Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1021460 | AES79195.2 | 91.605 | 405 | 15 | 2 | 1 | 404 | 18 | 404 | 0.0 | 726 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1021460 | sp|Q8GXU5|SDI1_ARATH | 65.172 | 290 | 94 | 3 | 9 | 293 | 17 | 304 | 1.18e-129 | 379 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1021460 | G7L2B4 | 91.605 | 405 | 15 | 2 | 1 | 404 | 18 | 404 | 0.0 | 726 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0692110 | Msa1021460 | 0.800676 | 1.288715e-48 | -8.615850e-47 |
Msa1021460 | Msa1060220 | 0.887252 | 1.679375e-72 | -8.615850e-47 |
Msa1021460 | Msa1105470 | 0.973602 | 1.046710e-136 | -8.615850e-47 |
Msa1021460 | Msa1148900 | 0.957560 | 2.020204e-115 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1021460 | MtrunA17_Chr7g0237621 | 99.317 | 293 | 2 | 0 | 1 | 293 | 18 | 310 | 0.0 | 599 |
Msa1021460 | MtrunA17_Chr7g0237581 | 76.325 | 283 | 67 | 0 | 11 | 293 | 16 | 298 | 1.18e-162 | 459 |
Msa1021460 | MtrunA17_Chr8g0371521 | 53.731 | 268 | 111 | 3 | 15 | 274 | 32 | 294 | 7.94e-93 | 288 |
Msa1021460 | MtrunA17_Chr2g0292681 | 54.286 | 245 | 109 | 1 | 15 | 256 | 47 | 291 | 3.74e-84 | 269 |
Msa1021460 | MtrunA17_Chr7g0237611 | 85.106 | 94 | 13 | 1 | 312 | 404 | 22 | 115 | 2.40e-48 | 160 |
Msa1021460 | MtrunA17_Chr2g0292671 | 45.342 | 161 | 85 | 1 | 88 | 245 | 2 | 162 | 1.30e-41 | 145 |
Msa1021460 | MtrunA17_Chr2g0292661 | 71.667 | 60 | 17 | 0 | 15 | 74 | 44 | 103 | 1.11e-23 | 94.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1021460 | AT5G48850.1 | 65.172 | 290 | 94 | 3 | 9 | 293 | 17 | 304 | 1.20e-130 | 379 |
Msa1021460 | AT1G04770.1 | 58.596 | 285 | 105 | 5 | 19 | 293 | 20 | 301 | 1.01e-111 | 330 |
Msa1021460 | AT3G51280.1 | 55.385 | 260 | 111 | 2 | 19 | 274 | 30 | 288 | 8.45e-92 | 284 |
Msa1021460 | AT4G20900.2 | 53.469 | 245 | 106 | 2 | 10 | 248 | 42 | 284 | 1.65e-82 | 260 |
Msa1021460 | AT4G20900.1 | 50.192 | 261 | 106 | 3 | 10 | 248 | 42 | 300 | 2.35e-78 | 249 |
Msa1021460 | AT5G44330.1 | 52.489 | 221 | 102 | 1 | 24 | 241 | 49 | 269 | 4.20e-66 | 218 |
Msa1021460 | AT5G22794.2 | 65.672 | 67 | 23 | 0 | 96 | 162 | 71 | 137 | 1.77e-22 | 95.9 |
Msa1021460 | AT5G22794.1 | 56.716 | 67 | 22 | 1 | 96 | 162 | 71 | 130 | 5.20e-16 | 76.6 |
Find 87 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTAAGTTTATGGATGATTT+AGG | 0.095537 | 7_1:-45855644 | Msa1021460:CDS |
CTTGCCACAACCTAAGTTTA+TGG | 0.146740 | 7_1:-45855654 | Msa1021460:CDS |
CAATTCTTCAGCTCTATTTC+TGG | 0.147773 | 7_1:+45855697 | None:intergenic |
AGCTGAGATGCGTATGTTTA+TGG | 0.178762 | 7_1:-45854883 | Msa1021460:CDS |
CTTTGTCGTCCTTCCATTAA+AGG | 0.194578 | 7_1:+45857296 | None:intergenic |
TGTTTCTGCTGGTGAGATTT+TGG | 0.216667 | 7_1:-45855039 | Msa1021460:CDS |
TGGGAGAGATTCAGTGAAAA+TGG | 0.247645 | 7_1:+45858805 | None:intergenic |
CTAAGTTTATGGATGATTTA+GGG | 0.273109 | 7_1:-45855643 | Msa1021460:CDS |
GTTATTCATAAGGTTCCTTA+TGG | 0.304411 | 7_1:-45858642 | Msa1021460:CDS |
TACCAAGGTGAGGCCTTTAA+TGG | 0.310819 | 7_1:-45857309 | Msa1021460:CDS |
AACTTGCTCAAGAATTAAAT+AGG | 0.338540 | 7_1:+45855757 | None:intergenic |
TTGATGGATTACTTAATGTT+TGG | 0.342938 | 7_1:-45855595 | Msa1021460:CDS |
TAGTTGGTGTAGAAGGTATT+TGG | 0.348772 | 7_1:+45854771 | None:intergenic |
AAGTTGCTATAGTGTACTTT+TGG | 0.357890 | 7_1:-45857899 | Msa1021460:CDS |
AGTACCTACCTGAGCATGTT+TGG | 0.365922 | 7_1:+45858599 | None:intergenic |
GTCTGGATAGTTGGTGTAGA+AGG | 0.369601 | 7_1:+45854764 | None:intergenic |
AAGTACACTATAGCAACTTC+TGG | 0.375170 | 7_1:+45857903 | None:intergenic |
GGGAGAGATTCAGTGAAAAT+GGG | 0.383949 | 7_1:+45858806 | None:intergenic |
GGATAGTGCTCTAAAGGATA+TGG | 0.385948 | 7_1:-45857850 | Msa1021460:CDS |
ATGGATGAGGGTGTTGTTGC+AGG | 0.401577 | 7_1:-45854996 | Msa1021460:CDS |
GCATGTTTGGCTTTGACATA+AGG | 0.405107 | 7_1:+45858612 | None:intergenic |
TCTCTATCATGTTATTCATA+AGG | 0.406833 | 7_1:-45858652 | Msa1021460:CDS |
AGAAGATATTTCCTCAAAGA+TGG | 0.410475 | 7_1:+45855547 | None:intergenic |
ATTGATTGTTTAGGGAAACT+TGG | 0.412436 | 7_1:-45855915 | Msa1021460:intron |
CATAACGAGATTGTCTCATT+AGG | 0.414447 | 7_1:+45855786 | None:intergenic |
TGTTTAGGGAAACTTGGGTT+GGG | 0.416088 | 7_1:-45855909 | Msa1021460:intron |
ATCCATCAATTCCTTTCAAA+AGG | 0.416312 | 7_1:+45855609 | None:intergenic |
AATTCAAAGTACATAACATT+GGG | 0.418986 | 7_1:+45854718 | None:intergenic |
AAGAAGACTTCCCATCTTTG+AGG | 0.419105 | 7_1:-45855558 | Msa1021460:CDS |
GATCATGTTTGTGTTTCTGC+TGG | 0.423708 | 7_1:-45855050 | Msa1021460:CDS |
GGAAGTCTTCTTGATCTAGT+TGG | 0.437256 | 7_1:+45855569 | None:intergenic |
CCGGATTCTGCTCCTCCGAT+TGG | 0.439493 | 7_1:-45854930 | Msa1021460:CDS |
GGCTAAATTCAAAGCCTTGT+TGG | 0.440956 | 7_1:+45855814 | None:intergenic |
CAAAGTGGATAGTGCTCTAA+AGG | 0.448477 | 7_1:-45857856 | Msa1021460:CDS |
GGAGAGCATGTTTGATGCTC+AGG | 0.453568 | 7_1:-45854862 | Msa1021460:CDS |
GGTTTAAGTTAGAGTTGAAA+GGG | 0.457070 | 7_1:+45854739 | None:intergenic |
GCAAGAAACAGCAAGACTAT+TGG | 0.460999 | 7_1:-45857232 | Msa1021460:intron |
TCTCTCCCATCTTCATCATA+AGG | 0.470766 | 7_1:-45858791 | Msa1021460:five_prime_UTR |
TTAGAGTTGAAAGGGTGGTC+TGG | 0.474314 | 7_1:+45854747 | None:intergenic |
TGAAAGTGAAGATGATGATC+CGG | 0.478553 | 7_1:-45854949 | Msa1021460:CDS |
TTTCTTGCTTGATAGAAACT+TGG | 0.480530 | 7_1:+45857247 | None:intergenic |
CCTAAATCATCCATAAACTT+AGG | 0.481001 | 7_1:+45855644 | None:intergenic |
GTGACATATACAGAGAGAAA+TGG | 0.484017 | 7_1:-45858721 | Msa1021460:exon |
AGATTGTCTCATTAGGCATA+AGG | 0.484330 | 7_1:+45855793 | None:intergenic |
GAAAGGGTGGTCTGGATAGT+TGG | 0.488319 | 7_1:+45854755 | None:intergenic |
CCAATCGGAGGAGCAGAATC+CGG | 0.489121 | 7_1:+45854930 | None:intergenic |
GGGTTTAAGTTAGAGTTGAA+AGG | 0.495838 | 7_1:+45854738 | None:intergenic |
TGTCAAAGCCAAACATGCTC+AGG | 0.496739 | 7_1:-45858607 | Msa1021460:intron |
CATGCACCTTATGATGAAGA+TGG | 0.506907 | 7_1:+45858785 | None:intergenic |
AAATTCAAAGTACATAACAT+TGG | 0.511981 | 7_1:+45854717 | None:intergenic |
ACAAAGACTGCTCGCTCTCA+TGG | 0.512305 | 7_1:-45857279 | Msa1021460:CDS |
AATGAGACAATCTCGTTATG+AGG | 0.514397 | 7_1:-45855783 | Msa1021460:CDS |
TTGTTTAGGGAAACTTGGGT+TGG | 0.515491 | 7_1:-45855910 | Msa1021460:intron |
AAACATACGCATCTCAGCTA+TGG | 0.517065 | 7_1:+45854887 | None:intergenic |
TGATGAGGTGCAGGCTGCAA+TGG | 0.517896 | 7_1:-45855015 | Msa1021460:CDS |
TCAGAAATGTGGAAGAATAG+AGG | 0.535352 | 7_1:-45857370 | Msa1021460:intron |
GAAGATATTTCCTCAAAGAT+GGG | 0.535613 | 7_1:+45855548 | None:intergenic |
TGTACTTCTTGATCTTTACA+AGG | 0.536497 | 7_1:-45857727 | Msa1021460:intron |
GACTTGATTTCATCAGAACC+TGG | 0.545316 | 7_1:+45855719 | None:intergenic |
TTGATTGTTTAGGGAAACTT+GGG | 0.545737 | 7_1:-45855914 | Msa1021460:intron |
AAACTTAGGTTGTGGCAAGT+TGG | 0.547589 | 7_1:+45855658 | None:intergenic |
GGAGAGATTCAGTGAAAATG+GGG | 0.548864 | 7_1:+45858807 | None:intergenic |
ACATAAGGAGTATCACCATA+AGG | 0.554287 | 7_1:+45858627 | None:intergenic |
AGTACGACTTGCAAGCCAAT+CGG | 0.558590 | 7_1:+45854915 | None:intergenic |
TCATCCATAAACTTAGGTTG+TGG | 0.560954 | 7_1:+45855650 | None:intergenic |
GTATTGAAGAAAAGTTCTAA+AGG | 0.565096 | 7_1:-45858687 | Msa1021460:CDS |
GCAGGTGATGATGAAGTGAT+TGG | 0.580959 | 7_1:-45854978 | Msa1021460:CDS |
TTAAGTTAGAGTTGAAAGGG+TGG | 0.582483 | 7_1:+45854742 | None:intergenic |
ATGCACCTTATGATGAAGAT+GGG | 0.587704 | 7_1:+45858786 | None:intergenic |
GGTGCAGGCTGCAATGGATG+AGG | 0.592082 | 7_1:-45855009 | Msa1021460:CDS |
AAACTACATGATGGCTGAGG+TGG | 0.597629 | 7_1:-45855870 | Msa1021460:CDS |
TGATTGAATCATTAATTCAG+AGG | 0.599349 | 7_1:-45854824 | Msa1021460:CDS |
GCAAAAGACAAACTACATGA+TGG | 0.600357 | 7_1:-45855879 | Msa1021460:CDS |
TTCCATTAAAGGCCTCACCT+TGG | 0.605669 | 7_1:+45857307 | None:intergenic |
GATAGATGCTGATGCCAACA+AGG | 0.611933 | 7_1:-45855828 | Msa1021460:CDS |
AAGGTGAGGCCTTTAATGGA+AGG | 0.621345 | 7_1:-45857305 | Msa1021460:CDS |
TGTTTGATGCTCAGGATGCG+AGG | 0.628433 | 7_1:-45854854 | Msa1021460:CDS |
AATCAATGCTGGAGACAAAG+TGG | 0.650220 | 7_1:-45857871 | Msa1021460:CDS |
CATATACAGAGAGAAATGGA+AGG | 0.651435 | 7_1:-45858717 | Msa1021460:exon |
GACAAACTACATGATGGCTG+AGG | 0.652612 | 7_1:-45855873 | Msa1021460:CDS |
GTGCAGGCTGCAATGGATGA+GGG | 0.654889 | 7_1:-45855008 | Msa1021460:CDS |
AAGCTAAGACTTATCTACCA+AGG | 0.663143 | 7_1:-45857324 | Msa1021460:CDS |
GTAGAAGGTATTTGGTGACA+TGG | 0.666812 | 7_1:+45854779 | None:intergenic |
AAGACTTATCTACCAAGGTG+AGG | 0.669025 | 7_1:-45857319 | Msa1021460:CDS |
ACGACTTGCAAGCCAATCGG+AGG | 0.669091 | 7_1:+45854918 | None:intergenic |
AGAGATTCAGTGAAAATGGG+GGG | 0.681806 | 7_1:+45858809 | None:intergenic |
GAGAGATTCAGTGAAAATGG+GGG | 0.712050 | 7_1:+45858808 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATTATTTTATTTTAAAATT+TGG | + | chr7_1:45857164-45857183 | None:intergenic | 0.0% |
!!! | AATTTTAAAATAAAATAATA+TGG | - | chr7_1:45857164-45857183 | Msa1021460:intron | 0.0% |
!! | GAATAACTTAAAAATAAAAA+AGG | + | chr7_1:45855395-45855414 | None:intergenic | 10.0% |
!! | CTATATAATTAGTAAATTAT+CGG | - | chr7_1:45855877-45855896 | Msa1021460:CDS | 10.0% |
!!! | TTTAAATTTTTTAGTTTCAT+GGG | + | chr7_1:45856422-45856441 | None:intergenic | 10.0% |
!!! | TTTTAAATTTTTTAGTTTCA+TGG | + | chr7_1:45856423-45856442 | None:intergenic | 10.0% |
!! | AAATTTACTTATATATGAAT+TGG | - | chr7_1:45856871-45856890 | Msa1021460:intron | 10.0% |
!! | AAAATCAAATACTATATAAA+AGG | + | chr7_1:45856898-45856917 | None:intergenic | 10.0% |
!!! | GTTTATCAATATTTTTTTAA+AGG | + | chr7_1:45857012-45857031 | None:intergenic | 10.0% |
!!! | TTTGTAAAAATGATTATTTT+TGG | - | chr7_1:45857338-45857357 | Msa1021460:CDS | 10.0% |
!!! | TTGTAAAAATGATTATTTTT+GGG | - | chr7_1:45857339-45857358 | Msa1021460:CDS | 10.0% |
!! | ATTTAGAGATCAAATTAAAA+GGG | + | chr7_1:45855023-45855042 | None:intergenic | 15.0% |
!! | AATTTAGAGATCAAATTAAA+AGG | + | chr7_1:45855024-45855043 | None:intergenic | 15.0% |
!!! | AATATTTTTGGTACAAAATT+TGG | + | chr7_1:45855257-45855276 | None:intergenic | 15.0% |
!!! | TTCAAAAAGACAAATATTTT+TGG | + | chr7_1:45855269-45855288 | None:intergenic | 15.0% |
!! | ATTTACACAAAAACTAAATT+AGG | + | chr7_1:45856118-45856137 | None:intergenic | 15.0% |
!! | TTATATTGTTCAAATATTAC+CGG | + | chr7_1:45856683-45856702 | None:intergenic | 15.0% |
!!! | ATATATAAGTAAATTTTGCA+AGG | + | chr7_1:45856867-45856886 | None:intergenic | 15.0% |
!! | TAAATAAATATTACAACATG+TGG | - | chr7_1:45856947-45856966 | Msa1021460:intron | 15.0% |
!!! | AAATTTGTTCTTATAGAAAT+TGG | + | chr7_1:45856978-45856997 | None:intergenic | 15.0% |
!!! | GAAATACAAAAAATTGTTTT+AGG | + | chr7_1:45857190-45857209 | None:intergenic | 15.0% |
!!! | CAAATAAATATTTTTACAAG+AGG | - | chr7_1:45857222-45857241 | Msa1021460:intron | 15.0% |
!! | TGACTTTAAATTGATGTATA+TGG | - | chr7_1:45855098-45855117 | Msa1021460:intron | 20.0% |
!!! | TAATTTACTATTACCTTTTC+AGG | - | chr7_1:45855140-45855159 | Msa1021460:intron | 20.0% |
!!! | GAATCATTTTGCTTATATTT+TGG | - | chr7_1:45855286-45855305 | Msa1021460:intron | 20.0% |
!!! | ATTTTGCTTATATTTTGGTA+CGG | - | chr7_1:45855291-45855310 | Msa1021460:intron | 20.0% |
!!! | TTCTACTTTTTTACATTCTT+TGG | - | chr7_1:45855429-45855448 | Msa1021460:intron | 20.0% |
!! | AATATAATGAAACACATGTT+TGG | + | chr7_1:45855811-45855830 | None:intergenic | 20.0% |
!! | GATGTTCAATTATCATATTA+TGG | - | chr7_1:45855840-45855859 | Msa1021460:CDS | 20.0% |
!! | TATATTGTTCAAATATTACC+GGG | + | chr7_1:45856682-45856701 | None:intergenic | 20.0% |
!! | AAAGTAAAAATATTCGTACA+TGG | + | chr7_1:45856792-45856811 | None:intergenic | 20.0% |
!! | CAAAATGTAGTATATTTACA+AGG | + | chr7_1:45856819-45856838 | None:intergenic | 20.0% |
!!! | AATTTTTTTCTTCAACACAA+TGG | - | chr7_1:45857290-45857309 | Msa1021460:CDS | 20.0% |
!!! | AGATTTTCTCTTTTATATCT+AGG | - | chr7_1:45857550-45857569 | Msa1021460:intron | 20.0% |
!! | TATGTTGTATATATTGTCTT+AGG | - | chr7_1:45858024-45858043 | Msa1021460:intron | 20.0% |
!!! | ATTGATGATGAATAATAATG+TGG | - | chr7_1:45858162-45858181 | Msa1021460:intron | 20.0% |
!!! | TTGATGATGAATAATAATGT+GGG | - | chr7_1:45858163-45858182 | Msa1021460:intron | 20.0% |
!! | ATAAGGATGTTAATAAGAAT+TGG | - | chr7_1:45858398-45858417 | Msa1021460:intron | 20.0% |
!! | AATTCAAAGTACATAACATT+GGG | + | chr7_1:45858792-45858811 | None:intergenic | 20.0% |
!! | AAATTCAAAGTACATAACAT+TGG | + | chr7_1:45858793-45858812 | None:intergenic | 20.0% |
!! | GTATTGAAGAAAAGTTCTAA+AGG | - | chr7_1:45854820-45854839 | Msa1021460:CDS | 25.0% |
! | TCTCTATCATGTTATTCATA+AGG | - | chr7_1:45854855-45854874 | Msa1021460:CDS | 25.0% |
! | CAAATTAAAAGGGATAAAGA+TGG | + | chr7_1:45855013-45855032 | None:intergenic | 25.0% |
! | TATGTTATATTGATCAGTTC+TGG | - | chr7_1:45855045-45855064 | Msa1021460:CDS | 25.0% |
! | TAAGAAAGACAGTGTATAAT+AGG | + | chr7_1:45855327-45855346 | None:intergenic | 25.0% |
! | ACACCTTTCATATAAAATGT+TGG | - | chr7_1:45856066-45856085 | Msa1021460:intron | 25.0% |
!! | CAACCAACATTTTATATGAA+AGG | + | chr7_1:45856072-45856091 | None:intergenic | 25.0% |
!! | TTTTGTGTAAATCAGAAATG+TGG | - | chr7_1:45856126-45856145 | Msa1021460:intron | 25.0% |
! | ATTAAACCAAGAGAAATACT+TGG | - | chr7_1:45856359-45856378 | Msa1021460:intron | 25.0% |
! | AACACTAAACATTACATGTT+AGG | - | chr7_1:45856390-45856409 | Msa1021460:intron | 25.0% |
! | CTTGTATGATCTATATTGTA+GGG | + | chr7_1:45856715-45856734 | None:intergenic | 25.0% |
! | CTACAATATAGATCATACAA+GGG | - | chr7_1:45856714-45856733 | Msa1021460:intron | 25.0% |
! | ATAAAAGAGAAAATCTTGTG+TGG | + | chr7_1:45857546-45857565 | None:intergenic | 25.0% |
!! | AACACATTGATTGATTGTTT+AGG | - | chr7_1:45857583-45857602 | Msa1021460:intron | 25.0% |
!! | ACACATTGATTGATTGTTTA+GGG | - | chr7_1:45857584-45857603 | Msa1021460:intron | 25.0% |
!! | AACTTGCTCAAGAATTAAAT+AGG | + | chr7_1:45857753-45857772 | None:intergenic | 25.0% |
! | CTAAGTTTATGGATGATTTA+GGG | - | chr7_1:45857864-45857883 | Msa1021460:CDS | 25.0% |
!!! | TTGATGGATTACTTAATGTT+TGG | - | chr7_1:45857912-45857931 | Msa1021460:CDS | 25.0% |
!!! | ATCTTCTTTTAGAGATCAAT+TGG | - | chr7_1:45857976-45857995 | Msa1021460:intron | 25.0% |
!! | TATTTTTCCTCACCATTTTA+AGG | + | chr7_1:45858114-45858133 | None:intergenic | 25.0% |
! | GAATAATGTTTGCTTGTATT+TGG | - | chr7_1:45858136-45858155 | Msa1021460:intron | 25.0% |
! | CTCAAATAAAACGACAATAA+GGG | + | chr7_1:45858276-45858295 | None:intergenic | 25.0% |
! | TCTCAAATAAAACGACAATA+AGG | + | chr7_1:45858277-45858296 | None:intergenic | 25.0% |
! | TGATTGAATCATTAATTCAG+AGG | - | chr7_1:45858683-45858702 | Msa1021460:CDS | 25.0% |
AAAAAGAGGAGAAACAGAAA+GGG | - | chr7_1:45854752-45854771 | Msa1021460:CDS | 30.0% | |
GTTATTCATAAGGTTCCTTA+TGG | - | chr7_1:45854865-45854884 | Msa1021460:CDS | 30.0% | |
!! | TTAATTTGTCACTCCTGAAA+AGG | + | chr7_1:45855156-45855175 | None:intergenic | 30.0% |
TGCCTGTATTCTGTTATAAA+GGG | + | chr7_1:45855200-45855219 | None:intergenic | 30.0% | |
ATTCCTTGAATCTGAATTCA+AGG | - | chr7_1:45855349-45855368 | Msa1021460:intron | 30.0% | |
AATCCTTGAATTCAGATTCA+AGG | + | chr7_1:45855355-45855374 | None:intergenic | 30.0% | |
TCAATGTGTATGAAATCAGT+TGG | - | chr7_1:45855570-45855589 | Msa1021460:CDS | 30.0% | |
! | AAGTTGCTATAGTGTACTTT+TGG | - | chr7_1:45855608-45855627 | Msa1021460:CDS | 30.0% |
! | GAAGCTATCAAATCTTTTAG+AGG | - | chr7_1:45855721-45855740 | Msa1021460:CDS | 30.0% |
TGTACTTCTTGATCTTTACA+AGG | - | chr7_1:45855780-45855799 | Msa1021460:CDS | 30.0% | |
ACAGAACATGATATTGACAT+TGG | - | chr7_1:45855961-45855980 | Msa1021460:intron | 30.0% | |
TTTCTTGCTTGATAGAAACT+TGG | + | chr7_1:45856263-45856282 | None:intergenic | 30.0% | |
CCTTGTATGATCTATATTGT+AGG | + | chr7_1:45856716-45856735 | None:intergenic | 30.0% | |
CCTACAATATAGATCATACA+AGG | - | chr7_1:45856713-45856732 | Msa1021460:intron | 30.0% | |
!!! | GCTTTGCTTTTGATTTTCAT+TGG | + | chr7_1:45857034-45857053 | None:intergenic | 30.0% |
ATGAAAATCAAAAGCAAAGC+AGG | - | chr7_1:45857034-45857053 | Msa1021460:intron | 30.0% | |
ATTGATTGTTTAGGGAAACT+TGG | - | chr7_1:45857592-45857611 | Msa1021460:intron | 30.0% | |
TTGATTGTTTAGGGAAACTT+GGG | - | chr7_1:45857593-45857612 | Msa1021460:intron | 30.0% | |
CCTAAATCATCCATAAACTT+AGG | + | chr7_1:45857866-45857885 | None:intergenic | 30.0% | |
CCTAAGTTTATGGATGATTT+AGG | - | chr7_1:45857863-45857882 | Msa1021460:CDS | 30.0% | |
ATCCATCAATTCCTTTCAAA+AGG | + | chr7_1:45857901-45857920 | None:intergenic | 30.0% | |
GAAGATATTTCCTCAAAGAT+GGG | + | chr7_1:45857962-45857981 | None:intergenic | 30.0% | |
AGAAGATATTTCCTCAAAGA+TGG | + | chr7_1:45857963-45857982 | None:intergenic | 30.0% | |
GTATATATTGTCTTAGGTCT+AGG | - | chr7_1:45858030-45858049 | Msa1021460:intron | 30.0% | |
TATGAAATTGGAGAAGAGAA+TGG | + | chr7_1:45858070-45858089 | None:intergenic | 30.0% | |
!! | CACCATTTTAAGGAGAAAAA+GGG | + | chr7_1:45858104-45858123 | None:intergenic | 30.0% |
!! | TCACCATTTTAAGGAGAAAA+AGG | + | chr7_1:45858105-45858124 | None:intergenic | 30.0% |
! | TTTTTCTCCTTAAAATGGTG+AGG | - | chr7_1:45858104-45858123 | Msa1021460:intron | 30.0% |
TGTGACAATGTTTATTCCTT+GGG | + | chr7_1:45858311-45858330 | None:intergenic | 30.0% | |
TTGTGACAATGTTTATTCCT+TGG | + | chr7_1:45858312-45858331 | None:intergenic | 30.0% | |
GCTCAAAATGCACTATTATA+AGG | - | chr7_1:45858381-45858400 | Msa1021460:intron | 30.0% | |
! | GGTTTAAGTTAGAGTTGAAA+GGG | + | chr7_1:45858771-45858790 | None:intergenic | 30.0% |
ATGCACCTTATGATGAAGAT+GGG | + | chr7_1:45854724-45854743 | None:intergenic | 35.0% | |
!! | TCTGTTTCTCCTCTTTTTCA+GGG | + | chr7_1:45854750-45854769 | None:intergenic | 35.0% |
!! | TTCTGTTTCTCCTCTTTTTC+AGG | + | chr7_1:45854751-45854770 | None:intergenic | 35.0% |
GAAAAAGAGGAGAAACAGAA+AGG | - | chr7_1:45854751-45854770 | Msa1021460:CDS | 35.0% | |
GTGACATATACAGAGAGAAA+TGG | - | chr7_1:45854786-45854805 | Msa1021460:CDS | 35.0% | |
CATATACAGAGAGAAATGGA+AGG | - | chr7_1:45854790-45854809 | Msa1021460:CDS | 35.0% | |
!! | ACATAAGGAGTATCACCATA+AGG | + | chr7_1:45854883-45854902 | None:intergenic | 35.0% |
CTCCCTTTATAACAGAATAC+AGG | - | chr7_1:45855195-45855214 | Msa1021460:intron | 35.0% | |
CTGCCTGTATTCTGTTATAA+AGG | + | chr7_1:45855201-45855220 | None:intergenic | 35.0% | |
AACAGAATACAGGCAGTAAA+AGG | - | chr7_1:45855205-45855224 | Msa1021460:intron | 35.0% | |
ATGTGTATGAAATCAGTTGG+TGG | - | chr7_1:45855573-45855592 | Msa1021460:CDS | 35.0% | |
AAGTACACTATAGCAACTTC+TGG | + | chr7_1:45855607-45855626 | None:intergenic | 35.0% | |
! | TGCTATAGTGTACTTTTGGA+AGG | - | chr7_1:45855612-45855631 | Msa1021460:CDS | 35.0% |
!! | CGGTCTATGTTGTTTCATAT+TGG | - | chr7_1:45855897-45855916 | Msa1021460:CDS | 35.0% |
ATCATGTTCTGTGTCTGTAT+CGG | + | chr7_1:45855953-45855972 | None:intergenic | 35.0% | |
TCAGAAATGTGGAAGAATAG+AGG | - | chr7_1:45856137-45856156 | Msa1021460:intron | 35.0% | |
AAGCTAAGACTTATCTACCA+AGG | - | chr7_1:45856183-45856202 | Msa1021460:intron | 35.0% | |
ACCAAGAGAAATACTTGGTT+AGG | - | chr7_1:45856364-45856383 | Msa1021460:intron | 35.0% | |
!!! | TGACACTATTGTTTTAGTCC+CGG | - | chr7_1:45856661-45856680 | Msa1021460:intron | 35.0% |
CAGGAAAAAAACAGTATTGC+AGG | + | chr7_1:45856762-45856781 | None:intergenic | 35.0% | |
CTTTATCTCACTCATATTGG+AGG | + | chr7_1:45856924-45856943 | None:intergenic | 35.0% | |
CTCCAATATGAGTGAGATAA+AGG | - | chr7_1:45856922-45856941 | Msa1021460:intron | 35.0% | |
GTCCTTTATCTCACTCATAT+TGG | + | chr7_1:45856927-45856946 | None:intergenic | 35.0% | |
TATATCGAGAAACACTTGTG+TGG | - | chr7_1:45857385-45857404 | Msa1021460:intron | 35.0% | |
TGTGACCAAACCAAAATTCT+TGG | + | chr7_1:45857513-45857532 | None:intergenic | 35.0% | |
AAGAGAGAAGAGAGAGAAAA+TGG | - | chr7_1:45857449-45857468 | Msa1021460:intron | 35.0% | |
TGTGACCAAACCAAAATTCT+TGG | - | chr7_1:45857513-45857532 | Msa1021460:intron | 35.0% | |
!!! | AAGGACCAAGAATTTTGGTT+TGG | + | chr7_1:45857521-45857540 | None:intergenic | 35.0% |
!! | GTAGTTTGTCTTTTGCATGT+AGG | + | chr7_1:45857624-45857643 | None:intergenic | 35.0% |
GCAAAAGACAAACTACATGA+TGG | - | chr7_1:45857628-45857647 | Msa1021460:intron | 35.0% | |
AGATTGTCTCATTAGGCATA+AGG | + | chr7_1:45857717-45857736 | None:intergenic | 35.0% | |
CATAACGAGATTGTCTCATT+AGG | + | chr7_1:45857724-45857743 | None:intergenic | 35.0% | |
AATGAGACAATCTCGTTATG+AGG | - | chr7_1:45857724-45857743 | Msa1021460:intron | 35.0% | |
! | ATTCTTGAGCAAGTTTTGCA+AGG | - | chr7_1:45857758-45857777 | Msa1021460:CDS | 35.0% |
CAATTCTTCAGCTCTATTTC+TGG | + | chr7_1:45857813-45857832 | None:intergenic | 35.0% | |
! | TCATCCATAAACTTAGGTTG+TGG | + | chr7_1:45857860-45857879 | None:intergenic | 35.0% |
!!! | CTTGATGATGACCTTTTGAA+AGG | - | chr7_1:45857887-45857906 | Msa1021460:CDS | 35.0% |
!! | GACCTTTTGAAAGGAATTGA+TGG | - | chr7_1:45857896-45857915 | Msa1021460:CDS | 35.0% |
! | TATTGTCTTAGGTCTAGGAT+TGG | - | chr7_1:45858035-45858054 | Msa1021460:intron | 35.0% |
! | ATTGTCTTAGGTCTAGGATT+GGG | - | chr7_1:45858036-45858055 | Msa1021460:intron | 35.0% |
GCAAAGGACGAATATGAAAT+TGG | + | chr7_1:45858082-45858101 | None:intergenic | 35.0% | |
TTTAAGGAGAAAAAGGGCAA+AGG | + | chr7_1:45858098-45858117 | None:intergenic | 35.0% | |
! | TGCCCTTTTTCTCCTTAAAA+TGG | - | chr7_1:45858099-45858118 | Msa1021460:intron | 35.0% |
TTTCCAAGATTCGTGAGTAT+AGG | - | chr7_1:45858230-45858249 | Msa1021460:intron | 35.0% | |
TTCCAAGATTCGTGAGTATA+GGG | - | chr7_1:45858231-45858250 | Msa1021460:intron | 35.0% | |
! | ATTGTCACAAGTTTGCTCAA+GGG | - | chr7_1:45858322-45858341 | Msa1021460:intron | 35.0% |
ATAAGAATTGGTACTGCACT+TGG | - | chr7_1:45858410-45858429 | Msa1021460:intron | 35.0% | |
TGAAAGTGAAGATGATGATC+CGG | - | chr7_1:45858558-45858577 | Msa1021460:intron | 35.0% | |
!! | TAGTTGGTGTAGAAGGTATT+TGG | + | chr7_1:45858739-45858758 | None:intergenic | 35.0% |
TTAAGTTAGAGTTGAAAGGG+TGG | + | chr7_1:45858768-45858787 | None:intergenic | 35.0% | |
! | GGGTTTAAGTTAGAGTTGAA+AGG | + | chr7_1:45858772-45858791 | None:intergenic | 35.0% |
GGGAGAGATTCAGTGAAAAT+GGG | + | chr7_1:45854704-45854723 | None:intergenic | 40.0% | |
TGGGAGAGATTCAGTGAAAA+TGG | + | chr7_1:45854705-45854724 | None:intergenic | 40.0% | |
TCTCTCCCATCTTCATCATA+AGG | - | chr7_1:45854716-45854735 | Msa1021460:CDS | 40.0% | |
CATGCACCTTATGATGAAGA+TGG | + | chr7_1:45854725-45854744 | None:intergenic | 40.0% | |
!! | GCATGTTTGGCTTTGACATA+AGG | + | chr7_1:45854898-45854917 | None:intergenic | 40.0% |
!!! | GCTTATATTTTGGTACGGAG+AGG | - | chr7_1:45855296-45855315 | Msa1021460:intron | 40.0% |
!! | TTTTGGAAGGCAATCAATGC+TGG | - | chr7_1:45855625-45855644 | Msa1021460:CDS | 40.0% |
AATCAATGCTGGAGACAAAG+TGG | - | chr7_1:45855636-45855655 | Msa1021460:CDS | 40.0% | |
CAAAGTGGATAGTGCTCTAA+AGG | - | chr7_1:45855651-45855670 | Msa1021460:CDS | 40.0% | |
!! | GGATAGTGCTCTAAAGGATA+TGG | - | chr7_1:45855657-45855676 | Msa1021460:CDS | 40.0% |
ACCTTGTATGACATGACACA+TGG | - | chr7_1:45856030-45856049 | Msa1021460:intron | 40.0% | |
CATGACACATGGCTAAAACT+CGG | - | chr7_1:45856041-45856060 | Msa1021460:intron | 40.0% | |
AAGACTTATCTACCAAGGTG+AGG | - | chr7_1:45856188-45856207 | Msa1021460:intron | 40.0% | |
CTTTGTCGTCCTTCCATTAA+AGG | + | chr7_1:45856214-45856233 | None:intergenic | 40.0% | |
GCAAGAAACAGCAAGACTAT+TGG | - | chr7_1:45856275-45856294 | Msa1021460:intron | 40.0% | |
GCCTAACCAAGTATTTCTCT+TGG | + | chr7_1:45856368-45856387 | None:intergenic | 40.0% | |
TGTGTGAGAAAGTCTTCTGT+AGG | + | chr7_1:45856549-45856568 | None:intergenic | 40.0% | |
! | ATTCGTACATGGACTAAAGC+AGG | + | chr7_1:45856781-45856800 | None:intergenic | 40.0% |
GGCTACAAGCAAAAACAAAG+TGG | - | chr7_1:45857243-45857262 | Msa1021460:CDS | 40.0% | |
CAAACCAAAATTCTTGGTCC+TGG | + | chr7_1:45857519-45857538 | None:intergenic | 40.0% | |
!!! | CAGGACCAAGAATTTTGGTT+TGG | - | chr7_1:45857410-45857429 | Msa1021460:intron | 40.0% |
! | TGGACAAGGACCAAGAATTT+TGG | + | chr7_1:45857526-45857545 | None:intergenic | 40.0% |
GAGAAAATCTTGTGTGGACA+AGG | + | chr7_1:45857540-45857559 | None:intergenic | 40.0% | |
TTGTTTAGGGAAACTTGGGT+TGG | - | chr7_1:45857597-45857616 | Msa1021460:intron | 40.0% | |
TGTTTAGGGAAACTTGGGTT+GGG | - | chr7_1:45857598-45857617 | Msa1021460:intron | 40.0% | |
! | GGCTAAATTCAAAGCCTTGT+TGG | + | chr7_1:45857696-45857715 | None:intergenic | 40.0% |
GACTTGATTTCATCAGAACC+TGG | + | chr7_1:45857791-45857810 | None:intergenic | 40.0% | |
! | AAACTTAGGTTGTGGCAAGT+TGG | + | chr7_1:45857852-45857871 | None:intergenic | 40.0% |
CTTGCCACAACCTAAGTTTA+TGG | - | chr7_1:45857853-45857872 | Msa1021460:CDS | 40.0% | |
GGAAGTCTTCTTGATCTAGT+TGG | + | chr7_1:45857941-45857960 | None:intergenic | 40.0% | |
AAGAAGACTTCCCATCTTTG+AGG | - | chr7_1:45857949-45857968 | Msa1021460:intron | 40.0% | |
! | CATTGTCACAAGTTTGCTCA+AGG | - | chr7_1:45858321-45858340 | Msa1021460:intron | 40.0% |
!! | TACTGCACTTGGTGTAAGTT+TGG | - | chr7_1:45858421-45858440 | Msa1021460:intron | 40.0% |
! | GATCATGTTTGTGTTTCTGC+TGG | - | chr7_1:45858457-45858476 | Msa1021460:intron | 40.0% |
!! | TGTTTCTGCTGGTGAGATTT+TGG | - | chr7_1:45858468-45858487 | Msa1021460:intron | 40.0% |
!!! | TGGTGAGATTTTGGTTGATG+AGG | - | chr7_1:45858477-45858496 | Msa1021460:intron | 40.0% |
AAACATACGCATCTCAGCTA+TGG | + | chr7_1:45858623-45858642 | None:intergenic | 40.0% | |
AGCTGAGATGCGTATGTTTA+TGG | - | chr7_1:45858624-45858643 | Msa1021460:CDS | 40.0% | |
!! | GTAGAAGGTATTTGGTGACA+TGG | + | chr7_1:45858731-45858750 | None:intergenic | 40.0% |
TGTCAAAGCCAAACATGCTC+AGG | - | chr7_1:45854900-45854919 | Msa1021460:CDS | 45.0% | |
AAAGCCAAACATGCTCAGGT+AGG | - | chr7_1:45854904-45854923 | Msa1021460:CDS | 45.0% | |
AGTACCTACCTGAGCATGTT+TGG | + | chr7_1:45854911-45854930 | None:intergenic | 45.0% | |
GCCATGTGTCATGTCATACA+AGG | + | chr7_1:45856034-45856053 | None:intergenic | 45.0% | |
TACCAAGGTGAGGCCTTTAA+TGG | - | chr7_1:45856198-45856217 | Msa1021460:intron | 45.0% | |
TTCCATTAAAGGCCTCACCT+TGG | + | chr7_1:45856203-45856222 | None:intergenic | 45.0% | |
AAGGTGAGGCCTTTAATGGA+AGG | - | chr7_1:45856202-45856221 | Msa1021460:intron | 45.0% | |
GCAAAGCAGGTATATTTGCG+AGG | - | chr7_1:45857047-45857066 | Msa1021460:intron | 45.0% | |
! | TGGACCAGGACCAAGAATTT+TGG | - | chr7_1:45857405-45857424 | Msa1021460:intron | 45.0% |
GAGAGAAGAGAAGAGAGAGA+AGG | - | chr7_1:45857476-45857495 | Msa1021460:intron | 45.0% | |
GACAAACTACATGATGGCTG+AGG | - | chr7_1:45857634-45857653 | Msa1021460:intron | 45.0% | |
AAACTACATGATGGCTGAGG+TGG | - | chr7_1:45857637-45857656 | Msa1021460:intron | 45.0% | |
GATAGATGCTGATGCCAACA+AGG | - | chr7_1:45857679-45857698 | Msa1021460:intron | 45.0% | |
! | GTTTTGCAAGGAAAGCTTCC+AGG | - | chr7_1:45857770-45857789 | Msa1021460:CDS | 45.0% |
CTCCCTATACTCACGAATCT+TGG | + | chr7_1:45858236-45858255 | None:intergenic | 45.0% | |
!! | TGAGAAGTGCTGAATTCCCA+AGG | - | chr7_1:45858292-45858311 | Msa1021460:intron | 45.0% |
TGCTCAAGGGACAATCTGAT+AGG | - | chr7_1:45858335-45858354 | Msa1021460:intron | 45.0% | |
AAGGGACAATCTGATAGGAG+TGG | - | chr7_1:45858340-45858359 | Msa1021460:intron | 45.0% | |
!! | GCACTTGGTGTAAGTTTGGA+TGG | - | chr7_1:45858425-45858444 | Msa1021460:intron | 45.0% |
!!! | GATTTTGGTTGATGAGGTGC+AGG | - | chr7_1:45858483-45858502 | Msa1021460:intron | 45.0% |
! | GCAGGTGATGATGAAGTGAT+TGG | - | chr7_1:45858529-45858548 | Msa1021460:intron | 45.0% |
AGTACGACTTGCAAGCCAAT+CGG | + | chr7_1:45858595-45858614 | None:intergenic | 45.0% | |
! | GTCTGGATAGTTGGTGTAGA+AGG | + | chr7_1:45858746-45858765 | None:intergenic | 45.0% |
TTAGAGTTGAAAGGGTGGTC+TGG | + | chr7_1:45858763-45858782 | None:intergenic | 45.0% | |
!!! | ATTAAAAACATATTTTTATA+AGG | - | chr7_1:45857076-45857095 | Msa1021460:intron | 5.0% |
GTGCATGTGCCCTGAAAAAG+AGG | - | chr7_1:45854738-45854757 | Msa1021460:CDS | 50.0% | |
ACAAAGACTGCTCGCTCTCA+TGG | - | chr7_1:45856228-45856247 | Msa1021460:intron | 50.0% | |
GAGAAACACTTGTGTGGACC+AGG | - | chr7_1:45857391-45857410 | Msa1021460:intron | 50.0% | |
!! | ATGGATGAGGGTGTTGTTGC+AGG | - | chr7_1:45858511-45858530 | Msa1021460:intron | 50.0% |
! | GGAGAGCATGTTTGATGCTC+AGG | - | chr7_1:45858645-45858664 | Msa1021460:CDS | 50.0% |
TGTTTGATGCTCAGGATGCG+AGG | - | chr7_1:45858653-45858672 | Msa1021460:CDS | 50.0% | |
GAAAGGGTGGTCTGGATAGT+TGG | + | chr7_1:45858755-45858774 | None:intergenic | 50.0% | |
TGATGAGGTGCAGGCTGCAA+TGG | - | chr7_1:45858492-45858511 | Msa1021460:intron | 55.0% | |
GTGCAGGCTGCAATGGATGA+GGG | - | chr7_1:45858499-45858518 | Msa1021460:intron | 55.0% | |
CCAATCGGAGGAGCAGAATC+CGG | + | chr7_1:45858580-45858599 | None:intergenic | 55.0% | |
ACGACTTGCAAGCCAATCGG+AGG | + | chr7_1:45858592-45858611 | None:intergenic | 55.0% | |
GGTGCAGGCTGCAATGGATG+AGG | - | chr7_1:45858498-45858517 | Msa1021460:intron | 60.0% | |
CCGGATTCTGCTCCTCCGAT+TGG | - | chr7_1:45858577-45858596 | Msa1021460:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_1 | gene | 45854701 | 45858828 | 45854701 | ID=Msa1021460;Name=Msa1021460 |
chr7_1 | mRNA | 45854701 | 45858828 | 45854701 | ID=Msa1021460-mRNA-1;Parent=Msa1021460;Name=Msa1021460-mRNA-1;_AED=0.20;_eAED=0.20;_QI=104|0.75|0.6|1|1|1|5|0|418 |
chr7_1 | exon | 45854701 | 45855078 | 45854701 | ID=Msa1021460-mRNA-1:exon:9080;Parent=Msa1021460-mRNA-1 |
chr7_1 | exon | 45855532 | 45855924 | 45855532 | ID=Msa1021460-mRNA-1:exon:9079;Parent=Msa1021460-mRNA-1 |
chr7_1 | exon | 45857233 | 45857388 | 45857233 | ID=Msa1021460-mRNA-1:exon:9078;Parent=Msa1021460-mRNA-1 |
chr7_1 | exon | 45857728 | 45857940 | 45857728 | ID=Msa1021460-mRNA-1:exon:9077;Parent=Msa1021460-mRNA-1 |
chr7_1 | exon | 45858608 | 45858828 | 45858608 | ID=Msa1021460-mRNA-1:exon:9076;Parent=Msa1021460-mRNA-1 |
chr7_1 | five_prime_UTR | 45858725 | 45858828 | 45858725 | ID=Msa1021460-mRNA-1:five_prime_utr;Parent=Msa1021460-mRNA-1 |
chr7_1 | CDS | 45858608 | 45858724 | 45858608 | ID=Msa1021460-mRNA-1:cds;Parent=Msa1021460-mRNA-1 |
chr7_1 | CDS | 45857728 | 45857940 | 45857728 | ID=Msa1021460-mRNA-1:cds;Parent=Msa1021460-mRNA-1 |
chr7_1 | CDS | 45857233 | 45857388 | 45857233 | ID=Msa1021460-mRNA-1:cds;Parent=Msa1021460-mRNA-1 |
chr7_1 | CDS | 45855532 | 45855924 | 45855532 | ID=Msa1021460-mRNA-1:cds;Parent=Msa1021460-mRNA-1 |
chr7_1 | CDS | 45854701 | 45855078 | 45854701 | ID=Msa1021460-mRNA-1:cds;Parent=Msa1021460-mRNA-1 |
Gene Sequence |
Protein sequence |