485346 | 7_1:-21559268 | Msa1013970:CDS |
TCCTTACAAACAATGAGAAC+AGG | 0.488032 | 7_1:-21559856 | Msa1013970:CDS |
AAGAAATGACTCGGGGTCCT+CGG | 0.496517 | 7_1:-21560574 | Msa1013970:CDS |
TTTGTCATCTAGTTCAGTCA+TGG | 0.498391 | 7_1:+21558945 | None:intergenic |
CTCACTCCCTCTGGAAGACA+TGG | 0.499578 | 7_1:-21559259 | Msa1013970:CDS |
CGGCTGCTGTAAAATTAGAA+TGG | 0.501961 | 7_1:+21560780 | None:intergenic |
AATGAAGATCACATTCAAAA+GGG | 0.506544 | 7_1:-21560413 | Msa1013970:CDS |
TCTACTAACTACAGACCAAA+TGG | 0.507075 | 7_1:-21560662 | Msa1013970:CDS |
ACGGATTCTTCCCAATTAAG+TGG | 0.508762 | 7_1:-21559922 | Msa1013970:CDS |
TTGCAGATTGGACTAAAAGA+TGG | 0.509143 | 7_1:-21559704 | Msa1013970:intron |
GTTGGAGTAGCAGAGATGCT+AGG | 0.509883 | 7_1:-21559995 | Msa1013970:CDS |
TTTGGTTGTAAGTTCTTCGA+GGG | 0.514819 | 7_1:+21560756 | None:intergenic |
GTTTGGTTGTAAGTTCTTCG+AGG | 0.516731 | 7_1:+21560755 | None:intergenic |
TTGAACTCACCGAGAAGAAG+AGG | 0.527322 | 7_1:+21560279 | None:intergenic |
TTGGAGTAGCAGAGATGCTA+GGG | 0.531951 | 7_1:-21559994 | Msa1013970:CDS |
GAAGCTAAATCAAGTGAGAC+AGG | 0.536998 | 7_1:-21560320 | Msa1013970:CDS |
GATCAGCGTCTCATGATTGG+TGG | 0.541226 | 7_1:+21559303 | None:intergenic |
ATGTGTCGAAACAAACAGTT+GGG | 0.547018 | 7_1:+21559881 | None:intergenic |
AGGATTACCGAGCAGCATAC+AGG | 0.552460 | 7_1:-21559581 | Msa1013970:CDS |
AGCAGAGATGCTAGGGCCGG+TGG | 0.553830 | 7_1:-21559987 | Msa1013970:CDS |
AAAGACATGGCTTCTTGGGT+TGG | 0.559310 | 7_1:+21560712 | None:intergenic |
AAGTGTCAAAAGAAATGACT+CGG | 0.565132 | 7_1:-21560583 | Msa1013970:CDS |
ACAGGTGTGTAACTTTCAGT+AGG | 0.575402 | 7_1:-21559838 | Msa1013970:CDS |
ATGCTGCTCGGTAATCCTCT+GGG | 0.580878 | 7_1:+21559586 | None:intergenic |
GATGTGTCGAAACAAACAGT+TGG | 0.582692 | 7_1:+21559880 | None:intergenic |
AGTACTGAGAAATATATACA+TGG | 0.583571 | 7_1:+21559036 | None:intergenic |
ATTTAGTTTGGAAATCTGGA+AGG | 0.584834 | 7_1:+21560471 | None:intergenic |
TCTAAAGCCATGTCTTCCAG+AGG | 0.588899 | 7_1:+21559252 | None:intergenic |
ATTTGGTCTGTAGTTAGTAG+AGG | 0.589027 | 7_1:+21560664 | None:intergenic |
TGGAAACTTGACAAATACAA+CGG | 0.589722 | 7_1:-21559941 | Msa1013970:CDS |
AAAACAGATATGCAATCAAG+TGG | 0.597901 | 7_1:-21559328 | Msa1013970:CDS |
GCAGAAGAACAAGGCAGATG+TGG | 0.598529 | 7_1:-21561051 | Msa1013970:intron |
AACAACTGATGATTCCGGGT+TGG | 0.603971 | 7_1:+21560535 | None:intergenic |
TGTCGTGCCTGTATGCTGCT+CGG | 0.604290 | 7_1:+21559574 | None:intergenic |
AGTGTCAAAAGAAATGACTC+GGG | 0.607102 | 7_1:-21560582 | Msa1013970:CDS |
ATTAATCAGGTAAATGCAAG+TGG | 0.607713 | 7_1:-21560025 | Msa1013970:intron |
TCATAGTCAGCAGAAGAACA+AGG | 0.611480 | 7_1:-21561060 | Msa1013970:CDS |
AATTAGTATTGTGAAAGACA+TGG | 0.624561 | 7_1:+21560699 | None:intergenic |
AACGCTGACTGTGTAGCAGA+GGG | 0.626597 | 7_1:+21561804 | None:intergenic |
TTCAACTTCTTATTTCCATG+TGG | 0.626711 | 7_1:+21560362 | None:intergenic |
AGTAGCAGAGATGCTAGGGC+CGG | 0.626729 | 7_1:-21559990 | Msa1013970:CDS |
TAACGCTGACTGTGTAGCAG+AGG | 0.627646 | 7_1:+21561803 | None:intergenic |
CAGGTGTGTAACTTTCAGTA+GGG | 0.627821 | 7_1:-21559837 | Msa1013970:CDS |
GTTTGGACAAGCACTCCACA+TGG | 0.628206 | 7_1:-21560377 | Msa1013970:CDS |
CTAAAGCCATGTCTTCCAGA+GGG | 0.641953 | 7_1:+21559253 | None:intergenic |
TTTCAGTAGGGACACACAAG+AGG | 0.654133 | 7_1:-21559825 | Msa1013970:intron |
AGAAGTTATTTCGTTCCCAG+AGG | 0.656111 | 7_1:-21559601 | Msa1013970:CDS |
AGACGCTGATCAAACTAACA+AGG | 0.658325 | 7_1:-21559291 | Msa1013970:CDS |
TCATCAAAACAATTCCAACC+CGG | 0.676336 | 7_1:-21560549 | Msa1013970:CDS |
GTACTGAGAAATATATACAT+GGG | 0.677984 | 7_1:+21559037 | None:intergenic |
GTGTCAAAAGAAATGACTCG+GGG | 0.701528 | 7_1:-21560581 | Msa1013970:CDS |
GTAAAATTAGAATGGAAACG+AGG | 0.766321 | 7_1:+21560788 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATTTATAATAACAATTCT+AGG | + | chr7_1:21558950-21558969 | None:intergenic | 10.0% |
!!! | TTATTTTTATGTTTTTCATA+TGG | - | chr7_1:21559740-21559759 | Msa1013970:intron | 10.0% |
!!! | TCAATATAATATTTAAGACA+TGG | + | chr7_1:21559171-21559190 | None:intergenic | 15.0% |
!!! | TAAATACAAAGTAATGTTTT+TGG | + | chr7_1:21559199-21559218 | None:intergenic | 15.0% |
!! | AAAAATATTCAAAAGTTATC+AGG | - | chr7_1:21561212-21561231 | Msa1013970:intron | 15.0% |
!!! | TTAATTGGTTTCTCTTTTAT+TGG | - | chr7_1:21559715-21559734 | Msa1013970:intron | 20.0% |
!! | ACTTAAGATATTGATATTGT+TGG | - | chr7_1:21560681-21560700 | Msa1013970:CDS | 20.0% |
!! | GATGAACATTCTTTATAATA+TGG | - | chr7_1:21560753-21560772 | Msa1013970:CDS | 20.0% |
!!! | TATTTGTTGTCAAATTAATC+AGG | - | chr7_1:21560843-21560862 | Msa1013970:intron | 20.0% |
!!! | TCAAAAAAGACATGAAATTT+TGG | - | chr7_1:21560920-21560939 | Msa1013970:intron | 20.0% |
!!! | TTATTATATGCCACTTAATT+GGG | + | chr7_1:21560972-21560991 | None:intergenic | 20.0% |
!!! | TTTATTATATGCCACTTAAT+TGG | + | chr7_1:21560973-21560992 | None:intergenic | 20.0% |
!! | TTATCAAACCACAAAAAATT+TGG | + | chr7_1:21561700-21561719 | None:intergenic | 20.0% |
! | ATTTGTATGCATATTGTTCT+TGG | - | chr7_1:21559267-21559286 | Msa1013970:CDS | 25.0% |
! | TAAAATCCTCCTATATATAG+GGG | + | chr7_1:21559358-21559377 | None:intergenic | 25.0% |
! | CTAAAATCCTCCTATATATA+GGG | + | chr7_1:21559359-21559378 | None:intergenic | 25.0% |
! | AATCTTTCATTTGTCTGAAA+TGG | - | chr7_1:21559655-21559674 | Msa1013970:CDS | 25.0% |
! | TATTTCCTAAAGAGATGAAA+GGG | + | chr7_1:21559946-21559965 | None:intergenic | 25.0% |
! | TTATTTCCTAAAGAGATGAA+AGG | + | chr7_1:21559947-21559966 | None:intergenic | 25.0% |
! | AACAACAATGACATTTCTAT+CGG | + | chr7_1:21559985-21560004 | None:intergenic | 25.0% |
! | GATTACAAAATGCATTGTTT+AGG | - | chr7_1:21560008-21560027 | Msa1013970:CDS | 25.0% |
! | AATTAGTATTGTGAAAGACA+TGG | + | chr7_1:21560185-21560204 | None:intergenic | 25.0% |
! | TCTTTCACAATACTAATTAC+AGG | - | chr7_1:21560187-21560206 | Msa1013970:intron | 25.0% |
! | TCATTAGATACTATACCATT+TGG | + | chr7_1:21560237-21560256 | None:intergenic | 25.0% |
!!! | TCATATTTAGTTTGGAAATC+TGG | + | chr7_1:21560417-21560436 | None:intergenic | 25.0% |
! | TAGCAGTTTCATATTTAGTT+TGG | + | chr7_1:21560425-21560444 | None:intergenic | 25.0% |
! | AATGAAGATCACATTCAAAA+GGG | - | chr7_1:21560468-21560487 | Msa1013970:CDS | 25.0% |
! | AGGGAATAAAATATGATGTT+TGG | - | chr7_1:21560487-21560506 | Msa1013970:CDS | 25.0% |
!!! | GCCATTTTTTTAATACAAGA+TGG | - | chr7_1:21560648-21560667 | Msa1013970:CDS | 25.0% |
! | GCCATCTTGTATTAAAAAAA+TGG | + | chr7_1:21560652-21560671 | None:intergenic | 25.0% |
! | TAAGATATTGATATTGTTGG+AGG | - | chr7_1:21560684-21560703 | Msa1013970:CDS | 25.0% |
!! | TATAATATGGTGTCAATGAT+TGG | - | chr7_1:21560766-21560785 | Msa1013970:CDS | 25.0% |
!!! | ACTAGTTTTTAAATGTAGGA+AGG | + | chr7_1:21560805-21560824 | None:intergenic | 25.0% |
! | TTCCTACATTTAAAAACTAG+TGG | - | chr7_1:21560804-21560823 | Msa1013970:intron | 25.0% |
!!! | AACCACTAGTTTTTAAATGT+AGG | + | chr7_1:21560809-21560828 | None:intergenic | 25.0% |
! | ACCAAGAAAATACCAAAAAA+TGG | - | chr7_1:21561670-21561689 | Msa1013970:intron | 25.0% |
!!! | TCCATTTTTTGGTATTTTCT+TGG | + | chr7_1:21561674-21561693 | None:intergenic | 25.0% |
!!! | AAATTTGGTCATCCATTTTT+TGG | + | chr7_1:21561685-21561704 | None:intergenic | 25.0% |
! | GTACTGAGAAATATATACAT+GGG | + | chr7_1:21561847-21561866 | None:intergenic | 25.0% |
!! | AGTACTGAGAAATATATACA+TGG | + | chr7_1:21561848-21561867 | None:intergenic | 25.0% |
! | ATTGTAAACCAAATATCTCT+TGG | + | chr7_1:21561894-21561913 | None:intergenic | 25.0% |
CCTAAAATCCTCCTATATAT+AGG | + | chr7_1:21559360-21559379 | None:intergenic | 30.0% | |
! | CCTATATATAGGAGGATTTT+AGG | - | chr7_1:21559357-21559376 | Msa1013970:intron | 30.0% |
ATTAAGAGTCCAAATAAGAC+TGG | + | chr7_1:21559552-21559571 | None:intergenic | 30.0% | |
TATTTGAACGCTCATTTAAG+TGG | - | chr7_1:21559619-21559638 | Msa1013970:CDS | 30.0% | |
ATAGATTGAGCTATATCACA+TGG | + | chr7_1:21559783-21559802 | None:intergenic | 30.0% | |
! | CAAAATGCATTGTTTAGGTT+TGG | - | chr7_1:21560013-21560032 | Msa1013970:CDS | 30.0% |
!!! | AAGTGAATGTGTTATTTTGC+AGG | - | chr7_1:21560068-21560087 | Msa1013970:intron | 30.0% |
GTAAAATTAGAATGGAAACG+AGG | + | chr7_1:21560096-21560115 | None:intergenic | 30.0% | |
AAGTGTCAAAAGAAATGACT+CGG | - | chr7_1:21560298-21560317 | Msa1013970:CDS | 30.0% | |
!! | ATTTAGTTTGGAAATCTGGA+AGG | + | chr7_1:21560413-21560432 | None:intergenic | 30.0% |
CAATGAAGATCACATTCAAA+AGG | - | chr7_1:21560467-21560486 | Msa1013970:CDS | 30.0% | |
! | TTCAACTTCTTATTTCCATG+TGG | + | chr7_1:21560522-21560541 | None:intergenic | 30.0% |
ATTAATCAGGTAAATGCAAG+TGG | - | chr7_1:21560856-21560875 | Msa1013970:intron | 30.0% | |
TGGAAACTTGACAAATACAA+CGG | - | chr7_1:21560940-21560959 | Msa1013970:intron | 30.0% | |
CAAAGGAAATAGAACTTACA+TGG | + | chr7_1:21561359-21561378 | None:intergenic | 30.0% | |
! | TATTCAAGTGTTCTAGACAA+AGG | + | chr7_1:21561376-21561395 | None:intergenic | 30.0% |
AAAACAGATATGCAATCAAG+TGG | - | chr7_1:21561553-21561572 | Msa1013970:intron | 30.0% | |
! | TTTGGTATTTTCTTGGTCTA+TGG | + | chr7_1:21561667-21561686 | None:intergenic | 30.0% |
!!! | ATGGATGACCAAATTTTTTG+TGG | - | chr7_1:21561689-21561708 | Msa1013970:intron | 30.0% |
TACTTGAGTCAATCAGATTA+AGG | - | chr7_1:21561775-21561794 | Msa1013970:intron | 30.0% | |
TCAGTACTATCAAAACTTGT+CGG | - | chr7_1:21561860-21561879 | Msa1013970:five_prime_UTR | 30.0% | |
AGATCAAACCAAGAGATATT+TGG | - | chr7_1:21561883-21561902 | Msa1013970:five_prime_UTR | 30.0% | |
TAGTAACCCCTATATATAGG+AGG | - | chr7_1:21559349-21559368 | Msa1013970:CDS | 35.0% | |
ACTTATACACTCCTAACTTG+GGG | + | chr7_1:21559398-21559417 | None:intergenic | 35.0% | |
GACTTATACACTCCTAACTT+GGG | + | chr7_1:21559399-21559418 | None:intergenic | 35.0% | |
AGACTTATACACTCCTAACT+TGG | + | chr7_1:21559400-21559419 | None:intergenic | 35.0% | |
! | AGTTAGGAGTGTATAAGTCT+CGG | - | chr7_1:21559400-21559419 | Msa1013970:intron | 35.0% |
CAAAAGAATTCCATCCTTTC+AGG | + | chr7_1:21559510-21559529 | None:intergenic | 35.0% | |
CTCATTTAAGTGGAAGAAGA+CGG | - | chr7_1:21559629-21559648 | Msa1013970:CDS | 35.0% | |
TCATTTAAGTGGAAGAAGAC+GGG | - | chr7_1:21559630-21559649 | Msa1013970:CDS | 35.0% | |
CCAATTAAAACCACGTTGAA+GGG | + | chr7_1:21559703-21559722 | None:intergenic | 35.0% | |
ACCAATTAAAACCACGTTGA+AGG | + | chr7_1:21559704-21559723 | None:intergenic | 35.0% | |
CTTGACTCTCTCTATGAATT+TGG | - | chr7_1:21559881-21559900 | Msa1013970:CDS | 35.0% | |
TTAGACCCTTTCATCTCTTT+AGG | - | chr7_1:21559938-21559957 | Msa1013970:CDS | 35.0% | |
! | AATGCATTGTTTAGGTTTGG+TGG | - | chr7_1:21560016-21560035 | Msa1013970:CDS | 35.0% |
TTTGGTTGTAAGTTCTTCGA+GGG | + | chr7_1:21560128-21560147 | None:intergenic | 35.0% | |
ATTTGGTCTGTAGTTAGTAG+AGG | + | chr7_1:21560220-21560239 | None:intergenic | 35.0% | |
TCTACTAACTACAGACCAAA+TGG | - | chr7_1:21560219-21560238 | Msa1013970:intron | 35.0% | |
AGTGTCAAAAGAAATGACTC+GGG | - | chr7_1:21560299-21560318 | Msa1013970:CDS | 35.0% | |
!!! | GAATTGTTTTGATGAAACCG+AGG | + | chr7_1:21560327-21560346 | None:intergenic | 35.0% |
TCATCAAAACAATTCCAACC+CGG | - | chr7_1:21560332-21560351 | Msa1013970:CDS | 35.0% | |
TCCTTAACAACTGATGATTC+CGG | + | chr7_1:21560354-21560373 | None:intergenic | 35.0% | |
!! | TTGATTTAGCTTCTGCGTTT+TGG | + | chr7_1:21560554-21560573 | None:intergenic | 35.0% |
AAAAATGGCAAGCGAAAACT+TGG | + | chr7_1:21560637-21560656 | None:intergenic | 35.0% | |
!!! | ATGTCTTTTTTGAAGTCCAC+CGG | + | chr7_1:21560913-21560932 | None:intergenic | 35.0% |
ATGTGTCGAAACAAACAGTT+GGG | + | chr7_1:21561003-21561022 | None:intergenic | 35.0% | |
TCCTTACAAACAATGAGAAC+AGG | - | chr7_1:21561025-21561044 | Msa1013970:intron | 35.0% | |
ACCTGTTCTCATTGTTTGTA+AGG | + | chr7_1:21561029-21561048 | None:intergenic | 35.0% | |
! | TTCATCTTTTATAGAGTCCG+AGG | - | chr7_1:21561111-21561130 | Msa1013970:intron | 35.0% |
! | TCATCTTTTATAGAGTCCGA+GGG | - | chr7_1:21561112-21561131 | Msa1013970:intron | 35.0% |
TTGCAGATTGGACTAAAAGA+TGG | - | chr7_1:21561177-21561196 | Msa1013970:intron | 35.0% | |
! | TTTTCTGCAGAACACTATGA+AGG | - | chr7_1:21561519-21561538 | Msa1013970:intron | 35.0% |
! | TTTGTCATCTAGTTCAGTCA+TGG | + | chr7_1:21561939-21561958 | None:intergenic | 35.0% |
ACTAGTGAACGACTCATTGT+TGG | + | chr7_1:21559311-21559330 | None:intergenic | 40.0% | |
GTTCACTAGTCATTGTGTGT+TGG | - | chr7_1:21559321-21559340 | Msa1013970:CDS | 40.0% | |
! | ACTAGTCATTGTGTGTTGGT+TGG | - | chr7_1:21559325-21559344 | Msa1013970:CDS | 40.0% |
GGCTAGTAACCCCTATATAT+AGG | - | chr7_1:21559346-21559365 | Msa1013970:CDS | 40.0% | |
TTTACCTTGTTCCCCAAGTT+AGG | - | chr7_1:21559384-21559403 | Msa1013970:intron | 40.0% | |
AGTGTATAAGTCTCGGATGA+TGG | - | chr7_1:21559407-21559426 | Msa1013970:intron | 40.0% | |
GTGTATAAGTCTCGGATGAT+GGG | - | chr7_1:21559408-21559427 | Msa1013970:intron | 40.0% | |
!! | GGATGATGGGTTCTTAAGTT+CGG | - | chr7_1:21559421-21559440 | Msa1013970:intron | 40.0% |
TCATAATCGCCTAAGCCTAA+TGG | + | chr7_1:21559447-21559466 | None:intergenic | 40.0% | |
ATTAGGCTTAGGCGATTATG+AGG | - | chr7_1:21559446-21559465 | Msa1013970:intron | 40.0% | |
GAGTCCAAATAAGACTGGAA+GGG | + | chr7_1:21559547-21559566 | None:intergenic | 40.0% | |
AGAGTCCAAATAAGACTGGA+AGG | + | chr7_1:21559548-21559567 | None:intergenic | 40.0% | |
!!! | CCCTTCAACGTGGTTTTAAT+TGG | - | chr7_1:21559700-21559719 | Msa1013970:CDS | 40.0% |
TCATAGTCAGCAGAAGAACA+AGG | - | chr7_1:21559821-21559840 | Msa1013970:intron | 40.0% | |
GAGTCAAGAAAGTTGCCAAT+AGG | + | chr7_1:21559869-21559888 | None:intergenic | 40.0% | |
CGGCTGCTGTAAAATTAGAA+TGG | + | chr7_1:21560104-21560123 | None:intergenic | 40.0% | |
GTTTGGTTGTAAGTTCTTCG+AGG | + | chr7_1:21560129-21560148 | None:intergenic | 40.0% | |
! | ATGTCGAAGCATTTCGTGTT+TGG | + | chr7_1:21560146-21560165 | None:intergenic | 40.0% |
TGTGAAAGACATGGCTTCTT+GGG | + | chr7_1:21560176-21560195 | None:intergenic | 40.0% | |
TTGTGAAAGACATGGCTTCT+TGG | + | chr7_1:21560177-21560196 | None:intergenic | 40.0% | |
GTGTCAAAAGAAATGACTCG+GGG | - | chr7_1:21560300-21560319 | Msa1013970:CDS | 40.0% | |
CCTTAACAACTGATGATTCC+GGG | + | chr7_1:21560353-21560372 | None:intergenic | 40.0% | |
GAAGCTAAATCAAGTGAGAC+AGG | - | chr7_1:21560561-21560580 | Msa1013970:CDS | 40.0% | |
AATGCAAGTGGCCAATTTGT+TGG | - | chr7_1:21560868-21560887 | Msa1013970:intron | 40.0% | |
TCTCTGCTACTCCAACAAAT+TGG | + | chr7_1:21560882-21560901 | None:intergenic | 40.0% | |
ACGGATTCTTCCCAATTAAG+TGG | - | chr7_1:21560959-21560978 | Msa1013970:intron | 40.0% | |
GATGTGTCGAAACAAACAGT+TGG | + | chr7_1:21561004-21561023 | None:intergenic | 40.0% | |
ACAGGTGTGTAACTTTCAGT+AGG | - | chr7_1:21561043-21561062 | Msa1013970:intron | 40.0% | |
CAGGTGTGTAACTTTCAGTA+GGG | - | chr7_1:21561044-21561063 | Msa1013970:intron | 40.0% | |
GATTGGACTAAAAGATGGTC+TGG | - | chr7_1:21561182-21561201 | Msa1013970:intron | 40.0% | |
TCAGGCAAAGACATCTCTAT+TGG | - | chr7_1:21561230-21561249 | Msa1013970:intron | 40.0% | |
! | AGAAGTTATTTCGTTCCCAG+AGG | - | chr7_1:21561280-21561299 | Msa1013970:intron | 40.0% |
GAGAAGCTGATAAGTAGCTA+CGG | + | chr7_1:21561413-21561432 | None:intergenic | 40.0% | |
TTTGATCAGCGTCTCATGAT+TGG | + | chr7_1:21561584-21561603 | None:intergenic | 40.0% | |
AGACGCTGATCAAACTAACA+AGG | - | chr7_1:21561590-21561609 | Msa1013970:intron | 40.0% | |
CTAGTTCAGTCATGGTTGAA+TGG | + | chr7_1:21561931-21561950 | None:intergenic | 40.0% | |
! | TGAACGACTCATTGTTGGCT+AGG | + | chr7_1:21559306-21559325 | None:intergenic | 45.0% |
GGTTCTTAAGTTCGGCCATT+AGG | - | chr7_1:21559429-21559448 | Msa1013970:intron | 45.0% | |
TAAGTTCGGCCATTAGGCTT+AGG | - | chr7_1:21559435-21559454 | Msa1013970:intron | 45.0% | |
AGGCGATTATGAGGAGGATA+CGG | - | chr7_1:21559455-21559474 | Msa1013970:intron | 45.0% | |
TCCTTTCAGGCTTCATGCTT+GGG | + | chr7_1:21559497-21559516 | None:intergenic | 45.0% | |
ATCCTTTCAGGCTTCATGCT+TGG | + | chr7_1:21559498-21559517 | None:intergenic | 45.0% | |
AAGCATGAAGCCTGAAAGGA+TGG | - | chr7_1:21559497-21559516 | Msa1013970:intron | 45.0% | |
!! | CATGCCCTTCCAGTCTTATT+TGG | - | chr7_1:21559540-21559559 | Msa1013970:intron | 45.0% |
AATCAGTAGACCCTTCAACG+TGG | - | chr7_1:21559690-21559709 | Msa1013970:CDS | 45.0% | |
AACAAGGCAGATGTGGTATG+TGG | - | chr7_1:21559837-21559856 | Msa1013970:CDS | 45.0% | |
GTTGTAAGTTCTTCGAGGGT+CGG | + | chr7_1:21560124-21560143 | None:intergenic | 45.0% | |
AAAGACATGGCTTCTTGGGT+TGG | + | chr7_1:21560172-21560191 | None:intergenic | 45.0% | |
!! | CTGTAGTTAGTAGAGGCACT+TGG | + | chr7_1:21560213-21560232 | None:intergenic | 45.0% |
AACAACTGATGATTCCGGGT+TGG | + | chr7_1:21560349-21560368 | None:intergenic | 45.0% | |
CCCGGAATCATCAGTTGTTA+AGG | - | chr7_1:21560350-21560369 | Msa1013970:CDS | 45.0% | |
CCGAGAAGAAGAGGAAGATT+GGG | + | chr7_1:21560596-21560615 | None:intergenic | 45.0% | |
CCCAATCTTCCTCTTCTTCT+CGG | - | chr7_1:21560593-21560612 | Msa1013970:CDS | 45.0% | |
ACCGAGAAGAAGAGGAAGAT+TGG | + | chr7_1:21560597-21560616 | None:intergenic | 45.0% | |
TTGAACTCACCGAGAAGAAG+AGG | + | chr7_1:21560605-21560624 | None:intergenic | 45.0% | |
TTGGAGTAGCAGAGATGCTA+GGG | - | chr7_1:21560887-21560906 | Msa1013970:intron | 45.0% | |
TTTCAGTAGGGACACACAAG+AGG | - | chr7_1:21561056-21561075 | Msa1013970:CDS | 45.0% | |
TACGCGACAACTATATCCCT+CGG | + | chr7_1:21561131-21561150 | None:intergenic | 45.0% | |
! | CGACACTCTTGTTTGCAGAT+TGG | - | chr7_1:21561165-21561184 | Msa1013970:intron | 45.0% |
CTAAAGCCATGTCTTCCAGA+GGG | + | chr7_1:21561631-21561650 | None:intergenic | 45.0% | |
! | TCTAAAGCCATGTCTTCCAG+AGG | + | chr7_1:21561632-21561651 | None:intergenic | 45.0% |
! | AACGCTGACTGTGTAGCAGA+GGG | + | chr7_1:21559080-21559099 | None:intergenic | 50.0% |
! | TAACGCTGACTGTGTAGCAG+AGG | + | chr7_1:21559081-21559100 | None:intergenic | 50.0% |
CACTCCTAACTTGGGGAACA+AGG | + | chr7_1:21559391-21559410 | None:intergenic | 50.0% | |
AGGCTTAGGCGATTATGAGG+AGG | - | chr7_1:21559449-21559468 | Msa1013970:intron | 50.0% | |
GGCGATTATGAGGAGGATAC+GGG | - | chr7_1:21559456-21559475 | Msa1013970:intron | 50.0% | |
CTTTCAGGCTTCATGCTTGG+GGG | + | chr7_1:21559495-21559514 | None:intergenic | 50.0% | |
CCTTTCAGGCTTCATGCTTG+GGG | + | chr7_1:21559496-21559515 | None:intergenic | 50.0% | |
GCAGAAGAACAAGGCAGATG+TGG | - | chr7_1:21559830-21559849 | Msa1013970:CDS | 50.0% | |
GGTATGTGGTGACTGCCTAT+TGG | - | chr7_1:21559851-21559870 | Msa1013970:CDS | 50.0% | |
! | AAGAAATGACTCGGGGTCCT+CGG | - | chr7_1:21560307-21560326 | Msa1013970:CDS | 50.0% |
GTTTGGACAAGCACTCCACA+TGG | - | chr7_1:21560504-21560523 | Msa1013970:CDS | 50.0% | |
GTTGGAGTAGCAGAGATGCT+AGG | - | chr7_1:21560886-21560905 | Msa1013970:intron | 50.0% | |
ATGCTGCTCGGTAATCCTCT+GGG | + | chr7_1:21561298-21561317 | None:intergenic | 50.0% | |
TATGCTGCTCGGTAATCCTC+TGG | + | chr7_1:21561299-21561318 | None:intergenic | 50.0% | |
AGGATTACCGAGCAGCATAC+AGG | - | chr7_1:21561300-21561319 | Msa1013970:intron | 50.0% | |
GATCAGCGTCTCATGATTGG+TGG | + | chr7_1:21561581-21561600 | None:intergenic | 50.0% | |
AATCTCTCTCTCACTCCCTC+TGG | - | chr7_1:21561613-21561632 | Msa1013970:intron | 50.0% | |
TGCTTGGGGGTCTATGGAGT+CGG | + | chr7_1:21559482-21559501 | None:intergenic | 55.0% | |
GCTTCATGCTTGGGGGTCTA+TGG | + | chr7_1:21559488-21559507 | None:intergenic | 55.0% | |
CCCCAAGCATGAAGCCTGAA+AGG | - | chr7_1:21559493-21559512 | Msa1013970:intron | 55.0% | |
AGTAGCAGAGATGCTAGGGC+CGG | - | chr7_1:21560891-21560910 | Msa1013970:intron | 55.0% | |
TGTCGTGCCTGTATGCTGCT+CGG | + | chr7_1:21561310-21561329 | None:intergenic | 55.0% | |
! | CTCACTCCCTCTGGAAGACA+TGG | - | chr7_1:21561622-21561641 | Msa1013970:intron | 55.0% |
AGCAGAGATGCTAGGGCCGG+TGG | - | chr7_1:21560894-21560913 | Msa1013970:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_1 | gene | 21558924 | 21561979 | 21558924 | ID=Msa1013970;Name=Msa1013970 |
chr7_1 | mRNA | 21558924 | 21561979 | 21558924 | ID=Msa1013970-mRNA-1;Parent=Msa1013970;Name=Msa1013970-mRNA-1;_AED=0.23;_eAED=0.23;_QI=127|1|1|1|0.8|0.83|6|325|390 |
chr7_1 | exon | 21558924 | 21559374 | 21558924 | ID=Msa1013970-mRNA-1:exon:5153;Parent=Msa1013970-mRNA-1 |
chr7_1 | exon | 21559544 | 21559720 | 21559544 | ID=Msa1013970-mRNA-1:exon:5152;Parent=Msa1013970-mRNA-1 |
chr7_1 | exon | 21559826 | 21560038 | 21559826 | ID=Msa1013970-mRNA-1:exon:5151;Parent=Msa1013970-mRNA-1 |
chr7_1 | exon | 21560289 | 21560813 | 21560289 | ID=Msa1013970-mRNA-1:exon:5150;Parent=Msa1013970-mRNA-1 |
chr7_1 | exon | 21561052 | 21561110 | 21561052 | ID=Msa1013970-mRNA-1:exon:5149;Parent=Msa1013970-mRNA-1 |
chr7_1 | exon | 21561780 | 21561979 | 21561780 | ID=Msa1013970-mRNA-1:exon:5148;Parent=Msa1013970-mRNA-1 |
chr7_1 | five_prime_UTR | 21561853 | 21561979 | 21561853 | ID=Msa1013970-mRNA-1:five_prime_utr;Parent=Msa1013970-mRNA-1 |
chr7_1 | CDS | 21561780 | 21561852 | 21561780 | ID=Msa1013970-mRNA-1:cds;Parent=Msa1013970-mRNA-1 |
chr7_1 | CDS | 21561052 | 21561110 | 21561052 | ID=Msa1013970-mRNA-1:cds;Parent=Msa1013970-mRNA-1 |
chr7_1 | CDS | 21560289 | 21560813 | 21560289 | ID=Msa1013970-mRNA-1:cds;Parent=Msa1013970-mRNA-1 |
chr7_1 | CDS | 21559826 | 21560038 | 21559826 | ID=Msa1013970-mRNA-1:cds;Parent=Msa1013970-mRNA-1 |
chr7_1 | CDS | 21559544 | 21559720 | 21559544 | ID=Msa1013970-mRNA-1:cds;Parent=Msa1013970-mRNA-1 |
chr7_1 | CDS | 21559249 | 21559374 | 21559249 | ID=Msa1013970-mRNA-1:cds;Parent=Msa1013970-mRNA-1 |
chr7_1 | three_prime_UTR | 21558924 | 21559248 | 21558924 | ID=Msa1013970-mRNA-1:three_prime_utr;Parent=Msa1013970-mRNA-1 |
Gene Sequence |
Protein sequence |