Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1024230 | XP_003623264.1 | 56.239 | 585 | 197 | 13 | 1 | 572 | 1 | 539 | 0.0 | 579 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1024230 | sp|Q9SD53|Y3720_ARATH | 34.615 | 156 | 91 | 4 | 27 | 179 | 44 | 191 | 9.18e-13 | 74.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1024230 | G7KRE0 | 56.239 | 585 | 197 | 13 | 1 | 572 | 1 | 539 | 0.0 | 579 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0743810 | Msa1024230 | 0.800260 | 1.566477e-48 | -8.615850e-47 |
| Msa0989060 | Msa1024230 | 0.801514 | 8.686369e-49 | -8.615850e-47 |
| Msa1016280 | Msa1024230 | 0.804688 | 1.915738e-49 | -8.615850e-47 |
| Msa1024230 | Msa1025370 | 0.805773 | 1.135438e-49 | -8.615850e-47 |
| Msa1024230 | Msa1044830 | 0.800074 | 1.709368e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1024230 | MtrunA17_Chr7g0242071 | 56.239 | 585 | 197 | 13 | 1 | 572 | 1 | 539 | 0.0 | 579 |
| Msa1024230 | MtrunA17_Chr7g0242151 | 61.140 | 579 | 184 | 13 | 1 | 572 | 1 | 545 | 0.0 | 542 |
| Msa1024230 | MtrunA17_Chr7g0242181 | 50.344 | 582 | 209 | 15 | 10 | 572 | 17 | 537 | 3.89e-169 | 491 |
| Msa1024230 | MtrunA17_Chr7g0242091 | 50.924 | 595 | 212 | 19 | 1 | 572 | 26 | 563 | 3.07e-168 | 489 |
| Msa1024230 | MtrunA17_Chr7g0241951 | 47.227 | 595 | 204 | 18 | 10 | 572 | 8 | 524 | 5.20e-150 | 441 |
| Msa1024230 | MtrunA17_Chr7g0241791 | 47.611 | 565 | 169 | 15 | 27 | 572 | 20 | 476 | 2.35e-147 | 433 |
| Msa1024230 | MtrunA17_Chr7g0242011 | 43.674 | 577 | 240 | 15 | 10 | 572 | 44 | 549 | 2.40e-138 | 412 |
| Msa1024230 | MtrunA17_Chr7g0242051 | 43.328 | 577 | 242 | 14 | 1 | 558 | 1 | 511 | 1.38e-133 | 399 |
| Msa1024230 | MtrunA17_Chr7g0242101 | 41.325 | 634 | 262 | 18 | 9 | 572 | 4 | 597 | 7.17e-128 | 387 |
| Msa1024230 | MtrunA17_Chr7g0242001 | 53.311 | 302 | 71 | 7 | 278 | 572 | 6 | 244 | 5.20e-85 | 264 |
| Msa1024230 | MtrunA17_Chr7g0241971 | 49.029 | 206 | 97 | 4 | 369 | 572 | 166 | 365 | 1.24e-54 | 189 |
| Msa1024230 | MtrunA17_Chr7g0241971 | 50.955 | 157 | 68 | 4 | 14 | 161 | 1 | 157 | 1.01e-34 | 134 |
| Msa1024230 | MtrunA17_Chr1g0170351 | 27.228 | 606 | 264 | 25 | 7 | 569 | 5 | 476 | 6.63e-41 | 154 |
| Msa1024230 | MtrunA17_Chr3g0091831 | 46.703 | 182 | 91 | 3 | 10 | 190 | 24 | 200 | 6.45e-39 | 149 |
| Msa1024230 | MtrunA17_Chr3g0091831 | 35.455 | 220 | 115 | 8 | 356 | 571 | 284 | 480 | 7.29e-25 | 108 |
| Msa1024230 | MtrunA17_Chr3g0107251 | 47.727 | 176 | 90 | 2 | 10 | 184 | 11 | 185 | 6.26e-38 | 146 |
| Msa1024230 | MtrunA17_Chr3g0107251 | 37.561 | 205 | 107 | 6 | 374 | 572 | 285 | 474 | 2.63e-30 | 124 |
| Msa1024230 | MtrunA17_Chr7g0242121 | 57.937 | 126 | 47 | 3 | 340 | 464 | 7 | 127 | 2.12e-36 | 132 |
| Msa1024230 | MtrunA17_Chr7g0242131 | 57.265 | 117 | 46 | 2 | 26 | 138 | 14 | 130 | 1.74e-33 | 124 |
| Msa1024230 | MtrunA17_Chr5g0439661 | 37.267 | 161 | 84 | 5 | 31 | 181 | 30 | 183 | 2.00e-20 | 89.7 |
| Msa1024230 | MtrunA17_Chr4g0006051 | 33.523 | 176 | 86 | 6 | 6 | 169 | 5 | 161 | 1.27e-17 | 80.5 |
| Msa1024230 | MtrunA17_Chr3g0118601 | 34.225 | 187 | 102 | 6 | 14 | 196 | 25 | 194 | 1.72e-17 | 85.5 |
| Msa1024230 | MtrunA17_Chr7g0265891 | 35.443 | 158 | 84 | 4 | 28 | 179 | 50 | 195 | 6.05e-16 | 80.5 |
| Msa1024230 | MtrunA17_Chr8g0335011 | 23.633 | 567 | 299 | 26 | 26 | 566 | 33 | 491 | 9.10e-16 | 80.1 |
| Msa1024230 | MtrunA17_Chr6g0452551 | 30.726 | 179 | 108 | 4 | 11 | 186 | 7 | 172 | 1.59e-15 | 79.0 |
| Msa1024230 | MtrunA17_Chr6g0452531 | 33.951 | 162 | 91 | 4 | 29 | 187 | 25 | 173 | 2.58e-15 | 78.2 |
| Msa1024230 | MtrunA17_Chr6g0452601 | 29.843 | 191 | 114 | 4 | 11 | 194 | 7 | 184 | 2.81e-15 | 78.2 |
| Msa1024230 | MtrunA17_Chr8g0334951 | 29.448 | 163 | 102 | 5 | 29 | 186 | 29 | 183 | 5.37e-14 | 74.3 |
| Msa1024230 | MtrunA17_Chr5g0439641 | 29.557 | 203 | 125 | 6 | 10 | 199 | 7 | 204 | 5.70e-14 | 74.3 |
| Msa1024230 | MtrunA17_Chr4g0006091 | 38.596 | 114 | 46 | 3 | 383 | 496 | 189 | 278 | 2.57e-13 | 71.6 |
| Msa1024230 | MtrunA17_Chr6g0452501 | 28.814 | 177 | 113 | 3 | 11 | 187 | 7 | 170 | 2.63e-13 | 72.0 |
| Msa1024230 | MtrunA17_Chr6g0452561 | 31.034 | 174 | 103 | 4 | 11 | 179 | 7 | 168 | 5.15e-13 | 71.2 |
| Msa1024230 | MtrunA17_Chr6g0452611 | 32.075 | 159 | 97 | 3 | 29 | 187 | 24 | 171 | 6.01e-13 | 70.9 |
| Msa1024230 | MtrunA17_Chr8g0335061 | 27.778 | 162 | 105 | 4 | 29 | 186 | 27 | 180 | 2.89e-12 | 68.9 |
| Msa1024230 | MtrunA17_Chr5g0401791 | 27.811 | 169 | 109 | 6 | 10 | 170 | 78 | 241 | 3.56e-12 | 68.9 |
| Msa1024230 | MtrunA17_Chr2g0300311 | 31.210 | 157 | 102 | 2 | 23 | 179 | 44 | 194 | 5.37e-12 | 68.2 |
| Msa1024230 | MtrunA17_Chr2g0297831 | 30.719 | 153 | 100 | 2 | 27 | 179 | 65 | 211 | 3.00e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1024230 | AT4G31980.1 | 33.143 | 175 | 98 | 7 | 11 | 179 | 276 | 437 | 9.51e-19 | 90.5 |
| Msa1024230 | AT5G22550.2 | 35.897 | 156 | 96 | 2 | 29 | 182 | 44 | 197 | 1.05e-18 | 89.7 |
| Msa1024230 | AT3G47250.3 | 34.416 | 154 | 95 | 2 | 28 | 179 | 60 | 209 | 2.93e-18 | 88.2 |
| Msa1024230 | AT3G47250.2 | 34.416 | 154 | 95 | 2 | 28 | 179 | 60 | 209 | 2.93e-18 | 88.2 |
| Msa1024230 | AT3G47250.1 | 34.416 | 154 | 95 | 2 | 28 | 179 | 60 | 209 | 2.93e-18 | 88.2 |
| Msa1024230 | AT3G47210.1 | 37.342 | 158 | 90 | 3 | 27 | 184 | 91 | 239 | 7.88e-18 | 87.0 |
| Msa1024230 | AT5G11290.2 | 33.918 | 171 | 102 | 6 | 11 | 179 | 16 | 177 | 2.87e-17 | 84.7 |
| Msa1024230 | AT3G50160.1 | 28.649 | 185 | 122 | 4 | 10 | 189 | 82 | 261 | 1.32e-16 | 83.2 |
| Msa1024230 | AT3G50180.1 | 31.250 | 176 | 110 | 5 | 10 | 179 | 155 | 325 | 4.41e-16 | 82.0 |
| Msa1024230 | AT5G22560.1 | 30.588 | 170 | 102 | 3 | 27 | 182 | 45 | 212 | 1.15e-15 | 80.5 |
| Msa1024230 | AT3G50140.1 | 28.333 | 180 | 118 | 5 | 6 | 179 | 86 | 260 | 1.56e-15 | 80.1 |
| Msa1024230 | AT3G50140.2 | 28.333 | 180 | 118 | 5 | 6 | 179 | 86 | 260 | 2.01e-15 | 79.0 |
| Msa1024230 | AT3G50170.1 | 31.788 | 151 | 96 | 3 | 31 | 179 | 115 | 260 | 2.67e-15 | 79.3 |
| Msa1024230 | AT3G50170.2 | 31.788 | 151 | 96 | 3 | 31 | 179 | 115 | 260 | 4.13e-15 | 78.2 |
| Msa1024230 | AT3G44710.1 | 35.256 | 156 | 92 | 4 | 30 | 184 | 51 | 198 | 4.48e-15 | 78.6 |
| Msa1024230 | AT3G50130.1 | 28.889 | 180 | 117 | 5 | 6 | 179 | 112 | 286 | 4.90e-15 | 78.6 |
| Msa1024230 | AT5G22540.1 | 30.519 | 154 | 105 | 1 | 29 | 182 | 31 | 182 | 6.08e-15 | 77.8 |
| Msa1024230 | AT2G36430.1 | 35.256 | 156 | 88 | 3 | 28 | 179 | 44 | 190 | 6.95e-15 | 77.8 |
| Msa1024230 | AT3G50120.1 | 28.249 | 177 | 114 | 5 | 10 | 179 | 80 | 250 | 2.48e-14 | 76.3 |
| Msa1024230 | AT3G47200.1 | 34.615 | 156 | 91 | 4 | 27 | 179 | 44 | 191 | 9.33e-14 | 74.3 |
| Msa1024230 | AT3G47200.2 | 34.615 | 156 | 91 | 4 | 27 | 179 | 44 | 191 | 9.33e-14 | 74.3 |
| Msa1024230 | AT3G50190.4 | 26.705 | 176 | 116 | 5 | 6 | 174 | 69 | 238 | 6.05e-13 | 71.2 |
| Msa1024230 | AT3G50190.3 | 26.705 | 176 | 116 | 5 | 6 | 174 | 69 | 238 | 6.05e-13 | 71.2 |
| Msa1024230 | AT3G50190.1 | 26.286 | 175 | 118 | 4 | 6 | 174 | 69 | 238 | 6.64e-13 | 71.6 |
| Msa1024230 | AT3G50190.2 | 26.705 | 176 | 116 | 5 | 6 | 174 | 69 | 238 | 7.30e-13 | 70.5 |
| Msa1024230 | AT3G44700.1 | 31.496 | 127 | 82 | 2 | 27 | 148 | 46 | 172 | 6.12e-12 | 65.9 |
Find 120 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAATTTCCTAGCCGTTTA+TGG | 0.078534 | 7_1:-52904066 | Msa1024230:CDS |
| TTTCCCACTTTGAAACTTAA+AGG | 0.144472 | 7_1:+52903337 | None:intergenic |
| AGCAACAGAGAGGAATTATT+TGG | 0.197577 | 7_1:+52902770 | None:intergenic |
| AACTTATGGAGGACCATAAT+TGG | 0.213989 | 7_1:+52903968 | None:intergenic |
| CCTTTCAATTCCACCTCTTC+AGG | 0.223603 | 7_1:+52903371 | None:intergenic |
| ACTGTTGTGCAGACTGTTTA+TGG | 0.229626 | 7_1:-52902813 | Msa1024230:CDS |
| AATCTTGTTCTTGCTTCTCT+TGG | 0.245483 | 7_1:-52903517 | Msa1024230:CDS |
| TCTGTCTGATCTAATGTTAT+TGG | 0.253163 | 7_1:-52904002 | Msa1024230:CDS |
| AAGCTCTCATCATTGTTTCT+AGG | 0.269209 | 7_1:+52903212 | None:intergenic |
| TGTAAAATTATGTTATTAGA+TGG | 0.297337 | 7_1:-52904130 | Msa1024230:CDS |
| GCATATCAACCAACAAAATA+TGG | 0.299530 | 7_1:-52904478 | Msa1024230:CDS |
| ATCTTGTTCTTGCTTCTCTT+GGG | 0.304676 | 7_1:-52903516 | Msa1024230:CDS |
| TCTCTTGGGGTACGTTGTTT+CGG | 0.311951 | 7_1:-52903502 | Msa1024230:CDS |
| AATCTTGCTCTCTCTGTCTT+AGG | 0.312373 | 7_1:-52903758 | Msa1024230:CDS |
| AAGCAGAGATTTACATTTCA+TGG | 0.314728 | 7_1:-52904305 | Msa1024230:CDS |
| AGACATGGTAATTGAAGATT+AGG | 0.317782 | 7_1:+52903731 | None:intergenic |
| CTATCTGGTTCAAACACATT+TGG | 0.348301 | 7_1:+52903929 | None:intergenic |
| AAAGTGTTTGAGACAACTTA+TGG | 0.354796 | 7_1:+52903954 | None:intergenic |
| CCGTTTATGGCCACCTGGTC+CGG | 0.368241 | 7_1:-52904053 | Msa1024230:CDS |
| TACTGACATCAACTACCTTA+TGG | 0.372936 | 7_1:+52902997 | None:intergenic |
| TCCTCCGTCTCTATCCTATC+TGG | 0.384127 | 7_1:+52903914 | None:intergenic |
| GCACTTCTCCAAGTTATTAA+CGG | 0.386126 | 7_1:+52904231 | None:intergenic |
| AGATGATGTCCAATTTCTTA+AGG | 0.394442 | 7_1:-52903102 | Msa1024230:CDS |
| TAACATCAACAATAACTCTA+AGG | 0.394642 | 7_1:-52902955 | Msa1024230:CDS |
| AGAAGTGCAGCGAAGCAGTT+TGG | 0.403363 | 7_1:-52904216 | Msa1024230:CDS |
| GGAGAACCAGATCCCAATTA+TGG | 0.404453 | 7_1:-52903981 | Msa1024230:CDS |
| TCTCTGCTTCCATTGAATCT+TGG | 0.409505 | 7_1:+52904319 | None:intergenic |
| TATTGTGGATCATTTGAAGA+TGG | 0.412850 | 7_1:-52903069 | Msa1024230:CDS |
| AGAAGAAAGAGAGGATAGAA+AGG | 0.417502 | 7_1:-52903841 | Msa1024230:CDS |
| AGAAGAAAGAGAGGATAGAA+AGG | 0.417502 | 7_1:-52903889 | Msa1024230:CDS |
| CCGGACCAGGTGGCCATAAA+CGG | 0.420894 | 7_1:+52904053 | None:intergenic |
| ATCTTAAAAGCCATTCTTGA+CGG | 0.422993 | 7_1:+52902883 | None:intergenic |
| CAAATGTGTTTGAACCAGAT+AGG | 0.423228 | 7_1:-52903928 | Msa1024230:CDS |
| ATTGTTTCTAGGTGCAAAAC+GGG | 0.425412 | 7_1:+52903223 | None:intergenic |
| GCAACAGAGAGGAATTATTT+GGG | 0.433296 | 7_1:+52902771 | None:intergenic |
| GAAGTGCAGCGAAGCAGTTT+GGG | 0.436448 | 7_1:-52904215 | Msa1024230:CDS |
| TTAAGGTAACTCCTGCAGTT+AGG | 0.444039 | 7_1:+52903573 | None:intergenic |
| TCATGGAAGAAGTAAAATTA+CGG | 0.449648 | 7_1:-52904288 | Msa1024230:CDS |
| ATTGTGGATCATTTGAAGAT+GGG | 0.452762 | 7_1:-52903068 | Msa1024230:CDS |
| ATTTGGGAAAATAATATGCT+AGG | 0.455713 | 7_1:+52902787 | None:intergenic |
| CATTGTTTCTAGGTGCAAAA+CGG | 0.459323 | 7_1:+52903222 | None:intergenic |
| GGAGGACCATAATTGGGATC+TGG | 0.463944 | 7_1:+52903975 | None:intergenic |
| TGTTCCACACCCAACTGAAA+AGG | 0.464577 | 7_1:+52903468 | None:intergenic |
| CATTCACATACCGTCAAGAA+TGG | 0.464904 | 7_1:-52902893 | Msa1024230:CDS |
| AGTGGTGCAATCTAATTGCT+TGG | 0.478388 | 7_1:-52903271 | Msa1024230:CDS |
| TTAGAACTTCTAATATCAAA+GGG | 0.481732 | 7_1:-52904097 | Msa1024230:CDS |
| GACATGGTAATTGAAGATTA+GGG | 0.483642 | 7_1:+52903732 | None:intergenic |
| GTTAGAACTTCTAATATCAA+AGG | 0.484626 | 7_1:-52904098 | Msa1024230:CDS |
| AGAGGATAGAAAGGGAGCTC+AGG | 0.485506 | 7_1:-52903832 | Msa1024230:CDS |
| CGGAGGAGGAGAAGAAAGAG+AGG | 0.490605 | 7_1:-52903850 | Msa1024230:CDS |
| CGGAGGAGGAGAAGAAAGAG+AGG | 0.490605 | 7_1:-52903898 | Msa1024230:CDS |
| GGTCCGATGGATACCACCCT+TGG | 0.499207 | 7_1:+52904340 | None:intergenic |
| AGAGGTGGAATTGAAAGGCT+TGG | 0.499846 | 7_1:-52903366 | Msa1024230:CDS |
| AGCAGCGGAAGAGCGAGCTG+AGG | 0.501379 | 7_1:-52903796 | Msa1024230:CDS |
| AGCACTACAGTTGCCGGACC+AGG | 0.503098 | 7_1:+52904040 | None:intergenic |
| AGCATTTGGAGTTGACCATA+AGG | 0.503300 | 7_1:-52903012 | Msa1024230:CDS |
| TCTTGTTCTTGCTTCTCTTG+GGG | 0.504352 | 7_1:-52903515 | Msa1024230:CDS |
| GTGGTGCAATCTAATTGCTT+GGG | 0.506809 | 7_1:-52903270 | Msa1024230:CDS |
| ACTTATGGAGGACCATAATT+GGG | 0.506841 | 7_1:+52903969 | None:intergenic |
| CATCATCTTCAGAACAGATC+AGG | 0.508872 | 7_1:+52903117 | None:intergenic |
| TCCATTGAATCTTGGTCCGA+TGG | 0.509486 | 7_1:+52904327 | None:intergenic |
| GAAGAAAGAGAGGATAGAAA+GGG | 0.510011 | 7_1:-52903840 | Msa1024230:CDS |
| GAAGAAAGAGAGGATAGAAA+GGG | 0.510011 | 7_1:-52903888 | Msa1024230:CDS |
| CCTAGCCGTTTATGGCCACC+TGG | 0.517835 | 7_1:-52904058 | Msa1024230:CDS |
| TCCATCGGACCAAGATTCAA+TGG | 0.519403 | 7_1:-52904328 | Msa1024230:CDS |
| AAAGGGAGCTCAGGATAAAG+AGG | 0.521964 | 7_1:-52903823 | Msa1024230:CDS |
| AGATCAAGAATGTGAGGGTG+AGG | 0.524209 | 7_1:+52903701 | None:intergenic |
| AGAGGATAGAAAGGGAGCAC+AGG | 0.531712 | 7_1:-52903880 | Msa1024230:CDS |
| CCTGAAGAGGTGGAATTGAA+AGG | 0.532414 | 7_1:-52903371 | Msa1024230:CDS |
| TGAAAAGTTTCTGCTTCCAG+AGG | 0.533074 | 7_1:+52903539 | None:intergenic |
| GCAGCGGAAGAGCGAGCTGA+GGG | 0.539319 | 7_1:-52903795 | Msa1024230:CDS |
| TTTCCTTTAAGTTTCAAAGT+GGG | 0.540894 | 7_1:-52903340 | Msa1024230:CDS |
| ATCAAGAATGTGAGGGTGAG+GGG | 0.541281 | 7_1:+52903703 | None:intergenic |
| TTTAAGATTTACTGGAACCA+CGG | 0.541928 | 7_1:+52904387 | None:intergenic |
| GGGTGAGGGGCTTCGAGACA+TGG | 0.545546 | 7_1:+52903716 | None:intergenic |
| GTTTCTGGTCAGTGTGGCGG+TGG | 0.549396 | 7_1:-52903173 | Msa1024230:CDS |
| ATCAACCAACAAAATATGGT+TGG | 0.555154 | 7_1:-52904474 | Msa1024230:CDS |
| TCGTCTCTTCTTCATCGAGC+GGG | 0.555486 | 7_1:-52904259 | Msa1024230:CDS |
| GCTCTGAGGCTCCTAACTGC+AGG | 0.555488 | 7_1:-52903584 | Msa1024230:CDS |
| TCAACATGTTGCTGCTGAGT+CGG | 0.560341 | 7_1:+52903620 | None:intergenic |
| AAAGTTTCTGCTTCCAGAGG+GGG | 0.561506 | 7_1:+52903542 | None:intergenic |
| GGGTGAAGCCGTTAATAACT+TGG | 0.562238 | 7_1:-52904239 | Msa1024230:CDS |
| GATCAAGAATGTGAGGGTGA+GGG | 0.563945 | 7_1:+52903702 | None:intergenic |
| TGGCGGTGGCAAATTTACTT+CGG | 0.570393 | 7_1:-52903159 | Msa1024230:CDS |
| ACGAGGATGCATACAAGCCA+AGG | 0.576332 | 7_1:-52904357 | Msa1024230:CDS |
| TCAATCATGTAAAATTTCCG+TGG | 0.583512 | 7_1:-52904404 | Msa1024230:CDS |
| GCACAGGATAGAGACGGAGG+AGG | 0.585567 | 7_1:-52903864 | Msa1024230:CDS |
| AGTTTGGGAATTAGATCAAG+AGG | 0.586491 | 7_1:-52904200 | Msa1024230:CDS |
| TTTCATTAATTGGACATGTG+AGG | 0.590536 | 7_1:-52903669 | Msa1024230:CDS |
| GAAAAGTTTCTGCTTCCAGA+GGG | 0.592258 | 7_1:+52903540 | None:intergenic |
| AACTGAAGCGCTGTGCTCTG+AGG | 0.592557 | 7_1:-52903598 | Msa1024230:CDS |
| AACTGTAGTGCTAAAAGACC+AGG | 0.594558 | 7_1:-52904029 | Msa1024230:CDS |
| CCAGGTGGCCATAAACGGCT+AGG | 0.600049 | 7_1:+52904058 | None:intergenic |
| GTCGTCTCTTCTTCATCGAG+CGG | 0.604258 | 7_1:-52904260 | Msa1024230:CDS |
| AAGCCAAGGGTGGTATCCAT+CGG | 0.606961 | 7_1:-52904343 | Msa1024230:CDS |
| GGATAAAGAGGGAGGAGCAG+CGG | 0.607006 | 7_1:-52903811 | Msa1024230:CDS |
| AGATAGGATAGAGACGGAGG+AGG | 0.610819 | 7_1:-52903912 | Msa1024230:CDS |
| TGCGGATCATATTCCTGAAG+AGG | 0.618167 | 7_1:-52903384 | Msa1024230:CDS |
| TAATTGGACATGTGAGGTCG+TGG | 0.620817 | 7_1:-52903663 | Msa1024230:CDS |
| TGGACAAGATCAAGAATGTG+AGG | 0.631306 | 7_1:+52903695 | None:intergenic |
| GAACAACATGTACTTTGATG+CGG | 0.635638 | 7_1:-52903402 | Msa1024230:CDS |
| AAGGGAGCACAGGATAGAGA+CGG | 0.638127 | 7_1:-52903870 | Msa1024230:CDS |
| ATTGTTTCTGGTCAGTGTGG+CGG | 0.639030 | 7_1:-52903176 | Msa1024230:CDS |
| AAGGGAGCTCAGGATAAAGA+GGG | 0.642816 | 7_1:-52903822 | Msa1024230:CDS |
| TTGCAACGAAGTTGTAATTG+CGG | 0.643446 | 7_1:+52902853 | None:intergenic |
| TGAACCAGATAGGATAGAGA+CGG | 0.648206 | 7_1:-52903918 | Msa1024230:CDS |
| ACTACAGTTGCCGGACCAGG+TGG | 0.649297 | 7_1:+52904043 | None:intergenic |
| CGAGGATGCATACAAGCCAA+GGG | 0.654204 | 7_1:-52904356 | Msa1024230:CDS |
| GGAGCACAGGATAGAGACGG+AGG | 0.656947 | 7_1:-52903867 | Msa1024230:CDS |
| GGACAAGATCAAGAATGTGA+GGG | 0.659835 | 7_1:+52903696 | None:intergenic |
| TTAGATCAGACAGAACATCC+TGG | 0.664540 | 7_1:+52904011 | None:intergenic |
| ACAATTGTTTCTGGTCAGTG+TGG | 0.665918 | 7_1:-52903179 | Msa1024230:CDS |
| ACCAGATAGGATAGAGACGG+AGG | 0.666559 | 7_1:-52903915 | Msa1024230:CDS |
| GGATCATATTCCTGAAGAGG+TGG | 0.684348 | 7_1:-52903381 | Msa1024230:CDS |
| TTGGACATGTGAGGTCGTGG+TGG | 0.687027 | 7_1:-52903660 | Msa1024230:CDS |
| GGAGCTCAGGATAAAGAGGG+AGG | 0.691035 | 7_1:-52903819 | Msa1024230:CDS |
| AAAAGTTTCTGCTTCCAGAG+GGG | 0.695228 | 7_1:+52903541 | None:intergenic |
| GGATGCATACAAGCCAAGGG+TGG | 0.699388 | 7_1:-52904353 | Msa1024230:CDS |
| GTGTTTGAGACAACTTATGG+AGG | 0.700406 | 7_1:+52903957 | None:intergenic |
| TCAAGAGAAAGATACTGCAG+AGG | 0.712863 | 7_1:+52903423 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCAATTTTTTAAGATTTAC+TGG | + | chr7_1:52902890-52902909 | None:intergenic | 15.0% |
| !! | TGTAAAATTATGTTATTAGA+TGG | - | chr7_1:52903136-52903155 | Msa1024230:CDS | 15.0% |
| !!! | TTCAATTTTTTAAGATTTAC+TGG | + | chr7_1:52902890-52902909 | None:intergenic | 15.0% |
| !! | TGTAAAATTATGTTATTAGA+TGG | - | chr7_1:52903136-52903155 | Msa1024230:CDS | 15.0% |
| !! | AAATCTTAAAAAATTGAACG+AGG | - | chr7_1:52902892-52902911 | Msa1024230:CDS | 20.0% |
| !! | TTAGAACTTCTAATATCAAA+GGG | - | chr7_1:52903169-52903188 | Msa1024230:CDS | 20.0% |
| !!! | TTTTTTTGTCCTTAAGAAAT+TGG | + | chr7_1:52904176-52904195 | None:intergenic | 20.0% |
| !! | TAAGGACAAAAAAATTATTG+TGG | - | chr7_1:52904182-52904201 | Msa1024230:CDS | 20.0% |
| !! | AAATCTTAAAAAATTGAACG+AGG | - | chr7_1:52902892-52902911 | Msa1024230:CDS | 20.0% |
| !! | TTAGAACTTCTAATATCAAA+GGG | - | chr7_1:52903169-52903188 | Msa1024230:CDS | 20.0% |
| !!! | TTTTTTTGTCCTTAAGAAAT+TGG | + | chr7_1:52904176-52904195 | None:intergenic | 20.0% |
| !! | TAAGGACAAAAAAATTATTG+TGG | - | chr7_1:52904182-52904201 | Msa1024230:CDS | 20.0% |
| ! | TCATGGAAGAAGTAAAATTA+CGG | - | chr7_1:52902978-52902997 | Msa1024230:CDS | 25.0% |
| ! | GTTAGAACTTCTAATATCAA+AGG | - | chr7_1:52903168-52903187 | Msa1024230:CDS | 25.0% |
| !!! | TTGTCCACTTTTTCATTAAT+TGG | - | chr7_1:52903587-52903606 | Msa1024230:CDS | 25.0% |
| ! | ATGTCCAATTAATGAAAAAG+TGG | + | chr7_1:52903594-52903613 | None:intergenic | 25.0% |
| !!! | TTTTCCTTTAAGTTTCAAAG+TGG | - | chr7_1:52903925-52903944 | Msa1024230:CDS | 25.0% |
| !! | TTTCCTTTAAGTTTCAAAGT+GGG | - | chr7_1:52903926-52903945 | Msa1024230:CDS | 25.0% |
| ! | AACAAAAACACAATTGTTTC+TGG | - | chr7_1:52904078-52904097 | Msa1024230:CDS | 25.0% |
| ! | TAACATCAACAATAACTCTA+AGG | - | chr7_1:52904311-52904330 | Msa1024230:CDS | 25.0% |
| ! | ATTTGGGAAAATAATATGCT+AGG | + | chr7_1:52904482-52904501 | None:intergenic | 25.0% |
| ! | TCATGGAAGAAGTAAAATTA+CGG | - | chr7_1:52902978-52902997 | Msa1024230:CDS | 25.0% |
| ! | GTTAGAACTTCTAATATCAA+AGG | - | chr7_1:52903168-52903187 | Msa1024230:CDS | 25.0% |
| !!! | TTGTCCACTTTTTCATTAAT+TGG | - | chr7_1:52903587-52903606 | Msa1024230:CDS | 25.0% |
| ! | ATGTCCAATTAATGAAAAAG+TGG | + | chr7_1:52903594-52903613 | None:intergenic | 25.0% |
| !!! | TTTTCCTTTAAGTTTCAAAG+TGG | - | chr7_1:52903925-52903944 | Msa1024230:CDS | 25.0% |
| !! | TTTCCTTTAAGTTTCAAAGT+GGG | - | chr7_1:52903926-52903945 | Msa1024230:CDS | 25.0% |
| ! | AACAAAAACACAATTGTTTC+TGG | - | chr7_1:52904078-52904097 | Msa1024230:CDS | 25.0% |
| ! | TAACATCAACAATAACTCTA+AGG | - | chr7_1:52904311-52904330 | Msa1024230:CDS | 25.0% |
| ! | ATTTGGGAAAATAATATGCT+AGG | + | chr7_1:52904482-52904501 | None:intergenic | 25.0% |
| GCATATCAACCAACAAAATA+TGG | - | chr7_1:52902788-52902807 | Msa1024230:CDS | 30.0% | |
| ATCAACCAACAAAATATGGT+TGG | - | chr7_1:52902792-52902811 | Msa1024230:CDS | 30.0% | |
| ! | TCTAACCAACCATATTTTGT+TGG | + | chr7_1:52902800-52902819 | None:intergenic | 30.0% |
| TCAATCATGTAAAATTTCCG+TGG | - | chr7_1:52902862-52902881 | Msa1024230:CDS | 30.0% | |
| ! | TTTAAGATTTACTGGAACCA+CGG | + | chr7_1:52902882-52902901 | None:intergenic | 30.0% |
| AAGCAGAGATTTACATTTCA+TGG | - | chr7_1:52902961-52902980 | Msa1024230:CDS | 30.0% | |
| TCTGTCTGATCTAATGTTAT+TGG | - | chr7_1:52903264-52903283 | Msa1024230:CDS | 30.0% | |
| ! | AAAGTGTTTGAGACAACTTA+TGG | + | chr7_1:52903315-52903334 | None:intergenic | 30.0% |
| GACATGGTAATTGAAGATTA+GGG | + | chr7_1:52903537-52903556 | None:intergenic | 30.0% | |
| AGACATGGTAATTGAAGATT+AGG | + | chr7_1:52903538-52903557 | None:intergenic | 30.0% | |
| TTTCATTAATTGGACATGTG+AGG | - | chr7_1:52903597-52903616 | Msa1024230:CDS | 30.0% | |
| ! | TTTGCAAAAACCTTTTCAGT+TGG | - | chr7_1:52903788-52903807 | Msa1024230:CDS | 30.0% |
| ! | TTGCAAAAACCTTTTCAGTT+GGG | - | chr7_1:52903789-52903808 | Msa1024230:CDS | 30.0% |
| !! | TTTCCCACTTTGAAACTTAA+AGG | + | chr7_1:52903932-52903951 | None:intergenic | 30.0% |
| CAAAAACAACAAAAGCTAAG+TGG | - | chr7_1:52903977-52903996 | Msa1024230:CDS | 30.0% | |
| AGATGATGTCCAATTTCTTA+AGG | - | chr7_1:52904164-52904183 | Msa1024230:CDS | 30.0% | |
| TATTGTGGATCATTTGAAGA+TGG | - | chr7_1:52904197-52904216 | Msa1024230:CDS | 30.0% | |
| ATTGTGGATCATTTGAAGAT+GGG | - | chr7_1:52904198-52904217 | Msa1024230:CDS | 30.0% | |
| !!! | TTTTTTCGCTCAATAGCATT+TGG | - | chr7_1:52904240-52904259 | Msa1024230:CDS | 30.0% |
| ! | CGTTTTTCATTAAACGAATG+TGG | - | chr7_1:52904334-52904353 | Msa1024230:CDS | 30.0% |
| ATCTTAAAAGCCATTCTTGA+CGG | + | chr7_1:52904386-52904405 | None:intergenic | 30.0% | |
| GCATATCAACCAACAAAATA+TGG | - | chr7_1:52902788-52902807 | Msa1024230:CDS | 30.0% | |
| ATCAACCAACAAAATATGGT+TGG | - | chr7_1:52902792-52902811 | Msa1024230:CDS | 30.0% | |
| ! | TCTAACCAACCATATTTTGT+TGG | + | chr7_1:52902800-52902819 | None:intergenic | 30.0% |
| TCAATCATGTAAAATTTCCG+TGG | - | chr7_1:52902862-52902881 | Msa1024230:CDS | 30.0% | |
| ! | TTTAAGATTTACTGGAACCA+CGG | + | chr7_1:52902882-52902901 | None:intergenic | 30.0% |
| AAGCAGAGATTTACATTTCA+TGG | - | chr7_1:52902961-52902980 | Msa1024230:CDS | 30.0% | |
| TCTGTCTGATCTAATGTTAT+TGG | - | chr7_1:52903264-52903283 | Msa1024230:CDS | 30.0% | |
| ! | AAAGTGTTTGAGACAACTTA+TGG | + | chr7_1:52903315-52903334 | None:intergenic | 30.0% |
| GACATGGTAATTGAAGATTA+GGG | + | chr7_1:52903537-52903556 | None:intergenic | 30.0% | |
| AGACATGGTAATTGAAGATT+AGG | + | chr7_1:52903538-52903557 | None:intergenic | 30.0% | |
| TTTCATTAATTGGACATGTG+AGG | - | chr7_1:52903597-52903616 | Msa1024230:CDS | 30.0% | |
| ! | TTTGCAAAAACCTTTTCAGT+TGG | - | chr7_1:52903788-52903807 | Msa1024230:CDS | 30.0% |
| ! | TTGCAAAAACCTTTTCAGTT+GGG | - | chr7_1:52903789-52903808 | Msa1024230:CDS | 30.0% |
| !! | TTTCCCACTTTGAAACTTAA+AGG | + | chr7_1:52903932-52903951 | None:intergenic | 30.0% |
| CAAAAACAACAAAAGCTAAG+TGG | - | chr7_1:52903977-52903996 | Msa1024230:CDS | 30.0% | |
| AGATGATGTCCAATTTCTTA+AGG | - | chr7_1:52904164-52904183 | Msa1024230:CDS | 30.0% | |
| TATTGTGGATCATTTGAAGA+TGG | - | chr7_1:52904197-52904216 | Msa1024230:CDS | 30.0% | |
| ATTGTGGATCATTTGAAGAT+GGG | - | chr7_1:52904198-52904217 | Msa1024230:CDS | 30.0% | |
| !!! | TTTTTTCGCTCAATAGCATT+TGG | - | chr7_1:52904240-52904259 | Msa1024230:CDS | 30.0% |
| ! | CGTTTTTCATTAAACGAATG+TGG | - | chr7_1:52904334-52904353 | Msa1024230:CDS | 30.0% |
| ATCTTAAAAGCCATTCTTGA+CGG | + | chr7_1:52904386-52904405 | None:intergenic | 30.0% | |
| GCACTTCTCCAAGTTATTAA+CGG | + | chr7_1:52903038-52903057 | None:intergenic | 35.0% | |
| AGTTTGGGAATTAGATCAAG+AGG | - | chr7_1:52903066-52903085 | Msa1024230:CDS | 35.0% | |
| ! | TTTTACAGAGTTCTTGTCGT+TGG | + | chr7_1:52903123-52903142 | None:intergenic | 35.0% |
| ACTTATGGAGGACCATAATT+GGG | + | chr7_1:52903300-52903319 | None:intergenic | 35.0% | |
| AACTTATGGAGGACCATAAT+TGG | + | chr7_1:52903301-52903320 | None:intergenic | 35.0% | |
| ! | CTATCTGGTTCAAACACATT+TGG | + | chr7_1:52903340-52903359 | None:intergenic | 35.0% |
| CAAATGTGTTTGAACCAGAT+AGG | - | chr7_1:52903338-52903357 | Msa1024230:CDS | 35.0% | |
| AGAAGAAAGAGAGGATAGAA+AGG | - | chr7_1:52903377-52903396 | Msa1024230:CDS | 35.0% | |
| GAAGAAAGAGAGGATAGAAA+GGG | - | chr7_1:52903378-52903397 | Msa1024230:CDS | 35.0% | |
| AGAAGAAAGAGAGGATAGAA+AGG | - | chr7_1:52903377-52903396 | Msa1024230:CDS | 35.0% | |
| GAAGAAAGAGAGGATAGAAA+GGG | - | chr7_1:52903378-52903397 | Msa1024230:CDS | 35.0% | |
| AATCTTGTTCTTGCTTCTCT+TGG | - | chr7_1:52903749-52903768 | Msa1024230:CDS | 35.0% | |
| ATCTTGTTCTTGCTTCTCTT+GGG | - | chr7_1:52903750-52903769 | Msa1024230:CDS | 35.0% | |
| ! | TGGGTGTGGAACATTTTATA+TGG | - | chr7_1:52903808-52903827 | Msa1024230:CDS | 35.0% |
| GAACAACATGTACTTTGATG+CGG | - | chr7_1:52903864-52903883 | Msa1024230:CDS | 35.0% | |
| !! | ATTGTTTCTAGGTGCAAAAC+GGG | + | chr7_1:52904046-52904065 | None:intergenic | 35.0% |
| !! | CATTGTTTCTAGGTGCAAAA+CGG | + | chr7_1:52904047-52904066 | None:intergenic | 35.0% |
| ! | AAGCTCTCATCATTGTTTCT+AGG | + | chr7_1:52904057-52904076 | None:intergenic | 35.0% |
| TACTGACATCAACTACCTTA+TGG | + | chr7_1:52904272-52904291 | None:intergenic | 35.0% | |
| TTGCAACGAAGTTGTAATTG+CGG | + | chr7_1:52904416-52904435 | None:intergenic | 35.0% | |
| GCACTTCTCCAAGTTATTAA+CGG | + | chr7_1:52903038-52903057 | None:intergenic | 35.0% | |
| AGTTTGGGAATTAGATCAAG+AGG | - | chr7_1:52903066-52903085 | Msa1024230:CDS | 35.0% | |
| ! | TTTTACAGAGTTCTTGTCGT+TGG | + | chr7_1:52903123-52903142 | None:intergenic | 35.0% |
| ACTTATGGAGGACCATAATT+GGG | + | chr7_1:52903300-52903319 | None:intergenic | 35.0% | |
| AACTTATGGAGGACCATAAT+TGG | + | chr7_1:52903301-52903320 | None:intergenic | 35.0% | |
| ! | CTATCTGGTTCAAACACATT+TGG | + | chr7_1:52903340-52903359 | None:intergenic | 35.0% |
| CAAATGTGTTTGAACCAGAT+AGG | - | chr7_1:52903338-52903357 | Msa1024230:CDS | 35.0% | |
| AGAAGAAAGAGAGGATAGAA+AGG | - | chr7_1:52903377-52903396 | Msa1024230:CDS | 35.0% | |
| GAAGAAAGAGAGGATAGAAA+GGG | - | chr7_1:52903378-52903397 | Msa1024230:CDS | 35.0% | |
| AGAAGAAAGAGAGGATAGAA+AGG | - | chr7_1:52903377-52903396 | Msa1024230:CDS | 35.0% | |
| GAAGAAAGAGAGGATAGAAA+GGG | - | chr7_1:52903378-52903397 | Msa1024230:CDS | 35.0% | |
| AATCTTGTTCTTGCTTCTCT+TGG | - | chr7_1:52903749-52903768 | Msa1024230:CDS | 35.0% | |
| ATCTTGTTCTTGCTTCTCTT+GGG | - | chr7_1:52903750-52903769 | Msa1024230:CDS | 35.0% | |
| ! | TGGGTGTGGAACATTTTATA+TGG | - | chr7_1:52903808-52903827 | Msa1024230:CDS | 35.0% |
| GAACAACATGTACTTTGATG+CGG | - | chr7_1:52903864-52903883 | Msa1024230:CDS | 35.0% | |
| !! | ATTGTTTCTAGGTGCAAAAC+GGG | + | chr7_1:52904046-52904065 | None:intergenic | 35.0% |
| !! | CATTGTTTCTAGGTGCAAAA+CGG | + | chr7_1:52904047-52904066 | None:intergenic | 35.0% |
| ! | AAGCTCTCATCATTGTTTCT+AGG | + | chr7_1:52904057-52904076 | None:intergenic | 35.0% |
| TACTGACATCAACTACCTTA+TGG | + | chr7_1:52904272-52904291 | None:intergenic | 35.0% | |
| TTGCAACGAAGTTGTAATTG+CGG | + | chr7_1:52904416-52904435 | None:intergenic | 35.0% | |
| TCTCTGCTTCCATTGAATCT+TGG | + | chr7_1:52902950-52902969 | None:intergenic | 40.0% | |
| CACAATTTCCTAGCCGTTTA+TGG | - | chr7_1:52903200-52903219 | Msa1024230:CDS | 40.0% | |
| ! | TCTTTTAGCACTACAGTTGC+CGG | + | chr7_1:52903235-52903254 | None:intergenic | 40.0% |
| AACTGTAGTGCTAAAAGACC+AGG | - | chr7_1:52903237-52903256 | Msa1024230:CDS | 40.0% | |
| TTAGATCAGACAGAACATCC+TGG | + | chr7_1:52903258-52903277 | None:intergenic | 40.0% | |
| ! | GTGTTTGAGACAACTTATGG+AGG | + | chr7_1:52903312-52903331 | None:intergenic | 40.0% |
| TGAACCAGATAGGATAGAGA+CGG | - | chr7_1:52903348-52903367 | Msa1024230:CDS | 40.0% | |
| AATCTTGCTCTCTCTGTCTT+AGG | - | chr7_1:52903508-52903527 | Msa1024230:CDS | 40.0% | |
| GGACAAGATCAAGAATGTGA+GGG | + | chr7_1:52903573-52903592 | None:intergenic | 40.0% | |
| TGGACAAGATCAAGAATGTG+AGG | + | chr7_1:52903574-52903593 | None:intergenic | 40.0% | |
| TTAAGGTAACTCCTGCAGTT+AGG | + | chr7_1:52903696-52903715 | None:intergenic | 40.0% | |
| AAAAGTTTCTGCTTCCAGAG+GGG | + | chr7_1:52903728-52903747 | None:intergenic | 40.0% | |
| GAAAAGTTTCTGCTTCCAGA+GGG | + | chr7_1:52903729-52903748 | None:intergenic | 40.0% | |
| TGAAAAGTTTCTGCTTCCAG+AGG | + | chr7_1:52903730-52903749 | None:intergenic | 40.0% | |
| TCTTGTTCTTGCTTCTCTTG+GGG | - | chr7_1:52903751-52903770 | Msa1024230:CDS | 40.0% | |
| ! | AAAACCTTTTCAGTTGGGTG+TGG | - | chr7_1:52903794-52903813 | Msa1024230:CDS | 40.0% |
| TCAAGAGAAAGATACTGCAG+AGG | + | chr7_1:52903846-52903865 | None:intergenic | 40.0% | |
| AGTGGTGCAATCTAATTGCT+TGG | - | chr7_1:52903995-52904014 | Msa1024230:CDS | 40.0% | |
| GTGGTGCAATCTAATTGCTT+GGG | - | chr7_1:52903996-52904015 | Msa1024230:CDS | 40.0% | |
| !! | ACAATTGTTTCTGGTCAGTG+TGG | - | chr7_1:52904087-52904106 | Msa1024230:CDS | 40.0% |
| !! | TCGGCTGCTTTGATTTTCAA+TGG | - | chr7_1:52904126-52904145 | Msa1024230:CDS | 40.0% |
| CATCATCTTCAGAACAGATC+AGG | + | chr7_1:52904152-52904171 | None:intergenic | 40.0% | |
| ! | AGCATTTGGAGTTGACCATA+AGG | - | chr7_1:52904254-52904273 | Msa1024230:CDS | 40.0% |
| CATTCACATACCGTCAAGAA+TGG | - | chr7_1:52904373-52904392 | Msa1024230:CDS | 40.0% | |
| ACTGTTGTGCAGACTGTTTA+TGG | - | chr7_1:52904453-52904472 | Msa1024230:CDS | 40.0% | |
| TCTCTGCTTCCATTGAATCT+TGG | + | chr7_1:52902950-52902969 | None:intergenic | 40.0% | |
| CACAATTTCCTAGCCGTTTA+TGG | - | chr7_1:52903200-52903219 | Msa1024230:CDS | 40.0% | |
| ! | TCTTTTAGCACTACAGTTGC+CGG | + | chr7_1:52903235-52903254 | None:intergenic | 40.0% |
| AACTGTAGTGCTAAAAGACC+AGG | - | chr7_1:52903237-52903256 | Msa1024230:CDS | 40.0% | |
| TTAGATCAGACAGAACATCC+TGG | + | chr7_1:52903258-52903277 | None:intergenic | 40.0% | |
| ! | GTGTTTGAGACAACTTATGG+AGG | + | chr7_1:52903312-52903331 | None:intergenic | 40.0% |
| TGAACCAGATAGGATAGAGA+CGG | - | chr7_1:52903348-52903367 | Msa1024230:CDS | 40.0% | |
| AATCTTGCTCTCTCTGTCTT+AGG | - | chr7_1:52903508-52903527 | Msa1024230:CDS | 40.0% | |
| GGACAAGATCAAGAATGTGA+GGG | + | chr7_1:52903573-52903592 | None:intergenic | 40.0% | |
| TGGACAAGATCAAGAATGTG+AGG | + | chr7_1:52903574-52903593 | None:intergenic | 40.0% | |
| TTAAGGTAACTCCTGCAGTT+AGG | + | chr7_1:52903696-52903715 | None:intergenic | 40.0% | |
| AAAAGTTTCTGCTTCCAGAG+GGG | + | chr7_1:52903728-52903747 | None:intergenic | 40.0% | |
| GAAAAGTTTCTGCTTCCAGA+GGG | + | chr7_1:52903729-52903748 | None:intergenic | 40.0% | |
| TGAAAAGTTTCTGCTTCCAG+AGG | + | chr7_1:52903730-52903749 | None:intergenic | 40.0% | |
| TCTTGTTCTTGCTTCTCTTG+GGG | - | chr7_1:52903751-52903770 | Msa1024230:CDS | 40.0% | |
| ! | AAAACCTTTTCAGTTGGGTG+TGG | - | chr7_1:52903794-52903813 | Msa1024230:CDS | 40.0% |
| TCAAGAGAAAGATACTGCAG+AGG | + | chr7_1:52903846-52903865 | None:intergenic | 40.0% | |
| AGTGGTGCAATCTAATTGCT+TGG | - | chr7_1:52903995-52904014 | Msa1024230:CDS | 40.0% | |
| GTGGTGCAATCTAATTGCTT+GGG | - | chr7_1:52903996-52904015 | Msa1024230:CDS | 40.0% | |
| !! | ACAATTGTTTCTGGTCAGTG+TGG | - | chr7_1:52904087-52904106 | Msa1024230:CDS | 40.0% |
| !! | TCGGCTGCTTTGATTTTCAA+TGG | - | chr7_1:52904126-52904145 | Msa1024230:CDS | 40.0% |
| CATCATCTTCAGAACAGATC+AGG | + | chr7_1:52904152-52904171 | None:intergenic | 40.0% | |
| ! | AGCATTTGGAGTTGACCATA+AGG | - | chr7_1:52904254-52904273 | Msa1024230:CDS | 40.0% |
| CATTCACATACCGTCAAGAA+TGG | - | chr7_1:52904373-52904392 | Msa1024230:CDS | 40.0% | |
| ACTGTTGTGCAGACTGTTTA+TGG | - | chr7_1:52904453-52904472 | Msa1024230:CDS | 40.0% | |
| TCCATCGGACCAAGATTCAA+TGG | - | chr7_1:52902938-52902957 | Msa1024230:CDS | 45.0% | |
| TCCATTGAATCTTGGTCCGA+TGG | + | chr7_1:52902942-52902961 | None:intergenic | 45.0% | |
| GGGTGAAGCCGTTAATAACT+TGG | - | chr7_1:52903027-52903046 | Msa1024230:CDS | 45.0% | |
| GGAGAACCAGATCCCAATTA+TGG | - | chr7_1:52903285-52903304 | Msa1024230:CDS | 45.0% | |
| AAAGGGAGCTCAGGATAAAG+AGG | - | chr7_1:52903443-52903462 | Msa1024230:CDS | 45.0% | |
| AAGGGAGCTCAGGATAAAGA+GGG | - | chr7_1:52903444-52903463 | Msa1024230:CDS | 45.0% | |
| ATCAAGAATGTGAGGGTGAG+GGG | + | chr7_1:52903566-52903585 | None:intergenic | 45.0% | |
| GATCAAGAATGTGAGGGTGA+GGG | + | chr7_1:52903567-52903586 | None:intergenic | 45.0% | |
| AGATCAAGAATGTGAGGGTG+AGG | + | chr7_1:52903568-52903587 | None:intergenic | 45.0% | |
| TAATTGGACATGTGAGGTCG+TGG | - | chr7_1:52903603-52903622 | Msa1024230:CDS | 45.0% | |
| TCAACATGTTGCTGCTGAGT+CGG | + | chr7_1:52903649-52903668 | None:intergenic | 45.0% | |
| CAGAGGGGGTTTCATGTTTA+AGG | + | chr7_1:52903713-52903732 | None:intergenic | 45.0% | |
| CTTAAACATGAAACCCCCTC+TGG | - | chr7_1:52903711-52903730 | Msa1024230:CDS | 45.0% | |
| AAAGTTTCTGCTTCCAGAGG+GGG | + | chr7_1:52903727-52903746 | None:intergenic | 45.0% | |
| TCTCTTGGGGTACGTTGTTT+CGG | - | chr7_1:52903764-52903783 | Msa1024230:CDS | 45.0% | |
| TGTTCCACACCCAACTGAAA+AGG | + | chr7_1:52903801-52903820 | None:intergenic | 45.0% | |
| TGCGGATCATATTCCTGAAG+AGG | - | chr7_1:52903882-52903901 | Msa1024230:CDS | 45.0% | |
| GGATCATATTCCTGAAGAGG+TGG | - | chr7_1:52903885-52903904 | Msa1024230:CDS | 45.0% | |
| CCTTTCAATTCCACCTCTTC+AGG | + | chr7_1:52903898-52903917 | None:intergenic | 45.0% | |
| CCTGAAGAGGTGGAATTGAA+AGG | - | chr7_1:52903895-52903914 | Msa1024230:CDS | 45.0% | |
| AGAGGTGGAATTGAAAGGCT+TGG | - | chr7_1:52903900-52903919 | Msa1024230:CDS | 45.0% | |
| !! | ATTGTTTCTGGTCAGTGTGG+CGG | - | chr7_1:52904090-52904109 | Msa1024230:CDS | 45.0% |
| TGGCGGTGGCAAATTTACTT+CGG | - | chr7_1:52904107-52904126 | Msa1024230:CDS | 45.0% | |
| TCCATCGGACCAAGATTCAA+TGG | - | chr7_1:52902938-52902957 | Msa1024230:CDS | 45.0% | |
| TCCATTGAATCTTGGTCCGA+TGG | + | chr7_1:52902942-52902961 | None:intergenic | 45.0% | |
| GGGTGAAGCCGTTAATAACT+TGG | - | chr7_1:52903027-52903046 | Msa1024230:CDS | 45.0% | |
| GGAGAACCAGATCCCAATTA+TGG | - | chr7_1:52903285-52903304 | Msa1024230:CDS | 45.0% | |
| AAAGGGAGCTCAGGATAAAG+AGG | - | chr7_1:52903443-52903462 | Msa1024230:CDS | 45.0% | |
| AAGGGAGCTCAGGATAAAGA+GGG | - | chr7_1:52903444-52903463 | Msa1024230:CDS | 45.0% | |
| ATCAAGAATGTGAGGGTGAG+GGG | + | chr7_1:52903566-52903585 | None:intergenic | 45.0% | |
| GATCAAGAATGTGAGGGTGA+GGG | + | chr7_1:52903567-52903586 | None:intergenic | 45.0% | |
| AGATCAAGAATGTGAGGGTG+AGG | + | chr7_1:52903568-52903587 | None:intergenic | 45.0% | |
| TAATTGGACATGTGAGGTCG+TGG | - | chr7_1:52903603-52903622 | Msa1024230:CDS | 45.0% | |
| TCAACATGTTGCTGCTGAGT+CGG | + | chr7_1:52903649-52903668 | None:intergenic | 45.0% | |
| CAGAGGGGGTTTCATGTTTA+AGG | + | chr7_1:52903713-52903732 | None:intergenic | 45.0% | |
| CTTAAACATGAAACCCCCTC+TGG | - | chr7_1:52903711-52903730 | Msa1024230:CDS | 45.0% | |
| AAAGTTTCTGCTTCCAGAGG+GGG | + | chr7_1:52903727-52903746 | None:intergenic | 45.0% | |
| TCTCTTGGGGTACGTTGTTT+CGG | - | chr7_1:52903764-52903783 | Msa1024230:CDS | 45.0% | |
| TGTTCCACACCCAACTGAAA+AGG | + | chr7_1:52903801-52903820 | None:intergenic | 45.0% | |
| TGCGGATCATATTCCTGAAG+AGG | - | chr7_1:52903882-52903901 | Msa1024230:CDS | 45.0% | |
| GGATCATATTCCTGAAGAGG+TGG | - | chr7_1:52903885-52903904 | Msa1024230:CDS | 45.0% | |
| CCTTTCAATTCCACCTCTTC+AGG | + | chr7_1:52903898-52903917 | None:intergenic | 45.0% | |
| CCTGAAGAGGTGGAATTGAA+AGG | - | chr7_1:52903895-52903914 | Msa1024230:CDS | 45.0% | |
| AGAGGTGGAATTGAAAGGCT+TGG | - | chr7_1:52903900-52903919 | Msa1024230:CDS | 45.0% | |
| !! | ATTGTTTCTGGTCAGTGTGG+CGG | - | chr7_1:52904090-52904109 | Msa1024230:CDS | 45.0% |
| TGGCGGTGGCAAATTTACTT+CGG | - | chr7_1:52904107-52904126 | Msa1024230:CDS | 45.0% | |
| ACGAGGATGCATACAAGCCA+AGG | - | chr7_1:52902909-52902928 | Msa1024230:CDS | 50.0% | |
| CGAGGATGCATACAAGCCAA+GGG | - | chr7_1:52902910-52902929 | Msa1024230:CDS | 50.0% | |
| AAGCCAAGGGTGGTATCCAT+CGG | - | chr7_1:52902923-52902942 | Msa1024230:CDS | 50.0% | |
| GTCGTCTCTTCTTCATCGAG+CGG | - | chr7_1:52903006-52903025 | Msa1024230:CDS | 50.0% | |
| TCGTCTCTTCTTCATCGAGC+GGG | - | chr7_1:52903007-52903026 | Msa1024230:CDS | 50.0% | |
| ! | AGAAGTGCAGCGAAGCAGTT+TGG | - | chr7_1:52903050-52903069 | Msa1024230:CDS | 50.0% |
| GAAGTGCAGCGAAGCAGTTT+GGG | - | chr7_1:52903051-52903070 | Msa1024230:CDS | 50.0% | |
| GGAGGACCATAATTGGGATC+TGG | + | chr7_1:52903294-52903313 | None:intergenic | 50.0% | |
| ACCAGATAGGATAGAGACGG+AGG | - | chr7_1:52903351-52903370 | Msa1024230:CDS | 50.0% | |
| TCCTCCGTCTCTATCCTATC+TGG | + | chr7_1:52903355-52903374 | None:intergenic | 50.0% | |
| AGATAGGATAGAGACGGAGG+AGG | - | chr7_1:52903354-52903373 | Msa1024230:CDS | 50.0% | |
| ! | AGAGGATAGAAAGGGAGCAC+AGG | - | chr7_1:52903386-52903405 | Msa1024230:CDS | 50.0% |
| ! | AAGGGAGCACAGGATAGAGA+CGG | - | chr7_1:52903396-52903415 | Msa1024230:CDS | 50.0% |
| AGAGGATAGAAAGGGAGCTC+AGG | - | chr7_1:52903434-52903453 | Msa1024230:CDS | 50.0% | |
| ACGAGGATGCATACAAGCCA+AGG | - | chr7_1:52902909-52902928 | Msa1024230:CDS | 50.0% | |
| CGAGGATGCATACAAGCCAA+GGG | - | chr7_1:52902910-52902929 | Msa1024230:CDS | 50.0% | |
| AAGCCAAGGGTGGTATCCAT+CGG | - | chr7_1:52902923-52902942 | Msa1024230:CDS | 50.0% | |
| GTCGTCTCTTCTTCATCGAG+CGG | - | chr7_1:52903006-52903025 | Msa1024230:CDS | 50.0% | |
| TCGTCTCTTCTTCATCGAGC+GGG | - | chr7_1:52903007-52903026 | Msa1024230:CDS | 50.0% | |
| ! | AGAAGTGCAGCGAAGCAGTT+TGG | - | chr7_1:52903050-52903069 | Msa1024230:CDS | 50.0% |
| GAAGTGCAGCGAAGCAGTTT+GGG | - | chr7_1:52903051-52903070 | Msa1024230:CDS | 50.0% | |
| GGAGGACCATAATTGGGATC+TGG | + | chr7_1:52903294-52903313 | None:intergenic | 50.0% | |
| ACCAGATAGGATAGAGACGG+AGG | - | chr7_1:52903351-52903370 | Msa1024230:CDS | 50.0% | |
| TCCTCCGTCTCTATCCTATC+TGG | + | chr7_1:52903355-52903374 | None:intergenic | 50.0% | |
| AGATAGGATAGAGACGGAGG+AGG | - | chr7_1:52903354-52903373 | Msa1024230:CDS | 50.0% | |
| ! | AGAGGATAGAAAGGGAGCAC+AGG | - | chr7_1:52903386-52903405 | Msa1024230:CDS | 50.0% |
| ! | AAGGGAGCACAGGATAGAGA+CGG | - | chr7_1:52903396-52903415 | Msa1024230:CDS | 50.0% |
| AGAGGATAGAAAGGGAGCTC+AGG | - | chr7_1:52903434-52903453 | Msa1024230:CDS | 50.0% | |
| GGATGCATACAAGCCAAGGG+TGG | - | chr7_1:52902913-52902932 | Msa1024230:CDS | 55.0% | |
| CGGAGGAGGAGAAGAAAGAG+AGG | - | chr7_1:52903368-52903387 | Msa1024230:CDS | 55.0% | |
| CGGAGGAGGAGAAGAAAGAG+AGG | - | chr7_1:52903368-52903387 | Msa1024230:CDS | 55.0% | |
| GGAGCTCAGGATAAAGAGGG+AGG | - | chr7_1:52903447-52903466 | Msa1024230:CDS | 55.0% | |
| GGATAAAGAGGGAGGAGCAG+CGG | - | chr7_1:52903455-52903474 | Msa1024230:CDS | 55.0% | |
| TTGGACATGTGAGGTCGTGG+TGG | - | chr7_1:52903606-52903625 | Msa1024230:CDS | 55.0% | |
| !! | AACTGAAGCGCTGTGCTCTG+AGG | - | chr7_1:52903668-52903687 | Msa1024230:CDS | 55.0% |
| GGATGCATACAAGCCAAGGG+TGG | - | chr7_1:52902913-52902932 | Msa1024230:CDS | 55.0% | |
| CGGAGGAGGAGAAGAAAGAG+AGG | - | chr7_1:52903368-52903387 | Msa1024230:CDS | 55.0% | |
| CGGAGGAGGAGAAGAAAGAG+AGG | - | chr7_1:52903368-52903387 | Msa1024230:CDS | 55.0% | |
| GGAGCTCAGGATAAAGAGGG+AGG | - | chr7_1:52903447-52903466 | Msa1024230:CDS | 55.0% | |
| GGATAAAGAGGGAGGAGCAG+CGG | - | chr7_1:52903455-52903474 | Msa1024230:CDS | 55.0% | |
| TTGGACATGTGAGGTCGTGG+TGG | - | chr7_1:52903606-52903625 | Msa1024230:CDS | 55.0% | |
| !! | AACTGAAGCGCTGTGCTCTG+AGG | - | chr7_1:52903668-52903687 | Msa1024230:CDS | 55.0% |
| GGTCCGATGGATACCACCCT+TGG | + | chr7_1:52902929-52902948 | None:intergenic | 60.0% | |
| CCAGGTGGCCATAAACGGCT+AGG | + | chr7_1:52903211-52903230 | None:intergenic | 60.0% | |
| CCTAGCCGTTTATGGCCACC+TGG | - | chr7_1:52903208-52903227 | Msa1024230:CDS | 60.0% | |
| CCGGACCAGGTGGCCATAAA+CGG | + | chr7_1:52903216-52903235 | None:intergenic | 60.0% | |
| CCGTTTATGGCCACCTGGTC+CGG | - | chr7_1:52903213-52903232 | Msa1024230:CDS | 60.0% | |
| ACTACAGTTGCCGGACCAGG+TGG | + | chr7_1:52903226-52903245 | None:intergenic | 60.0% | |
| AGCACTACAGTTGCCGGACC+AGG | + | chr7_1:52903229-52903248 | None:intergenic | 60.0% | |
| GGAGCACAGGATAGAGACGG+AGG | - | chr7_1:52903399-52903418 | Msa1024230:CDS | 60.0% | |
| GCACAGGATAGAGACGGAGG+AGG | - | chr7_1:52903402-52903421 | Msa1024230:CDS | 60.0% | |
| !! | GCTCTGAGGCTCCTAACTGC+AGG | - | chr7_1:52903682-52903701 | Msa1024230:CDS | 60.0% |
| !! | GTTTCTGGTCAGTGTGGCGG+TGG | - | chr7_1:52904093-52904112 | Msa1024230:CDS | 60.0% |
| GGTCCGATGGATACCACCCT+TGG | + | chr7_1:52902929-52902948 | None:intergenic | 60.0% | |
| CCAGGTGGCCATAAACGGCT+AGG | + | chr7_1:52903211-52903230 | None:intergenic | 60.0% | |
| CCTAGCCGTTTATGGCCACC+TGG | - | chr7_1:52903208-52903227 | Msa1024230:CDS | 60.0% | |
| CCGGACCAGGTGGCCATAAA+CGG | + | chr7_1:52903216-52903235 | None:intergenic | 60.0% | |
| CCGTTTATGGCCACCTGGTC+CGG | - | chr7_1:52903213-52903232 | Msa1024230:CDS | 60.0% | |
| ACTACAGTTGCCGGACCAGG+TGG | + | chr7_1:52903226-52903245 | None:intergenic | 60.0% | |
| AGCACTACAGTTGCCGGACC+AGG | + | chr7_1:52903229-52903248 | None:intergenic | 60.0% | |
| GGAGCACAGGATAGAGACGG+AGG | - | chr7_1:52903399-52903418 | Msa1024230:CDS | 60.0% | |
| GCACAGGATAGAGACGGAGG+AGG | - | chr7_1:52903402-52903421 | Msa1024230:CDS | 60.0% | |
| !! | GCTCTGAGGCTCCTAACTGC+AGG | - | chr7_1:52903682-52903701 | Msa1024230:CDS | 60.0% |
| !! | GTTTCTGGTCAGTGTGGCGG+TGG | - | chr7_1:52904093-52904112 | Msa1024230:CDS | 60.0% |
| AGCAGCGGAAGAGCGAGCTG+AGG | - | chr7_1:52903470-52903489 | Msa1024230:CDS | 65.0% | |
| GCAGCGGAAGAGCGAGCTGA+GGG | - | chr7_1:52903471-52903490 | Msa1024230:CDS | 65.0% | |
| GGGTGAGGGGCTTCGAGACA+TGG | + | chr7_1:52903553-52903572 | None:intergenic | 65.0% | |
| AGCAGCGGAAGAGCGAGCTG+AGG | - | chr7_1:52903470-52903489 | Msa1024230:CDS | 65.0% | |
| GCAGCGGAAGAGCGAGCTGA+GGG | - | chr7_1:52903471-52903490 | Msa1024230:CDS | 65.0% | |
| GGGTGAGGGGCTTCGAGACA+TGG | + | chr7_1:52903553-52903572 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 52902785 | 52904503 | 52902785 | ID=Msa1024230;Name=Msa1024230 |
| chr7_1 | mRNA | 52902785 | 52904503 | 52902785 | ID=Msa1024230-mRNA-1;Parent=Msa1024230;Name=Msa1024230-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|-1|0|1|-1|1|1|0|572 |
| chr7_1 | exon | 52902785 | 52904503 | 52902785 | ID=Msa1024230-mRNA-1:exon:10544;Parent=Msa1024230-mRNA-1 |
| chr7_1 | CDS | 52902785 | 52904503 | 52902785 | ID=Msa1024230-mRNA-1:cds;Parent=Msa1024230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
