Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1093550 | ABO80468.1 | 82.203 | 354 | 52 | 3 | 45 | 390 | 100 | 450 | 0.0 | 593 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1093550 | sp|Q3MK94|ECT1_ARATH | 50.000 | 232 | 106 | 4 | 108 | 334 | 187 | 413 | 3.95e-73 | 237 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1093550 | A4PSE1 | 82.203 | 354 | 52 | 3 | 45 | 390 | 100 | 450 | 0.0 | 593 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0372460 | Msa1093550 | 0.806939 | 6.445846e-50 | -8.615850e-47 |
Msa0412260 | Msa1093550 | 0.805909 | 1.062978e-49 | -8.615850e-47 |
Msa0456770 | Msa1093550 | 0.815937 | 7.155210e-52 | -8.615850e-47 |
Msa1013950 | Msa1093550 | 0.980639 | 1.097344e-150 | -8.615850e-47 |
Msa1013970 | Msa1093550 | 0.994439 | 2.895402e-207 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1093550 | MtrunA17_Chr2g0277111 | 82.203 | 354 | 52 | 3 | 45 | 390 | 157 | 507 | 0.0 | 593 |
Msa1093550 | MtrunA17_Chr2g0309651 | 46.178 | 314 | 152 | 7 | 34 | 340 | 251 | 554 | 2.56e-87 | 275 |
Msa1093550 | MtrunA17_Chr4g0069011 | 63.441 | 186 | 68 | 0 | 145 | 330 | 315 | 500 | 3.81e-80 | 258 |
Msa1093550 | MtrunA17_Chr2g0293641 | 55.111 | 225 | 94 | 2 | 113 | 330 | 310 | 534 | 1.89e-78 | 255 |
Msa1093550 | MtrunA17_Chr4g0000071 | 44.599 | 287 | 140 | 5 | 114 | 385 | 341 | 623 | 2.10e-73 | 240 |
Msa1093550 | MtrunA17_Chr7g0253191 | 40.805 | 348 | 151 | 11 | 64 | 384 | 331 | 650 | 1.81e-71 | 236 |
Msa1093550 | MtrunA17_Chr6g0461531 | 54.255 | 188 | 82 | 1 | 147 | 334 | 400 | 583 | 2.30e-68 | 228 |
Msa1093550 | MtrunA17_Chr8g0380431 | 59.091 | 154 | 59 | 1 | 138 | 291 | 397 | 546 | 1.18e-57 | 197 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1093550 | AT1G09810.2 | 52.075 | 265 | 114 | 4 | 109 | 370 | 133 | 387 | 1.51e-87 | 271 |
Msa1093550 | AT1G09810.3 | 52.075 | 265 | 114 | 4 | 109 | 370 | 156 | 410 | 2.07e-87 | 272 |
Msa1093550 | AT1G09810.1 | 58.222 | 225 | 91 | 2 | 109 | 330 | 175 | 399 | 2.10e-87 | 273 |
Msa1093550 | AT1G79270.2 | 62.766 | 188 | 70 | 0 | 144 | 331 | 288 | 475 | 1.47e-84 | 266 |
Msa1093550 | AT1G79270.4 | 62.766 | 188 | 70 | 0 | 144 | 331 | 288 | 475 | 1.47e-84 | 266 |
Msa1093550 | AT1G79270.3 | 62.766 | 188 | 70 | 0 | 144 | 331 | 288 | 475 | 1.47e-84 | 266 |
Msa1093550 | AT1G79270.1 | 62.766 | 188 | 70 | 0 | 144 | 331 | 303 | 490 | 2.35e-84 | 266 |
Msa1093550 | AT3G17330.2 | 58.639 | 191 | 79 | 0 | 140 | 330 | 146 | 336 | 5.89e-78 | 249 |
Msa1093550 | AT1G48110.2 | 58.639 | 191 | 79 | 0 | 140 | 330 | 299 | 489 | 9.59e-77 | 249 |
Msa1093550 | AT1G48110.1 | 58.639 | 191 | 79 | 0 | 140 | 330 | 299 | 489 | 9.59e-77 | 249 |
Msa1093550 | AT3G17330.1 | 58.639 | 191 | 79 | 0 | 140 | 330 | 248 | 438 | 1.16e-76 | 248 |
Msa1093550 | AT3G17330.3 | 58.639 | 191 | 79 | 0 | 140 | 330 | 248 | 438 | 1.16e-76 | 248 |
Msa1093550 | AT5G58190.2 | 51.339 | 224 | 93 | 4 | 121 | 336 | 276 | 491 | 1.19e-75 | 244 |
Msa1093550 | AT5G58190.1 | 51.339 | 224 | 93 | 4 | 121 | 336 | 275 | 490 | 1.53e-75 | 243 |
Msa1093550 | AT3G13060.3 | 47.809 | 251 | 113 | 3 | 114 | 354 | 322 | 564 | 3.02e-74 | 242 |
Msa1093550 | AT3G13060.6 | 47.809 | 251 | 113 | 3 | 114 | 354 | 322 | 564 | 3.02e-74 | 242 |
Msa1093550 | AT3G13060.2 | 47.809 | 251 | 113 | 3 | 114 | 354 | 344 | 586 | 3.37e-74 | 243 |
Msa1093550 | AT3G13060.4 | 47.809 | 251 | 113 | 3 | 114 | 354 | 334 | 576 | 3.69e-74 | 243 |
Msa1093550 | AT3G03950.3 | 50.000 | 232 | 106 | 4 | 108 | 334 | 187 | 413 | 4.02e-74 | 237 |
Msa1093550 | AT3G03950.2 | 50.000 | 232 | 106 | 4 | 108 | 334 | 183 | 409 | 4.19e-74 | 237 |
Msa1093550 | AT3G03950.1 | 50.000 | 232 | 106 | 4 | 108 | 334 | 184 | 410 | 5.45e-74 | 236 |
Msa1093550 | AT5G61020.2 | 48.739 | 238 | 102 | 3 | 108 | 330 | 191 | 423 | 2.35e-73 | 237 |
Msa1093550 | AT5G61020.1 | 48.739 | 238 | 102 | 3 | 108 | 330 | 193 | 425 | 2.58e-73 | 237 |
Msa1093550 | AT1G55500.1 | 53.555 | 211 | 88 | 2 | 114 | 324 | 316 | 516 | 2.63e-73 | 238 |
Msa1093550 | AT1G55500.6 | 53.555 | 211 | 88 | 2 | 114 | 324 | 329 | 529 | 3.73e-73 | 238 |
Msa1093550 | AT1G55500.3 | 53.555 | 211 | 88 | 2 | 114 | 324 | 359 | 559 | 3.87e-73 | 239 |
Msa1093550 | AT1G55500.4 | 53.182 | 220 | 86 | 4 | 118 | 324 | 357 | 572 | 3.87e-73 | 239 |
Msa1093550 | AT1G55500.2 | 53.182 | 220 | 86 | 4 | 118 | 324 | 357 | 572 | 3.92e-73 | 239 |
Msa1093550 | AT3G13460.2 | 48.347 | 242 | 103 | 3 | 118 | 341 | 377 | 614 | 3.97e-73 | 241 |
Msa1093550 | AT3G13460.4 | 48.347 | 242 | 103 | 3 | 118 | 341 | 379 | 616 | 3.99e-73 | 241 |
Msa1093550 | AT3G13460.1 | 48.347 | 242 | 103 | 3 | 118 | 341 | 380 | 617 | 4.11e-73 | 241 |
Msa1093550 | AT1G55500.5 | 53.182 | 220 | 86 | 4 | 118 | 324 | 357 | 572 | 4.50e-73 | 239 |
Msa1093550 | AT1G27960.3 | 49.515 | 206 | 93 | 3 | 118 | 323 | 219 | 413 | 2.70e-65 | 215 |
Msa1093550 | AT1G27960.1 | 49.515 | 206 | 93 | 3 | 118 | 323 | 293 | 487 | 1.33e-64 | 215 |
Msa1093550 | AT3G13060.1 | 49.468 | 188 | 77 | 3 | 114 | 291 | 344 | 523 | 6.30e-55 | 190 |
Msa1093550 | AT3G13460.3 | 50.000 | 92 | 38 | 2 | 133 | 220 | 409 | 496 | 2.04e-19 | 90.5 |
Msa1093550 | AT3G13060.5 | 37.607 | 117 | 55 | 3 | 114 | 220 | 344 | 452 | 1.48e-15 | 78.6 |
Msa1093550 | AT1G27960.2 | 36.290 | 124 | 68 | 3 | 118 | 241 | 293 | 405 | 7.70e-15 | 76.3 |
Msa1093550 | AT4G11970.5 | 26.840 | 231 | 135 | 6 | 103 | 313 | 1 | 217 | 6.48e-14 | 73.2 |
Msa1093550 | AT4G11970.2 | 26.957 | 230 | 134 | 6 | 105 | 314 | 3 | 218 | 7.29e-14 | 72.8 |
Msa1093550 | AT4G11970.3 | 26.957 | 230 | 134 | 6 | 105 | 314 | 3 | 218 | 9.57e-14 | 72.4 |
Msa1093550 | AT4G11970.1 | 26.957 | 230 | 134 | 6 | 105 | 314 | 3 | 218 | 5.04e-13 | 70.5 |
Msa1093550 | AT4G11970.4 | 26.957 | 230 | 134 | 6 | 105 | 314 | 3 | 218 | 5.04e-13 | 70.5 |
Find 85 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTATTATATGCCACTTAAT+TGG | 0.122163 | 7_3:-13555116 | None:intergenic |
AGATCAAACCAAGAGATATT+TGG | 0.251737 | 7_3:+13556029 | Msa1093550:three_prime_UTR |
TTGATTTAGCTTCTGCGTTT+TGG | 0.256390 | 7_3:-13554697 | None:intergenic |
AAATTTATAATAACAATTCT+AGG | 0.261214 | 7_3:-13553093 | None:intergenic |
TACTTGAGTCAATCAGATTA+AGG | 0.280024 | 7_3:+13555921 | Msa1093550:three_prime_UTR |
TAGCAGTTTCATATTTAGTT+TGG | 0.294839 | 7_3:-13554568 | None:intergenic |
CCCAATCTTCCTCTTCTTCT+CGG | 0.317116 | 7_3:+13554739 | Msa1093550:CDS |
TCATATTTAGTTTGGAAATC+TGG | 0.320309 | 7_3:-13554560 | None:intergenic |
TCTTTCACAATACTAATTAC+AGG | 0.330280 | 7_3:+13554333 | Msa1093550:CDS |
TCCTTAACAACTGATGATTC+CGG | 0.338646 | 7_3:-13554497 | None:intergenic |
AGGGAATAAAATATGATGTT+TGG | 0.357963 | 7_3:+13554633 | Msa1093550:CDS |
ACCTGTTCTCATTGTTTGTA+AGG | 0.359165 | 7_3:-13555172 | None:intergenic |
TTATTATATGCCACTTAATT+GGG | 0.372548 | 7_3:-13555115 | None:intergenic |
TTGTGAAAGACATGGCTTCT+TGG | 0.385400 | 7_3:-13554320 | None:intergenic |
TCTCTGCTACTCCAACAAAT+TGG | 0.385829 | 7_3:-13555025 | None:intergenic |
TATGCTGCTCGGTAATCCTC+TGG | 0.390833 | 7_3:-13555442 | None:intergenic |
TCATTAGATACTATACCATT+TGG | 0.393991 | 7_3:-13554380 | None:intergenic |
CCTTAACAACTGATGATTCC+GGG | 0.395222 | 7_3:-13554496 | None:intergenic |
ATGTCGAAGCATTTCGTGTT+TGG | 0.395427 | 7_3:-13554289 | None:intergenic |
TGTGAAAGACATGGCTTCTT+GGG | 0.396327 | 7_3:-13554319 | None:intergenic |
CCCGGAATCATCAGTTGTTA+AGG | 0.398116 | 7_3:+13554496 | Msa1093550:CDS |
ACCGAGAAGAAGAGGAAGAT+TGG | 0.402582 | 7_3:-13554740 | None:intergenic |
AATGCAAGTGGCCAATTTGT+TGG | 0.419888 | 7_3:+13555014 | Msa1093550:CDS |
CAATGAAGATCACATTCAAA+AGG | 0.420815 | 7_3:+13554613 | Msa1093550:CDS |
TCAGGCAAAGACATCTCTAT+TGG | 0.426726 | 7_3:+13555376 | Msa1093550:CDS |
ATTGTAAACCAAATATCTCT+TGG | 0.430496 | 7_3:-13556037 | None:intergenic |
GATTGGACTAAAAGATGGTC+TGG | 0.434011 | 7_3:+13555328 | Msa1093550:intron |
CTAGTTCAGTCATGGTTGAA+TGG | 0.439966 | 7_3:-13556074 | None:intergenic |
GTTGTAAGTTCTTCGAGGGT+CGG | 0.440776 | 7_3:-13554267 | None:intergenic |
TCAGTACTATCAAAACTTGT+CGG | 0.441080 | 7_3:+13556006 | Msa1093550:three_prime_UTR |
TTTGATCAGCGTCTCATGAT+TGG | 0.450002 | 7_3:-13555727 | None:intergenic |
CCGAGAAGAAGAGGAAGATT+GGG | 0.454266 | 7_3:-13554739 | None:intergenic |
CTGTAGTTAGTAGAGGCACT+TGG | 0.483395 | 7_3:-13554356 | None:intergenic |
AATCTCTCTCTCACTCCCTC+TGG | 0.485346 | 7_3:+13555759 | Msa1093550:CDS |
TCCTTACAAACAATGAGAAC+AGG | 0.488032 | 7_3:+13555171 | Msa1093550:CDS |
AAGAAATGACTCGGGGTCCT+CGG | 0.496517 | 7_3:+13554453 | Msa1093550:CDS |
TTTGTCATCTAGTTCAGTCA+TGG | 0.498391 | 7_3:-13556082 | None:intergenic |
CTCACTCCCTCTGGAAGACA+TGG | 0.499578 | 7_3:+13555768 | Msa1093550:CDS |
CGGCTGCTGTAAAATTAGAA+TGG | 0.501961 | 7_3:-13554247 | None:intergenic |
AATGAAGATCACATTCAAAA+GGG | 0.506544 | 7_3:+13554614 | Msa1093550:CDS |
TCTACTAACTACAGACCAAA+TGG | 0.507075 | 7_3:+13554365 | Msa1093550:CDS |
ACGGATTCTTCCCAATTAAG+TGG | 0.508762 | 7_3:+13555105 | Msa1093550:CDS |
TTGCAGATTGGACTAAAAGA+TGG | 0.509143 | 7_3:+13555323 | Msa1093550:intron |
GTTGGAGTAGCAGAGATGCT+AGG | 0.509883 | 7_3:+13555032 | Msa1093550:CDS |
TTTGGTTGTAAGTTCTTCGA+GGG | 0.514819 | 7_3:-13554271 | None:intergenic |
GTTTGGTTGTAAGTTCTTCG+AGG | 0.516731 | 7_3:-13554272 | None:intergenic |
TTGAACTCACCGAGAAGAAG+AGG | 0.527322 | 7_3:-13554748 | None:intergenic |
TTGGAGTAGCAGAGATGCTA+GGG | 0.531951 | 7_3:+13555033 | Msa1093550:CDS |
GAAGCTAAATCAAGTGAGAC+AGG | 0.536998 | 7_3:+13554707 | Msa1093550:CDS |
GATCAGCGTCTCATGATTGG+TGG | 0.541226 | 7_3:-13555724 | None:intergenic |
ATGTGTCGAAACAAACAGTT+GGG | 0.547018 | 7_3:-13555146 | None:intergenic |
AGGATTACCGAGCAGCATAC+AGG | 0.552460 | 7_3:+13555446 | Msa1093550:CDS |
AGCAGAGATGCTAGGGCCGG+TGG | 0.553830 | 7_3:+13555040 | Msa1093550:CDS |
AAAGACATGGCTTCTTGGGT+TGG | 0.559310 | 7_3:-13554315 | None:intergenic |
AAGTGTCAAAAGAAATGACT+CGG | 0.565132 | 7_3:+13554444 | Msa1093550:CDS |
ACAGGTGTGTAACTTTCAGT+AGG | 0.575402 | 7_3:+13555189 | Msa1093550:CDS |
ATGCTGCTCGGTAATCCTCT+GGG | 0.580878 | 7_3:-13555441 | None:intergenic |
GATGTGTCGAAACAAACAGT+TGG | 0.582692 | 7_3:-13555147 | None:intergenic |
AGTACTGAGAAATATATACA+TGG | 0.583571 | 7_3:-13555991 | None:intergenic |
ATTTAGTTTGGAAATCTGGA+AGG | 0.584834 | 7_3:-13554556 | None:intergenic |
TCTAAAGCCATGTCTTCCAG+AGG | 0.588899 | 7_3:-13555775 | None:intergenic |
ATTTGGTCTGTAGTTAGTAG+AGG | 0.589027 | 7_3:-13554363 | None:intergenic |
TGGAAACTTGACAAATACAA+CGG | 0.589722 | 7_3:+13555086 | Msa1093550:CDS |
AAAACAGATATGCAATCAAG+TGG | 0.597901 | 7_3:+13555699 | Msa1093550:CDS |
GCAGAAGAACAAGGCAGATG+TGG | 0.598529 | 7_3:+13553976 | Msa1093550:CDS |
AACAACTGATGATTCCGGGT+TGG | 0.603971 | 7_3:-13554492 | None:intergenic |
TGTCGTGCCTGTATGCTGCT+CGG | 0.604290 | 7_3:-13555453 | None:intergenic |
AGTGTCAAAAGAAATGACTC+GGG | 0.607102 | 7_3:+13554445 | Msa1093550:CDS |
ATTAATCAGGTAAATGCAAG+TGG | 0.607713 | 7_3:+13555002 | Msa1093550:intron |
TCATAGTCAGCAGAAGAACA+AGG | 0.611480 | 7_3:+13553967 | Msa1093550:CDS |
AATTAGTATTGTGAAAGACA+TGG | 0.624561 | 7_3:-13554328 | None:intergenic |
AACGCTGACTGTGTAGCAGA+GGG | 0.626597 | 7_3:-13553223 | None:intergenic |
TTCAACTTCTTATTTCCATG+TGG | 0.626711 | 7_3:-13554665 | None:intergenic |
AGTAGCAGAGATGCTAGGGC+CGG | 0.626729 | 7_3:+13555037 | Msa1093550:CDS |
TAACGCTGACTGTGTAGCAG+AGG | 0.627646 | 7_3:-13553224 | None:intergenic |
CAGGTGTGTAACTTTCAGTA+GGG | 0.627821 | 7_3:+13555190 | Msa1093550:CDS |
GTTTGGACAAGCACTCCACA+TGG | 0.628206 | 7_3:+13554650 | Msa1093550:CDS |
CTAAAGCCATGTCTTCCAGA+GGG | 0.641953 | 7_3:-13555774 | None:intergenic |
TTTCAGTAGGGACACACAAG+AGG | 0.654133 | 7_3:+13555202 | Msa1093550:CDS |
AGAAGTTATTTCGTTCCCAG+AGG | 0.656111 | 7_3:+13555426 | Msa1093550:CDS |
AGACGCTGATCAAACTAACA+AGG | 0.658325 | 7_3:+13555736 | Msa1093550:CDS |
TCATCAAAACAATTCCAACC+CGG | 0.676336 | 7_3:+13554478 | Msa1093550:CDS |
GTACTGAGAAATATATACAT+GGG | 0.677984 | 7_3:-13555990 | None:intergenic |
GTGTCAAAAGAAATGACTCG+GGG | 0.701528 | 7_3:+13554446 | Msa1093550:CDS |
GTAAAATTAGAATGGAAACG+AGG | 0.766321 | 7_3:-13554239 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATTTATAATAACAATTCT+AGG | - | chr7_3:13553096-13553115 | None:intergenic | 10.0% |
!!! | TTATTTTTATGTTTTTCATA+TGG | + | chr7_3:13553886-13553905 | Msa1093550:intron | 10.0% |
!!! | TCAATATAATATTTAAGACA+TGG | - | chr7_3:13553317-13553336 | None:intergenic | 15.0% |
!!! | TAAATACAAAGTAATGTTTT+TGG | - | chr7_3:13553345-13553364 | None:intergenic | 15.0% |
!! | AAAAATATTCAAAAGTTATC+AGG | + | chr7_3:13555358-13555377 | Msa1093550:CDS | 15.0% |
!!! | TTAATTGGTTTCTCTTTTAT+TGG | + | chr7_3:13553861-13553880 | Msa1093550:intron | 20.0% |
!! | ACTTAAGATATTGATATTGT+TGG | + | chr7_3:13554827-13554846 | Msa1093550:intron | 20.0% |
!! | GATGAACATTCTTTATAATA+TGG | + | chr7_3:13554899-13554918 | Msa1093550:intron | 20.0% |
!!! | TATTTGTTGTCAAATTAATC+AGG | + | chr7_3:13554989-13555008 | Msa1093550:intron | 20.0% |
!!! | TCAAAAAAGACATGAAATTT+TGG | + | chr7_3:13555066-13555085 | Msa1093550:CDS | 20.0% |
!!! | TTATTATATGCCACTTAATT+GGG | - | chr7_3:13555118-13555137 | None:intergenic | 20.0% |
!!! | TTTATTATATGCCACTTAAT+TGG | - | chr7_3:13555119-13555138 | None:intergenic | 20.0% |
!! | TTATCAAACCACAAAAAATT+TGG | - | chr7_3:13555846-13555865 | None:intergenic | 20.0% |
! | ATTTGTATGCATATTGTTCT+TGG | + | chr7_3:13553413-13553432 | Msa1093550:intron | 25.0% |
! | TAAAATCCTCCTATATATAG+GGG | - | chr7_3:13553504-13553523 | None:intergenic | 25.0% |
! | CTAAAATCCTCCTATATATA+GGG | - | chr7_3:13553505-13553524 | None:intergenic | 25.0% |
! | AATCTTTCATTTGTCTGAAA+TGG | + | chr7_3:13553801-13553820 | Msa1093550:intron | 25.0% |
! | TATTTCCTAAAGAGATGAAA+GGG | - | chr7_3:13554092-13554111 | None:intergenic | 25.0% |
! | TTATTTCCTAAAGAGATGAA+AGG | - | chr7_3:13554093-13554112 | None:intergenic | 25.0% |
! | AACAACAATGACATTTCTAT+CGG | - | chr7_3:13554131-13554150 | None:intergenic | 25.0% |
! | GATTACAAAATGCATTGTTT+AGG | + | chr7_3:13554154-13554173 | Msa1093550:intron | 25.0% |
! | AATTAGTATTGTGAAAGACA+TGG | - | chr7_3:13554331-13554350 | None:intergenic | 25.0% |
! | TCTTTCACAATACTAATTAC+AGG | + | chr7_3:13554333-13554352 | Msa1093550:CDS | 25.0% |
! | TCATTAGATACTATACCATT+TGG | - | chr7_3:13554383-13554402 | None:intergenic | 25.0% |
!!! | TCATATTTAGTTTGGAAATC+TGG | - | chr7_3:13554563-13554582 | None:intergenic | 25.0% |
! | TAGCAGTTTCATATTTAGTT+TGG | - | chr7_3:13554571-13554590 | None:intergenic | 25.0% |
! | AATGAAGATCACATTCAAAA+GGG | + | chr7_3:13554614-13554633 | Msa1093550:CDS | 25.0% |
! | AGGGAATAAAATATGATGTT+TGG | + | chr7_3:13554633-13554652 | Msa1093550:CDS | 25.0% |
!!! | GCCATTTTTTTAATACAAGA+TGG | + | chr7_3:13554794-13554813 | Msa1093550:intron | 25.0% |
! | GCCATCTTGTATTAAAAAAA+TGG | - | chr7_3:13554798-13554817 | None:intergenic | 25.0% |
! | TAAGATATTGATATTGTTGG+AGG | + | chr7_3:13554830-13554849 | Msa1093550:intron | 25.0% |
!! | TATAATATGGTGTCAATGAT+TGG | + | chr7_3:13554912-13554931 | Msa1093550:intron | 25.0% |
!!! | ACTAGTTTTTAAATGTAGGA+AGG | - | chr7_3:13554951-13554970 | None:intergenic | 25.0% |
! | TTCCTACATTTAAAAACTAG+TGG | + | chr7_3:13554950-13554969 | Msa1093550:intron | 25.0% |
!!! | AACCACTAGTTTTTAAATGT+AGG | - | chr7_3:13554955-13554974 | None:intergenic | 25.0% |
! | ACCAAGAAAATACCAAAAAA+TGG | + | chr7_3:13555816-13555835 | Msa1093550:three_prime_UTR | 25.0% |
!!! | TCCATTTTTTGGTATTTTCT+TGG | - | chr7_3:13555820-13555839 | None:intergenic | 25.0% |
!!! | AAATTTGGTCATCCATTTTT+TGG | - | chr7_3:13555831-13555850 | None:intergenic | 25.0% |
! | GTACTGAGAAATATATACAT+GGG | - | chr7_3:13555993-13556012 | None:intergenic | 25.0% |
!! | AGTACTGAGAAATATATACA+TGG | - | chr7_3:13555994-13556013 | None:intergenic | 25.0% |
! | ATTGTAAACCAAATATCTCT+TGG | - | chr7_3:13556040-13556059 | None:intergenic | 25.0% |
CCTAAAATCCTCCTATATAT+AGG | - | chr7_3:13553506-13553525 | None:intergenic | 30.0% | |
! | CCTATATATAGGAGGATTTT+AGG | + | chr7_3:13553503-13553522 | Msa1093550:intron | 30.0% |
ATTAAGAGTCCAAATAAGAC+TGG | - | chr7_3:13553698-13553717 | None:intergenic | 30.0% | |
TATTTGAACGCTCATTTAAG+TGG | + | chr7_3:13553765-13553784 | Msa1093550:intron | 30.0% | |
ATAGATTGAGCTATATCACA+TGG | - | chr7_3:13553929-13553948 | None:intergenic | 30.0% | |
! | CAAAATGCATTGTTTAGGTT+TGG | + | chr7_3:13554159-13554178 | Msa1093550:intron | 30.0% |
!!! | AAGTGAATGTGTTATTTTGC+AGG | + | chr7_3:13554214-13554233 | Msa1093550:intron | 30.0% |
GTAAAATTAGAATGGAAACG+AGG | - | chr7_3:13554242-13554261 | None:intergenic | 30.0% | |
AAGTGTCAAAAGAAATGACT+CGG | + | chr7_3:13554444-13554463 | Msa1093550:CDS | 30.0% | |
!! | ATTTAGTTTGGAAATCTGGA+AGG | - | chr7_3:13554559-13554578 | None:intergenic | 30.0% |
CAATGAAGATCACATTCAAA+AGG | + | chr7_3:13554613-13554632 | Msa1093550:CDS | 30.0% | |
! | TTCAACTTCTTATTTCCATG+TGG | - | chr7_3:13554668-13554687 | None:intergenic | 30.0% |
ATTAATCAGGTAAATGCAAG+TGG | + | chr7_3:13555002-13555021 | Msa1093550:intron | 30.0% | |
TGGAAACTTGACAAATACAA+CGG | + | chr7_3:13555086-13555105 | Msa1093550:CDS | 30.0% | |
CAAAGGAAATAGAACTTACA+TGG | - | chr7_3:13555505-13555524 | None:intergenic | 30.0% | |
! | TATTCAAGTGTTCTAGACAA+AGG | - | chr7_3:13555522-13555541 | None:intergenic | 30.0% |
AAAACAGATATGCAATCAAG+TGG | + | chr7_3:13555699-13555718 | Msa1093550:CDS | 30.0% | |
! | TTTGGTATTTTCTTGGTCTA+TGG | - | chr7_3:13555813-13555832 | None:intergenic | 30.0% |
!!! | ATGGATGACCAAATTTTTTG+TGG | + | chr7_3:13555835-13555854 | Msa1093550:three_prime_UTR | 30.0% |
TACTTGAGTCAATCAGATTA+AGG | + | chr7_3:13555921-13555940 | Msa1093550:three_prime_UTR | 30.0% | |
TCAGTACTATCAAAACTTGT+CGG | + | chr7_3:13556006-13556025 | Msa1093550:three_prime_UTR | 30.0% | |
AGATCAAACCAAGAGATATT+TGG | + | chr7_3:13556029-13556048 | Msa1093550:three_prime_UTR | 30.0% | |
TAGTAACCCCTATATATAGG+AGG | + | chr7_3:13553495-13553514 | Msa1093550:intron | 35.0% | |
ACTTATACACTCCTAACTTG+GGG | - | chr7_3:13553544-13553563 | None:intergenic | 35.0% | |
GACTTATACACTCCTAACTT+GGG | - | chr7_3:13553545-13553564 | None:intergenic | 35.0% | |
AGACTTATACACTCCTAACT+TGG | - | chr7_3:13553546-13553565 | None:intergenic | 35.0% | |
! | AGTTAGGAGTGTATAAGTCT+CGG | + | chr7_3:13553546-13553565 | Msa1093550:intron | 35.0% |
CAAAAGAATTCCATCCTTTC+AGG | - | chr7_3:13553656-13553675 | None:intergenic | 35.0% | |
CTCATTTAAGTGGAAGAAGA+CGG | + | chr7_3:13553775-13553794 | Msa1093550:intron | 35.0% | |
TCATTTAAGTGGAAGAAGAC+GGG | + | chr7_3:13553776-13553795 | Msa1093550:intron | 35.0% | |
CCAATTAAAACCACGTTGAA+GGG | - | chr7_3:13553849-13553868 | None:intergenic | 35.0% | |
ACCAATTAAAACCACGTTGA+AGG | - | chr7_3:13553850-13553869 | None:intergenic | 35.0% | |
CTTGACTCTCTCTATGAATT+TGG | + | chr7_3:13554027-13554046 | Msa1093550:intron | 35.0% | |
TTAGACCCTTTCATCTCTTT+AGG | + | chr7_3:13554084-13554103 | Msa1093550:intron | 35.0% | |
! | AATGCATTGTTTAGGTTTGG+TGG | + | chr7_3:13554162-13554181 | Msa1093550:intron | 35.0% |
TTTGGTTGTAAGTTCTTCGA+GGG | - | chr7_3:13554274-13554293 | None:intergenic | 35.0% | |
ATTTGGTCTGTAGTTAGTAG+AGG | - | chr7_3:13554366-13554385 | None:intergenic | 35.0% | |
TCTACTAACTACAGACCAAA+TGG | + | chr7_3:13554365-13554384 | Msa1093550:CDS | 35.0% | |
AGTGTCAAAAGAAATGACTC+GGG | + | chr7_3:13554445-13554464 | Msa1093550:CDS | 35.0% | |
!!! | GAATTGTTTTGATGAAACCG+AGG | - | chr7_3:13554473-13554492 | None:intergenic | 35.0% |
TCATCAAAACAATTCCAACC+CGG | + | chr7_3:13554478-13554497 | Msa1093550:CDS | 35.0% | |
TCCTTAACAACTGATGATTC+CGG | - | chr7_3:13554500-13554519 | None:intergenic | 35.0% | |
!! | TTGATTTAGCTTCTGCGTTT+TGG | - | chr7_3:13554700-13554719 | None:intergenic | 35.0% |
AAAAATGGCAAGCGAAAACT+TGG | - | chr7_3:13554783-13554802 | None:intergenic | 35.0% | |
!!! | ATGTCTTTTTTGAAGTCCAC+CGG | - | chr7_3:13555059-13555078 | None:intergenic | 35.0% |
ATGTGTCGAAACAAACAGTT+GGG | - | chr7_3:13555149-13555168 | None:intergenic | 35.0% | |
TCCTTACAAACAATGAGAAC+AGG | + | chr7_3:13555171-13555190 | Msa1093550:CDS | 35.0% | |
ACCTGTTCTCATTGTTTGTA+AGG | - | chr7_3:13555175-13555194 | None:intergenic | 35.0% | |
! | TTCATCTTTTATAGAGTCCG+AGG | + | chr7_3:13555257-13555276 | Msa1093550:intron | 35.0% |
! | TCATCTTTTATAGAGTCCGA+GGG | + | chr7_3:13555258-13555277 | Msa1093550:intron | 35.0% |
TTGCAGATTGGACTAAAAGA+TGG | + | chr7_3:13555323-13555342 | Msa1093550:intron | 35.0% | |
! | TTTTCTGCAGAACACTATGA+AGG | + | chr7_3:13555665-13555684 | Msa1093550:intron | 35.0% |
! | TTTGTCATCTAGTTCAGTCA+TGG | - | chr7_3:13556085-13556104 | None:intergenic | 35.0% |
ACTAGTGAACGACTCATTGT+TGG | - | chr7_3:13553457-13553476 | None:intergenic | 40.0% | |
GTTCACTAGTCATTGTGTGT+TGG | + | chr7_3:13553467-13553486 | Msa1093550:intron | 40.0% | |
! | ACTAGTCATTGTGTGTTGGT+TGG | + | chr7_3:13553471-13553490 | Msa1093550:intron | 40.0% |
GGCTAGTAACCCCTATATAT+AGG | + | chr7_3:13553492-13553511 | Msa1093550:intron | 40.0% | |
TTTACCTTGTTCCCCAAGTT+AGG | + | chr7_3:13553530-13553549 | Msa1093550:intron | 40.0% | |
AGTGTATAAGTCTCGGATGA+TGG | + | chr7_3:13553553-13553572 | Msa1093550:intron | 40.0% | |
GTGTATAAGTCTCGGATGAT+GGG | + | chr7_3:13553554-13553573 | Msa1093550:intron | 40.0% | |
!! | GGATGATGGGTTCTTAAGTT+CGG | + | chr7_3:13553567-13553586 | Msa1093550:intron | 40.0% |
TCATAATCGCCTAAGCCTAA+TGG | - | chr7_3:13553593-13553612 | None:intergenic | 40.0% | |
ATTAGGCTTAGGCGATTATG+AGG | + | chr7_3:13553592-13553611 | Msa1093550:intron | 40.0% | |
GAGTCCAAATAAGACTGGAA+GGG | - | chr7_3:13553693-13553712 | None:intergenic | 40.0% | |
AGAGTCCAAATAAGACTGGA+AGG | - | chr7_3:13553694-13553713 | None:intergenic | 40.0% | |
!!! | CCCTTCAACGTGGTTTTAAT+TGG | + | chr7_3:13553846-13553865 | Msa1093550:intron | 40.0% |
TCATAGTCAGCAGAAGAACA+AGG | + | chr7_3:13553967-13553986 | Msa1093550:CDS | 40.0% | |
GAGTCAAGAAAGTTGCCAAT+AGG | - | chr7_3:13554015-13554034 | None:intergenic | 40.0% | |
CGGCTGCTGTAAAATTAGAA+TGG | - | chr7_3:13554250-13554269 | None:intergenic | 40.0% | |
GTTTGGTTGTAAGTTCTTCG+AGG | - | chr7_3:13554275-13554294 | None:intergenic | 40.0% | |
! | ATGTCGAAGCATTTCGTGTT+TGG | - | chr7_3:13554292-13554311 | None:intergenic | 40.0% |
TGTGAAAGACATGGCTTCTT+GGG | - | chr7_3:13554322-13554341 | None:intergenic | 40.0% | |
TTGTGAAAGACATGGCTTCT+TGG | - | chr7_3:13554323-13554342 | None:intergenic | 40.0% | |
GTGTCAAAAGAAATGACTCG+GGG | + | chr7_3:13554446-13554465 | Msa1093550:CDS | 40.0% | |
CCTTAACAACTGATGATTCC+GGG | - | chr7_3:13554499-13554518 | None:intergenic | 40.0% | |
GAAGCTAAATCAAGTGAGAC+AGG | + | chr7_3:13554707-13554726 | Msa1093550:CDS | 40.0% | |
AATGCAAGTGGCCAATTTGT+TGG | + | chr7_3:13555014-13555033 | Msa1093550:CDS | 40.0% | |
TCTCTGCTACTCCAACAAAT+TGG | - | chr7_3:13555028-13555047 | None:intergenic | 40.0% | |
ACGGATTCTTCCCAATTAAG+TGG | + | chr7_3:13555105-13555124 | Msa1093550:CDS | 40.0% | |
GATGTGTCGAAACAAACAGT+TGG | - | chr7_3:13555150-13555169 | None:intergenic | 40.0% | |
ACAGGTGTGTAACTTTCAGT+AGG | + | chr7_3:13555189-13555208 | Msa1093550:CDS | 40.0% | |
CAGGTGTGTAACTTTCAGTA+GGG | + | chr7_3:13555190-13555209 | Msa1093550:CDS | 40.0% | |
GATTGGACTAAAAGATGGTC+TGG | + | chr7_3:13555328-13555347 | Msa1093550:intron | 40.0% | |
TCAGGCAAAGACATCTCTAT+TGG | + | chr7_3:13555376-13555395 | Msa1093550:CDS | 40.0% | |
! | AGAAGTTATTTCGTTCCCAG+AGG | + | chr7_3:13555426-13555445 | Msa1093550:CDS | 40.0% |
GAGAAGCTGATAAGTAGCTA+CGG | - | chr7_3:13555559-13555578 | None:intergenic | 40.0% | |
TTTGATCAGCGTCTCATGAT+TGG | - | chr7_3:13555730-13555749 | None:intergenic | 40.0% | |
AGACGCTGATCAAACTAACA+AGG | + | chr7_3:13555736-13555755 | Msa1093550:CDS | 40.0% | |
CTAGTTCAGTCATGGTTGAA+TGG | - | chr7_3:13556077-13556096 | None:intergenic | 40.0% | |
! | TGAACGACTCATTGTTGGCT+AGG | - | chr7_3:13553452-13553471 | None:intergenic | 45.0% |
GGTTCTTAAGTTCGGCCATT+AGG | + | chr7_3:13553575-13553594 | Msa1093550:intron | 45.0% | |
TAAGTTCGGCCATTAGGCTT+AGG | + | chr7_3:13553581-13553600 | Msa1093550:intron | 45.0% | |
AGGCGATTATGAGGAGGATA+CGG | + | chr7_3:13553601-13553620 | Msa1093550:intron | 45.0% | |
TCCTTTCAGGCTTCATGCTT+GGG | - | chr7_3:13553643-13553662 | None:intergenic | 45.0% | |
ATCCTTTCAGGCTTCATGCT+TGG | - | chr7_3:13553644-13553663 | None:intergenic | 45.0% | |
AAGCATGAAGCCTGAAAGGA+TGG | + | chr7_3:13553643-13553662 | Msa1093550:intron | 45.0% | |
!! | CATGCCCTTCCAGTCTTATT+TGG | + | chr7_3:13553686-13553705 | Msa1093550:intron | 45.0% |
AATCAGTAGACCCTTCAACG+TGG | + | chr7_3:13553836-13553855 | Msa1093550:intron | 45.0% | |
AACAAGGCAGATGTGGTATG+TGG | + | chr7_3:13553983-13554002 | Msa1093550:intron | 45.0% | |
GTTGTAAGTTCTTCGAGGGT+CGG | - | chr7_3:13554270-13554289 | None:intergenic | 45.0% | |
AAAGACATGGCTTCTTGGGT+TGG | - | chr7_3:13554318-13554337 | None:intergenic | 45.0% | |
!! | CTGTAGTTAGTAGAGGCACT+TGG | - | chr7_3:13554359-13554378 | None:intergenic | 45.0% |
AACAACTGATGATTCCGGGT+TGG | - | chr7_3:13554495-13554514 | None:intergenic | 45.0% | |
CCCGGAATCATCAGTTGTTA+AGG | + | chr7_3:13554496-13554515 | Msa1093550:CDS | 45.0% | |
CCGAGAAGAAGAGGAAGATT+GGG | - | chr7_3:13554742-13554761 | None:intergenic | 45.0% | |
CCCAATCTTCCTCTTCTTCT+CGG | + | chr7_3:13554739-13554758 | Msa1093550:CDS | 45.0% | |
ACCGAGAAGAAGAGGAAGAT+TGG | - | chr7_3:13554743-13554762 | None:intergenic | 45.0% | |
TTGAACTCACCGAGAAGAAG+AGG | - | chr7_3:13554751-13554770 | None:intergenic | 45.0% | |
TTGGAGTAGCAGAGATGCTA+GGG | + | chr7_3:13555033-13555052 | Msa1093550:CDS | 45.0% | |
TTTCAGTAGGGACACACAAG+AGG | + | chr7_3:13555202-13555221 | Msa1093550:CDS | 45.0% | |
TACGCGACAACTATATCCCT+CGG | - | chr7_3:13555277-13555296 | None:intergenic | 45.0% | |
! | CGACACTCTTGTTTGCAGAT+TGG | + | chr7_3:13555311-13555330 | Msa1093550:intron | 45.0% |
CTAAAGCCATGTCTTCCAGA+GGG | - | chr7_3:13555777-13555796 | None:intergenic | 45.0% | |
! | TCTAAAGCCATGTCTTCCAG+AGG | - | chr7_3:13555778-13555797 | None:intergenic | 45.0% |
! | AACGCTGACTGTGTAGCAGA+GGG | - | chr7_3:13553226-13553245 | None:intergenic | 50.0% |
! | TAACGCTGACTGTGTAGCAG+AGG | - | chr7_3:13553227-13553246 | None:intergenic | 50.0% |
CACTCCTAACTTGGGGAACA+AGG | - | chr7_3:13553537-13553556 | None:intergenic | 50.0% | |
AGGCTTAGGCGATTATGAGG+AGG | + | chr7_3:13553595-13553614 | Msa1093550:intron | 50.0% | |
GGCGATTATGAGGAGGATAC+GGG | + | chr7_3:13553602-13553621 | Msa1093550:intron | 50.0% | |
CTTTCAGGCTTCATGCTTGG+GGG | - | chr7_3:13553641-13553660 | None:intergenic | 50.0% | |
CCTTTCAGGCTTCATGCTTG+GGG | - | chr7_3:13553642-13553661 | None:intergenic | 50.0% | |
GCAGAAGAACAAGGCAGATG+TGG | + | chr7_3:13553976-13553995 | Msa1093550:CDS | 50.0% | |
GGTATGTGGTGACTGCCTAT+TGG | + | chr7_3:13553997-13554016 | Msa1093550:intron | 50.0% | |
! | AAGAAATGACTCGGGGTCCT+CGG | + | chr7_3:13554453-13554472 | Msa1093550:CDS | 50.0% |
GTTTGGACAAGCACTCCACA+TGG | + | chr7_3:13554650-13554669 | Msa1093550:CDS | 50.0% | |
GTTGGAGTAGCAGAGATGCT+AGG | + | chr7_3:13555032-13555051 | Msa1093550:CDS | 50.0% | |
ATGCTGCTCGGTAATCCTCT+GGG | - | chr7_3:13555444-13555463 | None:intergenic | 50.0% | |
TATGCTGCTCGGTAATCCTC+TGG | - | chr7_3:13555445-13555464 | None:intergenic | 50.0% | |
AGGATTACCGAGCAGCATAC+AGG | + | chr7_3:13555446-13555465 | Msa1093550:CDS | 50.0% | |
GATCAGCGTCTCATGATTGG+TGG | - | chr7_3:13555727-13555746 | None:intergenic | 50.0% | |
AATCTCTCTCTCACTCCCTC+TGG | + | chr7_3:13555759-13555778 | Msa1093550:CDS | 50.0% | |
TGCTTGGGGGTCTATGGAGT+CGG | - | chr7_3:13553628-13553647 | None:intergenic | 55.0% | |
GCTTCATGCTTGGGGGTCTA+TGG | - | chr7_3:13553634-13553653 | None:intergenic | 55.0% | |
CCCCAAGCATGAAGCCTGAA+AGG | + | chr7_3:13553639-13553658 | Msa1093550:intron | 55.0% | |
AGTAGCAGAGATGCTAGGGC+CGG | + | chr7_3:13555037-13555056 | Msa1093550:CDS | 55.0% | |
TGTCGTGCCTGTATGCTGCT+CGG | - | chr7_3:13555456-13555475 | None:intergenic | 55.0% | |
! | CTCACTCCCTCTGGAAGACA+TGG | + | chr7_3:13555768-13555787 | Msa1093550:CDS | 55.0% |
AGCAGAGATGCTAGGGCCGG+TGG | + | chr7_3:13555040-13555059 | Msa1093550:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_3 | gene | 13553070 | 13556125 | 13553070 | ID=Msa1093550;Name=Msa1093550 |
chr7_3 | mRNA | 13553070 | 13556125 | 13553070 | ID=Msa1093550-mRNA-1;Parent=Msa1093550;Name=Msa1093550-mRNA-1;_AED=0.22;_eAED=0.22;_QI=127|1|1|1|0.8|0.83|6|325|390 |
chr7_3 | exon | 13553070 | 13553269 | 13553070 | ID=Msa1093550-mRNA-1:exon:3226;Parent=Msa1093550-mRNA-1 |
chr7_3 | exon | 13553939 | 13553997 | 13553939 | ID=Msa1093550-mRNA-1:exon:3227;Parent=Msa1093550-mRNA-1 |
chr7_3 | exon | 13554236 | 13554760 | 13554236 | ID=Msa1093550-mRNA-1:exon:3228;Parent=Msa1093550-mRNA-1 |
chr7_3 | exon | 13555011 | 13555223 | 13555011 | ID=Msa1093550-mRNA-1:exon:3229;Parent=Msa1093550-mRNA-1 |
chr7_3 | exon | 13555329 | 13555505 | 13555329 | ID=Msa1093550-mRNA-1:exon:3230;Parent=Msa1093550-mRNA-1 |
chr7_3 | exon | 13555675 | 13556125 | 13555675 | ID=Msa1093550-mRNA-1:exon:3231;Parent=Msa1093550-mRNA-1 |
chr7_3 | five_prime_UTR | 13553070 | 13553196 | 13553070 | ID=Msa1093550-mRNA-1:five_prime_utr;Parent=Msa1093550-mRNA-1 |
chr7_3 | CDS | 13553197 | 13553269 | 13553197 | ID=Msa1093550-mRNA-1:cds;Parent=Msa1093550-mRNA-1 |
chr7_3 | CDS | 13553939 | 13553997 | 13553939 | ID=Msa1093550-mRNA-1:cds;Parent=Msa1093550-mRNA-1 |
chr7_3 | CDS | 13554236 | 13554760 | 13554236 | ID=Msa1093550-mRNA-1:cds;Parent=Msa1093550-mRNA-1 |
chr7_3 | CDS | 13555011 | 13555223 | 13555011 | ID=Msa1093550-mRNA-1:cds;Parent=Msa1093550-mRNA-1 |
chr7_3 | CDS | 13555329 | 13555505 | 13555329 | ID=Msa1093550-mRNA-1:cds;Parent=Msa1093550-mRNA-1 |
chr7_3 | CDS | 13555675 | 13555800 | 13555675 | ID=Msa1093550-mRNA-1:cds;Parent=Msa1093550-mRNA-1 |
chr7_3 | three_prime_UTR | 13555801 | 13556125 | 13555801 | ID=Msa1093550-mRNA-1:three_prime_utr;Parent=Msa1093550-mRNA-1 |
Gene Sequence |
Protein sequence |