AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1093550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1093550 MtrunA17_Chr2g0277111 82.203 354 52 3 45 390 157 507 0.0 593
Msa1093550 MtrunA17_Chr2g0309651 46.178 314 152 7 34 340 251 554 2.56e-87 275
Msa1093550 MtrunA17_Chr4g0069011 63.441 186 68 0 145 330 315 500 3.81e-80 258
Msa1093550 MtrunA17_Chr2g0293641 55.111 225 94 2 113 330 310 534 1.89e-78 255
Msa1093550 MtrunA17_Chr4g0000071 44.599 287 140 5 114 385 341 623 2.10e-73 240
Msa1093550 MtrunA17_Chr7g0253191 40.805 348 151 11 64 384 331 650 1.81e-71 236
Msa1093550 MtrunA17_Chr6g0461531 54.255 188 82 1 147 334 400 583 2.30e-68 228
Msa1093550 MtrunA17_Chr8g0380431 59.091 154 59 1 138 291 397 546 1.18e-57 197
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1093550 AT1G09810.2 52.075 265 114 4 109 370 133 387 1.51e-87 271
Msa1093550 AT1G09810.3 52.075 265 114 4 109 370 156 410 2.07e-87 272
Msa1093550 AT1G09810.1 58.222 225 91 2 109 330 175 399 2.10e-87 273
Msa1093550 AT1G79270.2 62.766 188 70 0 144 331 288 475 1.47e-84 266
Msa1093550 AT1G79270.4 62.766 188 70 0 144 331 288 475 1.47e-84 266
Msa1093550 AT1G79270.3 62.766 188 70 0 144 331 288 475 1.47e-84 266
Msa1093550 AT1G79270.1 62.766 188 70 0 144 331 303 490 2.35e-84 266
Msa1093550 AT3G17330.2 58.639 191 79 0 140 330 146 336 5.89e-78 249
Msa1093550 AT1G48110.2 58.639 191 79 0 140 330 299 489 9.59e-77 249
Msa1093550 AT1G48110.1 58.639 191 79 0 140 330 299 489 9.59e-77 249
Msa1093550 AT3G17330.1 58.639 191 79 0 140 330 248 438 1.16e-76 248
Msa1093550 AT3G17330.3 58.639 191 79 0 140 330 248 438 1.16e-76 248
Msa1093550 AT5G58190.2 51.339 224 93 4 121 336 276 491 1.19e-75 244
Msa1093550 AT5G58190.1 51.339 224 93 4 121 336 275 490 1.53e-75 243
Msa1093550 AT3G13060.3 47.809 251 113 3 114 354 322 564 3.02e-74 242
Msa1093550 AT3G13060.6 47.809 251 113 3 114 354 322 564 3.02e-74 242
Msa1093550 AT3G13060.2 47.809 251 113 3 114 354 344 586 3.37e-74 243
Msa1093550 AT3G13060.4 47.809 251 113 3 114 354 334 576 3.69e-74 243
Msa1093550 AT3G03950.3 50.000 232 106 4 108 334 187 413 4.02e-74 237
Msa1093550 AT3G03950.2 50.000 232 106 4 108 334 183 409 4.19e-74 237
Msa1093550 AT3G03950.1 50.000 232 106 4 108 334 184 410 5.45e-74 236
Msa1093550 AT5G61020.2 48.739 238 102 3 108 330 191 423 2.35e-73 237
Msa1093550 AT5G61020.1 48.739 238 102 3 108 330 193 425 2.58e-73 237
Msa1093550 AT1G55500.1 53.555 211 88 2 114 324 316 516 2.63e-73 238
Msa1093550 AT1G55500.6 53.555 211 88 2 114 324 329 529 3.73e-73 238
Msa1093550 AT1G55500.3 53.555 211 88 2 114 324 359 559 3.87e-73 239
Msa1093550 AT1G55500.4 53.182 220 86 4 118 324 357 572 3.87e-73 239
Msa1093550 AT1G55500.2 53.182 220 86 4 118 324 357 572 3.92e-73 239
Msa1093550 AT3G13460.2 48.347 242 103 3 118 341 377 614 3.97e-73 241
Msa1093550 AT3G13460.4 48.347 242 103 3 118 341 379 616 3.99e-73 241
Msa1093550 AT3G13460.1 48.347 242 103 3 118 341 380 617 4.11e-73 241
Msa1093550 AT1G55500.5 53.182 220 86 4 118 324 357 572 4.50e-73 239
Msa1093550 AT1G27960.3 49.515 206 93 3 118 323 219 413 2.70e-65 215
Msa1093550 AT1G27960.1 49.515 206 93 3 118 323 293 487 1.33e-64 215
Msa1093550 AT3G13060.1 49.468 188 77 3 114 291 344 523 6.30e-55 190
Msa1093550 AT3G13460.3 50.000 92 38 2 133 220 409 496 2.04e-19 90.5
Msa1093550 AT3G13060.5 37.607 117 55 3 114 220 344 452 1.48e-15 78.6
Msa1093550 AT1G27960.2 36.290 124 68 3 118 241 293 405 7.70e-15 76.3
Msa1093550 AT4G11970.5 26.840 231 135 6 103 313 1 217 6.48e-14 73.2
Msa1093550 AT4G11970.2 26.957 230 134 6 105 314 3 218 7.29e-14 72.8
Msa1093550 AT4G11970.3 26.957 230 134 6 105 314 3 218 9.57e-14 72.4
Msa1093550 AT4G11970.1 26.957 230 134 6 105 314 3 218 5.04e-13 70.5
Msa1093550 AT4G11970.4 26.957 230 134 6 105 314 3 218 5.04e-13 70.5

Find 85 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATTATATGCCACTTAAT+TGG 0.122163 7_3:-13555116 None:intergenic
AGATCAAACCAAGAGATATT+TGG 0.251737 7_3:+13556029 Msa1093550:three_prime_UTR
TTGATTTAGCTTCTGCGTTT+TGG 0.256390 7_3:-13554697 None:intergenic
AAATTTATAATAACAATTCT+AGG 0.261214 7_3:-13553093 None:intergenic
TACTTGAGTCAATCAGATTA+AGG 0.280024 7_3:+13555921 Msa1093550:three_prime_UTR
TAGCAGTTTCATATTTAGTT+TGG 0.294839 7_3:-13554568 None:intergenic
CCCAATCTTCCTCTTCTTCT+CGG 0.317116 7_3:+13554739 Msa1093550:CDS
TCATATTTAGTTTGGAAATC+TGG 0.320309 7_3:-13554560 None:intergenic
TCTTTCACAATACTAATTAC+AGG 0.330280 7_3:+13554333 Msa1093550:CDS
TCCTTAACAACTGATGATTC+CGG 0.338646 7_3:-13554497 None:intergenic
AGGGAATAAAATATGATGTT+TGG 0.357963 7_3:+13554633 Msa1093550:CDS
ACCTGTTCTCATTGTTTGTA+AGG 0.359165 7_3:-13555172 None:intergenic
TTATTATATGCCACTTAATT+GGG 0.372548 7_3:-13555115 None:intergenic
TTGTGAAAGACATGGCTTCT+TGG 0.385400 7_3:-13554320 None:intergenic
TCTCTGCTACTCCAACAAAT+TGG 0.385829 7_3:-13555025 None:intergenic
TATGCTGCTCGGTAATCCTC+TGG 0.390833 7_3:-13555442 None:intergenic
TCATTAGATACTATACCATT+TGG 0.393991 7_3:-13554380 None:intergenic
CCTTAACAACTGATGATTCC+GGG 0.395222 7_3:-13554496 None:intergenic
ATGTCGAAGCATTTCGTGTT+TGG 0.395427 7_3:-13554289 None:intergenic
TGTGAAAGACATGGCTTCTT+GGG 0.396327 7_3:-13554319 None:intergenic
CCCGGAATCATCAGTTGTTA+AGG 0.398116 7_3:+13554496 Msa1093550:CDS
ACCGAGAAGAAGAGGAAGAT+TGG 0.402582 7_3:-13554740 None:intergenic
AATGCAAGTGGCCAATTTGT+TGG 0.419888 7_3:+13555014 Msa1093550:CDS
CAATGAAGATCACATTCAAA+AGG 0.420815 7_3:+13554613 Msa1093550:CDS
TCAGGCAAAGACATCTCTAT+TGG 0.426726 7_3:+13555376 Msa1093550:CDS
ATTGTAAACCAAATATCTCT+TGG 0.430496 7_3:-13556037 None:intergenic
GATTGGACTAAAAGATGGTC+TGG 0.434011 7_3:+13555328 Msa1093550:intron
CTAGTTCAGTCATGGTTGAA+TGG 0.439966 7_3:-13556074 None:intergenic
GTTGTAAGTTCTTCGAGGGT+CGG 0.440776 7_3:-13554267 None:intergenic
TCAGTACTATCAAAACTTGT+CGG 0.441080 7_3:+13556006 Msa1093550:three_prime_UTR
TTTGATCAGCGTCTCATGAT+TGG 0.450002 7_3:-13555727 None:intergenic
CCGAGAAGAAGAGGAAGATT+GGG 0.454266 7_3:-13554739 None:intergenic
CTGTAGTTAGTAGAGGCACT+TGG 0.483395 7_3:-13554356 None:intergenic
AATCTCTCTCTCACTCCCTC+TGG 0.485346 7_3:+13555759 Msa1093550:CDS
TCCTTACAAACAATGAGAAC+AGG 0.488032 7_3:+13555171 Msa1093550:CDS
AAGAAATGACTCGGGGTCCT+CGG 0.496517 7_3:+13554453 Msa1093550:CDS
TTTGTCATCTAGTTCAGTCA+TGG 0.498391 7_3:-13556082 None:intergenic
CTCACTCCCTCTGGAAGACA+TGG 0.499578 7_3:+13555768 Msa1093550:CDS
CGGCTGCTGTAAAATTAGAA+TGG 0.501961 7_3:-13554247 None:intergenic
AATGAAGATCACATTCAAAA+GGG 0.506544 7_3:+13554614 Msa1093550:CDS
TCTACTAACTACAGACCAAA+TGG 0.507075 7_3:+13554365 Msa1093550:CDS
ACGGATTCTTCCCAATTAAG+TGG 0.508762 7_3:+13555105 Msa1093550:CDS
TTGCAGATTGGACTAAAAGA+TGG 0.509143 7_3:+13555323 Msa1093550:intron
GTTGGAGTAGCAGAGATGCT+AGG 0.509883 7_3:+13555032 Msa1093550:CDS
TTTGGTTGTAAGTTCTTCGA+GGG 0.514819 7_3:-13554271 None:intergenic
GTTTGGTTGTAAGTTCTTCG+AGG 0.516731 7_3:-13554272 None:intergenic
TTGAACTCACCGAGAAGAAG+AGG 0.527322 7_3:-13554748 None:intergenic
TTGGAGTAGCAGAGATGCTA+GGG 0.531951 7_3:+13555033 Msa1093550:CDS
GAAGCTAAATCAAGTGAGAC+AGG 0.536998 7_3:+13554707 Msa1093550:CDS
GATCAGCGTCTCATGATTGG+TGG 0.541226 7_3:-13555724 None:intergenic
ATGTGTCGAAACAAACAGTT+GGG 0.547018 7_3:-13555146 None:intergenic
AGGATTACCGAGCAGCATAC+AGG 0.552460 7_3:+13555446 Msa1093550:CDS
AGCAGAGATGCTAGGGCCGG+TGG 0.553830 7_3:+13555040 Msa1093550:CDS
AAAGACATGGCTTCTTGGGT+TGG 0.559310 7_3:-13554315 None:intergenic
AAGTGTCAAAAGAAATGACT+CGG 0.565132 7_3:+13554444 Msa1093550:CDS
ACAGGTGTGTAACTTTCAGT+AGG 0.575402 7_3:+13555189 Msa1093550:CDS
ATGCTGCTCGGTAATCCTCT+GGG 0.580878 7_3:-13555441 None:intergenic
GATGTGTCGAAACAAACAGT+TGG 0.582692 7_3:-13555147 None:intergenic
AGTACTGAGAAATATATACA+TGG 0.583571 7_3:-13555991 None:intergenic
ATTTAGTTTGGAAATCTGGA+AGG 0.584834 7_3:-13554556 None:intergenic
TCTAAAGCCATGTCTTCCAG+AGG 0.588899 7_3:-13555775 None:intergenic
ATTTGGTCTGTAGTTAGTAG+AGG 0.589027 7_3:-13554363 None:intergenic
TGGAAACTTGACAAATACAA+CGG 0.589722 7_3:+13555086 Msa1093550:CDS
AAAACAGATATGCAATCAAG+TGG 0.597901 7_3:+13555699 Msa1093550:CDS
GCAGAAGAACAAGGCAGATG+TGG 0.598529 7_3:+13553976 Msa1093550:CDS
AACAACTGATGATTCCGGGT+TGG 0.603971 7_3:-13554492 None:intergenic
TGTCGTGCCTGTATGCTGCT+CGG 0.604290 7_3:-13555453 None:intergenic
AGTGTCAAAAGAAATGACTC+GGG 0.607102 7_3:+13554445 Msa1093550:CDS
ATTAATCAGGTAAATGCAAG+TGG 0.607713 7_3:+13555002 Msa1093550:intron
TCATAGTCAGCAGAAGAACA+AGG 0.611480 7_3:+13553967 Msa1093550:CDS
AATTAGTATTGTGAAAGACA+TGG 0.624561 7_3:-13554328 None:intergenic
AACGCTGACTGTGTAGCAGA+GGG 0.626597 7_3:-13553223 None:intergenic
TTCAACTTCTTATTTCCATG+TGG 0.626711 7_3:-13554665 None:intergenic
AGTAGCAGAGATGCTAGGGC+CGG 0.626729 7_3:+13555037 Msa1093550:CDS
TAACGCTGACTGTGTAGCAG+AGG 0.627646 7_3:-13553224 None:intergenic
CAGGTGTGTAACTTTCAGTA+GGG 0.627821 7_3:+13555190 Msa1093550:CDS
GTTTGGACAAGCACTCCACA+TGG 0.628206 7_3:+13554650 Msa1093550:CDS
CTAAAGCCATGTCTTCCAGA+GGG 0.641953 7_3:-13555774 None:intergenic
TTTCAGTAGGGACACACAAG+AGG 0.654133 7_3:+13555202 Msa1093550:CDS
AGAAGTTATTTCGTTCCCAG+AGG 0.656111 7_3:+13555426 Msa1093550:CDS
AGACGCTGATCAAACTAACA+AGG 0.658325 7_3:+13555736 Msa1093550:CDS
TCATCAAAACAATTCCAACC+CGG 0.676336 7_3:+13554478 Msa1093550:CDS
GTACTGAGAAATATATACAT+GGG 0.677984 7_3:-13555990 None:intergenic
GTGTCAAAAGAAATGACTCG+GGG 0.701528 7_3:+13554446 Msa1093550:CDS
GTAAAATTAGAATGGAAACG+AGG 0.766321 7_3:-13554239 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTATAATAACAATTCT+AGG - chr7_3:13553096-13553115 None:intergenic 10.0%
!!! TTATTTTTATGTTTTTCATA+TGG + chr7_3:13553886-13553905 Msa1093550:intron 10.0%
!!! TCAATATAATATTTAAGACA+TGG - chr7_3:13553317-13553336 None:intergenic 15.0%
!!! TAAATACAAAGTAATGTTTT+TGG - chr7_3:13553345-13553364 None:intergenic 15.0%
!! AAAAATATTCAAAAGTTATC+AGG + chr7_3:13555358-13555377 Msa1093550:CDS 15.0%
!!! TTAATTGGTTTCTCTTTTAT+TGG + chr7_3:13553861-13553880 Msa1093550:intron 20.0%
!! ACTTAAGATATTGATATTGT+TGG + chr7_3:13554827-13554846 Msa1093550:intron 20.0%
!! GATGAACATTCTTTATAATA+TGG + chr7_3:13554899-13554918 Msa1093550:intron 20.0%
!!! TATTTGTTGTCAAATTAATC+AGG + chr7_3:13554989-13555008 Msa1093550:intron 20.0%
!!! TCAAAAAAGACATGAAATTT+TGG + chr7_3:13555066-13555085 Msa1093550:CDS 20.0%
!!! TTATTATATGCCACTTAATT+GGG - chr7_3:13555118-13555137 None:intergenic 20.0%
!!! TTTATTATATGCCACTTAAT+TGG - chr7_3:13555119-13555138 None:intergenic 20.0%
!! TTATCAAACCACAAAAAATT+TGG - chr7_3:13555846-13555865 None:intergenic 20.0%
! ATTTGTATGCATATTGTTCT+TGG + chr7_3:13553413-13553432 Msa1093550:intron 25.0%
! TAAAATCCTCCTATATATAG+GGG - chr7_3:13553504-13553523 None:intergenic 25.0%
! CTAAAATCCTCCTATATATA+GGG - chr7_3:13553505-13553524 None:intergenic 25.0%
! AATCTTTCATTTGTCTGAAA+TGG + chr7_3:13553801-13553820 Msa1093550:intron 25.0%
! TATTTCCTAAAGAGATGAAA+GGG - chr7_3:13554092-13554111 None:intergenic 25.0%
! TTATTTCCTAAAGAGATGAA+AGG - chr7_3:13554093-13554112 None:intergenic 25.0%
! AACAACAATGACATTTCTAT+CGG - chr7_3:13554131-13554150 None:intergenic 25.0%
! GATTACAAAATGCATTGTTT+AGG + chr7_3:13554154-13554173 Msa1093550:intron 25.0%
! AATTAGTATTGTGAAAGACA+TGG - chr7_3:13554331-13554350 None:intergenic 25.0%
! TCTTTCACAATACTAATTAC+AGG + chr7_3:13554333-13554352 Msa1093550:CDS 25.0%
! TCATTAGATACTATACCATT+TGG - chr7_3:13554383-13554402 None:intergenic 25.0%
!!! TCATATTTAGTTTGGAAATC+TGG - chr7_3:13554563-13554582 None:intergenic 25.0%
! TAGCAGTTTCATATTTAGTT+TGG - chr7_3:13554571-13554590 None:intergenic 25.0%
! AATGAAGATCACATTCAAAA+GGG + chr7_3:13554614-13554633 Msa1093550:CDS 25.0%
! AGGGAATAAAATATGATGTT+TGG + chr7_3:13554633-13554652 Msa1093550:CDS 25.0%
!!! GCCATTTTTTTAATACAAGA+TGG + chr7_3:13554794-13554813 Msa1093550:intron 25.0%
! GCCATCTTGTATTAAAAAAA+TGG - chr7_3:13554798-13554817 None:intergenic 25.0%
! TAAGATATTGATATTGTTGG+AGG + chr7_3:13554830-13554849 Msa1093550:intron 25.0%
!! TATAATATGGTGTCAATGAT+TGG + chr7_3:13554912-13554931 Msa1093550:intron 25.0%
!!! ACTAGTTTTTAAATGTAGGA+AGG - chr7_3:13554951-13554970 None:intergenic 25.0%
! TTCCTACATTTAAAAACTAG+TGG + chr7_3:13554950-13554969 Msa1093550:intron 25.0%
!!! AACCACTAGTTTTTAAATGT+AGG - chr7_3:13554955-13554974 None:intergenic 25.0%
! ACCAAGAAAATACCAAAAAA+TGG + chr7_3:13555816-13555835 Msa1093550:three_prime_UTR 25.0%
!!! TCCATTTTTTGGTATTTTCT+TGG - chr7_3:13555820-13555839 None:intergenic 25.0%
!!! AAATTTGGTCATCCATTTTT+TGG - chr7_3:13555831-13555850 None:intergenic 25.0%
! GTACTGAGAAATATATACAT+GGG - chr7_3:13555993-13556012 None:intergenic 25.0%
!! AGTACTGAGAAATATATACA+TGG - chr7_3:13555994-13556013 None:intergenic 25.0%
! ATTGTAAACCAAATATCTCT+TGG - chr7_3:13556040-13556059 None:intergenic 25.0%
CCTAAAATCCTCCTATATAT+AGG - chr7_3:13553506-13553525 None:intergenic 30.0%
! CCTATATATAGGAGGATTTT+AGG + chr7_3:13553503-13553522 Msa1093550:intron 30.0%
ATTAAGAGTCCAAATAAGAC+TGG - chr7_3:13553698-13553717 None:intergenic 30.0%
TATTTGAACGCTCATTTAAG+TGG + chr7_3:13553765-13553784 Msa1093550:intron 30.0%
ATAGATTGAGCTATATCACA+TGG - chr7_3:13553929-13553948 None:intergenic 30.0%
! CAAAATGCATTGTTTAGGTT+TGG + chr7_3:13554159-13554178 Msa1093550:intron 30.0%
!!! AAGTGAATGTGTTATTTTGC+AGG + chr7_3:13554214-13554233 Msa1093550:intron 30.0%
GTAAAATTAGAATGGAAACG+AGG - chr7_3:13554242-13554261 None:intergenic 30.0%
AAGTGTCAAAAGAAATGACT+CGG + chr7_3:13554444-13554463 Msa1093550:CDS 30.0%
!! ATTTAGTTTGGAAATCTGGA+AGG - chr7_3:13554559-13554578 None:intergenic 30.0%
CAATGAAGATCACATTCAAA+AGG + chr7_3:13554613-13554632 Msa1093550:CDS 30.0%
! TTCAACTTCTTATTTCCATG+TGG - chr7_3:13554668-13554687 None:intergenic 30.0%
ATTAATCAGGTAAATGCAAG+TGG + chr7_3:13555002-13555021 Msa1093550:intron 30.0%
TGGAAACTTGACAAATACAA+CGG + chr7_3:13555086-13555105 Msa1093550:CDS 30.0%
CAAAGGAAATAGAACTTACA+TGG - chr7_3:13555505-13555524 None:intergenic 30.0%
! TATTCAAGTGTTCTAGACAA+AGG - chr7_3:13555522-13555541 None:intergenic 30.0%
AAAACAGATATGCAATCAAG+TGG + chr7_3:13555699-13555718 Msa1093550:CDS 30.0%
! TTTGGTATTTTCTTGGTCTA+TGG - chr7_3:13555813-13555832 None:intergenic 30.0%
!!! ATGGATGACCAAATTTTTTG+TGG + chr7_3:13555835-13555854 Msa1093550:three_prime_UTR 30.0%
TACTTGAGTCAATCAGATTA+AGG + chr7_3:13555921-13555940 Msa1093550:three_prime_UTR 30.0%
TCAGTACTATCAAAACTTGT+CGG + chr7_3:13556006-13556025 Msa1093550:three_prime_UTR 30.0%
AGATCAAACCAAGAGATATT+TGG + chr7_3:13556029-13556048 Msa1093550:three_prime_UTR 30.0%
TAGTAACCCCTATATATAGG+AGG + chr7_3:13553495-13553514 Msa1093550:intron 35.0%
ACTTATACACTCCTAACTTG+GGG - chr7_3:13553544-13553563 None:intergenic 35.0%
GACTTATACACTCCTAACTT+GGG - chr7_3:13553545-13553564 None:intergenic 35.0%
AGACTTATACACTCCTAACT+TGG - chr7_3:13553546-13553565 None:intergenic 35.0%
! AGTTAGGAGTGTATAAGTCT+CGG + chr7_3:13553546-13553565 Msa1093550:intron 35.0%
CAAAAGAATTCCATCCTTTC+AGG - chr7_3:13553656-13553675 None:intergenic 35.0%
CTCATTTAAGTGGAAGAAGA+CGG + chr7_3:13553775-13553794 Msa1093550:intron 35.0%
TCATTTAAGTGGAAGAAGAC+GGG + chr7_3:13553776-13553795 Msa1093550:intron 35.0%
CCAATTAAAACCACGTTGAA+GGG - chr7_3:13553849-13553868 None:intergenic 35.0%
ACCAATTAAAACCACGTTGA+AGG - chr7_3:13553850-13553869 None:intergenic 35.0%
CTTGACTCTCTCTATGAATT+TGG + chr7_3:13554027-13554046 Msa1093550:intron 35.0%
TTAGACCCTTTCATCTCTTT+AGG + chr7_3:13554084-13554103 Msa1093550:intron 35.0%
! AATGCATTGTTTAGGTTTGG+TGG + chr7_3:13554162-13554181 Msa1093550:intron 35.0%
TTTGGTTGTAAGTTCTTCGA+GGG - chr7_3:13554274-13554293 None:intergenic 35.0%
ATTTGGTCTGTAGTTAGTAG+AGG - chr7_3:13554366-13554385 None:intergenic 35.0%
TCTACTAACTACAGACCAAA+TGG + chr7_3:13554365-13554384 Msa1093550:CDS 35.0%
AGTGTCAAAAGAAATGACTC+GGG + chr7_3:13554445-13554464 Msa1093550:CDS 35.0%
!!! GAATTGTTTTGATGAAACCG+AGG - chr7_3:13554473-13554492 None:intergenic 35.0%
TCATCAAAACAATTCCAACC+CGG + chr7_3:13554478-13554497 Msa1093550:CDS 35.0%
TCCTTAACAACTGATGATTC+CGG - chr7_3:13554500-13554519 None:intergenic 35.0%
!! TTGATTTAGCTTCTGCGTTT+TGG - chr7_3:13554700-13554719 None:intergenic 35.0%
AAAAATGGCAAGCGAAAACT+TGG - chr7_3:13554783-13554802 None:intergenic 35.0%
!!! ATGTCTTTTTTGAAGTCCAC+CGG - chr7_3:13555059-13555078 None:intergenic 35.0%
ATGTGTCGAAACAAACAGTT+GGG - chr7_3:13555149-13555168 None:intergenic 35.0%
TCCTTACAAACAATGAGAAC+AGG + chr7_3:13555171-13555190 Msa1093550:CDS 35.0%
ACCTGTTCTCATTGTTTGTA+AGG - chr7_3:13555175-13555194 None:intergenic 35.0%
! TTCATCTTTTATAGAGTCCG+AGG + chr7_3:13555257-13555276 Msa1093550:intron 35.0%
! TCATCTTTTATAGAGTCCGA+GGG + chr7_3:13555258-13555277 Msa1093550:intron 35.0%
TTGCAGATTGGACTAAAAGA+TGG + chr7_3:13555323-13555342 Msa1093550:intron 35.0%
! TTTTCTGCAGAACACTATGA+AGG + chr7_3:13555665-13555684 Msa1093550:intron 35.0%
! TTTGTCATCTAGTTCAGTCA+TGG - chr7_3:13556085-13556104 None:intergenic 35.0%
ACTAGTGAACGACTCATTGT+TGG - chr7_3:13553457-13553476 None:intergenic 40.0%
GTTCACTAGTCATTGTGTGT+TGG + chr7_3:13553467-13553486 Msa1093550:intron 40.0%
! ACTAGTCATTGTGTGTTGGT+TGG + chr7_3:13553471-13553490 Msa1093550:intron 40.0%
GGCTAGTAACCCCTATATAT+AGG + chr7_3:13553492-13553511 Msa1093550:intron 40.0%
TTTACCTTGTTCCCCAAGTT+AGG + chr7_3:13553530-13553549 Msa1093550:intron 40.0%
AGTGTATAAGTCTCGGATGA+TGG + chr7_3:13553553-13553572 Msa1093550:intron 40.0%
GTGTATAAGTCTCGGATGAT+GGG + chr7_3:13553554-13553573 Msa1093550:intron 40.0%
!! GGATGATGGGTTCTTAAGTT+CGG + chr7_3:13553567-13553586 Msa1093550:intron 40.0%
TCATAATCGCCTAAGCCTAA+TGG - chr7_3:13553593-13553612 None:intergenic 40.0%
ATTAGGCTTAGGCGATTATG+AGG + chr7_3:13553592-13553611 Msa1093550:intron 40.0%
GAGTCCAAATAAGACTGGAA+GGG - chr7_3:13553693-13553712 None:intergenic 40.0%
AGAGTCCAAATAAGACTGGA+AGG - chr7_3:13553694-13553713 None:intergenic 40.0%
!!! CCCTTCAACGTGGTTTTAAT+TGG + chr7_3:13553846-13553865 Msa1093550:intron 40.0%
TCATAGTCAGCAGAAGAACA+AGG + chr7_3:13553967-13553986 Msa1093550:CDS 40.0%
GAGTCAAGAAAGTTGCCAAT+AGG - chr7_3:13554015-13554034 None:intergenic 40.0%
CGGCTGCTGTAAAATTAGAA+TGG - chr7_3:13554250-13554269 None:intergenic 40.0%
GTTTGGTTGTAAGTTCTTCG+AGG - chr7_3:13554275-13554294 None:intergenic 40.0%
! ATGTCGAAGCATTTCGTGTT+TGG - chr7_3:13554292-13554311 None:intergenic 40.0%
TGTGAAAGACATGGCTTCTT+GGG - chr7_3:13554322-13554341 None:intergenic 40.0%
TTGTGAAAGACATGGCTTCT+TGG - chr7_3:13554323-13554342 None:intergenic 40.0%
GTGTCAAAAGAAATGACTCG+GGG + chr7_3:13554446-13554465 Msa1093550:CDS 40.0%
CCTTAACAACTGATGATTCC+GGG - chr7_3:13554499-13554518 None:intergenic 40.0%
GAAGCTAAATCAAGTGAGAC+AGG + chr7_3:13554707-13554726 Msa1093550:CDS 40.0%
AATGCAAGTGGCCAATTTGT+TGG + chr7_3:13555014-13555033 Msa1093550:CDS 40.0%
TCTCTGCTACTCCAACAAAT+TGG - chr7_3:13555028-13555047 None:intergenic 40.0%
ACGGATTCTTCCCAATTAAG+TGG + chr7_3:13555105-13555124 Msa1093550:CDS 40.0%
GATGTGTCGAAACAAACAGT+TGG - chr7_3:13555150-13555169 None:intergenic 40.0%
ACAGGTGTGTAACTTTCAGT+AGG + chr7_3:13555189-13555208 Msa1093550:CDS 40.0%
CAGGTGTGTAACTTTCAGTA+GGG + chr7_3:13555190-13555209 Msa1093550:CDS 40.0%
GATTGGACTAAAAGATGGTC+TGG + chr7_3:13555328-13555347 Msa1093550:intron 40.0%
TCAGGCAAAGACATCTCTAT+TGG + chr7_3:13555376-13555395 Msa1093550:CDS 40.0%
! AGAAGTTATTTCGTTCCCAG+AGG + chr7_3:13555426-13555445 Msa1093550:CDS 40.0%
GAGAAGCTGATAAGTAGCTA+CGG - chr7_3:13555559-13555578 None:intergenic 40.0%
TTTGATCAGCGTCTCATGAT+TGG - chr7_3:13555730-13555749 None:intergenic 40.0%
AGACGCTGATCAAACTAACA+AGG + chr7_3:13555736-13555755 Msa1093550:CDS 40.0%
CTAGTTCAGTCATGGTTGAA+TGG - chr7_3:13556077-13556096 None:intergenic 40.0%
! TGAACGACTCATTGTTGGCT+AGG - chr7_3:13553452-13553471 None:intergenic 45.0%
GGTTCTTAAGTTCGGCCATT+AGG + chr7_3:13553575-13553594 Msa1093550:intron 45.0%
TAAGTTCGGCCATTAGGCTT+AGG + chr7_3:13553581-13553600 Msa1093550:intron 45.0%
AGGCGATTATGAGGAGGATA+CGG + chr7_3:13553601-13553620 Msa1093550:intron 45.0%
TCCTTTCAGGCTTCATGCTT+GGG - chr7_3:13553643-13553662 None:intergenic 45.0%
ATCCTTTCAGGCTTCATGCT+TGG - chr7_3:13553644-13553663 None:intergenic 45.0%
AAGCATGAAGCCTGAAAGGA+TGG + chr7_3:13553643-13553662 Msa1093550:intron 45.0%
!! CATGCCCTTCCAGTCTTATT+TGG + chr7_3:13553686-13553705 Msa1093550:intron 45.0%
AATCAGTAGACCCTTCAACG+TGG + chr7_3:13553836-13553855 Msa1093550:intron 45.0%
AACAAGGCAGATGTGGTATG+TGG + chr7_3:13553983-13554002 Msa1093550:intron 45.0%
GTTGTAAGTTCTTCGAGGGT+CGG - chr7_3:13554270-13554289 None:intergenic 45.0%
AAAGACATGGCTTCTTGGGT+TGG - chr7_3:13554318-13554337 None:intergenic 45.0%
!! CTGTAGTTAGTAGAGGCACT+TGG - chr7_3:13554359-13554378 None:intergenic 45.0%
AACAACTGATGATTCCGGGT+TGG - chr7_3:13554495-13554514 None:intergenic 45.0%
CCCGGAATCATCAGTTGTTA+AGG + chr7_3:13554496-13554515 Msa1093550:CDS 45.0%
CCGAGAAGAAGAGGAAGATT+GGG - chr7_3:13554742-13554761 None:intergenic 45.0%
CCCAATCTTCCTCTTCTTCT+CGG + chr7_3:13554739-13554758 Msa1093550:CDS 45.0%
ACCGAGAAGAAGAGGAAGAT+TGG - chr7_3:13554743-13554762 None:intergenic 45.0%
TTGAACTCACCGAGAAGAAG+AGG - chr7_3:13554751-13554770 None:intergenic 45.0%
TTGGAGTAGCAGAGATGCTA+GGG + chr7_3:13555033-13555052 Msa1093550:CDS 45.0%
TTTCAGTAGGGACACACAAG+AGG + chr7_3:13555202-13555221 Msa1093550:CDS 45.0%
TACGCGACAACTATATCCCT+CGG - chr7_3:13555277-13555296 None:intergenic 45.0%
! CGACACTCTTGTTTGCAGAT+TGG + chr7_3:13555311-13555330 Msa1093550:intron 45.0%
CTAAAGCCATGTCTTCCAGA+GGG - chr7_3:13555777-13555796 None:intergenic 45.0%
! TCTAAAGCCATGTCTTCCAG+AGG - chr7_3:13555778-13555797 None:intergenic 45.0%
! AACGCTGACTGTGTAGCAGA+GGG - chr7_3:13553226-13553245 None:intergenic 50.0%
! TAACGCTGACTGTGTAGCAG+AGG - chr7_3:13553227-13553246 None:intergenic 50.0%
CACTCCTAACTTGGGGAACA+AGG - chr7_3:13553537-13553556 None:intergenic 50.0%
AGGCTTAGGCGATTATGAGG+AGG + chr7_3:13553595-13553614 Msa1093550:intron 50.0%
GGCGATTATGAGGAGGATAC+GGG + chr7_3:13553602-13553621 Msa1093550:intron 50.0%
CTTTCAGGCTTCATGCTTGG+GGG - chr7_3:13553641-13553660 None:intergenic 50.0%
CCTTTCAGGCTTCATGCTTG+GGG - chr7_3:13553642-13553661 None:intergenic 50.0%
GCAGAAGAACAAGGCAGATG+TGG + chr7_3:13553976-13553995 Msa1093550:CDS 50.0%
GGTATGTGGTGACTGCCTAT+TGG + chr7_3:13553997-13554016 Msa1093550:intron 50.0%
! AAGAAATGACTCGGGGTCCT+CGG + chr7_3:13554453-13554472 Msa1093550:CDS 50.0%
GTTTGGACAAGCACTCCACA+TGG + chr7_3:13554650-13554669 Msa1093550:CDS 50.0%
GTTGGAGTAGCAGAGATGCT+AGG + chr7_3:13555032-13555051 Msa1093550:CDS 50.0%
ATGCTGCTCGGTAATCCTCT+GGG - chr7_3:13555444-13555463 None:intergenic 50.0%
TATGCTGCTCGGTAATCCTC+TGG - chr7_3:13555445-13555464 None:intergenic 50.0%
AGGATTACCGAGCAGCATAC+AGG + chr7_3:13555446-13555465 Msa1093550:CDS 50.0%
GATCAGCGTCTCATGATTGG+TGG - chr7_3:13555727-13555746 None:intergenic 50.0%
AATCTCTCTCTCACTCCCTC+TGG + chr7_3:13555759-13555778 Msa1093550:CDS 50.0%
TGCTTGGGGGTCTATGGAGT+CGG - chr7_3:13553628-13553647 None:intergenic 55.0%
GCTTCATGCTTGGGGGTCTA+TGG - chr7_3:13553634-13553653 None:intergenic 55.0%
CCCCAAGCATGAAGCCTGAA+AGG + chr7_3:13553639-13553658 Msa1093550:intron 55.0%
AGTAGCAGAGATGCTAGGGC+CGG + chr7_3:13555037-13555056 Msa1093550:CDS 55.0%
TGTCGTGCCTGTATGCTGCT+CGG - chr7_3:13555456-13555475 None:intergenic 55.0%
! CTCACTCCCTCTGGAAGACA+TGG + chr7_3:13555768-13555787 Msa1093550:CDS 55.0%
AGCAGAGATGCTAGGGCCGG+TGG + chr7_3:13555040-13555059 Msa1093550:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 13553070 13556125 13553070 ID=Msa1093550;Name=Msa1093550
chr7_3 mRNA 13553070 13556125 13553070 ID=Msa1093550-mRNA-1;Parent=Msa1093550;Name=Msa1093550-mRNA-1;_AED=0.22;_eAED=0.22;_QI=127|1|1|1|0.8|0.83|6|325|390
chr7_3 exon 13553070 13553269 13553070 ID=Msa1093550-mRNA-1:exon:3226;Parent=Msa1093550-mRNA-1
chr7_3 exon 13553939 13553997 13553939 ID=Msa1093550-mRNA-1:exon:3227;Parent=Msa1093550-mRNA-1
chr7_3 exon 13554236 13554760 13554236 ID=Msa1093550-mRNA-1:exon:3228;Parent=Msa1093550-mRNA-1
chr7_3 exon 13555011 13555223 13555011 ID=Msa1093550-mRNA-1:exon:3229;Parent=Msa1093550-mRNA-1
chr7_3 exon 13555329 13555505 13555329 ID=Msa1093550-mRNA-1:exon:3230;Parent=Msa1093550-mRNA-1
chr7_3 exon 13555675 13556125 13555675 ID=Msa1093550-mRNA-1:exon:3231;Parent=Msa1093550-mRNA-1
chr7_3 five_prime_UTR 13553070 13553196 13553070 ID=Msa1093550-mRNA-1:five_prime_utr;Parent=Msa1093550-mRNA-1
chr7_3 CDS 13553197 13553269 13553197 ID=Msa1093550-mRNA-1:cds;Parent=Msa1093550-mRNA-1
chr7_3 CDS 13553939 13553997 13553939 ID=Msa1093550-mRNA-1:cds;Parent=Msa1093550-mRNA-1
chr7_3 CDS 13554236 13554760 13554236 ID=Msa1093550-mRNA-1:cds;Parent=Msa1093550-mRNA-1
chr7_3 CDS 13555011 13555223 13555011 ID=Msa1093550-mRNA-1:cds;Parent=Msa1093550-mRNA-1
chr7_3 CDS 13555329 13555505 13555329 ID=Msa1093550-mRNA-1:cds;Parent=Msa1093550-mRNA-1
chr7_3 CDS 13555675 13555800 13555675 ID=Msa1093550-mRNA-1:cds;Parent=Msa1093550-mRNA-1
chr7_3 three_prime_UTR 13555801 13556125 13555801 ID=Msa1093550-mRNA-1:three_prime_utr;Parent=Msa1093550-mRNA-1
Gene Sequence

>Msa1093550

ATGTTATTTTCATCATATAAGATTCTCCCTCTGCTACACAGTCAGCGTTACTTTATCAACACTTGTTTTAAATCTCAATCTATTCAAACAGCAACTACAAATCATAGTCAGCAGAAGAACAAGGCAGATGTGGCTCCTCGTTTCCATTCTAATTTTACAGCAGCCGACCCTCGAAGAACTTACAACCAAACACGAAATGCTTCGACATTTGCCAACCCAAGAAGCCATGTCTTTCACAATACTAATTACAGGCCAAGTGCCTCTACTAACTACAGACCAAATGGTATAGTATCTAATGATAAAGTTTTGTTAAGTGAAAAATTCAGAAGTGAAGAATCTGAAGTGTCAAAAGAAATGACTCGGGGTCCTCGGTTTCATCAAAACAATTCCAACCCGGAATCATCAGTTGTTAAGGATGAATTTGCGTTCACAGTGTGCAGAGATCGATATAACCTTCCAGATTTCCAAACTAAATATGAAACTGCTAAATTTTATATGATTAAATCTTTCAATGAAGATCACATTCAAAAGGGAATAAAATATGATGTTTGGACAAGCACTCCACATGGAAATAAGAAGTTGAACGCTGCATTCCAAAACGCAGAAGCTAAATCAAGTGAGACAGGCACACAGTGCCCAATCTTCCTCTTCTTCTCGGTAAATGCAAGTGGCCAATTTGTTGGAGTAGCAGAGATGCTAGGGCCGGTGGACTTCAAAAAAGACATGAAATTTTGGAAACTTGACAAATACAACGGATTCTTCCCAATTAAGTGGCATATAATAAAAGATGTTCCCAACTGTTTGTTTCGACACATCATCCTTACAAACAATGAGAACAGGTGTGTAACTTTCAGTAGGGACACACAAGAGATTGGACTAAAAGATGGTCTGGAAATGCTAAAAATATTCAAAAGTTATCAGGCAAAGACATCTCTATTGGATGATTTTGATTTCTATGAGAATCGAGAGAAGTTATTTCGTTCCCAGAGGATTACCGAGCAGCATACAGGCACGACACATGAAGTGAACAATAATGATAGTTACCATAACACTATGAAGGCAAAAGAGAAGAAAACAGATATGCAATCAAGTGGTACCACCAATCATGAGACGCTGATCAAACTAACAAGGAATCTCTCTCTCACTCCCTCTGGAAGACATGGCTTTAGATAA

Protein sequence

>Msa1093550

MLFSSYKILPLLHSQRYFINTCFKSQSIQTATTNHSQQKNKADVAPRFHSNFTAADPRRTYNQTRNASTFANPRSHVFHNTNYRPSASTNYRPNGIVSNDKVLLSEKFRSEESEVSKEMTRGPRFHQNNSNPESSVVKDEFAFTVCRDRYNLPDFQTKYETAKFYMIKSFNEDHIQKGIKYDVWTSTPHGNKKLNAAFQNAEAKSSETGTQCPIFLFFSVNASGQFVGVAEMLGPVDFKKDMKFWKLDKYNGFFPIKWHIIKDVPNCLFRHIILTNNENRCVTFSRDTQEIGLKDGLEMLKIFKSYQAKTSLLDDFDFYENREKLFRSQRITEQHTGTTHEVNNNDSYHNTMKAKEKKTDMQSSGTTNHETLIKLTRNLSLTPSGRHGFR*