Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1148900 | KEH22820.1 | 91.186 | 295 | 1 | 2 | 1 | 270 | 1 | 295 | 0.0 | 535 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1148900 | sp|Q8GXU5|SDI1_ARATH | 57.877 | 292 | 91 | 5 | 9 | 270 | 17 | 306 | 8.47e-108 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1148900 | A0A396H0L5 | 91.186 | 295 | 1 | 2 | 1 | 270 | 18 | 312 | 0.0 | 535 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1021460 | Msa1148900 | 0.957560 | 2.020204e-115 | -8.615850e-47 |
| Msa1060220 | Msa1148900 | 0.850134 | 2.066454e-60 | -8.615850e-47 |
| Msa1105470 | Msa1148900 | 0.943546 | 9.907990e-103 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1148900 | MtrunA17_Chr7g0237621 | 91.186 | 295 | 1 | 2 | 1 | 270 | 18 | 312 | 0.0 | 535 |
| Msa1148900 | MtrunA17_Chr7g0237581 | 69.474 | 285 | 62 | 2 | 11 | 270 | 16 | 300 | 1.71e-142 | 402 |
| Msa1148900 | MtrunA17_Chr8g0371521 | 47.761 | 268 | 102 | 5 | 15 | 249 | 32 | 294 | 7.31e-73 | 230 |
| Msa1148900 | MtrunA17_Chr2g0292681 | 48.980 | 245 | 97 | 3 | 15 | 231 | 47 | 291 | 2.06e-66 | 217 |
| Msa1148900 | MtrunA17_Chr2g0292671 | 38.509 | 161 | 71 | 3 | 88 | 220 | 2 | 162 | 4.29e-25 | 99.0 |
| Msa1148900 | MtrunA17_Chr2g0292661 | 71.667 | 60 | 17 | 0 | 15 | 74 | 44 | 103 | 1.32e-24 | 94.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1148900 | AT5G48850.1 | 57.877 | 292 | 91 | 5 | 9 | 270 | 17 | 306 | 8.61e-109 | 317 |
| Msa1148900 | AT1G04770.1 | 51.568 | 287 | 101 | 7 | 19 | 270 | 20 | 303 | 4.06e-91 | 272 |
| Msa1148900 | AT3G51280.1 | 48.846 | 260 | 103 | 4 | 19 | 249 | 30 | 288 | 1.58e-71 | 226 |
| Msa1148900 | AT4G20900.2 | 47.347 | 245 | 96 | 4 | 10 | 223 | 42 | 284 | 1.03e-65 | 211 |
| Msa1148900 | AT4G20900.1 | 44.444 | 261 | 96 | 5 | 10 | 223 | 42 | 300 | 1.78e-61 | 201 |
| Msa1148900 | AT5G44330.1 | 46.606 | 221 | 90 | 3 | 24 | 216 | 49 | 269 | 1.20e-51 | 175 |
| Msa1148900 | AT5G22794.2 | 50.746 | 67 | 18 | 1 | 96 | 147 | 71 | 137 | 3.38e-13 | 67.8 |
Find 55 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAAGTTTATGGATGATTT+AGG | 0.095537 | 7_4:-29482280 | Msa1148900:CDS |
| CTTGCCACAACCTAAGTTTA+TGG | 0.146740 | 7_4:-29482290 | Msa1148900:CDS |
| CAATTCTTCAGCTCTATTTC+TGG | 0.147773 | 7_4:+29482333 | None:intergenic |
| CTTTGTCGTCCTTCCATTAA+AGG | 0.194578 | 7_4:+29483932 | None:intergenic |
| TGGGAGAGATTCAGTGAAAA+TGG | 0.247645 | 7_4:+29485441 | None:intergenic |
| CTAAGTTTATGGATGATTTA+GGG | 0.273109 | 7_4:-29482279 | Msa1148900:CDS |
| GTTATTCATAAGGTTCCTTA+TGG | 0.304411 | 7_4:-29485278 | Msa1148900:CDS |
| TACCAAGGTGAGGCCTTTAA+TGG | 0.310819 | 7_4:-29483945 | Msa1148900:CDS |
| AACTTGCTCAAGAATTAAAT+AGG | 0.338540 | 7_4:+29482393 | None:intergenic |
| TTGATGGATTACTTAATGTT+TGG | 0.342938 | 7_4:-29482231 | Msa1148900:CDS |
| AAGTTGCTATAGTGTACTTT+TGG | 0.357890 | 7_4:-29484535 | Msa1148900:CDS |
| AGTACCTACCTGAGCATGTT+TGG | 0.365922 | 7_4:+29485235 | None:intergenic |
| AAGTACACTATAGCAACTTC+TGG | 0.375170 | 7_4:+29484539 | None:intergenic |
| GGGAGAGATTCAGTGAAAAT+GGG | 0.383949 | 7_4:+29485442 | None:intergenic |
| GGATAGTGCTCTAAAGGATA+TGG | 0.385948 | 7_4:-29484486 | Msa1148900:CDS |
| GCATGTTTGGCTTTGACATA+AGG | 0.405107 | 7_4:+29485248 | None:intergenic |
| TCTCTATCATGTTATTCATA+AGG | 0.406833 | 7_4:-29485288 | Msa1148900:CDS |
| AGAAGATATTTCCTCAAAGA+TGG | 0.410475 | 7_4:+29482183 | None:intergenic |
| CATAACGAGATTGTCTCATT+AGG | 0.414447 | 7_4:+29482422 | None:intergenic |
| ATCCATCAATTCCTTTCAAA+AGG | 0.416312 | 7_4:+29482245 | None:intergenic |
| AAGAAGACTTCCCATCTTTG+AGG | 0.419105 | 7_4:-29482194 | Msa1148900:CDS |
| GGAAGTCTTCTTGATCTAGT+TGG | 0.437256 | 7_4:+29482205 | None:intergenic |
| GGCTAAATTCAAAGCCTTGT+TGG | 0.440956 | 7_4:+29482450 | None:intergenic |
| CAAAGTGGATAGTGCTCTAA+AGG | 0.448477 | 7_4:-29484492 | Msa1148900:CDS |
| GCAAGAAACAGCAAGACTAT+TGG | 0.460999 | 7_4:-29483868 | Msa1148900:intron |
| TCTCTCCCATCTTCATCATA+AGG | 0.470766 | 7_4:-29485427 | Msa1148900:five_prime_UTR |
| TTTCTTGCTTGATAGAAACT+TGG | 0.480530 | 7_4:+29483883 | None:intergenic |
| CCTAAATCATCCATAAACTT+AGG | 0.481001 | 7_4:+29482280 | None:intergenic |
| GTGACATATACAGAGAGAAA+TGG | 0.484017 | 7_4:-29485357 | Msa1148900:exon |
| AGATTGTCTCATTAGGCATA+AGG | 0.484330 | 7_4:+29482429 | None:intergenic |
| TGTCAAAGCCAAACATGCTC+AGG | 0.496739 | 7_4:-29485243 | Msa1148900:intron |
| CATGCACCTTATGATGAAGA+TGG | 0.506907 | 7_4:+29485421 | None:intergenic |
| ACAAAGACTGCTCGCTCTCA+TGG | 0.512305 | 7_4:-29483915 | Msa1148900:CDS |
| AATGAGACAATCTCGTTATG+AGG | 0.514397 | 7_4:-29482419 | Msa1148900:CDS |
| GAAGATATTTCCTCAAAGAT+GGG | 0.535613 | 7_4:+29482184 | None:intergenic |
| TGTACTTCTTGATCTTTACA+AGG | 0.536497 | 7_4:-29484363 | Msa1148900:intron |
| GACTTGATTTCATCAGAACC+TGG | 0.545316 | 7_4:+29482355 | None:intergenic |
| AAACTTAGGTTGTGGCAAGT+TGG | 0.547589 | 7_4:+29482294 | None:intergenic |
| GGAGAGATTCAGTGAAAATG+GGG | 0.548864 | 7_4:+29485443 | None:intergenic |
| ACATAAGGAGTATCACCATA+AGG | 0.554287 | 7_4:+29485263 | None:intergenic |
| TCATCCATAAACTTAGGTTG+TGG | 0.560954 | 7_4:+29482286 | None:intergenic |
| GTATTGAAGAAAAGTTCTAA+AGG | 0.565096 | 7_4:-29485323 | Msa1148900:CDS |
| ATGCACCTTATGATGAAGAT+GGG | 0.587704 | 7_4:+29485422 | None:intergenic |
| AAACTACATGATGGCTGAGG+TGG | 0.597629 | 7_4:-29482506 | Msa1148900:CDS |
| GCAAAAGACAAACTACATGA+TGG | 0.600357 | 7_4:-29482515 | Msa1148900:intron |
| TTCCATTAAAGGCCTCACCT+TGG | 0.605669 | 7_4:+29483943 | None:intergenic |
| GATAGATGCTGATGCCAACA+AGG | 0.611933 | 7_4:-29482464 | Msa1148900:CDS |
| AAGGTGAGGCCTTTAATGGA+AGG | 0.621345 | 7_4:-29483941 | Msa1148900:CDS |
| AATCAATGCTGGAGACAAAG+TGG | 0.650220 | 7_4:-29484507 | Msa1148900:CDS |
| CATATACAGAGAGAAATGGA+AGG | 0.651435 | 7_4:-29485353 | Msa1148900:exon |
| GACAAACTACATGATGGCTG+AGG | 0.652612 | 7_4:-29482509 | Msa1148900:CDS |
| AAGCTAAGACTTATCTACCA+AGG | 0.663143 | 7_4:-29483960 | Msa1148900:CDS |
| AAGACTTATCTACCAAGGTG+AGG | 0.669025 | 7_4:-29483955 | Msa1148900:CDS |
| AGAGATTCAGTGAAAATGGG+GGG | 0.681806 | 7_4:+29485445 | None:intergenic |
| GAGAGATTCAGTGAAAATGG+GGG | 0.712050 | 7_4:+29485444 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATTTTATTTTAAAATT+TGG | + | chr7_4:29484622-29484641 | None:intergenic | 0.0% |
| !!! | AATTTTAAAATAAAATAATA+TGG | - | chr7_4:29484622-29484641 | Msa1148900:intron | 0.0% |
| !! | GAATAACTTAAAAATAAAAA+AGG | + | chr7_4:29482853-29482872 | None:intergenic | 10.0% |
| !! | CTATATAATTAGTAAATTAT+CGG | - | chr7_4:29483335-29483354 | Msa1148900:intron | 10.0% |
| !!! | TTTAAATTTTTTAGTTTCAT+GGG | + | chr7_4:29483880-29483899 | None:intergenic | 10.0% |
| !!! | TTTTAAATTTTTTAGTTTCA+TGG | + | chr7_4:29483881-29483900 | None:intergenic | 10.0% |
| !! | AAATTTACTTATATATGAAT+TGG | - | chr7_4:29484329-29484348 | Msa1148900:intron | 10.0% |
| !! | AAAATCAAATACTATATAAA+AGG | + | chr7_4:29484356-29484375 | None:intergenic | 10.0% |
| !!! | GTTTATCAATATTTTTTTAA+AGG | + | chr7_4:29484470-29484489 | None:intergenic | 10.0% |
| !!! | TTTGTAAAAATGATTATTTT+TGG | - | chr7_4:29484796-29484815 | Msa1148900:intron | 10.0% |
| !!! | TTGTAAAAATGATTATTTTT+GGG | - | chr7_4:29484797-29484816 | Msa1148900:intron | 10.0% |
| !! | ATTTAGAGATCAAATTAAAA+GGG | + | chr7_4:29482481-29482500 | None:intergenic | 15.0% |
| !! | AATTTAGAGATCAAATTAAA+AGG | + | chr7_4:29482482-29482501 | None:intergenic | 15.0% |
| !!! | AATATTTTTGGTACAAAATT+TGG | + | chr7_4:29482715-29482734 | None:intergenic | 15.0% |
| !!! | TTCAAAAAGACAAATATTTT+TGG | + | chr7_4:29482727-29482746 | None:intergenic | 15.0% |
| !! | ATTTACACAAAAACTAAATT+AGG | + | chr7_4:29483576-29483595 | None:intergenic | 15.0% |
| !! | TTATATTGTTCAAATATTAC+CGG | + | chr7_4:29484141-29484160 | None:intergenic | 15.0% |
| !!! | ATATATAAGTAAATTTTGCA+AGG | + | chr7_4:29484325-29484344 | None:intergenic | 15.0% |
| !! | TAAATAAATATTACAACATG+TGG | - | chr7_4:29484405-29484424 | Msa1148900:CDS | 15.0% |
| !!! | AAATTTGTTCTTATAGAAAT+TGG | + | chr7_4:29484436-29484455 | None:intergenic | 15.0% |
| !!! | GAAATACAAAAAATTGTTTT+AGG | + | chr7_4:29484648-29484667 | None:intergenic | 15.0% |
| !!! | CAAATAAATATTTTTACAAG+AGG | - | chr7_4:29484680-29484699 | Msa1148900:intron | 15.0% |
| !! | TGACTTTAAATTGATGTATA+TGG | - | chr7_4:29482556-29482575 | Msa1148900:intron | 20.0% |
| !!! | TAATTTACTATTACCTTTTC+AGG | - | chr7_4:29482598-29482617 | Msa1148900:intron | 20.0% |
| !!! | GAATCATTTTGCTTATATTT+TGG | - | chr7_4:29482744-29482763 | Msa1148900:intron | 20.0% |
| !!! | ATTTTGCTTATATTTTGGTA+CGG | - | chr7_4:29482749-29482768 | Msa1148900:intron | 20.0% |
| !!! | TTCTACTTTTTTACATTCTT+TGG | - | chr7_4:29482887-29482906 | Msa1148900:intron | 20.0% |
| !! | AATATAATGAAACACATGTT+TGG | + | chr7_4:29483269-29483288 | None:intergenic | 20.0% |
| !! | GATGTTCAATTATCATATTA+TGG | - | chr7_4:29483298-29483317 | Msa1148900:intron | 20.0% |
| !! | TATATTGTTCAAATATTACC+GGG | + | chr7_4:29484140-29484159 | None:intergenic | 20.0% |
| !! | AAAGTAAAAATATTCGTACA+TGG | + | chr7_4:29484250-29484269 | None:intergenic | 20.0% |
| !! | CAAAATGTAGTATATTTACA+AGG | + | chr7_4:29484277-29484296 | None:intergenic | 20.0% |
| !!! | AATTTTTTTCTTCAACACAA+TGG | - | chr7_4:29484748-29484767 | Msa1148900:intron | 20.0% |
| !!! | AGATTTTCTCTTTTATATCT+AGG | - | chr7_4:29485008-29485027 | Msa1148900:intron | 20.0% |
| !! | GTATTGAAGAAAAGTTCTAA+AGG | - | chr7_4:29482278-29482297 | Msa1148900:CDS | 25.0% |
| ! | TCTCTATCATGTTATTCATA+AGG | - | chr7_4:29482313-29482332 | Msa1148900:CDS | 25.0% |
| ! | CAAATTAAAAGGGATAAAGA+TGG | + | chr7_4:29482471-29482490 | None:intergenic | 25.0% |
| ! | TATGTTATATTGATCAGTTC+TGG | - | chr7_4:29482503-29482522 | Msa1148900:CDS | 25.0% |
| ! | TAAGAAAGACAGTGTATAAT+AGG | + | chr7_4:29482785-29482804 | None:intergenic | 25.0% |
| ! | ACACCTTTCATATAAAATGT+TGG | - | chr7_4:29483524-29483543 | Msa1148900:intron | 25.0% |
| !! | CAACCAACATTTTATATGAA+AGG | + | chr7_4:29483530-29483549 | None:intergenic | 25.0% |
| !! | TTTTGTGTAAATCAGAAATG+TGG | - | chr7_4:29483584-29483603 | Msa1148900:intron | 25.0% |
| ! | ATTAAACCAAGAGAAATACT+TGG | - | chr7_4:29483817-29483836 | Msa1148900:intron | 25.0% |
| ! | AACACTAAACATTACATGTT+AGG | - | chr7_4:29483848-29483867 | Msa1148900:intron | 25.0% |
| ! | CTTGTATGATCTATATTGTA+GGG | + | chr7_4:29484173-29484192 | None:intergenic | 25.0% |
| ! | CTACAATATAGATCATACAA+GGG | - | chr7_4:29484172-29484191 | Msa1148900:intron | 25.0% |
| ! | ATAAAAGAGAAAATCTTGTG+TGG | + | chr7_4:29485004-29485023 | None:intergenic | 25.0% |
| !! | AACACATTGATTGATTGTTT+AGG | - | chr7_4:29485041-29485060 | Msa1148900:intron | 25.0% |
| !! | ACACATTGATTGATTGTTTA+GGG | - | chr7_4:29485042-29485061 | Msa1148900:intron | 25.0% |
| !! | AACTTGCTCAAGAATTAAAT+AGG | + | chr7_4:29485211-29485230 | None:intergenic | 25.0% |
| ! | CTAAGTTTATGGATGATTTA+GGG | - | chr7_4:29485322-29485341 | Msa1148900:CDS | 25.0% |
| !!! | TTGATGGATTACTTAATGTT+TGG | - | chr7_4:29485370-29485389 | Msa1148900:five_prime_UTR | 25.0% |
| !!! | ATCTTCTTTTAGAGATCAAT+TGG | - | chr7_4:29485434-29485453 | Msa1148900:five_prime_UTR | 25.0% |
| AAAAAGAGGAGAAACAGAAA+GGG | - | chr7_4:29482210-29482229 | Msa1148900:CDS | 30.0% | |
| GTTATTCATAAGGTTCCTTA+TGG | - | chr7_4:29482323-29482342 | Msa1148900:CDS | 30.0% | |
| !! | TTAATTTGTCACTCCTGAAA+AGG | + | chr7_4:29482614-29482633 | None:intergenic | 30.0% |
| TGCCTGTATTCTGTTATAAA+GGG | + | chr7_4:29482658-29482677 | None:intergenic | 30.0% | |
| ATTCCTTGAATCTGAATTCA+AGG | - | chr7_4:29482807-29482826 | Msa1148900:intron | 30.0% | |
| AATCCTTGAATTCAGATTCA+AGG | + | chr7_4:29482813-29482832 | None:intergenic | 30.0% | |
| TCAATGTGTATGAAATCAGT+TGG | - | chr7_4:29483028-29483047 | Msa1148900:intron | 30.0% | |
| ! | AAGTTGCTATAGTGTACTTT+TGG | - | chr7_4:29483066-29483085 | Msa1148900:intron | 30.0% |
| ! | GAAGCTATCAAATCTTTTAG+AGG | - | chr7_4:29483179-29483198 | Msa1148900:intron | 30.0% |
| TGTACTTCTTGATCTTTACA+AGG | - | chr7_4:29483238-29483257 | Msa1148900:intron | 30.0% | |
| ACAGAACATGATATTGACAT+TGG | - | chr7_4:29483419-29483438 | Msa1148900:intron | 30.0% | |
| TTTCTTGCTTGATAGAAACT+TGG | + | chr7_4:29483721-29483740 | None:intergenic | 30.0% | |
| CCTTGTATGATCTATATTGT+AGG | + | chr7_4:29484174-29484193 | None:intergenic | 30.0% | |
| CCTACAATATAGATCATACA+AGG | - | chr7_4:29484171-29484190 | Msa1148900:intron | 30.0% | |
| !!! | GCTTTGCTTTTGATTTTCAT+TGG | + | chr7_4:29484492-29484511 | None:intergenic | 30.0% |
| ATGAAAATCAAAAGCAAAGC+AGG | - | chr7_4:29484492-29484511 | Msa1148900:CDS | 30.0% | |
| ATTGATTGTTTAGGGAAACT+TGG | - | chr7_4:29485050-29485069 | Msa1148900:intron | 30.0% | |
| TTGATTGTTTAGGGAAACTT+GGG | - | chr7_4:29485051-29485070 | Msa1148900:intron | 30.0% | |
| CCTAAATCATCCATAAACTT+AGG | + | chr7_4:29485324-29485343 | None:intergenic | 30.0% | |
| CCTAAGTTTATGGATGATTT+AGG | - | chr7_4:29485321-29485340 | Msa1148900:CDS | 30.0% | |
| ATCCATCAATTCCTTTCAAA+AGG | + | chr7_4:29485359-29485378 | None:intergenic | 30.0% | |
| GAAGATATTTCCTCAAAGAT+GGG | + | chr7_4:29485420-29485439 | None:intergenic | 30.0% | |
| AGAAGATATTTCCTCAAAGA+TGG | + | chr7_4:29485421-29485440 | None:intergenic | 30.0% | |
| ATGCACCTTATGATGAAGAT+GGG | + | chr7_4:29482182-29482201 | None:intergenic | 35.0% | |
| !! | TCTGTTTCTCCTCTTTTTCA+GGG | + | chr7_4:29482208-29482227 | None:intergenic | 35.0% |
| !! | TTCTGTTTCTCCTCTTTTTC+AGG | + | chr7_4:29482209-29482228 | None:intergenic | 35.0% |
| GAAAAAGAGGAGAAACAGAA+AGG | - | chr7_4:29482209-29482228 | Msa1148900:CDS | 35.0% | |
| GTGACATATACAGAGAGAAA+TGG | - | chr7_4:29482244-29482263 | Msa1148900:CDS | 35.0% | |
| CATATACAGAGAGAAATGGA+AGG | - | chr7_4:29482248-29482267 | Msa1148900:CDS | 35.0% | |
| !! | ACATAAGGAGTATCACCATA+AGG | + | chr7_4:29482341-29482360 | None:intergenic | 35.0% |
| CTCCCTTTATAACAGAATAC+AGG | - | chr7_4:29482653-29482672 | Msa1148900:intron | 35.0% | |
| CTGCCTGTATTCTGTTATAA+AGG | + | chr7_4:29482659-29482678 | None:intergenic | 35.0% | |
| AACAGAATACAGGCAGTAAA+AGG | - | chr7_4:29482663-29482682 | Msa1148900:intron | 35.0% | |
| ATGTGTATGAAATCAGTTGG+TGG | - | chr7_4:29483031-29483050 | Msa1148900:intron | 35.0% | |
| AAGTACACTATAGCAACTTC+TGG | + | chr7_4:29483065-29483084 | None:intergenic | 35.0% | |
| ! | TGCTATAGTGTACTTTTGGA+AGG | - | chr7_4:29483070-29483089 | Msa1148900:intron | 35.0% |
| !! | CGGTCTATGTTGTTTCATAT+TGG | - | chr7_4:29483355-29483374 | Msa1148900:intron | 35.0% |
| ATCATGTTCTGTGTCTGTAT+CGG | + | chr7_4:29483411-29483430 | None:intergenic | 35.0% | |
| TCAGAAATGTGGAAGAATAG+AGG | - | chr7_4:29483595-29483614 | Msa1148900:intron | 35.0% | |
| AAGCTAAGACTTATCTACCA+AGG | - | chr7_4:29483641-29483660 | Msa1148900:intron | 35.0% | |
| ACCAAGAGAAATACTTGGTT+AGG | - | chr7_4:29483822-29483841 | Msa1148900:intron | 35.0% | |
| !!! | TGACACTATTGTTTTAGTCC+CGG | - | chr7_4:29484119-29484138 | Msa1148900:intron | 35.0% |
| CAGGAAAAAAACAGTATTGC+AGG | + | chr7_4:29484220-29484239 | None:intergenic | 35.0% | |
| CTTTATCTCACTCATATTGG+AGG | + | chr7_4:29484382-29484401 | None:intergenic | 35.0% | |
| CTCCAATATGAGTGAGATAA+AGG | - | chr7_4:29484380-29484399 | Msa1148900:CDS | 35.0% | |
| GTCCTTTATCTCACTCATAT+TGG | + | chr7_4:29484385-29484404 | None:intergenic | 35.0% | |
| TATATCGAGAAACACTTGTG+TGG | - | chr7_4:29484843-29484862 | Msa1148900:intron | 35.0% | |
| TGTGACCAAACCAAAATTCT+TGG | + | chr7_4:29484971-29484990 | None:intergenic | 35.0% | |
| AAGAGAGAAGAGAGAGAAAA+TGG | - | chr7_4:29484907-29484926 | Msa1148900:intron | 35.0% | |
| TGTGACCAAACCAAAATTCT+TGG | - | chr7_4:29484971-29484990 | Msa1148900:intron | 35.0% | |
| !!! | AAGGACCAAGAATTTTGGTT+TGG | + | chr7_4:29484979-29484998 | None:intergenic | 35.0% |
| !! | GTAGTTTGTCTTTTGCATGT+AGG | + | chr7_4:29485082-29485101 | None:intergenic | 35.0% |
| GCAAAAGACAAACTACATGA+TGG | - | chr7_4:29485086-29485105 | Msa1148900:intron | 35.0% | |
| AGATTGTCTCATTAGGCATA+AGG | + | chr7_4:29485175-29485194 | None:intergenic | 35.0% | |
| CATAACGAGATTGTCTCATT+AGG | + | chr7_4:29485182-29485201 | None:intergenic | 35.0% | |
| AATGAGACAATCTCGTTATG+AGG | - | chr7_4:29485182-29485201 | Msa1148900:intron | 35.0% | |
| ! | ATTCTTGAGCAAGTTTTGCA+AGG | - | chr7_4:29485216-29485235 | Msa1148900:intron | 35.0% |
| CAATTCTTCAGCTCTATTTC+TGG | + | chr7_4:29485271-29485290 | None:intergenic | 35.0% | |
| ! | TCATCCATAAACTTAGGTTG+TGG | + | chr7_4:29485318-29485337 | None:intergenic | 35.0% |
| !!! | CTTGATGATGACCTTTTGAA+AGG | - | chr7_4:29485345-29485364 | Msa1148900:exon | 35.0% |
| !! | GACCTTTTGAAAGGAATTGA+TGG | - | chr7_4:29485354-29485373 | Msa1148900:exon | 35.0% |
| GGGAGAGATTCAGTGAAAAT+GGG | + | chr7_4:29482162-29482181 | None:intergenic | 40.0% | |
| TGGGAGAGATTCAGTGAAAA+TGG | + | chr7_4:29482163-29482182 | None:intergenic | 40.0% | |
| TCTCTCCCATCTTCATCATA+AGG | - | chr7_4:29482174-29482193 | Msa1148900:CDS | 40.0% | |
| CATGCACCTTATGATGAAGA+TGG | + | chr7_4:29482183-29482202 | None:intergenic | 40.0% | |
| !! | GCATGTTTGGCTTTGACATA+AGG | + | chr7_4:29482356-29482375 | None:intergenic | 40.0% |
| !!! | GCTTATATTTTGGTACGGAG+AGG | - | chr7_4:29482754-29482773 | Msa1148900:intron | 40.0% |
| !! | TTTTGGAAGGCAATCAATGC+TGG | - | chr7_4:29483083-29483102 | Msa1148900:intron | 40.0% |
| AATCAATGCTGGAGACAAAG+TGG | - | chr7_4:29483094-29483113 | Msa1148900:intron | 40.0% | |
| CAAAGTGGATAGTGCTCTAA+AGG | - | chr7_4:29483109-29483128 | Msa1148900:intron | 40.0% | |
| !! | GGATAGTGCTCTAAAGGATA+TGG | - | chr7_4:29483115-29483134 | Msa1148900:intron | 40.0% |
| ACCTTGTATGACATGACACA+TGG | - | chr7_4:29483488-29483507 | Msa1148900:intron | 40.0% | |
| CATGACACATGGCTAAAACT+CGG | - | chr7_4:29483499-29483518 | Msa1148900:intron | 40.0% | |
| AAGACTTATCTACCAAGGTG+AGG | - | chr7_4:29483646-29483665 | Msa1148900:intron | 40.0% | |
| CTTTGTCGTCCTTCCATTAA+AGG | + | chr7_4:29483672-29483691 | None:intergenic | 40.0% | |
| GCAAGAAACAGCAAGACTAT+TGG | - | chr7_4:29483733-29483752 | Msa1148900:intron | 40.0% | |
| GCCTAACCAAGTATTTCTCT+TGG | + | chr7_4:29483826-29483845 | None:intergenic | 40.0% | |
| TGTGTGAGAAAGTCTTCTGT+AGG | + | chr7_4:29484007-29484026 | None:intergenic | 40.0% | |
| ! | ATTCGTACATGGACTAAAGC+AGG | + | chr7_4:29484239-29484258 | None:intergenic | 40.0% |
| GGCTACAAGCAAAAACAAAG+TGG | - | chr7_4:29484701-29484720 | Msa1148900:intron | 40.0% | |
| CAAACCAAAATTCTTGGTCC+TGG | + | chr7_4:29484977-29484996 | None:intergenic | 40.0% | |
| !!! | CAGGACCAAGAATTTTGGTT+TGG | - | chr7_4:29484868-29484887 | Msa1148900:intron | 40.0% |
| ! | TGGACAAGGACCAAGAATTT+TGG | + | chr7_4:29484984-29485003 | None:intergenic | 40.0% |
| GAGAAAATCTTGTGTGGACA+AGG | + | chr7_4:29484998-29485017 | None:intergenic | 40.0% | |
| TTGTTTAGGGAAACTTGGGT+TGG | - | chr7_4:29485055-29485074 | Msa1148900:intron | 40.0% | |
| TGTTTAGGGAAACTTGGGTT+GGG | - | chr7_4:29485056-29485075 | Msa1148900:intron | 40.0% | |
| ! | GGCTAAATTCAAAGCCTTGT+TGG | + | chr7_4:29485154-29485173 | None:intergenic | 40.0% |
| GACTTGATTTCATCAGAACC+TGG | + | chr7_4:29485249-29485268 | None:intergenic | 40.0% | |
| ! | AAACTTAGGTTGTGGCAAGT+TGG | + | chr7_4:29485310-29485329 | None:intergenic | 40.0% |
| CTTGCCACAACCTAAGTTTA+TGG | - | chr7_4:29485311-29485330 | Msa1148900:CDS | 40.0% | |
| GGAAGTCTTCTTGATCTAGT+TGG | + | chr7_4:29485399-29485418 | None:intergenic | 40.0% | |
| AAGAAGACTTCCCATCTTTG+AGG | - | chr7_4:29485407-29485426 | Msa1148900:five_prime_UTR | 40.0% | |
| TGTCAAAGCCAAACATGCTC+AGG | - | chr7_4:29482358-29482377 | Msa1148900:CDS | 45.0% | |
| AAAGCCAAACATGCTCAGGT+AGG | - | chr7_4:29482362-29482381 | Msa1148900:CDS | 45.0% | |
| AGTACCTACCTGAGCATGTT+TGG | + | chr7_4:29482369-29482388 | None:intergenic | 45.0% | |
| GCCATGTGTCATGTCATACA+AGG | + | chr7_4:29483492-29483511 | None:intergenic | 45.0% | |
| TACCAAGGTGAGGCCTTTAA+TGG | - | chr7_4:29483656-29483675 | Msa1148900:intron | 45.0% | |
| TTCCATTAAAGGCCTCACCT+TGG | + | chr7_4:29483661-29483680 | None:intergenic | 45.0% | |
| AAGGTGAGGCCTTTAATGGA+AGG | - | chr7_4:29483660-29483679 | Msa1148900:intron | 45.0% | |
| GCAAAGCAGGTATATTTGCG+AGG | - | chr7_4:29484505-29484524 | Msa1148900:CDS | 45.0% | |
| ! | TGGACCAGGACCAAGAATTT+TGG | - | chr7_4:29484863-29484882 | Msa1148900:intron | 45.0% |
| GAGAGAAGAGAAGAGAGAGA+AGG | - | chr7_4:29484934-29484953 | Msa1148900:intron | 45.0% | |
| GACAAACTACATGATGGCTG+AGG | - | chr7_4:29485092-29485111 | Msa1148900:intron | 45.0% | |
| AAACTACATGATGGCTGAGG+TGG | - | chr7_4:29485095-29485114 | Msa1148900:intron | 45.0% | |
| GATAGATGCTGATGCCAACA+AGG | - | chr7_4:29485137-29485156 | Msa1148900:intron | 45.0% | |
| ! | GTTTTGCAAGGAAAGCTTCC+AGG | - | chr7_4:29485228-29485247 | Msa1148900:intron | 45.0% |
| !!! | ATTAAAAACATATTTTTATA+AGG | - | chr7_4:29484534-29484553 | Msa1148900:CDS | 5.0% |
| GTGCATGTGCCCTGAAAAAG+AGG | - | chr7_4:29482196-29482215 | Msa1148900:CDS | 50.0% | |
| ACAAAGACTGCTCGCTCTCA+TGG | - | chr7_4:29483686-29483705 | Msa1148900:intron | 50.0% | |
| GAGAAACACTTGTGTGGACC+AGG | - | chr7_4:29484849-29484868 | Msa1148900:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 29482159 | 29485464 | 29482159 | ID=Msa1148900;Name=Msa1148900 |
| chr7_4 | mRNA | 29482159 | 29485464 | 29482159 | ID=Msa1148900-mRNA-1;Parent=Msa1148900;Name=Msa1148900-mRNA-1;_AED=0.25;_eAED=0.25;_QI=104|0.33|0.5|1|0.33|0.75|4|0|270 |
| chr7_4 | exon | 29482159 | 29482530 | 29482159 | ID=Msa1148900-mRNA-1:exon:7260;Parent=Msa1148900-mRNA-1 |
| chr7_4 | exon | 29483869 | 29483979 | 29483869 | ID=Msa1148900-mRNA-1:exon:7259;Parent=Msa1148900-mRNA-1 |
| chr7_4 | exon | 29484364 | 29484576 | 29484364 | ID=Msa1148900-mRNA-1:exon:7258;Parent=Msa1148900-mRNA-1 |
| chr7_4 | exon | 29485244 | 29485464 | 29485244 | ID=Msa1148900-mRNA-1:exon:7257;Parent=Msa1148900-mRNA-1 |
| chr7_4 | five_prime_UTR | 29485361 | 29485464 | 29485361 | ID=Msa1148900-mRNA-1:five_prime_utr;Parent=Msa1148900-mRNA-1 |
| chr7_4 | CDS | 29485244 | 29485360 | 29485244 | ID=Msa1148900-mRNA-1:cds;Parent=Msa1148900-mRNA-1 |
| chr7_4 | CDS | 29484364 | 29484576 | 29484364 | ID=Msa1148900-mRNA-1:cds;Parent=Msa1148900-mRNA-1 |
| chr7_4 | CDS | 29483869 | 29483979 | 29483869 | ID=Msa1148900-mRNA-1:cds;Parent=Msa1148900-mRNA-1 |
| chr7_4 | CDS | 29482159 | 29482530 | 29482159 | ID=Msa1148900-mRNA-1:cds;Parent=Msa1148900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
