AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1105470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1105470 MtrunA17_Chr7g0237621 99.317 293 2 0 1 293 18 310 0.0 599
Msa1105470 MtrunA17_Chr7g0237581 76.325 283 67 0 11 293 16 298 1.18e-162 459
Msa1105470 MtrunA17_Chr8g0371521 53.731 268 111 3 15 274 32 294 7.94e-93 288
Msa1105470 MtrunA17_Chr2g0292681 54.286 245 109 1 15 256 47 291 3.74e-84 269
Msa1105470 MtrunA17_Chr7g0237611 85.106 94 13 1 312 404 22 115 2.40e-48 160
Msa1105470 MtrunA17_Chr2g0292671 45.342 161 85 1 88 245 2 162 1.30e-41 145
Msa1105470 MtrunA17_Chr2g0292661 71.667 60 17 0 15 74 44 103 1.11e-23 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1105470 AT5G48850.1 65.172 290 94 3 9 293 17 304 1.20e-130 379
Msa1105470 AT1G04770.1 58.596 285 105 5 19 293 20 301 1.01e-111 330
Msa1105470 AT3G51280.1 55.385 260 111 2 19 274 30 288 8.45e-92 284
Msa1105470 AT4G20900.2 53.469 245 106 2 10 248 42 284 1.65e-82 260
Msa1105470 AT4G20900.1 50.192 261 106 3 10 248 42 300 2.35e-78 249
Msa1105470 AT5G44330.1 52.489 221 102 1 24 241 49 269 4.20e-66 218
Msa1105470 AT5G22794.2 65.672 67 23 0 96 162 71 137 1.77e-22 95.9
Msa1105470 AT5G22794.1 56.716 67 22 1 96 162 71 130 5.20e-16 76.6

Find 87 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAAGTTTATGGATGATTT+AGG 0.095537 7_3:+43960371 Msa1105470:CDS
CTTGCCACAACCTAAGTTTA+TGG 0.146740 7_3:+43960361 Msa1105470:CDS
CAATTCTTCAGCTCTATTTC+TGG 0.147773 7_3:-43960318 None:intergenic
AGCTGAGATGCGTATGTTTA+TGG 0.178762 7_3:+43961132 Msa1105470:CDS
CTTTGTCGTCCTTCCATTAA+AGG 0.194578 7_3:-43958719 None:intergenic
TGTTTCTGCTGGTGAGATTT+TGG 0.216667 7_3:+43960976 Msa1105470:CDS
TGGGAGAGATTCAGTGAAAA+TGG 0.247645 7_3:-43957210 None:intergenic
CTAAGTTTATGGATGATTTA+GGG 0.273109 7_3:+43960372 Msa1105470:CDS
GTTATTCATAAGGTTCCTTA+TGG 0.304411 7_3:+43957373 Msa1105470:CDS
TACCAAGGTGAGGCCTTTAA+TGG 0.310819 7_3:+43958706 Msa1105470:CDS
AACTTGCTCAAGAATTAAAT+AGG 0.338540 7_3:-43960258 None:intergenic
TTGATGGATTACTTAATGTT+TGG 0.342938 7_3:+43960420 Msa1105470:CDS
TAGTTGGTGTAGAAGGTATT+TGG 0.348772 7_3:-43961244 None:intergenic
AAGTTGCTATAGTGTACTTT+TGG 0.357890 7_3:+43958116 Msa1105470:CDS
AGTACCTACCTGAGCATGTT+TGG 0.365922 7_3:-43957416 None:intergenic
GTCTGGATAGTTGGTGTAGA+AGG 0.369601 7_3:-43961251 None:intergenic
AAGTACACTATAGCAACTTC+TGG 0.375170 7_3:-43958112 None:intergenic
GGGAGAGATTCAGTGAAAAT+GGG 0.383949 7_3:-43957209 None:intergenic
GGATAGTGCTCTAAAGGATA+TGG 0.385948 7_3:+43958165 Msa1105470:CDS
ATGGATGAGGGTGTTGTTGC+AGG 0.401577 7_3:+43961019 Msa1105470:CDS
GCATGTTTGGCTTTGACATA+AGG 0.405107 7_3:-43957403 None:intergenic
TCTCTATCATGTTATTCATA+AGG 0.406833 7_3:+43957363 Msa1105470:CDS
AGAAGATATTTCCTCAAAGA+TGG 0.410475 7_3:-43960468 None:intergenic
ATTGATTGTTTAGGGAAACT+TGG 0.412436 7_3:+43960100 Msa1105470:intron
CATAACGAGATTGTCTCATT+AGG 0.414447 7_3:-43960229 None:intergenic
TGTTTAGGGAAACTTGGGTT+GGG 0.416088 7_3:+43960106 Msa1105470:intron
ATCCATCAATTCCTTTCAAA+AGG 0.416312 7_3:-43960406 None:intergenic
AATTCAAAGTACATAACATT+GGG 0.418986 7_3:-43961297 None:intergenic
AAGAAGACTTCCCATCTTTG+AGG 0.419105 7_3:+43960457 Msa1105470:CDS
GATCATGTTTGTGTTTCTGC+TGG 0.423708 7_3:+43960965 Msa1105470:CDS
GGAAGTCTTCTTGATCTAGT+TGG 0.437256 7_3:-43960446 None:intergenic
CCGGATTCTGCTCCTCCGAT+TGG 0.439493 7_3:+43961085 Msa1105470:CDS
GGCTAAATTCAAAGCCTTGT+TGG 0.440956 7_3:-43960201 None:intergenic
CAAAGTGGATAGTGCTCTAA+AGG 0.448477 7_3:+43958159 Msa1105470:CDS
GGAGAGCATGTTTGATGCTC+AGG 0.453568 7_3:+43961153 Msa1105470:CDS
GGTTTAAGTTAGAGTTGAAA+GGG 0.457070 7_3:-43961276 None:intergenic
GCAAGAAACAGCAAGACTAT+TGG 0.460999 7_3:+43958783 Msa1105470:CDS
TCTCTCCCATCTTCATCATA+AGG 0.470766 7_3:+43957224 Msa1105470:five_prime_UTR
TTAGAGTTGAAAGGGTGGTC+TGG 0.474314 7_3:-43961268 None:intergenic
TGAAAGTGAAGATGATGATC+CGG 0.478553 7_3:+43961066 Msa1105470:CDS
TTTCTTGCTTGATAGAAACT+TGG 0.480530 7_3:-43958768 None:intergenic
CCTAAATCATCCATAAACTT+AGG 0.481001 7_3:-43960371 None:intergenic
GTGACATATACAGAGAGAAA+TGG 0.484017 7_3:+43957294 Msa1105470:exon
AGATTGTCTCATTAGGCATA+AGG 0.484330 7_3:-43960222 None:intergenic
GAAAGGGTGGTCTGGATAGT+TGG 0.488319 7_3:-43961260 None:intergenic
CCAATCGGAGGAGCAGAATC+CGG 0.489121 7_3:-43961085 None:intergenic
GGGTTTAAGTTAGAGTTGAA+AGG 0.495838 7_3:-43961277 None:intergenic
TGTCAAAGCCAAACATGCTC+AGG 0.496739 7_3:+43957408 Msa1105470:CDS
CATGCACCTTATGATGAAGA+TGG 0.506907 7_3:-43957230 None:intergenic
AAATTCAAAGTACATAACAT+TGG 0.511981 7_3:-43961298 None:intergenic
ACAAAGACTGCTCGCTCTCA+TGG 0.512305 7_3:+43958736 Msa1105470:CDS
AATGAGACAATCTCGTTATG+AGG 0.514397 7_3:+43960232 Msa1105470:CDS
TTGTTTAGGGAAACTTGGGT+TGG 0.515491 7_3:+43960105 Msa1105470:intron
AAACATACGCATCTCAGCTA+TGG 0.517065 7_3:-43961128 None:intergenic
TGATGAGGTGCAGGCTGCAA+TGG 0.517896 7_3:+43961000 Msa1105470:CDS
TCAGAAATGTGGAAGAATAG+AGG 0.535352 7_3:+43958645 Msa1105470:intron
GAAGATATTTCCTCAAAGAT+GGG 0.535613 7_3:-43960467 None:intergenic
TGTACTTCTTGATCTTTACA+AGG 0.536497 7_3:+43958288 Msa1105470:CDS
GACTTGATTTCATCAGAACC+TGG 0.545316 7_3:-43960296 None:intergenic
TTGATTGTTTAGGGAAACTT+GGG 0.545737 7_3:+43960101 Msa1105470:intron
AAACTTAGGTTGTGGCAAGT+TGG 0.547589 7_3:-43960357 None:intergenic
GGAGAGATTCAGTGAAAATG+GGG 0.548864 7_3:-43957208 None:intergenic
ACATAAGGAGTATCACCATA+AGG 0.554287 7_3:-43957388 None:intergenic
AGTACGACTTGCAAGCCAAT+CGG 0.558590 7_3:-43961100 None:intergenic
TCATCCATAAACTTAGGTTG+TGG 0.560954 7_3:-43960365 None:intergenic
GTATTGAAGAAAAGTTCTAA+AGG 0.565096 7_3:+43957328 Msa1105470:CDS
GCAGGTGATGATGAAGTGAT+TGG 0.580959 7_3:+43961037 Msa1105470:CDS
TTAAGTTAGAGTTGAAAGGG+TGG 0.582483 7_3:-43961273 None:intergenic
ATGCACCTTATGATGAAGAT+GGG 0.587704 7_3:-43957229 None:intergenic
GGTGCAGGCTGCAATGGATG+AGG 0.592082 7_3:+43961006 Msa1105470:CDS
AAACTACATGATGGCTGAGG+TGG 0.597629 7_3:+43960145 Msa1105470:CDS
TGATTGAATCATTAATTCAG+AGG 0.599349 7_3:+43961191 Msa1105470:CDS
GCAAAAGACAAACTACATGA+TGG 0.600357 7_3:+43960136 Msa1105470:CDS
TTCCATTAAAGGCCTCACCT+TGG 0.605669 7_3:-43958708 None:intergenic
GATAGATGCTGATGCCAACA+AGG 0.611933 7_3:+43960187 Msa1105470:CDS
AAGGTGAGGCCTTTAATGGA+AGG 0.621345 7_3:+43958710 Msa1105470:CDS
TGTTTGATGCTCAGGATGCG+AGG 0.628433 7_3:+43961161 Msa1105470:CDS
AATCAATGCTGGAGACAAAG+TGG 0.650220 7_3:+43958144 Msa1105470:CDS
CATATACAGAGAGAAATGGA+AGG 0.651435 7_3:+43957298 Msa1105470:exon
GACAAACTACATGATGGCTG+AGG 0.652612 7_3:+43960142 Msa1105470:CDS
GTGCAGGCTGCAATGGATGA+GGG 0.654889 7_3:+43961007 Msa1105470:CDS
AAGCTAAGACTTATCTACCA+AGG 0.663143 7_3:+43958691 Msa1105470:CDS
GTAGAAGGTATTTGGTGACA+TGG 0.666812 7_3:-43961236 None:intergenic
AAGACTTATCTACCAAGGTG+AGG 0.669025 7_3:+43958696 Msa1105470:CDS
ACGACTTGCAAGCCAATCGG+AGG 0.669091 7_3:-43961097 None:intergenic
AGAGATTCAGTGAAAATGGG+GGG 0.681806 7_3:-43957206 None:intergenic
GAGAGATTCAGTGAAAATGG+GGG 0.712050 7_3:-43957207 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATTTTATTTTAAAATT+TGG - chr7_3:43959672-43959691 None:intergenic 0.0%
!!! AATTTTAAAATAAAATAATA+TGG + chr7_3:43959672-43959691 Msa1105470:intron 0.0%
!! GAATAACTTAAAAATAAAAA+AGG - chr7_3:43957903-43957922 None:intergenic 10.0%
!! CTATATAATTAGTAAATTAT+CGG + chr7_3:43958385-43958404 Msa1105470:intron 10.0%
!!! TTTAAATTTTTTAGTTTCAT+GGG - chr7_3:43958930-43958949 None:intergenic 10.0%
!!! TTTTAAATTTTTTAGTTTCA+TGG - chr7_3:43958931-43958950 None:intergenic 10.0%
!! AAATTTACTTATATATGAAT+TGG + chr7_3:43959379-43959398 Msa1105470:intron 10.0%
!! AAAATCAAATACTATATAAA+AGG - chr7_3:43959406-43959425 None:intergenic 10.0%
!!! GTTTATCAATATTTTTTTAA+AGG - chr7_3:43959520-43959539 None:intergenic 10.0%
!!! TTTGTAAAAATGATTATTTT+TGG + chr7_3:43959846-43959865 Msa1105470:intron 10.0%
!!! TTGTAAAAATGATTATTTTT+GGG + chr7_3:43959847-43959866 Msa1105470:intron 10.0%
!! ATTTAGAGATCAAATTAAAA+GGG - chr7_3:43957531-43957550 None:intergenic 15.0%
!! AATTTAGAGATCAAATTAAA+AGG - chr7_3:43957532-43957551 None:intergenic 15.0%
!!! AATATTTTTGGTACAAAATT+TGG - chr7_3:43957765-43957784 None:intergenic 15.0%
!!! TTCAAAAAGACAAATATTTT+TGG - chr7_3:43957777-43957796 None:intergenic 15.0%
!! ATTTACACAAAAACTAAATT+AGG - chr7_3:43958626-43958645 None:intergenic 15.0%
!! TTATATTGTTCAAATATTAC+CGG - chr7_3:43959191-43959210 None:intergenic 15.0%
!!! ATATATAAGTAAATTTTGCA+AGG - chr7_3:43959375-43959394 None:intergenic 15.0%
!! TAAATAAATATTACAACATG+TGG + chr7_3:43959455-43959474 Msa1105470:intron 15.0%
!!! AAATTTGTTCTTATAGAAAT+TGG - chr7_3:43959486-43959505 None:intergenic 15.0%
!!! GAAATACAAAAAATTGTTTT+AGG - chr7_3:43959698-43959717 None:intergenic 15.0%
!!! CAAATAAATATTTTTACAAG+AGG + chr7_3:43959730-43959749 Msa1105470:intron 15.0%
!! TGACTTTAAATTGATGTATA+TGG + chr7_3:43957606-43957625 Msa1105470:intron 20.0%
!!! TAATTTACTATTACCTTTTC+AGG + chr7_3:43957648-43957667 Msa1105470:intron 20.0%
!!! GAATCATTTTGCTTATATTT+TGG + chr7_3:43957794-43957813 Msa1105470:intron 20.0%
!!! ATTTTGCTTATATTTTGGTA+CGG + chr7_3:43957799-43957818 Msa1105470:intron 20.0%
!!! TTCTACTTTTTTACATTCTT+TGG + chr7_3:43957937-43957956 Msa1105470:intron 20.0%
!! AATATAATGAAACACATGTT+TGG - chr7_3:43958319-43958338 None:intergenic 20.0%
!! GATGTTCAATTATCATATTA+TGG + chr7_3:43958348-43958367 Msa1105470:intron 20.0%
!! TATATTGTTCAAATATTACC+GGG - chr7_3:43959190-43959209 None:intergenic 20.0%
!! AAAGTAAAAATATTCGTACA+TGG - chr7_3:43959300-43959319 None:intergenic 20.0%
!! CAAAATGTAGTATATTTACA+AGG - chr7_3:43959327-43959346 None:intergenic 20.0%
!!! AATTTTTTTCTTCAACACAA+TGG + chr7_3:43959798-43959817 Msa1105470:intron 20.0%
!!! AGATTTTCTCTTTTATATCT+AGG + chr7_3:43960058-43960077 Msa1105470:intron 20.0%
!! TATGTTGTATATATTGTCTT+AGG + chr7_3:43960532-43960551 Msa1105470:intron 20.0%
!!! ATTGATGATGAATAATAATG+TGG + chr7_3:43960670-43960689 Msa1105470:intron 20.0%
!!! TTGATGATGAATAATAATGT+GGG + chr7_3:43960671-43960690 Msa1105470:intron 20.0%
!! ATAAGGATGTTAATAAGAAT+TGG + chr7_3:43960906-43960925 Msa1105470:intron 20.0%
!! AATTCAAAGTACATAACATT+GGG - chr7_3:43961300-43961319 None:intergenic 20.0%
!! AAATTCAAAGTACATAACAT+TGG - chr7_3:43961301-43961320 None:intergenic 20.0%
!! GTATTGAAGAAAAGTTCTAA+AGG + chr7_3:43957328-43957347 Msa1105470:CDS 25.0%
! TCTCTATCATGTTATTCATA+AGG + chr7_3:43957363-43957382 Msa1105470:CDS 25.0%
! CAAATTAAAAGGGATAAAGA+TGG - chr7_3:43957521-43957540 None:intergenic 25.0%
! TATGTTATATTGATCAGTTC+TGG + chr7_3:43957553-43957572 Msa1105470:intron 25.0%
! TAAGAAAGACAGTGTATAAT+AGG - chr7_3:43957835-43957854 None:intergenic 25.0%
! ACACCTTTCATATAAAATGT+TGG + chr7_3:43958574-43958593 Msa1105470:intron 25.0%
!! CAACCAACATTTTATATGAA+AGG - chr7_3:43958580-43958599 None:intergenic 25.0%
!! TTTTGTGTAAATCAGAAATG+TGG + chr7_3:43958634-43958653 Msa1105470:intron 25.0%
! ATTAAACCAAGAGAAATACT+TGG + chr7_3:43958867-43958886 Msa1105470:intron 25.0%
! AACACTAAACATTACATGTT+AGG + chr7_3:43958898-43958917 Msa1105470:intron 25.0%
! CTTGTATGATCTATATTGTA+GGG - chr7_3:43959223-43959242 None:intergenic 25.0%
! CTACAATATAGATCATACAA+GGG + chr7_3:43959222-43959241 Msa1105470:intron 25.0%
! ATAAAAGAGAAAATCTTGTG+TGG - chr7_3:43960054-43960073 None:intergenic 25.0%
!! AACACATTGATTGATTGTTT+AGG + chr7_3:43960091-43960110 Msa1105470:intron 25.0%
!! ACACATTGATTGATTGTTTA+GGG + chr7_3:43960092-43960111 Msa1105470:intron 25.0%
!! AACTTGCTCAAGAATTAAAT+AGG - chr7_3:43960261-43960280 None:intergenic 25.0%
! CTAAGTTTATGGATGATTTA+GGG + chr7_3:43960372-43960391 Msa1105470:CDS 25.0%
!!! TTGATGGATTACTTAATGTT+TGG + chr7_3:43960420-43960439 Msa1105470:CDS 25.0%
!!! ATCTTCTTTTAGAGATCAAT+TGG + chr7_3:43960484-43960503 Msa1105470:CDS 25.0%
!! TATTTTTCCTCACCATTTTA+AGG - chr7_3:43960622-43960641 None:intergenic 25.0%
! GAATAATGTTTGCTTGTATT+TGG + chr7_3:43960644-43960663 Msa1105470:intron 25.0%
! CTCAAATAAAACGACAATAA+GGG - chr7_3:43960784-43960803 None:intergenic 25.0%
! TCTCAAATAAAACGACAATA+AGG - chr7_3:43960785-43960804 None:intergenic 25.0%
! TGATTGAATCATTAATTCAG+AGG + chr7_3:43961191-43961210 Msa1105470:CDS 25.0%
AAAAAGAGGAGAAACAGAAA+GGG + chr7_3:43957260-43957279 Msa1105470:five_prime_UTR 30.0%
GTTATTCATAAGGTTCCTTA+TGG + chr7_3:43957373-43957392 Msa1105470:CDS 30.0%
!! TTAATTTGTCACTCCTGAAA+AGG - chr7_3:43957664-43957683 None:intergenic 30.0%
TGCCTGTATTCTGTTATAAA+GGG - chr7_3:43957708-43957727 None:intergenic 30.0%
ATTCCTTGAATCTGAATTCA+AGG + chr7_3:43957857-43957876 Msa1105470:intron 30.0%
AATCCTTGAATTCAGATTCA+AGG - chr7_3:43957863-43957882 None:intergenic 30.0%
TCAATGTGTATGAAATCAGT+TGG + chr7_3:43958078-43958097 Msa1105470:intron 30.0%
! AAGTTGCTATAGTGTACTTT+TGG + chr7_3:43958116-43958135 Msa1105470:CDS 30.0%
! GAAGCTATCAAATCTTTTAG+AGG + chr7_3:43958229-43958248 Msa1105470:CDS 30.0%
TGTACTTCTTGATCTTTACA+AGG + chr7_3:43958288-43958307 Msa1105470:CDS 30.0%
ACAGAACATGATATTGACAT+TGG + chr7_3:43958469-43958488 Msa1105470:intron 30.0%
TTTCTTGCTTGATAGAAACT+TGG - chr7_3:43958771-43958790 None:intergenic 30.0%
CCTTGTATGATCTATATTGT+AGG - chr7_3:43959224-43959243 None:intergenic 30.0%
CCTACAATATAGATCATACA+AGG + chr7_3:43959221-43959240 Msa1105470:intron 30.0%
!!! GCTTTGCTTTTGATTTTCAT+TGG - chr7_3:43959542-43959561 None:intergenic 30.0%
ATGAAAATCAAAAGCAAAGC+AGG + chr7_3:43959542-43959561 Msa1105470:intron 30.0%
ATTGATTGTTTAGGGAAACT+TGG + chr7_3:43960100-43960119 Msa1105470:intron 30.0%
TTGATTGTTTAGGGAAACTT+GGG + chr7_3:43960101-43960120 Msa1105470:intron 30.0%
CCTAAATCATCCATAAACTT+AGG - chr7_3:43960374-43960393 None:intergenic 30.0%
CCTAAGTTTATGGATGATTT+AGG + chr7_3:43960371-43960390 Msa1105470:CDS 30.0%
ATCCATCAATTCCTTTCAAA+AGG - chr7_3:43960409-43960428 None:intergenic 30.0%
GAAGATATTTCCTCAAAGAT+GGG - chr7_3:43960470-43960489 None:intergenic 30.0%
AGAAGATATTTCCTCAAAGA+TGG - chr7_3:43960471-43960490 None:intergenic 30.0%
GTATATATTGTCTTAGGTCT+AGG + chr7_3:43960538-43960557 Msa1105470:intron 30.0%
TATGAAATTGGAGAAGAGAA+TGG - chr7_3:43960578-43960597 None:intergenic 30.0%
!! CACCATTTTAAGGAGAAAAA+GGG - chr7_3:43960612-43960631 None:intergenic 30.0%
!! TCACCATTTTAAGGAGAAAA+AGG - chr7_3:43960613-43960632 None:intergenic 30.0%
! TTTTTCTCCTTAAAATGGTG+AGG + chr7_3:43960612-43960631 Msa1105470:intron 30.0%
TGTGACAATGTTTATTCCTT+GGG - chr7_3:43960819-43960838 None:intergenic 30.0%
TTGTGACAATGTTTATTCCT+TGG - chr7_3:43960820-43960839 None:intergenic 30.0%
GCTCAAAATGCACTATTATA+AGG + chr7_3:43960889-43960908 Msa1105470:intron 30.0%
! GGTTTAAGTTAGAGTTGAAA+GGG - chr7_3:43961279-43961298 None:intergenic 30.0%
ATGCACCTTATGATGAAGAT+GGG - chr7_3:43957232-43957251 None:intergenic 35.0%
!! TCTGTTTCTCCTCTTTTTCA+GGG - chr7_3:43957258-43957277 None:intergenic 35.0%
!! TTCTGTTTCTCCTCTTTTTC+AGG - chr7_3:43957259-43957278 None:intergenic 35.0%
GAAAAAGAGGAGAAACAGAA+AGG + chr7_3:43957259-43957278 Msa1105470:five_prime_UTR 35.0%
GTGACATATACAGAGAGAAA+TGG + chr7_3:43957294-43957313 Msa1105470:exon 35.0%
CATATACAGAGAGAAATGGA+AGG + chr7_3:43957298-43957317 Msa1105470:exon 35.0%
!! ACATAAGGAGTATCACCATA+AGG - chr7_3:43957391-43957410 None:intergenic 35.0%
CTCCCTTTATAACAGAATAC+AGG + chr7_3:43957703-43957722 Msa1105470:intron 35.0%
CTGCCTGTATTCTGTTATAA+AGG - chr7_3:43957709-43957728 None:intergenic 35.0%
AACAGAATACAGGCAGTAAA+AGG + chr7_3:43957713-43957732 Msa1105470:intron 35.0%
ATGTGTATGAAATCAGTTGG+TGG + chr7_3:43958081-43958100 Msa1105470:intron 35.0%
AAGTACACTATAGCAACTTC+TGG - chr7_3:43958115-43958134 None:intergenic 35.0%
! TGCTATAGTGTACTTTTGGA+AGG + chr7_3:43958120-43958139 Msa1105470:CDS 35.0%
!! CGGTCTATGTTGTTTCATAT+TGG + chr7_3:43958405-43958424 Msa1105470:intron 35.0%
ATCATGTTCTGTGTCTGTAT+CGG - chr7_3:43958461-43958480 None:intergenic 35.0%
TCAGAAATGTGGAAGAATAG+AGG + chr7_3:43958645-43958664 Msa1105470:intron 35.0%
AAGCTAAGACTTATCTACCA+AGG + chr7_3:43958691-43958710 Msa1105470:CDS 35.0%
ACCAAGAGAAATACTTGGTT+AGG + chr7_3:43958872-43958891 Msa1105470:intron 35.0%
!!! TGACACTATTGTTTTAGTCC+CGG + chr7_3:43959169-43959188 Msa1105470:intron 35.0%
CAGGAAAAAAACAGTATTGC+AGG - chr7_3:43959270-43959289 None:intergenic 35.0%
CTTTATCTCACTCATATTGG+AGG - chr7_3:43959432-43959451 None:intergenic 35.0%
CTCCAATATGAGTGAGATAA+AGG + chr7_3:43959430-43959449 Msa1105470:intron 35.0%
GTCCTTTATCTCACTCATAT+TGG - chr7_3:43959435-43959454 None:intergenic 35.0%
TATATCGAGAAACACTTGTG+TGG + chr7_3:43959893-43959912 Msa1105470:intron 35.0%
TGTGACCAAACCAAAATTCT+TGG - chr7_3:43960021-43960040 None:intergenic 35.0%
AAGAGAGAAGAGAGAGAAAA+TGG + chr7_3:43959957-43959976 Msa1105470:intron 35.0%
TGTGACCAAACCAAAATTCT+TGG + chr7_3:43960021-43960040 Msa1105470:intron 35.0%
!!! AAGGACCAAGAATTTTGGTT+TGG - chr7_3:43960029-43960048 None:intergenic 35.0%
!! GTAGTTTGTCTTTTGCATGT+AGG - chr7_3:43960132-43960151 None:intergenic 35.0%
GCAAAAGACAAACTACATGA+TGG + chr7_3:43960136-43960155 Msa1105470:CDS 35.0%
AGATTGTCTCATTAGGCATA+AGG - chr7_3:43960225-43960244 None:intergenic 35.0%
CATAACGAGATTGTCTCATT+AGG - chr7_3:43960232-43960251 None:intergenic 35.0%
AATGAGACAATCTCGTTATG+AGG + chr7_3:43960232-43960251 Msa1105470:CDS 35.0%
! ATTCTTGAGCAAGTTTTGCA+AGG + chr7_3:43960266-43960285 Msa1105470:CDS 35.0%
CAATTCTTCAGCTCTATTTC+TGG - chr7_3:43960321-43960340 None:intergenic 35.0%
! TCATCCATAAACTTAGGTTG+TGG - chr7_3:43960368-43960387 None:intergenic 35.0%
!!! CTTGATGATGACCTTTTGAA+AGG + chr7_3:43960395-43960414 Msa1105470:CDS 35.0%
!! GACCTTTTGAAAGGAATTGA+TGG + chr7_3:43960404-43960423 Msa1105470:CDS 35.0%
! TATTGTCTTAGGTCTAGGAT+TGG + chr7_3:43960543-43960562 Msa1105470:intron 35.0%
! ATTGTCTTAGGTCTAGGATT+GGG + chr7_3:43960544-43960563 Msa1105470:intron 35.0%
GCAAAGGACGAATATGAAAT+TGG - chr7_3:43960590-43960609 None:intergenic 35.0%
TTTAAGGAGAAAAAGGGCAA+AGG - chr7_3:43960606-43960625 None:intergenic 35.0%
! TGCCCTTTTTCTCCTTAAAA+TGG + chr7_3:43960607-43960626 Msa1105470:intron 35.0%
TTTCCAAGATTCGTGAGTAT+AGG + chr7_3:43960738-43960757 Msa1105470:intron 35.0%
TTCCAAGATTCGTGAGTATA+GGG + chr7_3:43960739-43960758 Msa1105470:intron 35.0%
! ATTGTCACAAGTTTGCTCAA+GGG + chr7_3:43960830-43960849 Msa1105470:intron 35.0%
ATAAGAATTGGTACTGCACT+TGG + chr7_3:43960918-43960937 Msa1105470:intron 35.0%
TGAAAGTGAAGATGATGATC+CGG + chr7_3:43961066-43961085 Msa1105470:CDS 35.0%
!! TAGTTGGTGTAGAAGGTATT+TGG - chr7_3:43961247-43961266 None:intergenic 35.0%
TTAAGTTAGAGTTGAAAGGG+TGG - chr7_3:43961276-43961295 None:intergenic 35.0%
! GGGTTTAAGTTAGAGTTGAA+AGG - chr7_3:43961280-43961299 None:intergenic 35.0%
GGGAGAGATTCAGTGAAAAT+GGG - chr7_3:43957212-43957231 None:intergenic 40.0%
TGGGAGAGATTCAGTGAAAA+TGG - chr7_3:43957213-43957232 None:intergenic 40.0%
TCTCTCCCATCTTCATCATA+AGG + chr7_3:43957224-43957243 Msa1105470:five_prime_UTR 40.0%
CATGCACCTTATGATGAAGA+TGG - chr7_3:43957233-43957252 None:intergenic 40.0%
!! GCATGTTTGGCTTTGACATA+AGG - chr7_3:43957406-43957425 None:intergenic 40.0%
!!! GCTTATATTTTGGTACGGAG+AGG + chr7_3:43957804-43957823 Msa1105470:intron 40.0%
!! TTTTGGAAGGCAATCAATGC+TGG + chr7_3:43958133-43958152 Msa1105470:CDS 40.0%
AATCAATGCTGGAGACAAAG+TGG + chr7_3:43958144-43958163 Msa1105470:CDS 40.0%
CAAAGTGGATAGTGCTCTAA+AGG + chr7_3:43958159-43958178 Msa1105470:CDS 40.0%
!! GGATAGTGCTCTAAAGGATA+TGG + chr7_3:43958165-43958184 Msa1105470:CDS 40.0%
ACCTTGTATGACATGACACA+TGG + chr7_3:43958538-43958557 Msa1105470:intron 40.0%
CATGACACATGGCTAAAACT+CGG + chr7_3:43958549-43958568 Msa1105470:intron 40.0%
AAGACTTATCTACCAAGGTG+AGG + chr7_3:43958696-43958715 Msa1105470:CDS 40.0%
CTTTGTCGTCCTTCCATTAA+AGG - chr7_3:43958722-43958741 None:intergenic 40.0%
GCAAGAAACAGCAAGACTAT+TGG + chr7_3:43958783-43958802 Msa1105470:CDS 40.0%
GCCTAACCAAGTATTTCTCT+TGG - chr7_3:43958876-43958895 None:intergenic 40.0%
TGTGTGAGAAAGTCTTCTGT+AGG - chr7_3:43959057-43959076 None:intergenic 40.0%
! ATTCGTACATGGACTAAAGC+AGG - chr7_3:43959289-43959308 None:intergenic 40.0%
GGCTACAAGCAAAAACAAAG+TGG + chr7_3:43959751-43959770 Msa1105470:intron 40.0%
CAAACCAAAATTCTTGGTCC+TGG - chr7_3:43960027-43960046 None:intergenic 40.0%
!!! CAGGACCAAGAATTTTGGTT+TGG + chr7_3:43959918-43959937 Msa1105470:intron 40.0%
! TGGACAAGGACCAAGAATTT+TGG - chr7_3:43960034-43960053 None:intergenic 40.0%
GAGAAAATCTTGTGTGGACA+AGG - chr7_3:43960048-43960067 None:intergenic 40.0%
TTGTTTAGGGAAACTTGGGT+TGG + chr7_3:43960105-43960124 Msa1105470:intron 40.0%
TGTTTAGGGAAACTTGGGTT+GGG + chr7_3:43960106-43960125 Msa1105470:intron 40.0%
! GGCTAAATTCAAAGCCTTGT+TGG - chr7_3:43960204-43960223 None:intergenic 40.0%
GACTTGATTTCATCAGAACC+TGG - chr7_3:43960299-43960318 None:intergenic 40.0%
! AAACTTAGGTTGTGGCAAGT+TGG - chr7_3:43960360-43960379 None:intergenic 40.0%
CTTGCCACAACCTAAGTTTA+TGG + chr7_3:43960361-43960380 Msa1105470:CDS 40.0%
GGAAGTCTTCTTGATCTAGT+TGG - chr7_3:43960449-43960468 None:intergenic 40.0%
AAGAAGACTTCCCATCTTTG+AGG + chr7_3:43960457-43960476 Msa1105470:CDS 40.0%
! CATTGTCACAAGTTTGCTCA+AGG + chr7_3:43960829-43960848 Msa1105470:intron 40.0%
!! TACTGCACTTGGTGTAAGTT+TGG + chr7_3:43960929-43960948 Msa1105470:intron 40.0%
! GATCATGTTTGTGTTTCTGC+TGG + chr7_3:43960965-43960984 Msa1105470:CDS 40.0%
!! TGTTTCTGCTGGTGAGATTT+TGG + chr7_3:43960976-43960995 Msa1105470:CDS 40.0%
!!! TGGTGAGATTTTGGTTGATG+AGG + chr7_3:43960985-43961004 Msa1105470:CDS 40.0%
AAACATACGCATCTCAGCTA+TGG - chr7_3:43961131-43961150 None:intergenic 40.0%
AGCTGAGATGCGTATGTTTA+TGG + chr7_3:43961132-43961151 Msa1105470:CDS 40.0%
!! GTAGAAGGTATTTGGTGACA+TGG - chr7_3:43961239-43961258 None:intergenic 40.0%
TGTCAAAGCCAAACATGCTC+AGG + chr7_3:43957408-43957427 Msa1105470:CDS 45.0%
AAAGCCAAACATGCTCAGGT+AGG + chr7_3:43957412-43957431 Msa1105470:intron 45.0%
AGTACCTACCTGAGCATGTT+TGG - chr7_3:43957419-43957438 None:intergenic 45.0%
GCCATGTGTCATGTCATACA+AGG - chr7_3:43958542-43958561 None:intergenic 45.0%
TACCAAGGTGAGGCCTTTAA+TGG + chr7_3:43958706-43958725 Msa1105470:CDS 45.0%
TTCCATTAAAGGCCTCACCT+TGG - chr7_3:43958711-43958730 None:intergenic 45.0%
AAGGTGAGGCCTTTAATGGA+AGG + chr7_3:43958710-43958729 Msa1105470:CDS 45.0%
GCAAAGCAGGTATATTTGCG+AGG + chr7_3:43959555-43959574 Msa1105470:intron 45.0%
! TGGACCAGGACCAAGAATTT+TGG + chr7_3:43959913-43959932 Msa1105470:intron 45.0%
GAGAGAAGAGAAGAGAGAGA+AGG + chr7_3:43959984-43960003 Msa1105470:intron 45.0%
GACAAACTACATGATGGCTG+AGG + chr7_3:43960142-43960161 Msa1105470:CDS 45.0%
AAACTACATGATGGCTGAGG+TGG + chr7_3:43960145-43960164 Msa1105470:CDS 45.0%
GATAGATGCTGATGCCAACA+AGG + chr7_3:43960187-43960206 Msa1105470:CDS 45.0%
! GTTTTGCAAGGAAAGCTTCC+AGG + chr7_3:43960278-43960297 Msa1105470:CDS 45.0%
CTCCCTATACTCACGAATCT+TGG - chr7_3:43960744-43960763 None:intergenic 45.0%
!! TGAGAAGTGCTGAATTCCCA+AGG + chr7_3:43960800-43960819 Msa1105470:intron 45.0%
TGCTCAAGGGACAATCTGAT+AGG + chr7_3:43960843-43960862 Msa1105470:intron 45.0%
AAGGGACAATCTGATAGGAG+TGG + chr7_3:43960848-43960867 Msa1105470:intron 45.0%
!! GCACTTGGTGTAAGTTTGGA+TGG + chr7_3:43960933-43960952 Msa1105470:intron 45.0%
!!! GATTTTGGTTGATGAGGTGC+AGG + chr7_3:43960991-43961010 Msa1105470:CDS 45.0%
! GCAGGTGATGATGAAGTGAT+TGG + chr7_3:43961037-43961056 Msa1105470:CDS 45.0%
AGTACGACTTGCAAGCCAAT+CGG - chr7_3:43961103-43961122 None:intergenic 45.0%
! GTCTGGATAGTTGGTGTAGA+AGG - chr7_3:43961254-43961273 None:intergenic 45.0%
TTAGAGTTGAAAGGGTGGTC+TGG - chr7_3:43961271-43961290 None:intergenic 45.0%
!!! ATTAAAAACATATTTTTATA+AGG + chr7_3:43959584-43959603 Msa1105470:intron 5.0%
GTGCATGTGCCCTGAAAAAG+AGG + chr7_3:43957246-43957265 Msa1105470:five_prime_UTR 50.0%
ACAAAGACTGCTCGCTCTCA+TGG + chr7_3:43958736-43958755 Msa1105470:CDS 50.0%
GAGAAACACTTGTGTGGACC+AGG + chr7_3:43959899-43959918 Msa1105470:intron 50.0%
!! ATGGATGAGGGTGTTGTTGC+AGG + chr7_3:43961019-43961038 Msa1105470:CDS 50.0%
! GGAGAGCATGTTTGATGCTC+AGG + chr7_3:43961153-43961172 Msa1105470:CDS 50.0%
TGTTTGATGCTCAGGATGCG+AGG + chr7_3:43961161-43961180 Msa1105470:CDS 50.0%
GAAAGGGTGGTCTGGATAGT+TGG - chr7_3:43961263-43961282 None:intergenic 50.0%
TGATGAGGTGCAGGCTGCAA+TGG + chr7_3:43961000-43961019 Msa1105470:CDS 55.0%
GTGCAGGCTGCAATGGATGA+GGG + chr7_3:43961007-43961026 Msa1105470:CDS 55.0%
CCAATCGGAGGAGCAGAATC+CGG - chr7_3:43961088-43961107 None:intergenic 55.0%
ACGACTTGCAAGCCAATCGG+AGG - chr7_3:43961100-43961119 None:intergenic 55.0%
GGTGCAGGCTGCAATGGATG+AGG + chr7_3:43961006-43961025 Msa1105470:CDS 60.0%
CCGGATTCTGCTCCTCCGAT+TGG + chr7_3:43961085-43961104 Msa1105470:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 43957209 43961336 43957209 ID=Msa1105470;Name=Msa1105470
chr7_3 mRNA 43957209 43961336 43957209 ID=Msa1105470-mRNA-1;Parent=Msa1105470;Name=Msa1105470-mRNA-1;_AED=0.20;_eAED=0.20;_QI=104|0.75|0.6|1|1|1|5|0|418
chr7_3 exon 43957209 43957429 43957209 ID=Msa1105470-mRNA-1:exon:9059;Parent=Msa1105470-mRNA-1
chr7_3 exon 43958097 43958309 43958097 ID=Msa1105470-mRNA-1:exon:9060;Parent=Msa1105470-mRNA-1
chr7_3 exon 43958649 43958804 43958649 ID=Msa1105470-mRNA-1:exon:9061;Parent=Msa1105470-mRNA-1
chr7_3 exon 43960113 43960505 43960113 ID=Msa1105470-mRNA-1:exon:9062;Parent=Msa1105470-mRNA-1
chr7_3 exon 43960959 43961336 43960959 ID=Msa1105470-mRNA-1:exon:9063;Parent=Msa1105470-mRNA-1
chr7_3 five_prime_UTR 43957209 43957312 43957209 ID=Msa1105470-mRNA-1:five_prime_utr;Parent=Msa1105470-mRNA-1
chr7_3 CDS 43957313 43957429 43957313 ID=Msa1105470-mRNA-1:cds;Parent=Msa1105470-mRNA-1
chr7_3 CDS 43958097 43958309 43958097 ID=Msa1105470-mRNA-1:cds;Parent=Msa1105470-mRNA-1
chr7_3 CDS 43958649 43958804 43958649 ID=Msa1105470-mRNA-1:cds;Parent=Msa1105470-mRNA-1
chr7_3 CDS 43960113 43960505 43960113 ID=Msa1105470-mRNA-1:cds;Parent=Msa1105470-mRNA-1
chr7_3 CDS 43960959 43961336 43960959 ID=Msa1105470-mRNA-1:cds;Parent=Msa1105470-mRNA-1
Gene Sequence

>Msa1105470

ATGGAAGGAATTAGTGTATTGAAGAAAAGTTCTAAAGGAAAGAAAGAAGATCTCTATCATGTTATTCATAAGGTTCCTTATGGTGATACTCCTTATGTCAAAGCCAAACATGCTCAGTTGGTGGATAAAGATCCAGAAGTTGCTATAGTGTACTTTTGGAAGGCAATCAATGCTGGAGACAAAGTGGATAGTGCTCTAAAGGATATGGCTGTTGTGATGAAGCAATTAGATAGAGCTGAAGAAGCTATTGAAGCTATCAAATCTTTTAGAGGTCTTTGCAACAAACATTCTCAAGAGTCACTTGATAATGTACTTCTTGATCTTTACAAGAAATGTGGAAGAATAGAGGAGCAAATTGAATTATTGAAAAGAAAGCTAAGACTTATCTACCAAGGTGAGGCCTTTAATGGAAGGACGACAAAGACTGCTCGCTCTCATGGCAAGAAGTTCCAAGTTTCTATCAAGCAAGAAACAGCAAGACTATTGGGAAACTTGGGTTGGGCCTACATGCAAAAGACAAACTACATGATGGCTGAGGTGGTTTTCAAGAAAGCACAAATGATAGATGCTGATGCCAACAAGGCTTTGAATTTAGCCTTATGCCTAATGAGACAATCTCGTTATGAGGAAGCCTATTTAATTCTTGAGCAAGTTTTGCAAGGAAAGCTTCCAGGTTCTGATGAAATCAAGTCCAGAAATAGAGCTGAAGAATTGCTTGTAGAATTGAATGCCAACTTGCCACAACCTAAGTTTATGGATGATTTAGGGCTTGATGATGACCTTTTGAAAGGAATTGATGGATTACTTAATGTTTGGAGTCCAACTAGATCAAGAAGACTTCCCATCTTTGAGGAAATATCTTCTTTTAGAGATCAATTGTGCTATGATCATGTTTGTGTTTCTGCTGGTGAGATTTTGGTTGATGAGGTGCAGGCTGCAATGGATGAGGGTGTTGTTGCAGGTGATGATGAAGTGATTGGTGAAGCTGAAAGTGAAGATGATGATCCGGATTCTGCTCCTCCGATTGGCTTGCAAGTCGTACTTGATTCCATAGCTGAGATGCGTATGTTTATGGAGAGCATGTTTGATGCTCAGGATGCGAGGCGTACAATGATTGAATCATTAATTCAGAGGATCGAAAACAACAATGCTTTCACCATGTCACCAAATACCTTCTACACCAACTATCCAGACCACCCTTTCAACTCTAACTTAAACCCAATGTTATGTACTTTGAATTTTATTGTGTCTACTTAA

Protein sequence

>Msa1105470

MEGISVLKKSSKGKKEDLYHVIHKVPYGDTPYVKAKHAQLVDKDPEVAIVYFWKAINAGDKVDSALKDMAVVMKQLDRAEEAIEAIKSFRGLCNKHSQESLDNVLLDLYKKCGRIEEQIELLKRKLRLIYQGEAFNGRTTKTARSHGKKFQVSIKQETARLLGNLGWAYMQKTNYMMAEVVFKKAQMIDADANKALNLALCLMRQSRYEEAYLILEQVLQGKLPGSDEIKSRNRAEELLVELNANLPQPKFMDDLGLDDDLLKGIDGLLNVWSPTRSRRLPIFEEISSFRDQLCYDHVCVSAGEILVDEVQAAMDEGVVAGDDEVIGEAESEDDDPDSAPPIGLQVVLDSIAEMRMFMESMFDAQDARRTMIESLIQRIENNNAFTMSPNTFYTNYPDHPFNSNLNPMLCTLNFIVST*