AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1021460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1021460 MtrunA17_Chr7g0237621 99.317 293 2 0 1 293 18 310 0.0 599
Msa1021460 MtrunA17_Chr7g0237581 76.325 283 67 0 11 293 16 298 1.18e-162 459
Msa1021460 MtrunA17_Chr8g0371521 53.731 268 111 3 15 274 32 294 7.94e-93 288
Msa1021460 MtrunA17_Chr2g0292681 54.286 245 109 1 15 256 47 291 3.74e-84 269
Msa1021460 MtrunA17_Chr7g0237611 85.106 94 13 1 312 404 22 115 2.40e-48 160
Msa1021460 MtrunA17_Chr2g0292671 45.342 161 85 1 88 245 2 162 1.30e-41 145
Msa1021460 MtrunA17_Chr2g0292661 71.667 60 17 0 15 74 44 103 1.11e-23 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1021460 AT5G48850.1 65.172 290 94 3 9 293 17 304 1.20e-130 379
Msa1021460 AT1G04770.1 58.596 285 105 5 19 293 20 301 1.01e-111 330
Msa1021460 AT3G51280.1 55.385 260 111 2 19 274 30 288 8.45e-92 284
Msa1021460 AT4G20900.2 53.469 245 106 2 10 248 42 284 1.65e-82 260
Msa1021460 AT4G20900.1 50.192 261 106 3 10 248 42 300 2.35e-78 249
Msa1021460 AT5G44330.1 52.489 221 102 1 24 241 49 269 4.20e-66 218
Msa1021460 AT5G22794.2 65.672 67 23 0 96 162 71 137 1.77e-22 95.9
Msa1021460 AT5G22794.1 56.716 67 22 1 96 162 71 130 5.20e-16 76.6

Find 87 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAAGTTTATGGATGATTT+AGG 0.095537 7_1:-45855644 Msa1021460:CDS
CTTGCCACAACCTAAGTTTA+TGG 0.146740 7_1:-45855654 Msa1021460:CDS
CAATTCTTCAGCTCTATTTC+TGG 0.147773 7_1:+45855697 None:intergenic
AGCTGAGATGCGTATGTTTA+TGG 0.178762 7_1:-45854883 Msa1021460:CDS
CTTTGTCGTCCTTCCATTAA+AGG 0.194578 7_1:+45857296 None:intergenic
TGTTTCTGCTGGTGAGATTT+TGG 0.216667 7_1:-45855039 Msa1021460:CDS
TGGGAGAGATTCAGTGAAAA+TGG 0.247645 7_1:+45858805 None:intergenic
CTAAGTTTATGGATGATTTA+GGG 0.273109 7_1:-45855643 Msa1021460:CDS
GTTATTCATAAGGTTCCTTA+TGG 0.304411 7_1:-45858642 Msa1021460:CDS
TACCAAGGTGAGGCCTTTAA+TGG 0.310819 7_1:-45857309 Msa1021460:CDS
AACTTGCTCAAGAATTAAAT+AGG 0.338540 7_1:+45855757 None:intergenic
TTGATGGATTACTTAATGTT+TGG 0.342938 7_1:-45855595 Msa1021460:CDS
TAGTTGGTGTAGAAGGTATT+TGG 0.348772 7_1:+45854771 None:intergenic
AAGTTGCTATAGTGTACTTT+TGG 0.357890 7_1:-45857899 Msa1021460:CDS
AGTACCTACCTGAGCATGTT+TGG 0.365922 7_1:+45858599 None:intergenic
GTCTGGATAGTTGGTGTAGA+AGG 0.369601 7_1:+45854764 None:intergenic
AAGTACACTATAGCAACTTC+TGG 0.375170 7_1:+45857903 None:intergenic
GGGAGAGATTCAGTGAAAAT+GGG 0.383949 7_1:+45858806 None:intergenic
GGATAGTGCTCTAAAGGATA+TGG 0.385948 7_1:-45857850 Msa1021460:CDS
ATGGATGAGGGTGTTGTTGC+AGG 0.401577 7_1:-45854996 Msa1021460:CDS
GCATGTTTGGCTTTGACATA+AGG 0.405107 7_1:+45858612 None:intergenic
TCTCTATCATGTTATTCATA+AGG 0.406833 7_1:-45858652 Msa1021460:CDS
AGAAGATATTTCCTCAAAGA+TGG 0.410475 7_1:+45855547 None:intergenic
ATTGATTGTTTAGGGAAACT+TGG 0.412436 7_1:-45855915 Msa1021460:intron
CATAACGAGATTGTCTCATT+AGG 0.414447 7_1:+45855786 None:intergenic
TGTTTAGGGAAACTTGGGTT+GGG 0.416088 7_1:-45855909 Msa1021460:intron
ATCCATCAATTCCTTTCAAA+AGG 0.416312 7_1:+45855609 None:intergenic
AATTCAAAGTACATAACATT+GGG 0.418986 7_1:+45854718 None:intergenic
AAGAAGACTTCCCATCTTTG+AGG 0.419105 7_1:-45855558 Msa1021460:CDS
GATCATGTTTGTGTTTCTGC+TGG 0.423708 7_1:-45855050 Msa1021460:CDS
GGAAGTCTTCTTGATCTAGT+TGG 0.437256 7_1:+45855569 None:intergenic
CCGGATTCTGCTCCTCCGAT+TGG 0.439493 7_1:-45854930 Msa1021460:CDS
GGCTAAATTCAAAGCCTTGT+TGG 0.440956 7_1:+45855814 None:intergenic
CAAAGTGGATAGTGCTCTAA+AGG 0.448477 7_1:-45857856 Msa1021460:CDS
GGAGAGCATGTTTGATGCTC+AGG 0.453568 7_1:-45854862 Msa1021460:CDS
GGTTTAAGTTAGAGTTGAAA+GGG 0.457070 7_1:+45854739 None:intergenic
GCAAGAAACAGCAAGACTAT+TGG 0.460999 7_1:-45857232 Msa1021460:intron
TCTCTCCCATCTTCATCATA+AGG 0.470766 7_1:-45858791 Msa1021460:five_prime_UTR
TTAGAGTTGAAAGGGTGGTC+TGG 0.474314 7_1:+45854747 None:intergenic
TGAAAGTGAAGATGATGATC+CGG 0.478553 7_1:-45854949 Msa1021460:CDS
TTTCTTGCTTGATAGAAACT+TGG 0.480530 7_1:+45857247 None:intergenic
CCTAAATCATCCATAAACTT+AGG 0.481001 7_1:+45855644 None:intergenic
GTGACATATACAGAGAGAAA+TGG 0.484017 7_1:-45858721 Msa1021460:exon
AGATTGTCTCATTAGGCATA+AGG 0.484330 7_1:+45855793 None:intergenic
GAAAGGGTGGTCTGGATAGT+TGG 0.488319 7_1:+45854755 None:intergenic
CCAATCGGAGGAGCAGAATC+CGG 0.489121 7_1:+45854930 None:intergenic
GGGTTTAAGTTAGAGTTGAA+AGG 0.495838 7_1:+45854738 None:intergenic
TGTCAAAGCCAAACATGCTC+AGG 0.496739 7_1:-45858607 Msa1021460:intron
CATGCACCTTATGATGAAGA+TGG 0.506907 7_1:+45858785 None:intergenic
AAATTCAAAGTACATAACAT+TGG 0.511981 7_1:+45854717 None:intergenic
ACAAAGACTGCTCGCTCTCA+TGG 0.512305 7_1:-45857279 Msa1021460:CDS
AATGAGACAATCTCGTTATG+AGG 0.514397 7_1:-45855783 Msa1021460:CDS
TTGTTTAGGGAAACTTGGGT+TGG 0.515491 7_1:-45855910 Msa1021460:intron
AAACATACGCATCTCAGCTA+TGG 0.517065 7_1:+45854887 None:intergenic
TGATGAGGTGCAGGCTGCAA+TGG 0.517896 7_1:-45855015 Msa1021460:CDS
TCAGAAATGTGGAAGAATAG+AGG 0.535352 7_1:-45857370 Msa1021460:intron
GAAGATATTTCCTCAAAGAT+GGG 0.535613 7_1:+45855548 None:intergenic
TGTACTTCTTGATCTTTACA+AGG 0.536497 7_1:-45857727 Msa1021460:intron
GACTTGATTTCATCAGAACC+TGG 0.545316 7_1:+45855719 None:intergenic
TTGATTGTTTAGGGAAACTT+GGG 0.545737 7_1:-45855914 Msa1021460:intron
AAACTTAGGTTGTGGCAAGT+TGG 0.547589 7_1:+45855658 None:intergenic
GGAGAGATTCAGTGAAAATG+GGG 0.548864 7_1:+45858807 None:intergenic
ACATAAGGAGTATCACCATA+AGG 0.554287 7_1:+45858627 None:intergenic
AGTACGACTTGCAAGCCAAT+CGG 0.558590 7_1:+45854915 None:intergenic
TCATCCATAAACTTAGGTTG+TGG 0.560954 7_1:+45855650 None:intergenic
GTATTGAAGAAAAGTTCTAA+AGG 0.565096 7_1:-45858687 Msa1021460:CDS
GCAGGTGATGATGAAGTGAT+TGG 0.580959 7_1:-45854978 Msa1021460:CDS
TTAAGTTAGAGTTGAAAGGG+TGG 0.582483 7_1:+45854742 None:intergenic
ATGCACCTTATGATGAAGAT+GGG 0.587704 7_1:+45858786 None:intergenic
GGTGCAGGCTGCAATGGATG+AGG 0.592082 7_1:-45855009 Msa1021460:CDS
AAACTACATGATGGCTGAGG+TGG 0.597629 7_1:-45855870 Msa1021460:CDS
TGATTGAATCATTAATTCAG+AGG 0.599349 7_1:-45854824 Msa1021460:CDS
GCAAAAGACAAACTACATGA+TGG 0.600357 7_1:-45855879 Msa1021460:CDS
TTCCATTAAAGGCCTCACCT+TGG 0.605669 7_1:+45857307 None:intergenic
GATAGATGCTGATGCCAACA+AGG 0.611933 7_1:-45855828 Msa1021460:CDS
AAGGTGAGGCCTTTAATGGA+AGG 0.621345 7_1:-45857305 Msa1021460:CDS
TGTTTGATGCTCAGGATGCG+AGG 0.628433 7_1:-45854854 Msa1021460:CDS
AATCAATGCTGGAGACAAAG+TGG 0.650220 7_1:-45857871 Msa1021460:CDS
CATATACAGAGAGAAATGGA+AGG 0.651435 7_1:-45858717 Msa1021460:exon
GACAAACTACATGATGGCTG+AGG 0.652612 7_1:-45855873 Msa1021460:CDS
GTGCAGGCTGCAATGGATGA+GGG 0.654889 7_1:-45855008 Msa1021460:CDS
AAGCTAAGACTTATCTACCA+AGG 0.663143 7_1:-45857324 Msa1021460:CDS
GTAGAAGGTATTTGGTGACA+TGG 0.666812 7_1:+45854779 None:intergenic
AAGACTTATCTACCAAGGTG+AGG 0.669025 7_1:-45857319 Msa1021460:CDS
ACGACTTGCAAGCCAATCGG+AGG 0.669091 7_1:+45854918 None:intergenic
AGAGATTCAGTGAAAATGGG+GGG 0.681806 7_1:+45858809 None:intergenic
GAGAGATTCAGTGAAAATGG+GGG 0.712050 7_1:+45858808 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATTTTATTTTAAAATT+TGG + chr7_1:45857164-45857183 None:intergenic 0.0%
!!! AATTTTAAAATAAAATAATA+TGG - chr7_1:45857164-45857183 Msa1021460:intron 0.0%
!! GAATAACTTAAAAATAAAAA+AGG + chr7_1:45855395-45855414 None:intergenic 10.0%
!! CTATATAATTAGTAAATTAT+CGG - chr7_1:45855877-45855896 Msa1021460:CDS 10.0%
!!! TTTAAATTTTTTAGTTTCAT+GGG + chr7_1:45856422-45856441 None:intergenic 10.0%
!!! TTTTAAATTTTTTAGTTTCA+TGG + chr7_1:45856423-45856442 None:intergenic 10.0%
!! AAATTTACTTATATATGAAT+TGG - chr7_1:45856871-45856890 Msa1021460:intron 10.0%
!! AAAATCAAATACTATATAAA+AGG + chr7_1:45856898-45856917 None:intergenic 10.0%
!!! GTTTATCAATATTTTTTTAA+AGG + chr7_1:45857012-45857031 None:intergenic 10.0%
!!! TTTGTAAAAATGATTATTTT+TGG - chr7_1:45857338-45857357 Msa1021460:CDS 10.0%
!!! TTGTAAAAATGATTATTTTT+GGG - chr7_1:45857339-45857358 Msa1021460:CDS 10.0%
!! ATTTAGAGATCAAATTAAAA+GGG + chr7_1:45855023-45855042 None:intergenic 15.0%
!! AATTTAGAGATCAAATTAAA+AGG + chr7_1:45855024-45855043 None:intergenic 15.0%
!!! AATATTTTTGGTACAAAATT+TGG + chr7_1:45855257-45855276 None:intergenic 15.0%
!!! TTCAAAAAGACAAATATTTT+TGG + chr7_1:45855269-45855288 None:intergenic 15.0%
!! ATTTACACAAAAACTAAATT+AGG + chr7_1:45856118-45856137 None:intergenic 15.0%
!! TTATATTGTTCAAATATTAC+CGG + chr7_1:45856683-45856702 None:intergenic 15.0%
!!! ATATATAAGTAAATTTTGCA+AGG + chr7_1:45856867-45856886 None:intergenic 15.0%
!! TAAATAAATATTACAACATG+TGG - chr7_1:45856947-45856966 Msa1021460:intron 15.0%
!!! AAATTTGTTCTTATAGAAAT+TGG + chr7_1:45856978-45856997 None:intergenic 15.0%
!!! GAAATACAAAAAATTGTTTT+AGG + chr7_1:45857190-45857209 None:intergenic 15.0%
!!! CAAATAAATATTTTTACAAG+AGG - chr7_1:45857222-45857241 Msa1021460:intron 15.0%
!! TGACTTTAAATTGATGTATA+TGG - chr7_1:45855098-45855117 Msa1021460:intron 20.0%
!!! TAATTTACTATTACCTTTTC+AGG - chr7_1:45855140-45855159 Msa1021460:intron 20.0%
!!! GAATCATTTTGCTTATATTT+TGG - chr7_1:45855286-45855305 Msa1021460:intron 20.0%
!!! ATTTTGCTTATATTTTGGTA+CGG - chr7_1:45855291-45855310 Msa1021460:intron 20.0%
!!! TTCTACTTTTTTACATTCTT+TGG - chr7_1:45855429-45855448 Msa1021460:intron 20.0%
!! AATATAATGAAACACATGTT+TGG + chr7_1:45855811-45855830 None:intergenic 20.0%
!! GATGTTCAATTATCATATTA+TGG - chr7_1:45855840-45855859 Msa1021460:CDS 20.0%
!! TATATTGTTCAAATATTACC+GGG + chr7_1:45856682-45856701 None:intergenic 20.0%
!! AAAGTAAAAATATTCGTACA+TGG + chr7_1:45856792-45856811 None:intergenic 20.0%
!! CAAAATGTAGTATATTTACA+AGG + chr7_1:45856819-45856838 None:intergenic 20.0%
!!! AATTTTTTTCTTCAACACAA+TGG - chr7_1:45857290-45857309 Msa1021460:CDS 20.0%
!!! AGATTTTCTCTTTTATATCT+AGG - chr7_1:45857550-45857569 Msa1021460:intron 20.0%
!! TATGTTGTATATATTGTCTT+AGG - chr7_1:45858024-45858043 Msa1021460:intron 20.0%
!!! ATTGATGATGAATAATAATG+TGG - chr7_1:45858162-45858181 Msa1021460:intron 20.0%
!!! TTGATGATGAATAATAATGT+GGG - chr7_1:45858163-45858182 Msa1021460:intron 20.0%
!! ATAAGGATGTTAATAAGAAT+TGG - chr7_1:45858398-45858417 Msa1021460:intron 20.0%
!! AATTCAAAGTACATAACATT+GGG + chr7_1:45858792-45858811 None:intergenic 20.0%
!! AAATTCAAAGTACATAACAT+TGG + chr7_1:45858793-45858812 None:intergenic 20.0%
!! GTATTGAAGAAAAGTTCTAA+AGG - chr7_1:45854820-45854839 Msa1021460:CDS 25.0%
! TCTCTATCATGTTATTCATA+AGG - chr7_1:45854855-45854874 Msa1021460:CDS 25.0%
! CAAATTAAAAGGGATAAAGA+TGG + chr7_1:45855013-45855032 None:intergenic 25.0%
! TATGTTATATTGATCAGTTC+TGG - chr7_1:45855045-45855064 Msa1021460:CDS 25.0%
! TAAGAAAGACAGTGTATAAT+AGG + chr7_1:45855327-45855346 None:intergenic 25.0%
! ACACCTTTCATATAAAATGT+TGG - chr7_1:45856066-45856085 Msa1021460:intron 25.0%
!! CAACCAACATTTTATATGAA+AGG + chr7_1:45856072-45856091 None:intergenic 25.0%
!! TTTTGTGTAAATCAGAAATG+TGG - chr7_1:45856126-45856145 Msa1021460:intron 25.0%
! ATTAAACCAAGAGAAATACT+TGG - chr7_1:45856359-45856378 Msa1021460:intron 25.0%
! AACACTAAACATTACATGTT+AGG - chr7_1:45856390-45856409 Msa1021460:intron 25.0%
! CTTGTATGATCTATATTGTA+GGG + chr7_1:45856715-45856734 None:intergenic 25.0%
! CTACAATATAGATCATACAA+GGG - chr7_1:45856714-45856733 Msa1021460:intron 25.0%
! ATAAAAGAGAAAATCTTGTG+TGG + chr7_1:45857546-45857565 None:intergenic 25.0%
!! AACACATTGATTGATTGTTT+AGG - chr7_1:45857583-45857602 Msa1021460:intron 25.0%
!! ACACATTGATTGATTGTTTA+GGG - chr7_1:45857584-45857603 Msa1021460:intron 25.0%
!! AACTTGCTCAAGAATTAAAT+AGG + chr7_1:45857753-45857772 None:intergenic 25.0%
! CTAAGTTTATGGATGATTTA+GGG - chr7_1:45857864-45857883 Msa1021460:CDS 25.0%
!!! TTGATGGATTACTTAATGTT+TGG - chr7_1:45857912-45857931 Msa1021460:CDS 25.0%
!!! ATCTTCTTTTAGAGATCAAT+TGG - chr7_1:45857976-45857995 Msa1021460:intron 25.0%
!! TATTTTTCCTCACCATTTTA+AGG + chr7_1:45858114-45858133 None:intergenic 25.0%
! GAATAATGTTTGCTTGTATT+TGG - chr7_1:45858136-45858155 Msa1021460:intron 25.0%
! CTCAAATAAAACGACAATAA+GGG + chr7_1:45858276-45858295 None:intergenic 25.0%
! TCTCAAATAAAACGACAATA+AGG + chr7_1:45858277-45858296 None:intergenic 25.0%
! TGATTGAATCATTAATTCAG+AGG - chr7_1:45858683-45858702 Msa1021460:CDS 25.0%
AAAAAGAGGAGAAACAGAAA+GGG - chr7_1:45854752-45854771 Msa1021460:CDS 30.0%
GTTATTCATAAGGTTCCTTA+TGG - chr7_1:45854865-45854884 Msa1021460:CDS 30.0%
!! TTAATTTGTCACTCCTGAAA+AGG + chr7_1:45855156-45855175 None:intergenic 30.0%
TGCCTGTATTCTGTTATAAA+GGG + chr7_1:45855200-45855219 None:intergenic 30.0%
ATTCCTTGAATCTGAATTCA+AGG - chr7_1:45855349-45855368 Msa1021460:intron 30.0%
AATCCTTGAATTCAGATTCA+AGG + chr7_1:45855355-45855374 None:intergenic 30.0%
TCAATGTGTATGAAATCAGT+TGG - chr7_1:45855570-45855589 Msa1021460:CDS 30.0%
! AAGTTGCTATAGTGTACTTT+TGG - chr7_1:45855608-45855627 Msa1021460:CDS 30.0%
! GAAGCTATCAAATCTTTTAG+AGG - chr7_1:45855721-45855740 Msa1021460:CDS 30.0%
TGTACTTCTTGATCTTTACA+AGG - chr7_1:45855780-45855799 Msa1021460:CDS 30.0%
ACAGAACATGATATTGACAT+TGG - chr7_1:45855961-45855980 Msa1021460:intron 30.0%
TTTCTTGCTTGATAGAAACT+TGG + chr7_1:45856263-45856282 None:intergenic 30.0%
CCTTGTATGATCTATATTGT+AGG + chr7_1:45856716-45856735 None:intergenic 30.0%
CCTACAATATAGATCATACA+AGG - chr7_1:45856713-45856732 Msa1021460:intron 30.0%
!!! GCTTTGCTTTTGATTTTCAT+TGG + chr7_1:45857034-45857053 None:intergenic 30.0%
ATGAAAATCAAAAGCAAAGC+AGG - chr7_1:45857034-45857053 Msa1021460:intron 30.0%
ATTGATTGTTTAGGGAAACT+TGG - chr7_1:45857592-45857611 Msa1021460:intron 30.0%
TTGATTGTTTAGGGAAACTT+GGG - chr7_1:45857593-45857612 Msa1021460:intron 30.0%
CCTAAATCATCCATAAACTT+AGG + chr7_1:45857866-45857885 None:intergenic 30.0%
CCTAAGTTTATGGATGATTT+AGG - chr7_1:45857863-45857882 Msa1021460:CDS 30.0%
ATCCATCAATTCCTTTCAAA+AGG + chr7_1:45857901-45857920 None:intergenic 30.0%
GAAGATATTTCCTCAAAGAT+GGG + chr7_1:45857962-45857981 None:intergenic 30.0%
AGAAGATATTTCCTCAAAGA+TGG + chr7_1:45857963-45857982 None:intergenic 30.0%
GTATATATTGTCTTAGGTCT+AGG - chr7_1:45858030-45858049 Msa1021460:intron 30.0%
TATGAAATTGGAGAAGAGAA+TGG + chr7_1:45858070-45858089 None:intergenic 30.0%
!! CACCATTTTAAGGAGAAAAA+GGG + chr7_1:45858104-45858123 None:intergenic 30.0%
!! TCACCATTTTAAGGAGAAAA+AGG + chr7_1:45858105-45858124 None:intergenic 30.0%
! TTTTTCTCCTTAAAATGGTG+AGG - chr7_1:45858104-45858123 Msa1021460:intron 30.0%
TGTGACAATGTTTATTCCTT+GGG + chr7_1:45858311-45858330 None:intergenic 30.0%
TTGTGACAATGTTTATTCCT+TGG + chr7_1:45858312-45858331 None:intergenic 30.0%
GCTCAAAATGCACTATTATA+AGG - chr7_1:45858381-45858400 Msa1021460:intron 30.0%
! GGTTTAAGTTAGAGTTGAAA+GGG + chr7_1:45858771-45858790 None:intergenic 30.0%
ATGCACCTTATGATGAAGAT+GGG + chr7_1:45854724-45854743 None:intergenic 35.0%
!! TCTGTTTCTCCTCTTTTTCA+GGG + chr7_1:45854750-45854769 None:intergenic 35.0%
!! TTCTGTTTCTCCTCTTTTTC+AGG + chr7_1:45854751-45854770 None:intergenic 35.0%
GAAAAAGAGGAGAAACAGAA+AGG - chr7_1:45854751-45854770 Msa1021460:CDS 35.0%
GTGACATATACAGAGAGAAA+TGG - chr7_1:45854786-45854805 Msa1021460:CDS 35.0%
CATATACAGAGAGAAATGGA+AGG - chr7_1:45854790-45854809 Msa1021460:CDS 35.0%
!! ACATAAGGAGTATCACCATA+AGG + chr7_1:45854883-45854902 None:intergenic 35.0%
CTCCCTTTATAACAGAATAC+AGG - chr7_1:45855195-45855214 Msa1021460:intron 35.0%
CTGCCTGTATTCTGTTATAA+AGG + chr7_1:45855201-45855220 None:intergenic 35.0%
AACAGAATACAGGCAGTAAA+AGG - chr7_1:45855205-45855224 Msa1021460:intron 35.0%
ATGTGTATGAAATCAGTTGG+TGG - chr7_1:45855573-45855592 Msa1021460:CDS 35.0%
AAGTACACTATAGCAACTTC+TGG + chr7_1:45855607-45855626 None:intergenic 35.0%
! TGCTATAGTGTACTTTTGGA+AGG - chr7_1:45855612-45855631 Msa1021460:CDS 35.0%
!! CGGTCTATGTTGTTTCATAT+TGG - chr7_1:45855897-45855916 Msa1021460:CDS 35.0%
ATCATGTTCTGTGTCTGTAT+CGG + chr7_1:45855953-45855972 None:intergenic 35.0%
TCAGAAATGTGGAAGAATAG+AGG - chr7_1:45856137-45856156 Msa1021460:intron 35.0%
AAGCTAAGACTTATCTACCA+AGG - chr7_1:45856183-45856202 Msa1021460:intron 35.0%
ACCAAGAGAAATACTTGGTT+AGG - chr7_1:45856364-45856383 Msa1021460:intron 35.0%
!!! TGACACTATTGTTTTAGTCC+CGG - chr7_1:45856661-45856680 Msa1021460:intron 35.0%
CAGGAAAAAAACAGTATTGC+AGG + chr7_1:45856762-45856781 None:intergenic 35.0%
CTTTATCTCACTCATATTGG+AGG + chr7_1:45856924-45856943 None:intergenic 35.0%
CTCCAATATGAGTGAGATAA+AGG - chr7_1:45856922-45856941 Msa1021460:intron 35.0%
GTCCTTTATCTCACTCATAT+TGG + chr7_1:45856927-45856946 None:intergenic 35.0%
TATATCGAGAAACACTTGTG+TGG - chr7_1:45857385-45857404 Msa1021460:intron 35.0%
TGTGACCAAACCAAAATTCT+TGG + chr7_1:45857513-45857532 None:intergenic 35.0%
AAGAGAGAAGAGAGAGAAAA+TGG - chr7_1:45857449-45857468 Msa1021460:intron 35.0%
TGTGACCAAACCAAAATTCT+TGG - chr7_1:45857513-45857532 Msa1021460:intron 35.0%
!!! AAGGACCAAGAATTTTGGTT+TGG + chr7_1:45857521-45857540 None:intergenic 35.0%
!! GTAGTTTGTCTTTTGCATGT+AGG + chr7_1:45857624-45857643 None:intergenic 35.0%
GCAAAAGACAAACTACATGA+TGG - chr7_1:45857628-45857647 Msa1021460:intron 35.0%
AGATTGTCTCATTAGGCATA+AGG + chr7_1:45857717-45857736 None:intergenic 35.0%
CATAACGAGATTGTCTCATT+AGG + chr7_1:45857724-45857743 None:intergenic 35.0%
AATGAGACAATCTCGTTATG+AGG - chr7_1:45857724-45857743 Msa1021460:intron 35.0%
! ATTCTTGAGCAAGTTTTGCA+AGG - chr7_1:45857758-45857777 Msa1021460:CDS 35.0%
CAATTCTTCAGCTCTATTTC+TGG + chr7_1:45857813-45857832 None:intergenic 35.0%
! TCATCCATAAACTTAGGTTG+TGG + chr7_1:45857860-45857879 None:intergenic 35.0%
!!! CTTGATGATGACCTTTTGAA+AGG - chr7_1:45857887-45857906 Msa1021460:CDS 35.0%
!! GACCTTTTGAAAGGAATTGA+TGG - chr7_1:45857896-45857915 Msa1021460:CDS 35.0%
! TATTGTCTTAGGTCTAGGAT+TGG - chr7_1:45858035-45858054 Msa1021460:intron 35.0%
! ATTGTCTTAGGTCTAGGATT+GGG - chr7_1:45858036-45858055 Msa1021460:intron 35.0%
GCAAAGGACGAATATGAAAT+TGG + chr7_1:45858082-45858101 None:intergenic 35.0%
TTTAAGGAGAAAAAGGGCAA+AGG + chr7_1:45858098-45858117 None:intergenic 35.0%
! TGCCCTTTTTCTCCTTAAAA+TGG - chr7_1:45858099-45858118 Msa1021460:intron 35.0%
TTTCCAAGATTCGTGAGTAT+AGG - chr7_1:45858230-45858249 Msa1021460:intron 35.0%
TTCCAAGATTCGTGAGTATA+GGG - chr7_1:45858231-45858250 Msa1021460:intron 35.0%
! ATTGTCACAAGTTTGCTCAA+GGG - chr7_1:45858322-45858341 Msa1021460:intron 35.0%
ATAAGAATTGGTACTGCACT+TGG - chr7_1:45858410-45858429 Msa1021460:intron 35.0%
TGAAAGTGAAGATGATGATC+CGG - chr7_1:45858558-45858577 Msa1021460:intron 35.0%
!! TAGTTGGTGTAGAAGGTATT+TGG + chr7_1:45858739-45858758 None:intergenic 35.0%
TTAAGTTAGAGTTGAAAGGG+TGG + chr7_1:45858768-45858787 None:intergenic 35.0%
! GGGTTTAAGTTAGAGTTGAA+AGG + chr7_1:45858772-45858791 None:intergenic 35.0%
GGGAGAGATTCAGTGAAAAT+GGG + chr7_1:45854704-45854723 None:intergenic 40.0%
TGGGAGAGATTCAGTGAAAA+TGG + chr7_1:45854705-45854724 None:intergenic 40.0%
TCTCTCCCATCTTCATCATA+AGG - chr7_1:45854716-45854735 Msa1021460:CDS 40.0%
CATGCACCTTATGATGAAGA+TGG + chr7_1:45854725-45854744 None:intergenic 40.0%
!! GCATGTTTGGCTTTGACATA+AGG + chr7_1:45854898-45854917 None:intergenic 40.0%
!!! GCTTATATTTTGGTACGGAG+AGG - chr7_1:45855296-45855315 Msa1021460:intron 40.0%
!! TTTTGGAAGGCAATCAATGC+TGG - chr7_1:45855625-45855644 Msa1021460:CDS 40.0%
AATCAATGCTGGAGACAAAG+TGG - chr7_1:45855636-45855655 Msa1021460:CDS 40.0%
CAAAGTGGATAGTGCTCTAA+AGG - chr7_1:45855651-45855670 Msa1021460:CDS 40.0%
!! GGATAGTGCTCTAAAGGATA+TGG - chr7_1:45855657-45855676 Msa1021460:CDS 40.0%
ACCTTGTATGACATGACACA+TGG - chr7_1:45856030-45856049 Msa1021460:intron 40.0%
CATGACACATGGCTAAAACT+CGG - chr7_1:45856041-45856060 Msa1021460:intron 40.0%
AAGACTTATCTACCAAGGTG+AGG - chr7_1:45856188-45856207 Msa1021460:intron 40.0%
CTTTGTCGTCCTTCCATTAA+AGG + chr7_1:45856214-45856233 None:intergenic 40.0%
GCAAGAAACAGCAAGACTAT+TGG - chr7_1:45856275-45856294 Msa1021460:intron 40.0%
GCCTAACCAAGTATTTCTCT+TGG + chr7_1:45856368-45856387 None:intergenic 40.0%
TGTGTGAGAAAGTCTTCTGT+AGG + chr7_1:45856549-45856568 None:intergenic 40.0%
! ATTCGTACATGGACTAAAGC+AGG + chr7_1:45856781-45856800 None:intergenic 40.0%
GGCTACAAGCAAAAACAAAG+TGG - chr7_1:45857243-45857262 Msa1021460:CDS 40.0%
CAAACCAAAATTCTTGGTCC+TGG + chr7_1:45857519-45857538 None:intergenic 40.0%
!!! CAGGACCAAGAATTTTGGTT+TGG - chr7_1:45857410-45857429 Msa1021460:intron 40.0%
! TGGACAAGGACCAAGAATTT+TGG + chr7_1:45857526-45857545 None:intergenic 40.0%
GAGAAAATCTTGTGTGGACA+AGG + chr7_1:45857540-45857559 None:intergenic 40.0%
TTGTTTAGGGAAACTTGGGT+TGG - chr7_1:45857597-45857616 Msa1021460:intron 40.0%
TGTTTAGGGAAACTTGGGTT+GGG - chr7_1:45857598-45857617 Msa1021460:intron 40.0%
! GGCTAAATTCAAAGCCTTGT+TGG + chr7_1:45857696-45857715 None:intergenic 40.0%
GACTTGATTTCATCAGAACC+TGG + chr7_1:45857791-45857810 None:intergenic 40.0%
! AAACTTAGGTTGTGGCAAGT+TGG + chr7_1:45857852-45857871 None:intergenic 40.0%
CTTGCCACAACCTAAGTTTA+TGG - chr7_1:45857853-45857872 Msa1021460:CDS 40.0%
GGAAGTCTTCTTGATCTAGT+TGG + chr7_1:45857941-45857960 None:intergenic 40.0%
AAGAAGACTTCCCATCTTTG+AGG - chr7_1:45857949-45857968 Msa1021460:intron 40.0%
! CATTGTCACAAGTTTGCTCA+AGG - chr7_1:45858321-45858340 Msa1021460:intron 40.0%
!! TACTGCACTTGGTGTAAGTT+TGG - chr7_1:45858421-45858440 Msa1021460:intron 40.0%
! GATCATGTTTGTGTTTCTGC+TGG - chr7_1:45858457-45858476 Msa1021460:intron 40.0%
!! TGTTTCTGCTGGTGAGATTT+TGG - chr7_1:45858468-45858487 Msa1021460:intron 40.0%
!!! TGGTGAGATTTTGGTTGATG+AGG - chr7_1:45858477-45858496 Msa1021460:intron 40.0%
AAACATACGCATCTCAGCTA+TGG + chr7_1:45858623-45858642 None:intergenic 40.0%
AGCTGAGATGCGTATGTTTA+TGG - chr7_1:45858624-45858643 Msa1021460:CDS 40.0%
!! GTAGAAGGTATTTGGTGACA+TGG + chr7_1:45858731-45858750 None:intergenic 40.0%
TGTCAAAGCCAAACATGCTC+AGG - chr7_1:45854900-45854919 Msa1021460:CDS 45.0%
AAAGCCAAACATGCTCAGGT+AGG - chr7_1:45854904-45854923 Msa1021460:CDS 45.0%
AGTACCTACCTGAGCATGTT+TGG + chr7_1:45854911-45854930 None:intergenic 45.0%
GCCATGTGTCATGTCATACA+AGG + chr7_1:45856034-45856053 None:intergenic 45.0%
TACCAAGGTGAGGCCTTTAA+TGG - chr7_1:45856198-45856217 Msa1021460:intron 45.0%
TTCCATTAAAGGCCTCACCT+TGG + chr7_1:45856203-45856222 None:intergenic 45.0%
AAGGTGAGGCCTTTAATGGA+AGG - chr7_1:45856202-45856221 Msa1021460:intron 45.0%
GCAAAGCAGGTATATTTGCG+AGG - chr7_1:45857047-45857066 Msa1021460:intron 45.0%
! TGGACCAGGACCAAGAATTT+TGG - chr7_1:45857405-45857424 Msa1021460:intron 45.0%
GAGAGAAGAGAAGAGAGAGA+AGG - chr7_1:45857476-45857495 Msa1021460:intron 45.0%
GACAAACTACATGATGGCTG+AGG - chr7_1:45857634-45857653 Msa1021460:intron 45.0%
AAACTACATGATGGCTGAGG+TGG - chr7_1:45857637-45857656 Msa1021460:intron 45.0%
GATAGATGCTGATGCCAACA+AGG - chr7_1:45857679-45857698 Msa1021460:intron 45.0%
! GTTTTGCAAGGAAAGCTTCC+AGG - chr7_1:45857770-45857789 Msa1021460:CDS 45.0%
CTCCCTATACTCACGAATCT+TGG + chr7_1:45858236-45858255 None:intergenic 45.0%
!! TGAGAAGTGCTGAATTCCCA+AGG - chr7_1:45858292-45858311 Msa1021460:intron 45.0%
TGCTCAAGGGACAATCTGAT+AGG - chr7_1:45858335-45858354 Msa1021460:intron 45.0%
AAGGGACAATCTGATAGGAG+TGG - chr7_1:45858340-45858359 Msa1021460:intron 45.0%
!! GCACTTGGTGTAAGTTTGGA+TGG - chr7_1:45858425-45858444 Msa1021460:intron 45.0%
!!! GATTTTGGTTGATGAGGTGC+AGG - chr7_1:45858483-45858502 Msa1021460:intron 45.0%
! GCAGGTGATGATGAAGTGAT+TGG - chr7_1:45858529-45858548 Msa1021460:intron 45.0%
AGTACGACTTGCAAGCCAAT+CGG + chr7_1:45858595-45858614 None:intergenic 45.0%
! GTCTGGATAGTTGGTGTAGA+AGG + chr7_1:45858746-45858765 None:intergenic 45.0%
TTAGAGTTGAAAGGGTGGTC+TGG + chr7_1:45858763-45858782 None:intergenic 45.0%
!!! ATTAAAAACATATTTTTATA+AGG - chr7_1:45857076-45857095 Msa1021460:intron 5.0%
GTGCATGTGCCCTGAAAAAG+AGG - chr7_1:45854738-45854757 Msa1021460:CDS 50.0%
ACAAAGACTGCTCGCTCTCA+TGG - chr7_1:45856228-45856247 Msa1021460:intron 50.0%
GAGAAACACTTGTGTGGACC+AGG - chr7_1:45857391-45857410 Msa1021460:intron 50.0%
!! ATGGATGAGGGTGTTGTTGC+AGG - chr7_1:45858511-45858530 Msa1021460:intron 50.0%
! GGAGAGCATGTTTGATGCTC+AGG - chr7_1:45858645-45858664 Msa1021460:CDS 50.0%
TGTTTGATGCTCAGGATGCG+AGG - chr7_1:45858653-45858672 Msa1021460:CDS 50.0%
GAAAGGGTGGTCTGGATAGT+TGG + chr7_1:45858755-45858774 None:intergenic 50.0%
TGATGAGGTGCAGGCTGCAA+TGG - chr7_1:45858492-45858511 Msa1021460:intron 55.0%
GTGCAGGCTGCAATGGATGA+GGG - chr7_1:45858499-45858518 Msa1021460:intron 55.0%
CCAATCGGAGGAGCAGAATC+CGG + chr7_1:45858580-45858599 None:intergenic 55.0%
ACGACTTGCAAGCCAATCGG+AGG + chr7_1:45858592-45858611 None:intergenic 55.0%
GGTGCAGGCTGCAATGGATG+AGG - chr7_1:45858498-45858517 Msa1021460:intron 60.0%
CCGGATTCTGCTCCTCCGAT+TGG - chr7_1:45858577-45858596 Msa1021460:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 45854701 45858828 45854701 ID=Msa1021460;Name=Msa1021460
chr7_1 mRNA 45854701 45858828 45854701 ID=Msa1021460-mRNA-1;Parent=Msa1021460;Name=Msa1021460-mRNA-1;_AED=0.20;_eAED=0.20;_QI=104|0.75|0.6|1|1|1|5|0|418
chr7_1 exon 45854701 45855078 45854701 ID=Msa1021460-mRNA-1:exon:9080;Parent=Msa1021460-mRNA-1
chr7_1 exon 45855532 45855924 45855532 ID=Msa1021460-mRNA-1:exon:9079;Parent=Msa1021460-mRNA-1
chr7_1 exon 45857233 45857388 45857233 ID=Msa1021460-mRNA-1:exon:9078;Parent=Msa1021460-mRNA-1
chr7_1 exon 45857728 45857940 45857728 ID=Msa1021460-mRNA-1:exon:9077;Parent=Msa1021460-mRNA-1
chr7_1 exon 45858608 45858828 45858608 ID=Msa1021460-mRNA-1:exon:9076;Parent=Msa1021460-mRNA-1
chr7_1 five_prime_UTR 45858725 45858828 45858725 ID=Msa1021460-mRNA-1:five_prime_utr;Parent=Msa1021460-mRNA-1
chr7_1 CDS 45858608 45858724 45858608 ID=Msa1021460-mRNA-1:cds;Parent=Msa1021460-mRNA-1
chr7_1 CDS 45857728 45857940 45857728 ID=Msa1021460-mRNA-1:cds;Parent=Msa1021460-mRNA-1
chr7_1 CDS 45857233 45857388 45857233 ID=Msa1021460-mRNA-1:cds;Parent=Msa1021460-mRNA-1
chr7_1 CDS 45855532 45855924 45855532 ID=Msa1021460-mRNA-1:cds;Parent=Msa1021460-mRNA-1
chr7_1 CDS 45854701 45855078 45854701 ID=Msa1021460-mRNA-1:cds;Parent=Msa1021460-mRNA-1
Gene Sequence

>Msa1021460

ATGGAAGGAATTAGTGTATTGAAGAAAAGTTCTAAAGGAAAGAAAGAAGATCTCTATCATGTTATTCATAAGGTTCCTTATGGTGATACTCCTTATGTCAAAGCCAAACATGCTCAGTTGGTGGATAAAGATCCAGAAGTTGCTATAGTGTACTTTTGGAAGGCAATCAATGCTGGAGACAAAGTGGATAGTGCTCTAAAGGATATGGCTGTTGTGATGAAGCAATTAGATAGAGCTGAAGAAGCTATTGAAGCTATCAAATCTTTTAGAGGTCTTTGCAACAAACATTCTCAAGAGTCACTTGATAATGTACTTCTTGATCTTTACAAGAAATGTGGAAGAATAGAGGAGCAAATTGAATTATTGAAAAGAAAGCTAAGACTTATCTACCAAGGTGAGGCCTTTAATGGAAGGACGACAAAGACTGCTCGCTCTCATGGCAAGAAGTTCCAAGTTTCTATCAAGCAAGAAACAGCAAGACTATTGGGAAACTTGGGTTGGGCCTACATGCAAAAGACAAACTACATGATGGCTGAGGTGGTTTTCAAGAAAGCACAAATGATAGATGCTGATGCCAACAAGGCTTTGAATTTAGCCTTATGCCTAATGAGACAATCTCGTTATGAGGAAGCCTATTTAATTCTTGAGCAAGTTTTGCAAGGAAAGCTTCCAGGTTCTGATGAAATCAAGTCCAGAAATAGAGCTGAAGAATTGCTTGTAGAATTGAATGCCAACTTGCCACAACCTAAGTTTATGGATGATTTAGGGCTTGATGATGACCTTTTGAAAGGAATTGATGGATTACTTAATGTTTGGAGTCCAACTAGATCAAGAAGACTTCCCATCTTTGAGGAAATATCTTCTTTTAGAGATCAATTGTGCTATGATCATGTTTGTGTTTCTGCTGGTGAGATTTTGGTTGATGAGGTGCAGGCTGCAATGGATGAGGGTGTTGTTGCAGGTGATGATGAAGTGATTGGTGAAGCTGAAAGTGAAGATGATGATCCGGATTCTGCTCCTCCGATTGGCTTGCAAGTCGTACTTGATTCCATAGCTGAGATGCGTATGTTTATGGAGAGCATGTTTGATGCTCAGGATGCGAGGCGTACAATGATTGAATCATTAATTCAGAGGATCGAAAACAACAATGCTTTCACCATGTCACCAAATACCTTCTACACCAACTATCCAGACCACCCTTTCAACTCTAACTTAAACCCAATGTTATGTACTTTGAATTTTATTGTGTCTACTTAA

Protein sequence

>Msa1021460

MEGISVLKKSSKGKKEDLYHVIHKVPYGDTPYVKAKHAQLVDKDPEVAIVYFWKAINAGDKVDSALKDMAVVMKQLDRAEEAIEAIKSFRGLCNKHSQESLDNVLLDLYKKCGRIEEQIELLKRKLRLIYQGEAFNGRTTKTARSHGKKFQVSIKQETARLLGNLGWAYMQKTNYMMAEVVFKKAQMIDADANKALNLALCLMRQSRYEEAYLILEQVLQGKLPGSDEIKSRNRAEELLVELNANLPQPKFMDDLGLDDDLLKGIDGLLNVWSPTRSRRLPIFEEISSFRDQLCYDHVCVSAGEILVDEVQAAMDEGVVAGDDEVIGEAESEDDDPDSAPPIGLQVVLDSIAEMRMFMESMFDAQDARRTMIESLIQRIENNNAFTMSPNTFYTNYPDHPFNSNLNPMLCTLNFIVST*