Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1060220 | KEH22820.1 | 99.322 | 295 | 2 | 0 | 1 | 295 | 1 | 295 | 0.0 | 605 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1060220 | sp|Q8GXU5|SDI1_ARATH | 65.068 | 292 | 95 | 3 | 9 | 295 | 17 | 306 | 3.57e-133 | 382 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1060220 | A0A072UAH2 | 99.322 | 295 | 2 | 0 | 1 | 295 | 1 | 295 | 0.0 | 605 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014800 | Msa1060220 | 0.818687 | 1.721550e-52 | -8.615850e-47 |
| Msa0015300 | Msa1060220 | 0.816024 | 6.841886e-52 | -8.615850e-47 |
| Msa0047980 | Msa1060220 | 0.818035 | 2.418506e-52 | -8.615850e-47 |
| Msa0050730 | Msa1060220 | 0.803756 | 2.995103e-49 | -8.615850e-47 |
| Msa0050760 | Msa1060220 | 0.817347 | 3.456546e-52 | -8.615850e-47 |
| Msa0064350 | Msa1060220 | 0.813933 | 1.991657e-51 | -8.615850e-47 |
| Msa0069330 | Msa1060220 | 0.801165 | 1.024286e-48 | -8.615850e-47 |
| Msa0089360 | Msa1060220 | 0.819899 | 9.114788e-53 | -8.615850e-47 |
| Msa0092990 | Msa1060220 | 0.813313 | 2.726794e-51 | -8.615850e-47 |
| Msa0104550 | Msa1060220 | 0.800330 | 1.515963e-48 | -8.615850e-47 |
| Msa0108560 | Msa1060220 | 0.814130 | 1.801608e-51 | -8.615850e-47 |
| Msa0120340 | Msa1060220 | 0.800503 | 1.398031e-48 | -8.615850e-47 |
| Msa0623860 | Msa1060220 | 0.810452 | 1.144824e-50 | -8.615850e-47 |
| Msa0650190 | Msa1060220 | 0.811795 | 5.855605e-51 | -8.615850e-47 |
| Msa0680240 | Msa1060220 | 0.806496 | 7.997212e-50 | -8.615850e-47 |
| Msa0684500 | Msa1060220 | 0.801324 | 9.500358e-49 | -8.615850e-47 |
| Msa0687630 | Msa1060220 | 0.800665 | 1.295298e-48 | -8.615850e-47 |
| Msa0692110 | Msa1060220 | 0.825341 | 4.941790e-54 | -8.615850e-47 |
| Msa0692840 | Msa1060220 | 0.812348 | 4.435362e-51 | -8.615850e-47 |
| Msa0713820 | Msa1060220 | 0.830513 | 2.815852e-55 | -8.615850e-47 |
| Msa0722020 | Msa1060220 | 0.807784 | 4.267692e-50 | -8.615850e-47 |
| Msa0727150 | Msa1060220 | 0.817029 | 4.076408e-52 | -8.615850e-47 |
| Msa0738840 | Msa1060220 | 0.815550 | 8.731059e-52 | -8.615850e-47 |
| Msa0738850 | Msa1060220 | 0.802040 | 6.774855e-49 | -8.615850e-47 |
| Msa0752510 | Msa1060220 | 0.810384 | 1.183732e-50 | -8.615850e-47 |
| Msa0756060 | Msa1060220 | 0.836132 | 1.119416e-56 | -8.615850e-47 |
| Msa0761940 | Msa1060220 | 0.818486 | 1.911180e-52 | -8.615850e-47 |
| Msa0771720 | Msa1060220 | 0.820440 | 6.851006e-53 | -8.615850e-47 |
| Msa0790660 | Msa1060220 | -0.804806 | 1.810414e-49 | -8.615850e-47 |
| Msa0801110 | Msa1060220 | 0.833787 | 4.363469e-56 | -8.615850e-47 |
| Msa0833310 | Msa1060220 | 0.801714 | 7.905448e-49 | -8.615850e-47 |
| Msa0835280 | Msa1060220 | 0.805978 | 1.028304e-49 | -8.615850e-47 |
| Msa0835730 | Msa1060220 | 0.805904 | 1.065493e-49 | -8.615850e-47 |
| Msa0841940 | Msa1060220 | 0.800164 | 1.638492e-48 | -8.615850e-47 |
| Msa0140300 | Msa1060220 | 0.817530 | 3.144129e-52 | -8.615850e-47 |
| Msa0143080 | Msa1060220 | 0.824046 | 9.978123e-54 | -8.615850e-47 |
| Msa0148100 | Msa1060220 | 0.818546 | 1.852275e-52 | -8.615850e-47 |
| Msa0157100 | Msa1060220 | 0.811905 | 5.541071e-51 | -8.615850e-47 |
| Msa0194480 | Msa1060220 | 0.802820 | 4.679940e-49 | -8.615850e-47 |
| Msa0231980 | Msa1060220 | 0.802620 | 5.146826e-49 | -8.615850e-47 |
| Msa0236980 | Msa1060220 | 0.822790 | 1.961968e-53 | -8.615850e-47 |
| Msa0402820 | Msa1060220 | 0.800581 | 1.347694e-48 | -8.615850e-47 |
| Msa0425400 | Msa1060220 | 0.817581 | 3.062503e-52 | -8.615850e-47 |
| Msa0426330 | Msa1060220 | 0.815400 | 9.427059e-52 | -8.615850e-47 |
| Msa0430780 | Msa1060220 | 0.816167 | 6.356723e-52 | -8.615850e-47 |
| Msa0432070 | Msa1060220 | 0.813392 | 2.619390e-51 | -8.615850e-47 |
| Msa0449830 | Msa1060220 | 0.837203 | 5.969456e-57 | -8.615850e-47 |
| Msa0453520 | Msa1060220 | 0.818537 | 1.861311e-52 | -8.615850e-47 |
| Msa0453680 | Msa1060220 | 0.835045 | 2.108248e-56 | -8.615850e-47 |
| Msa0469850 | Msa1060220 | 0.815662 | 8.241348e-52 | -8.615850e-47 |
| Msa0999040 | Msa1060220 | 0.804363 | 2.238784e-49 | -8.615850e-47 |
| Msa1012430 | Msa1060220 | 0.803404 | 3.542978e-49 | -8.615850e-47 |
| Msa1021460 | Msa1060220 | 0.887252 | 1.679375e-72 | -8.615850e-47 |
| Msa1039880 | Msa1060220 | 0.808125 | 3.612215e-50 | -8.615850e-47 |
| Msa1060220 | Msa1091560 | 0.806422 | 8.290035e-50 | -8.615850e-47 |
| Msa1060220 | Msa1100720 | 0.815029 | 1.139382e-51 | -8.615850e-47 |
| Msa1060220 | Msa1105470 | 0.888627 | 4.992561e-73 | -8.615850e-47 |
| Msa1060220 | Msa1116690 | 0.833919 | 4.043875e-56 | -8.615850e-47 |
| Msa1060220 | Msa1126770 | 0.806392 | 8.411820e-50 | -8.615850e-47 |
| Msa1060220 | Msa1134110 | 0.806474 | 8.081326e-50 | -8.615850e-47 |
| Msa1060220 | Msa1148900 | 0.850134 | 2.066454e-60 | -8.615850e-47 |
| Msa1060220 | Msa1151710 | 0.811336 | 7.367920e-51 | -8.615850e-47 |
| Msa1060220 | Msa1172670 | 0.816914 | 4.324905e-52 | -8.615850e-47 |
| Msa1060220 | Msa1175330 | 0.805533 | 1.275013e-49 | -8.615850e-47 |
| Msa1060220 | Msa1179460 | 0.816006 | 6.906470e-52 | -8.615850e-47 |
| Msa1060220 | Msa1201120 | 0.836510 | 8.972237e-57 | -8.615850e-47 |
| Msa1060220 | Msa1204250 | 0.804085 | 2.558685e-49 | -8.615850e-47 |
| Msa1060220 | Msa1227220 | 0.800110 | 1.680465e-48 | -8.615850e-47 |
| Msa1060220 | Msa1255190 | 0.819405 | 1.181434e-52 | -8.615850e-47 |
| Msa1060220 | Msa1267260 | 0.802449 | 5.581597e-49 | -8.615850e-47 |
| Msa1060220 | Msa1279650 | 0.801881 | 7.304645e-49 | -8.615850e-47 |
| Msa1060220 | Msa1290190 | 0.805840 | 1.098930e-49 | -8.615850e-47 |
| Msa1060220 | Msa1295630 | 0.822705 | 2.052768e-53 | -8.615850e-47 |
| Msa1060220 | Msa1315870 | 0.801434 | 9.021844e-49 | -8.615850e-47 |
| Msa1060220 | Msa1333110 | 0.802386 | 5.749863e-49 | -8.615850e-47 |
| Msa1060220 | Msa1348950 | 0.824809 | 6.600202e-54 | -8.615850e-47 |
| Msa1060220 | Msa1353470 | 0.806149 | 9.464878e-50 | -8.615850e-47 |
| Msa1060220 | Msa1382410 | 0.809846 | 1.546050e-50 | -8.615850e-47 |
| Msa1060220 | Msa1393740 | 0.801873 | 7.331147e-49 | -8.615850e-47 |
| Msa1060220 | Msa1402590 | 0.805677 | 1.189507e-49 | -8.615850e-47 |
| Msa1060220 | Msa1404190 | 0.806628 | 7.500562e-50 | -8.615850e-47 |
| Msa1060220 | Msa1407600 | 0.813074 | 3.076010e-51 | -8.615850e-47 |
| Msa1060220 | Msa1440600 | 0.815586 | 8.571342e-52 | -8.615850e-47 |
| Msa1060220 | Msa1448510 | 0.805379 | 1.373311e-49 | -8.615850e-47 |
| Msa0241800 | Msa1060220 | 0.802454 | 5.568113e-49 | -8.615850e-47 |
| Msa0269450 | Msa1060220 | 0.803738 | 3.020759e-49 | -8.615850e-47 |
| Msa0281360 | Msa1060220 | 0.833125 | 6.383267e-56 | -8.615850e-47 |
| Msa0311700 | Msa1060220 | 0.830513 | 2.815852e-55 | -8.615850e-47 |
| Msa0328210 | Msa1060220 | 0.815688 | 8.134300e-52 | -8.615850e-47 |
| Msa0356960 | Msa1060220 | 0.814530 | 1.469852e-51 | -8.615850e-47 |
| Msa0485420 | Msa1060220 | 0.804298 | 2.310082e-49 | -8.615850e-47 |
| Msa0497420 | Msa1060220 | 0.816174 | 6.334969e-52 | -8.615850e-47 |
| Msa0551950 | Msa1060220 | 0.809122 | 2.211613e-50 | -8.615850e-47 |
| Msa0552810 | Msa1060220 | 0.814881 | 1.229096e-51 | -8.615850e-47 |
| Msa0585900 | Msa1060220 | 0.803364 | 3.611908e-49 | -8.615850e-47 |
| Msa0842830 | Msa1060220 | 0.804069 | 2.577936e-49 | -8.615850e-47 |
| Msa0863870 | Msa1060220 | 0.808254 | 3.390325e-50 | -8.615850e-47 |
| Msa0874500 | Msa1060220 | 0.814774 | 1.298038e-51 | -8.615850e-47 |
| Msa0877410 | Msa1060220 | 0.840354 | 9.144323e-58 | -8.615850e-47 |
| Msa0882510 | Msa1060220 | 0.808624 | 2.826766e-50 | -8.615850e-47 |
| Msa0896220 | Msa1060220 | 0.802129 | 6.496485e-49 | -8.615850e-47 |
| Msa0899230 | Msa1060220 | 0.811360 | 7.280782e-51 | -8.615850e-47 |
| Msa0927670 | Msa1060220 | 0.824688 | 7.049159e-54 | -8.615850e-47 |
| Msa0936340 | Msa1060220 | 0.809398 | 1.929896e-50 | -8.615850e-47 |
| Msa0960160 | Msa1060220 | 0.822980 | 1.771689e-53 | -8.615850e-47 |
| Msa0974530 | Msa1060220 | 0.819535 | 1.103437e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1060220 | MtrunA17_Chr7g0237621 | 99.322 | 295 | 2 | 0 | 1 | 295 | 18 | 312 | 0.0 | 605 |
| Msa1060220 | MtrunA17_Chr7g0237581 | 76.491 | 285 | 67 | 0 | 11 | 295 | 16 | 300 | 8.52e-167 | 464 |
| Msa1060220 | MtrunA17_Chr8g0371521 | 53.731 | 268 | 111 | 3 | 15 | 274 | 32 | 294 | 1.99e-94 | 287 |
| Msa1060220 | MtrunA17_Chr2g0292681 | 54.286 | 245 | 109 | 1 | 15 | 256 | 47 | 291 | 1.61e-85 | 268 |
| Msa1060220 | MtrunA17_Chr2g0292671 | 45.342 | 161 | 85 | 1 | 88 | 245 | 2 | 162 | 7.81e-43 | 145 |
| Msa1060220 | MtrunA17_Chr2g0292661 | 71.667 | 60 | 17 | 0 | 15 | 74 | 44 | 103 | 2.45e-24 | 94.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1060220 | AT5G48850.1 | 65.068 | 292 | 95 | 3 | 9 | 295 | 17 | 306 | 3.63e-134 | 382 |
| Msa1060220 | AT1G04770.1 | 58.885 | 287 | 105 | 5 | 19 | 295 | 20 | 303 | 1.45e-115 | 335 |
| Msa1060220 | AT3G51280.1 | 55.385 | 260 | 111 | 2 | 19 | 274 | 30 | 288 | 1.51e-93 | 283 |
| Msa1060220 | AT4G20900.2 | 53.469 | 245 | 106 | 2 | 10 | 248 | 42 | 284 | 2.74e-84 | 260 |
| Msa1060220 | AT4G20900.1 | 50.192 | 261 | 106 | 3 | 10 | 248 | 42 | 300 | 4.61e-80 | 249 |
| Msa1060220 | AT5G44330.1 | 52.489 | 221 | 102 | 1 | 24 | 241 | 49 | 269 | 8.76e-68 | 218 |
| Msa1060220 | AT5G22794.2 | 65.672 | 67 | 23 | 0 | 96 | 162 | 71 | 137 | 5.50e-23 | 95.1 |
| Msa1060220 | AT5G22794.1 | 56.716 | 67 | 22 | 1 | 96 | 162 | 71 | 130 | 2.56e-16 | 76.3 |
Find 85 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGCCACAACCCAAGTTTA+TGG | 0.135699 | 7_2:-47929067 | Msa1060220:CDS |
| CAATTCTTCAGCTCTATTTC+TGG | 0.147773 | 7_2:+47929110 | None:intergenic |
| CCCAAGTTTATGGATGATTT+AGG | 0.147863 | 7_2:-47929057 | Msa1060220:CDS |
| CTTTGTCGTCCTTCCATTAA+AGG | 0.194578 | 7_2:+47930295 | None:intergenic |
| GAATAAGGTTTGCTTGTATT+TGG | 0.226997 | 7_2:-47928784 | Msa1060220:three_prime_UTR |
| TGGGAGAGATTCAGTGAAAA+TGG | 0.247645 | 7_2:+47931770 | None:intergenic |
| GCAAGAAACTGCAAGATTAT+TGG | 0.253847 | 7_2:-47930231 | Msa1060220:intron |
| TTCCATGATTCTTGAGTATA+GGG | 0.263541 | 7_2:-47928710 | Msa1060220:three_prime_UTR |
| CCAAGTTTATGGATGATTTA+GGG | 0.265402 | 7_2:-47929056 | Msa1060220:CDS |
| GTATATATTGTCTTCGGTCT+AGG | 0.280957 | 7_2:-47928890 | Msa1060220:three_prime_UTR |
| AAACTTGGGTTGTGGCAAAT+TGG | 0.290156 | 7_2:+47929071 | None:intergenic |
| GTGCATGTGCCCTGAATAAA+AGG | 0.304100 | 7_2:-47931734 | Msa1060220:five_prime_UTR |
| GTTATTCATAAGGTTCCTTA+TGG | 0.304411 | 7_2:-47931603 | Msa1060220:CDS |
| TACCAAGGTGAGGCCTTTAA+TGG | 0.310819 | 7_2:-47930308 | Msa1060220:CDS |
| AACTTGTTCAAGAATTAAAT+AGG | 0.323980 | 7_2:+47929170 | None:intergenic |
| CCCTAAATCATCCATAAACT+TGG | 0.330135 | 7_2:+47929056 | None:intergenic |
| AAGTAGCTATAGTGTACTTT+TGG | 0.340103 | 7_2:-47930906 | Msa1060220:CDS |
| TTGATGGATTACTTAATGTT+TGG | 0.342938 | 7_2:-47929008 | Msa1060220:CDS |
| AGTACCTACCTGAGCATGTT+TGG | 0.360029 | 7_2:+47931560 | None:intergenic |
| AAGAACATTGACAAGTTTCC+AGG | 0.366399 | 7_2:+47928736 | None:intergenic |
| TTTCCATGATTCTTGAGTAT+AGG | 0.369760 | 7_2:-47928711 | Msa1060220:three_prime_UTR |
| GGGAGAGATTCAGTGAAAAT+GGG | 0.383949 | 7_2:+47931771 | None:intergenic |
| AAGTACACTATAGCTACTTC+TGG | 0.384228 | 7_2:+47930910 | None:intergenic |
| ATGTGACAATGTTTATTCCT+TGG | 0.396558 | 7_2:+47928632 | None:intergenic |
| TCTCAAATAAAACGACAATA+AGG | 0.397788 | 7_2:+47928667 | None:intergenic |
| TGTGACAATGTTTATTCCTT+GGG | 0.399770 | 7_2:+47928633 | None:intergenic |
| GCATGTTTGGCTTTGACATA+AGG | 0.405107 | 7_2:+47931573 | None:intergenic |
| TCTCTATCATGTTATTCATA+AGG | 0.406833 | 7_2:-47931613 | Msa1060220:CDS |
| AGAAGATATTTCCTCAAAGA+TGG | 0.410475 | 7_2:+47928960 | None:intergenic |
| ATTGATTGTTTAGGGAAACT+TGG | 0.412436 | 7_2:-47929328 | Msa1060220:intron |
| CATAACGAGATTGTCTCATT+AGG | 0.414447 | 7_2:+47929199 | None:intergenic |
| TGTTTAGGGAAACTTGGGTT+GGG | 0.416088 | 7_2:-47929322 | Msa1060220:intron |
| ATCCATCAATTCCTTTCAAA+AGG | 0.416312 | 7_2:+47929022 | None:intergenic |
| TATGTTGTATATATTGTCTT+CGG | 0.418615 | 7_2:-47928896 | Msa1060220:three_prime_UTR |
| AAGAAGACTTCCCATCTTTG+AGG | 0.419105 | 7_2:-47928971 | Msa1060220:CDS |
| ATTGTCTTCGGTCTAGGGTT+GGG | 0.423731 | 7_2:-47928884 | Msa1060220:three_prime_UTR |
| GGAAGTCTTCTTGATCTAGT+TGG | 0.437256 | 7_2:+47928982 | None:intergenic |
| GGCTAAATTCAAAGCCTTGT+TGG | 0.440956 | 7_2:+47929227 | None:intergenic |
| AAAAGGAGAAACAGAAAGGA+AGG | 0.444369 | 7_2:-47931717 | Msa1060220:five_prime_UTR |
| GGATAGTGCTCTGAAGGATA+TGG | 0.444564 | 7_2:-47930857 | Msa1060220:CDS |
| TATATATTGTCTTCGGTCTA+GGG | 0.458233 | 7_2:-47928889 | Msa1060220:three_prime_UTR |
| TCTCTCCCATCTTCATCATA+AGG | 0.470766 | 7_2:-47931756 | Msa1060220:five_prime_UTR |
| TATTGTCTTCGGTCTAGGGT+TGG | 0.472635 | 7_2:-47928885 | Msa1060220:three_prime_UTR |
| CTCCCTATACTCAAGAATCA+TGG | 0.476951 | 7_2:+47928708 | None:intergenic |
| GTGACATATACAGAGAGAAA+TGG | 0.484017 | 7_2:-47931682 | Msa1060220:exon |
| TTTCTTGCTTGATAGAAACT+TGG | 0.484181 | 7_2:+47930246 | None:intergenic |
| AGATTGTCTCATTAGGCATA+AGG | 0.484330 | 7_2:+47929206 | None:intergenic |
| GCAAAGGAAGAATACGAAAT+CGG | 0.488307 | 7_2:+47928841 | None:intergenic |
| TGTCAAAGCCAAACATGCTC+AGG | 0.496739 | 7_2:-47931568 | Msa1060220:intron |
| ATGATGAATAATCGCAGTCC+TGG | 0.499327 | 7_2:-47928754 | Msa1060220:three_prime_UTR |
| CATGCACCTTATGATGAAGA+TGG | 0.506907 | 7_2:+47931750 | None:intergenic |
| AATGAGACAATCTCGTTATG+AGG | 0.514397 | 7_2:-47929196 | Msa1060220:CDS |
| TTGTTTAGGGAAACTTGGGT+TGG | 0.515491 | 7_2:-47929323 | Msa1060220:intron |
| CAAAGTGGATAGTGCTCTGA+AGG | 0.516309 | 7_2:-47930863 | Msa1060220:CDS |
| TACGAAATCGGAGAAGAGAA+TGG | 0.521339 | 7_2:+47928853 | None:intergenic |
| ACAAAGACTGCTCGTTCTCA+TGG | 0.523879 | 7_2:-47930278 | Msa1060220:CDS |
| CATTGTCACATGTTTGCTCA+AGG | 0.533612 | 7_2:-47928620 | Msa1060220:three_prime_UTR |
| TCAGAAATGTGGAAGAATAG+AGG | 0.535352 | 7_2:-47930369 | Msa1060220:intron |
| GAAGATATTTCCTCAAAGAT+GGG | 0.535613 | 7_2:+47928961 | None:intergenic |
| TGTACTTCTTGATCTTTACA+AGG | 0.536497 | 7_2:-47930734 | Msa1060220:intron |
| TGAGAAGTGTTGAATTCCCA+AGG | 0.538323 | 7_2:-47928649 | Msa1060220:three_prime_UTR |
| GTCTTGAAGAAAAGTTCTAA+AGG | 0.542212 | 7_2:-47931648 | Msa1060220:CDS |
| GACTTGATTTCATCAGAACC+TGG | 0.545316 | 7_2:+47929132 | None:intergenic |
| TTGATTGTTTAGGGAAACTT+GGG | 0.545737 | 7_2:-47929327 | Msa1060220:intron |
| AATTATTGAAAAGAAAGCTA+AGG | 0.545780 | 7_2:-47930337 | Msa1060220:CDS |
| GGAGAGATTCAGTGAAAATG+GGG | 0.548864 | 7_2:+47931772 | None:intergenic |
| ACATAAGGAGTATCACCATA+AGG | 0.554287 | 7_2:+47931588 | None:intergenic |
| TCATCCATAAACTTGGGTTG+TGG | 0.557350 | 7_2:+47929063 | None:intergenic |
| CCTAAATCATCCATAAACTT+GGG | 0.566322 | 7_2:+47929057 | None:intergenic |
| ATGCACCTTATGATGAAGAT+GGG | 0.587704 | 7_2:+47931751 | None:intergenic |
| GAATAAAAGGAGAAACAGAA+AGG | 0.593872 | 7_2:-47931721 | Msa1060220:five_prime_UTR |
| AAACTACATGATGGCTGAGG+TGG | 0.597629 | 7_2:-47929283 | Msa1060220:CDS |
| GCAAAAGACAAACTACATGA+TGG | 0.600357 | 7_2:-47929292 | Msa1060220:CDS |
| ATTGTCACATGTTTGCTCAA+GGG | 0.605009 | 7_2:-47928619 | None:intergenic |
| AAAGGAGAAACAGAAAGGAA+GGG | 0.605094 | 7_2:-47931716 | Msa1060220:five_prime_UTR |
| TTCCATTAAAGGCCTCACCT+TGG | 0.605669 | 7_2:+47930306 | None:intergenic |
| GATAGATGCTGATGCCAACA+AGG | 0.611933 | 7_2:-47929241 | Msa1060220:CDS |
| AAGGTGAGGCCTTTAATGGA+AGG | 0.621345 | 7_2:-47930304 | Msa1060220:CDS |
| AAGCTAAGGCTTATCTACCA+AGG | 0.641867 | 7_2:-47930323 | Msa1060220:CDS |
| AATCAATGCTGGAGACAAAG+TGG | 0.650220 | 7_2:-47930878 | Msa1060220:CDS |
| CATATACAGAGAGAAATGGA+AGG | 0.651435 | 7_2:-47931678 | Msa1060220:exon |
| GACAAACTACATGATGGCTG+AGG | 0.652612 | 7_2:-47929286 | Msa1060220:CDS |
| AAGGCTTATCTACCAAGGTG+AGG | 0.670425 | 7_2:-47930318 | Msa1060220:CDS |
| AGAGATTCAGTGAAAATGGG+GGG | 0.681806 | 7_2:+47931774 | None:intergenic |
| GAGAGATTCAGTGAAAATGG+GGG | 0.712050 | 7_2:+47931773 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATTTTATTTTAAAATT+TGG | + | chr7_2:47930812-47930831 | None:intergenic | 0.0% |
| !!! | AATTTTAAAATAAAATAATA+TGG | - | chr7_2:47930812-47930831 | Msa1060220:CDS | 0.0% |
| !! | GATAATTTACTAATTATATA+GGG | + | chr7_2:47929755-47929774 | None:intergenic | 10.0% |
| !! | CTATATAATTAGTAAATTAT+CGG | - | chr7_2:47929754-47929773 | Msa1060220:intron | 10.0% |
| !! | AAATTTACTTATTTATGAAT+TGG | - | chr7_2:47930518-47930537 | Msa1060220:intron | 10.0% |
| !!! | ATCAAAAACATATTTTTATA+AGG | - | chr7_2:47930724-47930743 | Msa1060220:intron | 10.0% |
| !!! | ATGAATATTTTTTTTTATCA+AGG | - | chr7_2:47931021-47931040 | Msa1060220:intron | 10.0% |
| !! | ATTTAGAGATCAAATTAAAA+GGG | + | chr7_2:47928947-47928966 | None:intergenic | 15.0% |
| !! | AATTTAGAGATCAAATTAAA+AGG | + | chr7_2:47928948-47928967 | None:intergenic | 15.0% |
| !!! | TTCTACTTTTTTACATTATT+TGG | - | chr7_2:47929338-47929357 | Msa1060220:intron | 15.0% |
| !! | CGATAATTTACTAATTATAT+AGG | + | chr7_2:47929756-47929775 | None:intergenic | 15.0% |
| !! | TTACACAAAAACTAAAAATT+AGG | + | chr7_2:47930001-47930020 | None:intergenic | 15.0% |
| !! | AAAGTAAAAATATTTGTACA+AGG | + | chr7_2:47930436-47930455 | None:intergenic | 15.0% |
| !!! | ATAAATAAGTAAATTTTGCA+AGG | + | chr7_2:47930514-47930533 | None:intergenic | 15.0% |
| !! | AAAATCAAATACTCTATAAA+AGG | + | chr7_2:47930545-47930564 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTGATAAACCAA+TGG | - | chr7_2:47930663-47930682 | Msa1060220:intron | 15.0% |
| !!! | CAAATAAATATTTTTACAAG+AGG | - | chr7_2:47930870-47930889 | Msa1060220:CDS | 15.0% |
| !!! | ATTGTAGAAATGATTATTTT+TGG | - | chr7_2:47930986-47931005 | Msa1060220:intron | 15.0% |
| !!! | TTGTAGAAATGATTATTTTT+GGG | - | chr7_2:47930987-47931006 | Msa1060220:intron | 15.0% |
| !! | AAATGATACAAAAAGACAAT+TGG | + | chr7_2:47929182-47929201 | None:intergenic | 20.0% |
| !! | TAAGAAAGACCTTATATAAT+AGG | + | chr7_2:47929234-47929253 | None:intergenic | 20.0% |
| !! | AATTATTGAAAAGAAAGCTA+AGG | - | chr7_2:47930054-47930073 | Msa1060220:intron | 20.0% |
| !! | TATATTGTTCAAATATTACC+AGG | + | chr7_2:47930327-47930346 | None:intergenic | 20.0% |
| !! | CAAAATGTAGTATATTTACA+AGG | + | chr7_2:47930463-47930482 | None:intergenic | 20.0% |
| !!! | AAATTTGTTCTTATAGGAAT+TGG | + | chr7_2:47930624-47930643 | None:intergenic | 20.0% |
| !!! | AACTTGTTCAAGAATTAAAT+AGG | + | chr7_2:47931224-47931243 | None:intergenic | 20.0% |
| !! | TATGTTGTATATATTGTCTT+CGG | - | chr7_2:47931495-47931514 | Msa1060220:intron | 20.0% |
| ! | TCTCTATCATGTTATTCATA+AGG | - | chr7_2:47928778-47928797 | Msa1060220:three_prime_UTR | 25.0% |
| ! | CAAATTAAAAGGGATAAAGA+TGG | + | chr7_2:47928937-47928956 | None:intergenic | 25.0% |
| ! | ATGTTATATTGTTTCAGTTC+TGG | - | chr7_2:47928970-47928989 | Msa1060220:CDS | 25.0% |
| ! | CTCACTTTATAACAGAATAT+AGG | - | chr7_2:47929121-47929140 | Msa1060220:CDS | 25.0% |
| ! | TGTATAATGAAACACATGTT+TGG | + | chr7_2:47929688-47929707 | None:intergenic | 25.0% |
| ! | GATGTTCAATTATCATGTTA+TGG | - | chr7_2:47929717-47929736 | Msa1060220:intron | 25.0% |
| ! | AGATTTGATCAACAAAAACA+CGG | - | chr7_2:47929807-47929826 | Msa1060220:intron | 25.0% |
| ! | ACTGAACATGATATTGATAT+TGG | - | chr7_2:47929838-47929857 | Msa1060220:intron | 25.0% |
| ! | CACATCTTTCATATAAAATG+TGG | - | chr7_2:47929949-47929968 | Msa1060220:intron | 25.0% |
| !! | TTTTGTGTAAATCAGAAATG+TGG | - | chr7_2:47930011-47930030 | Msa1060220:intron | 25.0% |
| ! | AACTTGAATCAACATATGTT+TGG | + | chr7_2:47930250-47930269 | None:intergenic | 25.0% |
| ! | CTTGTATGATCTATATTGTA+GGG | + | chr7_2:47930359-47930378 | None:intergenic | 25.0% |
| !! | CATGCAAAATTTGTTCTTAT+AGG | + | chr7_2:47930630-47930649 | None:intergenic | 25.0% |
| !! | CTATAAGAACAAATTTTGCA+TGG | - | chr7_2:47930628-47930647 | Msa1060220:intron | 25.0% |
| !!! | GTTTTACTTTTGATTTCCAT+TGG | + | chr7_2:47930682-47930701 | None:intergenic | 25.0% |
| ! | ATGGAAATCAAAAGTAAAAC+AGG | - | chr7_2:47930682-47930701 | Msa1060220:intron | 25.0% |
| !!! | AATTTTTTTCTTCAACCCAA+TGG | - | chr7_2:47930938-47930957 | Msa1060220:intron | 25.0% |
| ! | TATTATGATGTGATACCATT+GGG | + | chr7_2:47930956-47930975 | None:intergenic | 25.0% |
| ! | ATATTATGATGTGATACCAT+TGG | + | chr7_2:47930957-47930976 | None:intergenic | 25.0% |
| !! | AACACATTGATTGATTGTTT+AGG | - | chr7_2:47931054-47931073 | Msa1060220:intron | 25.0% |
| !! | ACACATTGATTGATTGTTTA+GGG | - | chr7_2:47931055-47931074 | Msa1060220:intron | 25.0% |
| !!! | TTGATGGATTACTTAATGTT+TGG | - | chr7_2:47931383-47931402 | Msa1060220:intron | 25.0% |
| !!! | ATCTTCTTTTAGAGATCAAT+TGG | - | chr7_2:47931447-47931466 | Msa1060220:intron | 25.0% |
| !! | TATTTTTCCTCACCATTTTA+AGG | + | chr7_2:47931585-47931604 | None:intergenic | 25.0% |
| ! | GTGAGGAAAAATATAGAATA+AGG | - | chr7_2:47931592-47931611 | Msa1060220:CDS | 25.0% |
| ! | TCTCAAATAAAACGACAATA+AGG | + | chr7_2:47931727-47931746 | None:intergenic | 25.0% |
| !! | TCTGTTTCTCCTTTTATTCA+GGG | + | chr7_2:47928669-47928688 | None:intergenic | 30.0% |
| !! | TTCTGTTTCTCCTTTTATTC+AGG | + | chr7_2:47928670-47928689 | None:intergenic | 30.0% |
| GAATAAAAGGAGAAACAGAA+AGG | - | chr7_2:47928670-47928689 | Msa1060220:three_prime_UTR | 30.0% | |
| ! | GTCTTGAAGAAAAGTTCTAA+AGG | - | chr7_2:47928743-47928762 | Msa1060220:three_prime_UTR | 30.0% |
| GTTATTCATAAGGTTCCTTA+TGG | - | chr7_2:47928788-47928807 | Msa1060220:three_prime_UTR | 30.0% | |
| TTACTTTGTCACTACTGAAA+AGG | + | chr7_2:47929084-47929103 | None:intergenic | 30.0% | |
| AACAGAATATAGGCAGTAAA+AGG | - | chr7_2:47929131-47929150 | Msa1060220:CDS | 30.0% | |
| ATATAATAGGTGTAGTCTCT+GGG | + | chr7_2:47929221-47929240 | None:intergenic | 30.0% | |
| TATATAATAGGTGTAGTCTC+TGG | + | chr7_2:47929222-47929241 | None:intergenic | 30.0% | |
| GAGACTACACCTATTATATA+AGG | - | chr7_2:47929222-47929241 | Msa1060220:CDS | 30.0% | |
| TAAGGTCTTTCTTAAGATTC+TGG | - | chr7_2:47929240-47929259 | Msa1060220:CDS | 30.0% | |
| AAGGTCTTTCTTAAGATTCT+GGG | - | chr7_2:47929241-47929260 | Msa1060220:CDS | 30.0% | |
| TCAATGTGTATGAATTCAGT+TGG | - | chr7_2:47929447-47929466 | Msa1060220:intron | 30.0% | |
| ! | AAGTAGCTATAGTGTACTTT+TGG | - | chr7_2:47929485-47929504 | Msa1060220:intron | 30.0% |
| ! | GAAGCTATCAAATCTTTTAG+AGG | - | chr7_2:47929598-47929617 | Msa1060220:intron | 30.0% |
| TGTACTTCTTGATCTTTACA+AGG | - | chr7_2:47929657-47929676 | Msa1060220:intron | 30.0% | |
| AGAAGTTACTGTATAATCAC+AGG | - | chr7_2:47929879-47929898 | Msa1060220:intron | 30.0% | |
| TTTCTTGCTTGATAGAAACT+TGG | + | chr7_2:47930148-47930167 | None:intergenic | 30.0% | |
| CCTTGTATGATCTATATTGT+AGG | + | chr7_2:47930360-47930379 | None:intergenic | 30.0% | |
| CCTACAATATAGATCATACA+AGG | - | chr7_2:47930357-47930376 | Msa1060220:CDS | 30.0% | |
| CAGGAAAAAAACAGTATTGT+AGG | + | chr7_2:47930406-47930425 | None:intergenic | 30.0% | |
| !!! | AATGATTATTTTTGGGCTCA+AGG | - | chr7_2:47930994-47931013 | Msa1060220:intron | 30.0% |
| ATTGATTGTTTAGGGAAACT+TGG | - | chr7_2:47931063-47931082 | Msa1060220:intron | 30.0% | |
| TTGATTGTTTAGGGAAACTT+GGG | - | chr7_2:47931064-47931083 | Msa1060220:intron | 30.0% | |
| ! | ATTCTTGAACAAGTTTTGCA+AGG | - | chr7_2:47931229-47931248 | Msa1060220:intron | 30.0% |
| CCTAAATCATCCATAAACTT+GGG | + | chr7_2:47931337-47931356 | None:intergenic | 30.0% | |
| CCAAGTTTATGGATGATTTA+GGG | - | chr7_2:47931335-47931354 | Msa1060220:intron | 30.0% | |
| ATCCATCAATTCCTTTCAAA+AGG | + | chr7_2:47931372-47931391 | None:intergenic | 30.0% | |
| GAAGATATTTCCTCAAAGAT+GGG | + | chr7_2:47931433-47931452 | None:intergenic | 30.0% | |
| AGAAGATATTTCCTCAAAGA+TGG | + | chr7_2:47931434-47931453 | None:intergenic | 30.0% | |
| TATATATTGTCTTCGGTCTA+GGG | - | chr7_2:47931502-47931521 | Msa1060220:intron | 30.0% | |
| !! | CACCATTTTAAGGACAAAAA+GGG | + | chr7_2:47931575-47931594 | None:intergenic | 30.0% |
| !! | TCACCATTTTAAGGACAAAA+AGG | + | chr7_2:47931576-47931595 | None:intergenic | 30.0% |
| ! | TTTTTGTCCTTAAAATGGTG+AGG | - | chr7_2:47931575-47931594 | Msa1060220:CDS | 30.0% |
| ! | GAATAAGGTTTGCTTGTATT+TGG | - | chr7_2:47931607-47931626 | Msa1060220:CDS | 30.0% |
| TTTCCATGATTCTTGAGTAT+AGG | - | chr7_2:47931680-47931699 | Msa1060220:exon | 30.0% | |
| TTCCATGATTCTTGAGTATA+GGG | - | chr7_2:47931681-47931700 | Msa1060220:exon | 30.0% | |
| TGTGACAATGTTTATTCCTT+GGG | + | chr7_2:47931761-47931780 | None:intergenic | 30.0% | |
| ATGTGACAATGTTTATTCCT+TGG | + | chr7_2:47931762-47931781 | None:intergenic | 30.0% | |
| ATGCACCTTATGATGAAGAT+GGG | + | chr7_2:47928643-47928662 | None:intergenic | 35.0% | |
| AAAAGGAGAAACAGAAAGGA+AGG | - | chr7_2:47928674-47928693 | Msa1060220:three_prime_UTR | 35.0% | |
| AAAGGAGAAACAGAAAGGAA+GGG | - | chr7_2:47928675-47928694 | Msa1060220:three_prime_UTR | 35.0% | |
| GTGACATATACAGAGAGAAA+TGG | - | chr7_2:47928709-47928728 | Msa1060220:three_prime_UTR | 35.0% | |
| CATATACAGAGAGAAATGGA+AGG | - | chr7_2:47928713-47928732 | Msa1060220:three_prime_UTR | 35.0% | |
| !! | ACATAAGGAGTATCACCATA+AGG | + | chr7_2:47928806-47928825 | None:intergenic | 35.0% |
| ATGTGTATGAATTCAGTTGG+TGG | - | chr7_2:47929450-47929469 | Msa1060220:intron | 35.0% | |
| AAGTACACTATAGCTACTTC+TGG | + | chr7_2:47929484-47929503 | None:intergenic | 35.0% | |
| ! | AGCTATAGTGTACTTTTGGA+AGG | - | chr7_2:47929489-47929508 | Msa1060220:intron | 35.0% |
| !! | CGGTCTATGTTGTTTCATAT+TGG | - | chr7_2:47929774-47929793 | Msa1060220:intron | 35.0% |
| TCAGAAATGTGGAAGAATAG+AGG | - | chr7_2:47930022-47930041 | Msa1060220:intron | 35.0% | |
| GCAAGAAACTGCAAGATTAT+TGG | - | chr7_2:47930160-47930179 | Msa1060220:intron | 35.0% | |
| !!! | TGACACTATTGTTTTAGTCC+TGG | - | chr7_2:47930306-47930325 | Msa1060220:CDS | 35.0% |
| ATTTGTACAAGGACTAAAGC+AGG | + | chr7_2:47930425-47930444 | None:intergenic | 35.0% | |
| ATCCAATATGAGTGAGATGA+AGG | - | chr7_2:47930569-47930588 | Msa1060220:intron | 35.0% | |
| GTAAAACAGGTATATTAGCG+AGG | - | chr7_2:47930695-47930714 | Msa1060220:intron | 35.0% | |
| !! | GTAGTTTGTCTTTTGCATGT+AGG | + | chr7_2:47931095-47931114 | None:intergenic | 35.0% |
| GCAAAAGACAAACTACATGA+TGG | - | chr7_2:47931099-47931118 | Msa1060220:intron | 35.0% | |
| AGATTGTCTCATTAGGCATA+AGG | + | chr7_2:47931188-47931207 | None:intergenic | 35.0% | |
| CATAACGAGATTGTCTCATT+AGG | + | chr7_2:47931195-47931214 | None:intergenic | 35.0% | |
| AATGAGACAATCTCGTTATG+AGG | - | chr7_2:47931195-47931214 | Msa1060220:intron | 35.0% | |
| CAATTCTTCAGCTCTATTTC+TGG | + | chr7_2:47931284-47931303 | None:intergenic | 35.0% | |
| CCCAAGTTTATGGATGATTT+AGG | - | chr7_2:47931334-47931353 | Msa1060220:intron | 35.0% | |
| CCCTAAATCATCCATAAACT+TGG | + | chr7_2:47931338-47931357 | None:intergenic | 35.0% | |
| !!! | CTTGATGATGACCTTTTGAA+AGG | - | chr7_2:47931358-47931377 | Msa1060220:intron | 35.0% |
| !! | GACCTTTTGAAAGGAATTGA+TGG | - | chr7_2:47931367-47931386 | Msa1060220:intron | 35.0% |
| GTATATATTGTCTTCGGTCT+AGG | - | chr7_2:47931501-47931520 | Msa1060220:intron | 35.0% | |
| GCAAAGGAAGAATACGAAAT+CGG | + | chr7_2:47931553-47931572 | None:intergenic | 35.0% | |
| TTTAAGGACAAAAAGGGCAA+AGG | + | chr7_2:47931569-47931588 | None:intergenic | 35.0% | |
| ! | TGCCCTTTTTGTCCTTAAAA+TGG | - | chr7_2:47931570-47931589 | Msa1060220:CDS | 35.0% |
| AAGAACATTGACAAGTTTCC+AGG | + | chr7_2:47931658-47931677 | None:intergenic | 35.0% | |
| GGGAGAGATTCAGTGAAAAT+GGG | + | chr7_2:47928623-47928642 | None:intergenic | 40.0% | |
| TGGGAGAGATTCAGTGAAAA+TGG | + | chr7_2:47928624-47928643 | None:intergenic | 40.0% | |
| TCTCTCCCATCTTCATCATA+AGG | - | chr7_2:47928635-47928654 | Msa1060220:three_prime_UTR | 40.0% | |
| CATGCACCTTATGATGAAGA+TGG | + | chr7_2:47928644-47928663 | None:intergenic | 40.0% | |
| !! | GCATGTTTGGCTTTGACATA+AGG | + | chr7_2:47928821-47928840 | None:intergenic | 40.0% |
| GAATATAGGCAGTAAAAGGC+AGG | - | chr7_2:47929135-47929154 | Msa1060220:CDS | 40.0% | |
| CTGGGAATCTTTCAGATTCA+AGG | - | chr7_2:47929259-47929278 | Msa1060220:CDS | 40.0% | |
| !! | TTTTGGAAGGCAATCAATGC+TGG | - | chr7_2:47929502-47929521 | Msa1060220:intron | 40.0% |
| AATCAATGCTGGAGACAAAG+TGG | - | chr7_2:47929513-47929532 | Msa1060220:intron | 40.0% | |
| ACTCTGTCTAACATGACACA+TGG | - | chr7_2:47929914-47929933 | Msa1060220:intron | 40.0% | |
| CATGACACATGGCTAAAACT+CGG | - | chr7_2:47929925-47929944 | Msa1060220:intron | 40.0% | |
| AAGCTAAGGCTTATCTACCA+AGG | - | chr7_2:47930068-47930087 | Msa1060220:intron | 40.0% | |
| CTTTGTCGTCCTTCCATTAA+AGG | + | chr7_2:47930099-47930118 | None:intergenic | 40.0% | |
| GTCCTTCATCTCACTCATAT+TGG | + | chr7_2:47930574-47930593 | None:intergenic | 40.0% | |
| GGCTACAAGCAAAAACAAAG+TGG | - | chr7_2:47930891-47930910 | Msa1060220:CDS | 40.0% | |
| TTGTTTAGGGAAACTTGGGT+TGG | - | chr7_2:47931068-47931087 | Msa1060220:intron | 40.0% | |
| TGTTTAGGGAAACTTGGGTT+GGG | - | chr7_2:47931069-47931088 | Msa1060220:intron | 40.0% | |
| ! | GGCTAAATTCAAAGCCTTGT+TGG | + | chr7_2:47931167-47931186 | None:intergenic | 40.0% |
| GACTTGATTTCATCAGAACC+TGG | + | chr7_2:47931262-47931281 | None:intergenic | 40.0% | |
| ! | AAACTTGGGTTGTGGCAAAT+TGG | + | chr7_2:47931323-47931342 | None:intergenic | 40.0% |
| TTTGCCACAACCCAAGTTTA+TGG | - | chr7_2:47931324-47931343 | Msa1060220:intron | 40.0% | |
| ! | TCATCCATAAACTTGGGTTG+TGG | + | chr7_2:47931331-47931350 | None:intergenic | 40.0% |
| GGAAGTCTTCTTGATCTAGT+TGG | + | chr7_2:47931412-47931431 | None:intergenic | 40.0% | |
| AAGAAGACTTCCCATCTTTG+AGG | - | chr7_2:47931420-47931439 | Msa1060220:intron | 40.0% | |
| TACGAAATCGGAGAAGAGAA+TGG | + | chr7_2:47931541-47931560 | None:intergenic | 40.0% | |
| ATGATGAATAATCGCAGTCC+TGG | - | chr7_2:47931637-47931656 | Msa1060220:CDS | 40.0% | |
| CTCCCTATACTCAAGAATCA+TGG | + | chr7_2:47931686-47931705 | None:intergenic | 40.0% | |
| !! | TGAGAAGTGTTGAATTCCCA+AGG | - | chr7_2:47931742-47931761 | Msa1060220:five_prime_UTR | 40.0% |
| GTGCATGTGCCCTGAATAAA+AGG | - | chr7_2:47928657-47928676 | Msa1060220:three_prime_UTR | 45.0% | |
| TGTCAAAGCCAAACATGCTC+AGG | - | chr7_2:47928823-47928842 | Msa1060220:three_prime_UTR | 45.0% | |
| AAAGCCAAACATGCTCAGGT+AGG | - | chr7_2:47928827-47928846 | Msa1060220:three_prime_UTR | 45.0% | |
| AGTACCTACCTGAGCATGTT+TGG | + | chr7_2:47928834-47928853 | None:intergenic | 45.0% | |
| CAAAGTGGATAGTGCTCTGA+AGG | - | chr7_2:47929528-47929547 | Msa1060220:intron | 45.0% | |
| !! | GGATAGTGCTCTGAAGGATA+TGG | - | chr7_2:47929534-47929553 | Msa1060220:intron | 45.0% |
| AAGGCTTATCTACCAAGGTG+AGG | - | chr7_2:47930073-47930092 | Msa1060220:intron | 45.0% | |
| TACCAAGGTGAGGCCTTTAA+TGG | - | chr7_2:47930083-47930102 | Msa1060220:intron | 45.0% | |
| TTCCATTAAAGGCCTCACCT+TGG | + | chr7_2:47930088-47930107 | None:intergenic | 45.0% | |
| AAGGTGAGGCCTTTAATGGA+AGG | - | chr7_2:47930087-47930106 | Msa1060220:intron | 45.0% | |
| ACAAAGACTGCTCGTTCTCA+TGG | - | chr7_2:47930113-47930132 | Msa1060220:intron | 45.0% | |
| GACAAACTACATGATGGCTG+AGG | - | chr7_2:47931105-47931124 | Msa1060220:intron | 45.0% | |
| AAACTACATGATGGCTGAGG+TGG | - | chr7_2:47931108-47931127 | Msa1060220:intron | 45.0% | |
| GATAGATGCTGATGCCAACA+AGG | - | chr7_2:47931150-47931169 | Msa1060220:intron | 45.0% | |
| ! | GTTTTGCAAGGAAAGCTTCC+AGG | - | chr7_2:47931241-47931260 | Msa1060220:intron | 45.0% |
| ! | TATTGTCTTCGGTCTAGGGT+TGG | - | chr7_2:47931506-47931525 | Msa1060220:intron | 45.0% |
| ! | ATTGTCTTCGGTCTAGGGTT+GGG | - | chr7_2:47931507-47931526 | Msa1060220:intron | 45.0% |
| !! | AATAACTTAAAAATAATAAA+AGG | + | chr7_2:47929305-47929324 | None:intergenic | 5.0% |
| !! | TTATCAAAAAAAAAAATTAA+AGG | + | chr7_2:47930658-47930677 | None:intergenic | 5.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 47928620 | 47931793 | 47928620 | ID=Msa1060220;Name=Msa1060220 |
| chr7_2 | mRNA | 47928620 | 47931793 | 47928620 | ID=Msa1060220-mRNA-1;Parent=Msa1060220;Name=Msa1060220-mRNA-1;_AED=0.10;_eAED=0.10;_QI=108|1|1|1|1|1|4|316|295 |
| chr7_2 | exon | 47928620 | 47929337 | 47928620 | ID=Msa1060220-mRNA-1:exon:8663;Parent=Msa1060220-mRNA-1 |
| chr7_2 | exon | 47930232 | 47930387 | 47930232 | ID=Msa1060220-mRNA-1:exon:8662;Parent=Msa1060220-mRNA-1 |
| chr7_2 | exon | 47930735 | 47930947 | 47930735 | ID=Msa1060220-mRNA-1:exon:8661;Parent=Msa1060220-mRNA-1 |
| chr7_2 | exon | 47931569 | 47931793 | 47931569 | ID=Msa1060220-mRNA-1:exon:8660;Parent=Msa1060220-mRNA-1 |
| chr7_2 | five_prime_UTR | 47931686 | 47931793 | 47931686 | ID=Msa1060220-mRNA-1:five_prime_utr;Parent=Msa1060220-mRNA-1 |
| chr7_2 | CDS | 47931569 | 47931685 | 47931569 | ID=Msa1060220-mRNA-1:cds;Parent=Msa1060220-mRNA-1 |
| chr7_2 | CDS | 47930735 | 47930947 | 47930735 | ID=Msa1060220-mRNA-1:cds;Parent=Msa1060220-mRNA-1 |
| chr7_2 | CDS | 47930232 | 47930387 | 47930232 | ID=Msa1060220-mRNA-1:cds;Parent=Msa1060220-mRNA-1 |
| chr7_2 | CDS | 47928936 | 47929337 | 47928936 | ID=Msa1060220-mRNA-1:cds;Parent=Msa1060220-mRNA-1 |
| chr7_2 | three_prime_UTR | 47928620 | 47928935 | 47928620 | ID=Msa1060220-mRNA-1:three_prime_utr;Parent=Msa1060220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
