Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1025250 | XP_003623359.1 | 98.047 | 256 | 5 | 0 | 1 | 256 | 1 | 256 | 0.0 | 518 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1025250 | sp|P19976|FRI1_SOYBN | 80.800 | 250 | 47 | 1 | 1 | 250 | 1 | 249 | 1.27e-146 | 412 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1025250 | G7KT76 | 98.047 | 256 | 5 | 0 | 1 | 256 | 1 | 256 | 0.0 | 518 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0982340 | Msa1025250 | 0.812191 | 4.799758e-51 | -8.615850e-47 |
| Msa1025250 | Msa1050120 | 0.968479 | 9.797053e-129 | -8.615850e-47 |
| Msa1025250 | Msa1109340 | 0.943540 | 1.000330e-102 | -8.615850e-47 |
| Msa1025250 | Msa1152980 | 0.984041 | 2.021034e-159 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1025250 | MtrunA17_Chr7g0243241 | 98.047 | 256 | 5 | 0 | 1 | 256 | 1 | 256 | 0.0 | 518 |
| Msa1025250 | MtrunA17_Chr4g0005581 | 76.285 | 253 | 55 | 2 | 1 | 251 | 1 | 250 | 1.81e-129 | 366 |
| Msa1025250 | MtrunA17_Chr5g0437531 | 75.124 | 201 | 50 | 0 | 55 | 255 | 48 | 248 | 9.19e-107 | 309 |
| Msa1025250 | MtrunA17_Chr5g0431291 | 64.800 | 125 | 40 | 1 | 127 | 251 | 11 | 131 | 1.89e-52 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1025250 | AT5G01600.1 | 75.122 | 205 | 51 | 0 | 47 | 251 | 51 | 255 | 1.98e-114 | 329 |
| Msa1025250 | AT2G40300.1 | 64.979 | 237 | 74 | 2 | 23 | 250 | 21 | 257 | 1.82e-104 | 303 |
| Msa1025250 | AT3G11050.1 | 69.302 | 215 | 62 | 1 | 43 | 253 | 38 | 252 | 1.43e-103 | 301 |
| Msa1025250 | AT3G56090.1 | 73.196 | 194 | 52 | 0 | 57 | 250 | 62 | 255 | 6.20e-100 | 292 |
| Msa1025250 | AT3G61010.1 | 68.000 | 50 | 16 | 0 | 98 | 147 | 369 | 418 | 1.55e-15 | 75.9 |
| Msa1025250 | AT3G61010.3 | 68.000 | 50 | 16 | 0 | 98 | 147 | 369 | 418 | 1.55e-15 | 75.9 |
Find 67 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCATTGAACATGAATTTC+TGG | 0.146893 | 7_1:-55635639 | Msa1025250:CDS |
| TCTAAAGTTTCATCCTTTAA+TGG | 0.172298 | 7_1:-55637924 | Msa1025250:CDS |
| CCATGTTTGCATACTTTGAT+AGG | 0.193427 | 7_1:-55636711 | Msa1025250:CDS |
| TATTGTTCCTCAAGTTTCTT+TGG | 0.198180 | 7_1:-55637718 | Msa1025250:CDS |
| GAATTTGAGCATGTGGAAAA+AGG | 0.256169 | 7_1:-55636000 | Msa1025250:CDS |
| AATGGAATTGGCTCTGTCTT+TGG | 0.292583 | 7_1:-55635848 | Msa1025250:CDS |
| TCTGAGGGCACATTCTTGAT+AGG | 0.338948 | 7_1:+55636021 | None:intergenic |
| TGAGAGAGAAAATCCATTAA+AGG | 0.340654 | 7_1:+55637911 | None:intergenic |
| GCAGCAACGGTTCCTTTGAC+TGG | 0.348801 | 7_1:-55637792 | Msa1025250:CDS |
| TTCATTGAACATGAATTTCT+GGG | 0.384380 | 7_1:-55635638 | Msa1025250:CDS |
| AAAGAAACTTGAGGAACAAT+AGG | 0.385312 | 7_1:+55637720 | None:intergenic |
| TGAAAAGCTTATGAAATATC+AGG | 0.391882 | 7_1:-55636526 | Msa1025250:intron |
| TTGATAAAATTATGACTAGA+AGG | 0.405334 | 7_1:+55634766 | None:intergenic |
| TATTGCTGTTTGCAGGTGTT+TGG | 0.405691 | 7_1:-55635096 | Msa1025250:intron |
| ATGGGGTGGTGGAAAGGTTA+CGG | 0.415415 | 7_1:-55637820 | Msa1025250:CDS |
| CAATGAAGCTTGTCATTTGA+GGG | 0.428895 | 7_1:+55635654 | None:intergenic |
| ACATGAATTTCTGGGCGAAC+AGG | 0.446561 | 7_1:-55635630 | Msa1025250:intron |
| TGTTGAAATCAGGTTCTTCA+AGG | 0.448017 | 7_1:-55636577 | Msa1025250:intron |
| ATGTGAGAGTTGGTAAGAAA+TGG | 0.449029 | 7_1:-55637839 | Msa1025250:CDS |
| TTGCTAGTGTGACATGCATA+AGG | 0.453936 | 7_1:-55634904 | Msa1025250:three_prime_UTR |
| GGTGATATTTGAACCGTTTG+AGG | 0.456746 | 7_1:-55637769 | Msa1025250:CDS |
| TGAATCTGGAGAGGGAAAAG+TGG | 0.460084 | 7_1:+55637996 | None:intergenic |
| TGTGAGAGTTGGTAAGAAAT+GGG | 0.467347 | 7_1:-55637838 | Msa1025250:CDS |
| TGGTTGCTTGTGGATGAATC+TGG | 0.474035 | 7_1:+55637982 | None:intergenic |
| ACCGTTTGAGGAGGTTAAGA+AGG | 0.476612 | 7_1:-55637757 | Msa1025250:CDS |
| CAGCAACGGTTCCTTTGACT+GGG | 0.480434 | 7_1:-55637791 | Msa1025250:CDS |
| TCAATGAAGCTTGTCATTTG+AGG | 0.489748 | 7_1:+55635653 | None:intergenic |
| TTTGGAAATGGTGTTAAGAA+GGG | 0.492190 | 7_1:-55637882 | Msa1025250:CDS |
| CATGTTTGCATACTTTGATA+GGG | 0.500774 | 7_1:-55636710 | Msa1025250:CDS |
| TCCTTCTTAACCTCCTCAAA+CGG | 0.501812 | 7_1:+55637756 | None:intergenic |
| TAAGAAATGGGGTGGTGGAA+AGG | 0.505923 | 7_1:-55637826 | Msa1025250:CDS |
| TCAAATATCACCCCAGTCAA+AGG | 0.508905 | 7_1:+55637780 | None:intergenic |
| TAACTTGTTTAGAACGTTCG+TGG | 0.508981 | 7_1:-55636063 | Msa1025250:intron |
| TTCCACATGCTCAAATTCTG+AGG | 0.516359 | 7_1:+55636005 | None:intergenic |
| CTGAGGGCACATTCTTGATA+GGG | 0.526116 | 7_1:+55636022 | None:intergenic |
| GTGTCTCAATTGAGAAGGGT+TGG | 0.530310 | 7_1:-55635456 | Msa1025250:CDS |
| CCTATCAAAGTATGCAAACA+TGG | 0.532849 | 7_1:+55636711 | None:intergenic |
| TCATTTGAGGGTCATTGTTG+CGG | 0.541374 | 7_1:+55635666 | None:intergenic |
| TAGGGACAATGTGGCACTCA+GGG | 0.545838 | 7_1:-55636692 | Msa1025250:CDS |
| GAGTGATGAGAAAATAGAAA+TGG | 0.550748 | 7_1:+55637962 | None:intergenic |
| TCAATTGAGAAGGGTTGGAA+AGG | 0.551958 | 7_1:-55635451 | Msa1025250:CDS |
| AGAAGGGTTGGAAAGGGTCA+TGG | 0.553158 | 7_1:-55635444 | Msa1025250:intron |
| ATAGGGACAATGTGGCACTC+AGG | 0.553669 | 7_1:-55636693 | Msa1025250:CDS |
| ACGTAGACAGATAATAGTAA+AGG | 0.559991 | 7_1:+55635021 | None:intergenic |
| TCCACATGCTCAAATTCTGA+GGG | 0.560756 | 7_1:+55636006 | None:intergenic |
| CAATTGAGAAGGGTTGGAAA+GGG | 0.565267 | 7_1:-55635450 | Msa1025250:CDS |
| GTTGGTAAGAAATGGGGTGG+TGG | 0.567662 | 7_1:-55637831 | Msa1025250:CDS |
| AGCAACGGTTCCTTTGACTG+GGG | 0.569992 | 7_1:-55637790 | Msa1025250:CDS |
| GGTTACGGTTTGTGCAGCAA+CGG | 0.580360 | 7_1:-55637805 | Msa1025250:CDS |
| AGTATGTGTCTCAATTGAGA+AGG | 0.580680 | 7_1:-55635461 | Msa1025250:CDS |
| TTAACAGATGTTACTGCACA+AGG | 0.581029 | 7_1:+55634874 | None:intergenic |
| ATGACAGAGATTATTAAAAG+CGG | 0.593652 | 7_1:+55634851 | None:intergenic |
| AAAATAGAAATGGTTGCTTG+TGG | 0.596864 | 7_1:+55637972 | None:intergenic |
| CAAAGTATGCAAACATGGAG+TGG | 0.606862 | 7_1:+55636716 | None:intergenic |
| GATATTTGAACCGTTTGAGG+AGG | 0.609935 | 7_1:-55637766 | Msa1025250:CDS |
| GCCCTCAGAATTTGAGCATG+TGG | 0.613924 | 7_1:-55636007 | Msa1025250:CDS |
| TGTCTAGCCAAAGAAACTTG+AGG | 0.618586 | 7_1:+55637711 | None:intergenic |
| TGATCAAAGACTTCTTCATG+AGG | 0.628033 | 7_1:-55635068 | Msa1025250:CDS |
| GTATGTGTCTCAATTGAGAA+GGG | 0.632300 | 7_1:-55635460 | Msa1025250:CDS |
| AGAGTTGGTAAGAAATGGGG+TGG | 0.643701 | 7_1:-55637834 | Msa1025250:CDS |
| CTTGTTTAGAACGTTCGTGG+TGG | 0.666990 | 7_1:-55636060 | Msa1025250:intron |
| AAACATGGAGTGGTACACAT+AGG | 0.675664 | 7_1:+55636726 | None:intergenic |
| GTGAGAGTTGGTAAGAAATG+GGG | 0.684258 | 7_1:-55637837 | Msa1025250:CDS |
| CTTGTGGATGAATCTGGAGA+GGG | 0.688352 | 7_1:+55637988 | None:intergenic |
| AGGGACAATGTGGCACTCAG+GGG | 0.690043 | 7_1:-55636691 | Msa1025250:CDS |
| GCTTGTGGATGAATCTGGAG+AGG | 0.692024 | 7_1:+55637987 | None:intergenic |
| ATACTTTGATAGGGACAATG+TGG | 0.721777 | 7_1:-55636701 | Msa1025250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTGTTTATAAAAACAAA+AGG | + | chr7_1:55635934-55635953 | None:intergenic | 10.0% |
| !!! | TATGAATTCATATAAAATTT+TGG | - | chr7_1:55637194-55637213 | Msa1025250:intron | 10.0% |
| !! | AATCATAATTATATCTTGAT+TGG | - | chr7_1:55635336-55635355 | Msa1025250:intron | 15.0% |
| !!! | TAATTCTTTTAGAAAATTAG+AGG | + | chr7_1:55635653-55635672 | None:intergenic | 15.0% |
| !!! | TAGTTTTTAAAAATCTCAAA+TGG | - | chr7_1:55635686-55635705 | Msa1025250:intron | 15.0% |
| !!! | AGTTTTTAAAAATCTCAAAT+GGG | - | chr7_1:55635687-55635706 | Msa1025250:intron | 15.0% |
| !! | AAATATTAGTAGTACTAATT+TGG | + | chr7_1:55635714-55635733 | None:intergenic | 15.0% |
| !! | ATGTGATATATGAAATTTAT+TGG | - | chr7_1:55635756-55635775 | Msa1025250:intron | 15.0% |
| !! | TGTGATATATGAAATTTATT+GGG | - | chr7_1:55635757-55635776 | Msa1025250:intron | 15.0% |
| !! | TTTATGATTCTTAAAAATGT+TGG | + | chr7_1:55637026-55637045 | None:intergenic | 15.0% |
| !!! | CTATTTTCTTAAATTACTAT+CGG | - | chr7_1:55637542-55637561 | Msa1025250:intron | 15.0% |
| !! | AAGTAAAACTTAGCTAAAAA+TGG | + | chr7_1:55635364-55635383 | None:intergenic | 20.0% |
| !! | TGTTGATACAAATTTAGATT+TGG | - | chr7_1:55635825-55635844 | Msa1025250:CDS | 20.0% |
| !!! | ATTTTTATGTAAATTCTAGC+TGG | + | chr7_1:55635873-55635892 | None:intergenic | 20.0% |
| !! | ATGAAATTGAAAAACTGTAT+GGG | + | chr7_1:55636169-55636188 | None:intergenic | 20.0% |
| !! | AATGAAATTGAAAAACTGTA+TGG | + | chr7_1:55636170-55636189 | None:intergenic | 20.0% |
| !! | AAGCAAAAATTAGCATAATA+CGG | + | chr7_1:55636885-55636904 | None:intergenic | 20.0% |
| !! | GAAGATTTGTGAATAATAAT+AGG | - | chr7_1:55637081-55637100 | Msa1025250:intron | 20.0% |
| !! | TTTGAAAAATGAGAAAAAGT+TGG | - | chr7_1:55637220-55637239 | Msa1025250:intron | 20.0% |
| !!! | ACTACAATCATTTTTCATAT+TGG | - | chr7_1:55637371-55637390 | Msa1025250:intron | 20.0% |
| !! | TCTAAAGTTTCATCCTTTAA+TGG | - | chr7_1:55634853-55634872 | Msa1025250:three_prime_UTR | 25.0% |
| ! | TTAACACCATTTCCAAAAAT+GGG | + | chr7_1:55634892-55634911 | None:intergenic | 25.0% |
| !! | CTATAACTTTTCTAACTATG+TGG | - | chr7_1:55635249-55635268 | Msa1025250:intron | 25.0% |
| ! | CTAAGATTTAAATGGTTGAT+TGG | - | chr7_1:55635277-55635296 | Msa1025250:intron | 25.0% |
| !!! | GCTAAGTTTTACTTAATTTG+AGG | - | chr7_1:55635370-55635389 | Msa1025250:intron | 25.0% |
| ! | TTTACTCATAAGAAAGATCT+AGG | - | chr7_1:55635892-55635911 | Msa1025250:intron | 25.0% |
| !! | GTCATATTTGAGTTTATGTT+TGG | + | chr7_1:55636126-55636145 | None:intergenic | 25.0% |
| ! | GTATGGGAAATAAAATAAGA+GGG | + | chr7_1:55636153-55636172 | None:intergenic | 25.0% |
| ! | TGTATGGGAAATAAAATAAG+AGG | + | chr7_1:55636154-55636173 | None:intergenic | 25.0% |
| !!! | TTGCTTTTATTGTTGAAATC+AGG | - | chr7_1:55636190-55636209 | Msa1025250:intron | 25.0% |
| ! | TGAAAAGCTTATGAAATATC+AGG | - | chr7_1:55636251-55636270 | Msa1025250:intron | 25.0% |
| !!! | TTAAGTTAGCTTTGTACTTT+AGG | - | chr7_1:55636274-55636293 | Msa1025250:intron | 25.0% |
| !!! | TAAGTTAGCTTTGTACTTTA+GGG | - | chr7_1:55636275-55636294 | Msa1025250:intron | 25.0% |
| ! | GATTTGTGAATAATAATAGG+TGG | - | chr7_1:55637084-55637103 | Msa1025250:intron | 25.0% |
| ! | TTCATTGAACATGAATTTCT+GGG | - | chr7_1:55637139-55637158 | Msa1025250:intron | 25.0% |
| !!! | TGTAAGGGATTCATATTTTT+TGG | - | chr7_1:55637251-55637270 | Msa1025250:intron | 25.0% |
| !! | TTTGGTAATATTCTTTCTTC+AGG | - | chr7_1:55637269-55637288 | Msa1025250:intron | 25.0% |
| !!! | ACATCTTTAATTTGAAGTGT+TGG | + | chr7_1:55637452-55637471 | None:intergenic | 25.0% |
| !!! | ATTTATATATTGCTGTTTGC+AGG | - | chr7_1:55637674-55637693 | Msa1025250:CDS | 25.0% |
| ! | ATGACAGAGATTATTAAAAG+CGG | + | chr7_1:55637929-55637948 | None:intergenic | 25.0% |
| ! | TCTGTCATCAATAAAAAAAG+AGG | - | chr7_1:55637941-55637960 | Msa1025250:CDS | 25.0% |
| AAAATAGAAATGGTTGCTTG+TGG | + | chr7_1:55634808-55634827 | None:intergenic | 30.0% | |
| GAGTGATGAGAAAATAGAAA+TGG | + | chr7_1:55634818-55634837 | None:intergenic | 30.0% | |
| ! | TTCTATTTTCTCATCACTCA+TGG | - | chr7_1:55634819-55634838 | Msa1025250:three_prime_UTR | 30.0% |
| TGAGAGAGAAAATCCATTAA+AGG | + | chr7_1:55634869-55634888 | None:intergenic | 30.0% | |
| CTTAACACCATTTCCAAAAA+TGG | + | chr7_1:55634893-55634912 | None:intergenic | 30.0% | |
| !! | TTTTGGAAATGGTGTTAAGA+AGG | - | chr7_1:55634894-55634913 | Msa1025250:three_prime_UTR | 30.0% |
| ! | TTTGGAAATGGTGTTAAGAA+GGG | - | chr7_1:55634895-55634914 | Msa1025250:three_prime_UTR | 30.0% |
| AAAGAAACTTGAGGAACAAT+AGG | + | chr7_1:55635060-55635079 | None:intergenic | 30.0% | |
| TATTGTTCCTCAAGTTTCTT+TGG | - | chr7_1:55635059-55635078 | Msa1025250:CDS | 30.0% | |
| ! | AACTTTTCTAACTATGTGGT+TGG | - | chr7_1:55635253-55635272 | Msa1025250:intron | 30.0% |
| TGGTTGGACTAAGATTTAAA+TGG | - | chr7_1:55635269-55635288 | Msa1025250:intron | 30.0% | |
| ! | TTTTAATCCTCCAATTTCCA+AGG | + | chr7_1:55635420-55635439 | None:intergenic | 30.0% |
| ATGTACTTGCTCATCAAAAT+TGG | + | chr7_1:55635511-55635530 | None:intergenic | 30.0% | |
| GAAATTTATTGGGATCAAGT+TGG | - | chr7_1:55635767-55635786 | Msa1025250:intron | 30.0% | |
| ! | TTTTCTTCTTTTGCATGCAT+TGG | - | chr7_1:55635955-55635974 | Msa1025250:intron | 30.0% |
| TCACTTAGCATAGTAACAAT+GGG | + | chr7_1:55635990-55636009 | None:intergenic | 30.0% | |
| ATCACTTAGCATAGTAACAA+TGG | + | chr7_1:55635991-55636010 | None:intergenic | 30.0% | |
| CATGTTTGCATACTTTGATA+GGG | - | chr7_1:55636067-55636086 | Msa1025250:intron | 30.0% | |
| GAGGTAAGTAAGTTCAAATA+AGG | + | chr7_1:55636314-55636333 | None:intergenic | 30.0% | |
| CTTCATAGTGTAACACTATT+TGG | - | chr7_1:55636515-55636534 | Msa1025250:intron | 30.0% | |
| AATTTGAGCATGTGGAAAAA+GGG | - | chr7_1:55636778-55636797 | Msa1025250:intron | 30.0% | |
| ! | TGTCTCACACATTATAGTTT+TGG | - | chr7_1:55636840-55636859 | Msa1025250:intron | 30.0% |
| !! | TATTCCTTTTGTTTCAGCAA+TGG | - | chr7_1:55636911-55636930 | Msa1025250:intron | 30.0% |
| AATTCCATTGCTGAAACAAA+AGG | + | chr7_1:55636918-55636937 | None:intergenic | 30.0% | |
| !! | TTTTGTTTCAGCAATGGAAT+TGG | - | chr7_1:55636917-55636936 | Msa1025250:intron | 30.0% |
| TATTTGATCTGTAGTTGTCA+AGG | - | chr7_1:55637047-55637066 | Msa1025250:intron | 30.0% | |
| TTGTGAATAATAATAGGTGG+CGG | - | chr7_1:55637087-55637106 | Msa1025250:intron | 30.0% | |
| CTTCATTGAACATGAATTTC+TGG | - | chr7_1:55637138-55637157 | Msa1025250:intron | 30.0% | |
| ! | AAAGTTGGTTTAGCAATGTA+AGG | - | chr7_1:55637235-55637254 | Msa1025250:intron | 30.0% |
| ! | AAGTTGGTTTAGCAATGTAA+GGG | - | chr7_1:55637236-55637255 | Msa1025250:intron | 30.0% |
| ! | ATTGATAGGTGTTATGTGTA+TGG | + | chr7_1:55637410-55637429 | None:intergenic | 30.0% |
| CATAGATCGTACTAATTGAT+AGG | + | chr7_1:55637424-55637443 | None:intergenic | 30.0% | |
| TATCATGTATGTGTTGTATC+TGG | - | chr7_1:55637575-55637594 | Msa1025250:intron | 30.0% | |
| ACGTAGACAGATAATAGTAA+AGG | + | chr7_1:55637759-55637778 | None:intergenic | 30.0% | |
| ! | TTTTCTCTCTCACCCATTTT+TGG | - | chr7_1:55634877-55634896 | Msa1025250:three_prime_UTR | 35.0% |
| ! | TCTTTTTGTGATGTGAGAGT+TGG | - | chr7_1:55634928-55634947 | Msa1025250:three_prime_UTR | 35.0% |
| !! | ATGTGAGAGTTGGTAAGAAA+TGG | - | chr7_1:55634938-55634957 | Msa1025250:three_prime_UTR | 35.0% |
| !! | TGTGAGAGTTGGTAAGAAAT+GGG | - | chr7_1:55634939-55634958 | Msa1025250:three_prime_UTR | 35.0% |
| CTAGATTACCAATGATTCCT+TGG | - | chr7_1:55635400-55635419 | Msa1025250:intron | 35.0% | |
| ACCAATGATTCCTTGGAAAT+TGG | - | chr7_1:55635407-55635426 | Msa1025250:intron | 35.0% | |
| TCCAATTTCCAAGGAATCAT+TGG | + | chr7_1:55635411-55635430 | None:intergenic | 35.0% | |
| AATGATTCCTTGGAAATTGG+AGG | - | chr7_1:55635410-55635429 | Msa1025250:intron | 35.0% | |
| GAGGAAATCAAATTTGTGTG+TGG | + | chr7_1:55635483-55635502 | None:intergenic | 35.0% | |
| CTCATCAAAATTGGCATTAG+AGG | + | chr7_1:55635502-55635521 | None:intergenic | 35.0% | |
| !!! | AGTTGTGCTCTAGTTTTAAG+CGG | - | chr7_1:55635535-55635554 | Msa1025250:intron | 35.0% |
| !! | ATTGGTCCTATTGGATTAGT+CGG | - | chr7_1:55635582-55635601 | Msa1025250:intron | 35.0% |
| CAAAAACCGACTAATCCAAT+AGG | + | chr7_1:55635591-55635610 | None:intergenic | 35.0% | |
| !!! | CTATTGGATTAGTCGGTTTT+TGG | - | chr7_1:55635589-55635608 | Msa1025250:intron | 35.0% |
| ! | TTTTCATTTGTGTGACAGTG+TGG | - | chr7_1:55636016-55636035 | Msa1025250:CDS | 35.0% |
| CCTATCAAAGTATGCAAACA+TGG | + | chr7_1:55636069-55636088 | None:intergenic | 35.0% | |
| CCATGTTTGCATACTTTGAT+AGG | - | chr7_1:55636066-55636085 | Msa1025250:intron | 35.0% | |
| ATACTTTGATAGGGACAATG+TGG | - | chr7_1:55636076-55636095 | Msa1025250:intron | 35.0% | |
| TGTTGAAATCAGGTTCTTCA+AGG | - | chr7_1:55636200-55636219 | Msa1025250:intron | 35.0% | |
| GGTCTTACAAGTACTTATTG+AGG | + | chr7_1:55636333-55636352 | None:intergenic | 35.0% | |
| TATGAAGCACAAACACTCAT+CGG | + | chr7_1:55636502-55636521 | None:intergenic | 35.0% | |
| AATAAGCTGAAAACAACTCG+TGG | + | chr7_1:55636571-55636590 | None:intergenic | 35.0% | |
| CTTATTTCCATAAGCTCTTC+AGG | - | chr7_1:55636585-55636604 | Msa1025250:intron | 35.0% | |
| ! | CTTTTAGTCAAGCAAATGTC+TGG | + | chr7_1:55636648-55636667 | None:intergenic | 35.0% |
| !! | TAACTTGTTTAGAACGTTCG+TGG | - | chr7_1:55636714-55636733 | Msa1025250:CDS | 35.0% |
| GAATTTGAGCATGTGGAAAA+AGG | - | chr7_1:55636777-55636796 | Msa1025250:intron | 35.0% | |
| ATTTGAGCATGTGGAAAAAG+GGG | - | chr7_1:55636779-55636798 | Msa1025250:intron | 35.0% | |
| TGCTGAAACAAAAGGAATAG+AGG | + | chr7_1:55636910-55636929 | None:intergenic | 35.0% | |
| AAAAAGCTAAAGGGACAAAG+AGG | + | chr7_1:55636999-55637018 | None:intergenic | 35.0% | |
| GTTGGCAAGAAAAAGCTAAA+GGG | + | chr7_1:55637008-55637027 | None:intergenic | 35.0% | |
| TGTTGGCAAGAAAAAGCTAA+AGG | + | chr7_1:55637009-55637028 | None:intergenic | 35.0% | |
| ! | CAATGAAGCTTGTCATTTGA+GGG | + | chr7_1:55637126-55637145 | None:intergenic | 35.0% |
| ! | TCAATGAAGCTTGTCATTTG+AGG | + | chr7_1:55637127-55637146 | None:intergenic | 35.0% |
| AGTATGTGTCTCAATTGAGA+AGG | - | chr7_1:55637316-55637335 | Msa1025250:intron | 35.0% | |
| GTATGTGTCTCAATTGAGAA+GGG | - | chr7_1:55637317-55637336 | Msa1025250:intron | 35.0% | |
| ATATCAGACAGTTTCTGTGT+CGG | + | chr7_1:55637484-55637503 | None:intergenic | 35.0% | |
| TGATCAAAGACTTCTTCATG+AGG | - | chr7_1:55637709-55637728 | Msa1025250:CDS | 35.0% | |
| ! | TTGATCTTTTGTCAAGTGCT+TGG | - | chr7_1:55637779-55637798 | Msa1025250:CDS | 35.0% |
| TTAACAGATGTTACTGCACA+AGG | + | chr7_1:55637906-55637925 | None:intergenic | 35.0% | |
| !! | CTCTCACCCATTTTTGGAAA+TGG | - | chr7_1:55634883-55634902 | Msa1025250:three_prime_UTR | 40.0% |
| !! | GTGAGAGTTGGTAAGAAATG+GGG | - | chr7_1:55634940-55634959 | Msa1025250:three_prime_UTR | 40.0% |
| TCAAATATCACCCCAGTCAA+AGG | + | chr7_1:55635000-55635019 | None:intergenic | 40.0% | |
| GGTGATATTTGAACCGTTTG+AGG | - | chr7_1:55635008-55635027 | Msa1025250:three_prime_UTR | 40.0% | |
| GATATTTGAACCGTTTGAGG+AGG | - | chr7_1:55635011-55635030 | Msa1025250:three_prime_UTR | 40.0% | |
| TCCTTCTTAACCTCCTCAAA+CGG | + | chr7_1:55635024-55635043 | None:intergenic | 40.0% | |
| TGTCTAGCCAAAGAAACTTG+AGG | + | chr7_1:55635069-55635088 | None:intergenic | 40.0% | |
| !!! | GTTGTGCTCTAGTTTTAAGC+GGG | - | chr7_1:55635536-55635555 | Msa1025250:intron | 40.0% |
| !!! | TTGTGCTCTAGTTTTAAGCG+GGG | - | chr7_1:55635537-55635556 | Msa1025250:intron | 40.0% |
| GGATAAATACACTCCACTCA+AGG | - | chr7_1:55635846-55635865 | Msa1025250:CDS | 40.0% | |
| AAACATGGAGTGGTACACAT+AGG | + | chr7_1:55636054-55636073 | None:intergenic | 40.0% | |
| CAAAGTATGCAAACATGGAG+TGG | + | chr7_1:55636064-55636083 | None:intergenic | 40.0% | |
| !! | TAGCTTTGTACTTTAGGGTC+TGG | - | chr7_1:55636280-55636299 | Msa1025250:intron | 40.0% |
| CTTGTAAGACCTATGAAGCA+CGG | - | chr7_1:55636342-55636361 | Msa1025250:intron | 40.0% | |
| TTCAGTGTGATCACATGTGT+CGG | - | chr7_1:55636423-55636442 | Msa1025250:intron | 40.0% | |
| AAACTGTCCTGAAGAGCTTA+TGG | + | chr7_1:55636595-55636614 | None:intergenic | 40.0% | |
| TCCACATGCTCAAATTCTGA+GGG | + | chr7_1:55636774-55636793 | None:intergenic | 40.0% | |
| TTCCACATGCTCAAATTCTG+AGG | + | chr7_1:55636775-55636794 | None:intergenic | 40.0% | |
| ! | TTGCATGGTGAGTTTGTTTC+TGG | - | chr7_1:55636807-55636826 | Msa1025250:intron | 40.0% |
| !! | AATGGAATTGGCTCTGTCTT+TGG | - | chr7_1:55636929-55636948 | Msa1025250:intron | 40.0% |
| TCATTTGAGGGTCATTGTTG+CGG | + | chr7_1:55637114-55637133 | None:intergenic | 40.0% | |
| TCAATTGAGAAGGGTTGGAA+AGG | - | chr7_1:55637326-55637345 | Msa1025250:intron | 40.0% | |
| CAATTGAGAAGGGTTGGAAA+GGG | - | chr7_1:55637327-55637346 | Msa1025250:intron | 40.0% | |
| TATGTGTATGGCGAAGTTTG+TGG | + | chr7_1:55637398-55637417 | None:intergenic | 40.0% | |
| GTATGATACTTCCTCCTATG+TGG | - | chr7_1:55637627-55637646 | Msa1025250:intron | 40.0% | |
| !! | TATTGCTGTTTGCAGGTGTT+TGG | - | chr7_1:55637681-55637700 | Msa1025250:CDS | 40.0% |
| TTGCTAGTGTGACATGCATA+AGG | - | chr7_1:55637873-55637892 | Msa1025250:CDS | 40.0% | |
| TGAATCTGGAGAGGGAAAAG+TGG | + | chr7_1:55634784-55634803 | None:intergenic | 45.0% | |
| CTTGTGGATGAATCTGGAGA+GGG | + | chr7_1:55634792-55634811 | None:intergenic | 45.0% | |
| TGGTTGCTTGTGGATGAATC+TGG | + | chr7_1:55634798-55634817 | None:intergenic | 45.0% | |
| !! | AGAGTTGGTAAGAAATGGGG+TGG | - | chr7_1:55634943-55634962 | Msa1025250:three_prime_UTR | 45.0% |
| !! | TAAGAAATGGGGTGGTGGAA+AGG | - | chr7_1:55634951-55634970 | Msa1025250:three_prime_UTR | 45.0% |
| ACCGTTTGAGGAGGTTAAGA+AGG | - | chr7_1:55635020-55635039 | Msa1025250:three_prime_UTR | 45.0% | |
| !!! | TGTGCTCTAGTTTTAAGCGG+GGG | - | chr7_1:55635538-55635557 | Msa1025250:intron | 45.0% |
| ! | AATTCTAGCTGGACCTTGAG+TGG | + | chr7_1:55635862-55635881 | None:intergenic | 45.0% |
| AGACCTATGAAGCACGGATA+CGG | - | chr7_1:55636348-55636367 | Msa1025250:intron | 45.0% | |
| ! | CTTGTTTAGAACGTTCGTGG+TGG | - | chr7_1:55636717-55636736 | Msa1025250:CDS | 45.0% |
| ! | CTGAGGGCACATTCTTGATA+GGG | + | chr7_1:55636758-55636777 | None:intergenic | 45.0% |
| ! | TCTGAGGGCACATTCTTGAT+AGG | + | chr7_1:55636759-55636778 | None:intergenic | 45.0% |
| GAAAAAGGGGATGCATTGCA+TGG | - | chr7_1:55636792-55636811 | Msa1025250:intron | 45.0% | |
| ! | ACATGAATTTCTGGGCGAAC+AGG | - | chr7_1:55637147-55637166 | Msa1025250:intron | 45.0% |
| GTGTCTCAATTGAGAAGGGT+TGG | - | chr7_1:55637321-55637340 | Msa1025250:intron | 45.0% | |
| GTCTGATATAGACACATGCG+TGG | - | chr7_1:55637495-55637514 | Msa1025250:intron | 45.0% | |
| TGATACTTCCTCCTATGTGG+TGG | - | chr7_1:55637630-55637649 | Msa1025250:intron | 45.0% | |
| !! | CTTAAGAGTGTCCACCACAT+AGG | + | chr7_1:55637644-55637663 | None:intergenic | 45.0% |
| GCTTGTGGATGAATCTGGAG+AGG | + | chr7_1:55634793-55634812 | None:intergenic | 50.0% | |
| ! | GTTGGTAAGAAATGGGGTGG+TGG | - | chr7_1:55634946-55634965 | Msa1025250:three_prime_UTR | 50.0% |
| !! | ATGGGGTGGTGGAAAGGTTA+CGG | - | chr7_1:55634957-55634976 | Msa1025250:three_prime_UTR | 50.0% |
| GGTTACGGTTTGTGCAGCAA+CGG | - | chr7_1:55634972-55634991 | Msa1025250:three_prime_UTR | 50.0% | |
| CAGCAACGGTTCCTTTGACT+GGG | - | chr7_1:55634986-55635005 | Msa1025250:three_prime_UTR | 50.0% | |
| AGCAACGGTTCCTTTGACTG+GGG | - | chr7_1:55634987-55635006 | Msa1025250:three_prime_UTR | 50.0% | |
| ATAGGGACAATGTGGCACTC+AGG | - | chr7_1:55636084-55636103 | Msa1025250:intron | 50.0% | |
| TAGGGACAATGTGGCACTCA+GGG | - | chr7_1:55636085-55636104 | Msa1025250:intron | 50.0% | |
| TGTCCGTATCCGTGCTTCAT+AGG | + | chr7_1:55636354-55636373 | None:intergenic | 50.0% | |
| GTCAGCGTTCATGTCGTGTA+CGG | + | chr7_1:55636377-55636396 | None:intergenic | 50.0% | |
| GCACAAACACTCATCGGATC+AGG | + | chr7_1:55636496-55636515 | None:intergenic | 50.0% | |
| GCCCTCAGAATTTGAGCATG+TGG | - | chr7_1:55636770-55636789 | Msa1025250:intron | 50.0% | |
| AGAAGGGTTGGAAAGGGTCA+TGG | - | chr7_1:55637333-55637352 | Msa1025250:intron | 50.0% | |
| !! | AAGAGTGTCCACCACATAGG+AGG | + | chr7_1:55637641-55637660 | None:intergenic | 50.0% |
| GCAGCAACGGTTCCTTTGAC+TGG | - | chr7_1:55634985-55635004 | Msa1025250:three_prime_UTR | 55.0% | |
| AATCACACCGCCCATTTGCG+GGG | + | chr7_1:55635565-55635584 | None:intergenic | 55.0% | |
| CAATCACACCGCCCATTTGC+GGG | + | chr7_1:55635566-55635585 | None:intergenic | 55.0% | |
| CCAATCACACCGCCCATTTG+CGG | + | chr7_1:55635567-55635586 | None:intergenic | 55.0% | |
| ! | GGCGGTGTGATTGGTCCTAT+TGG | - | chr7_1:55635573-55635592 | Msa1025250:intron | 55.0% |
| AGGGACAATGTGGCACTCAG+GGG | - | chr7_1:55636086-55636105 | Msa1025250:intron | 55.0% | |
| !! | CACATGTGTCGGTGTCGTGT+CGG | - | chr7_1:55636434-55636453 | Msa1025250:intron | 55.0% |
| CCGCAAATGGGCGGTGTGAT+TGG | - | chr7_1:55635564-55635583 | Msa1025250:intron | 60.0% | |
| !! | TGTCGGTGTCGTGTCGGTGT+TGG | - | chr7_1:55636440-55636459 | Msa1025250:intron | 60.0% |
| TCATCGGATCAGGCGTGTCC+CGG | + | chr7_1:55636486-55636505 | None:intergenic | 60.0% | |
| TAAGCGGGGGACCCCGCAAA+TGG | - | chr7_1:55635551-55635570 | Msa1025250:intron | 65.0% | |
| AAGCGGGGGACCCCGCAAAT+GGG | - | chr7_1:55635552-55635571 | Msa1025250:intron | 65.0% | |
| CACCGATGCGTGTCCGACAC+CGG | - | chr7_1:55636464-55636483 | Msa1025250:intron | 65.0% | |
| ACCGATGCGTGTCCGACACC+GGG | - | chr7_1:55636465-55636484 | Msa1025250:intron | 65.0% | |
| ! | TCCCGGTGTCGGACACGCAT+CGG | + | chr7_1:55636469-55636488 | None:intergenic | 65.0% |
| GATCAGGCGTGTCCCGGTGT+CGG | + | chr7_1:55636480-55636499 | None:intergenic | 65.0% | |
| CGGGGGACCCCGCAAATGGG+CGG | - | chr7_1:55635555-55635574 | Msa1025250:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 55634781 | 55638018 | 55634781 | ID=Msa1025250;Name=Msa1025250 |
| chr7_1 | mRNA | 55634781 | 55638018 | 55634781 | ID=Msa1025250-mRNA-1;Parent=Msa1025250;Name=Msa1025250-mRNA-1;_AED=0.20;_eAED=0.20;_QI=57|1|1|1|1|1|8|273|256 |
| chr7_1 | exon | 55634781 | 55635103 | 55634781 | ID=Msa1025250-mRNA-1:exon:11140;Parent=Msa1025250-mRNA-1 |
| chr7_1 | exon | 55635445 | 55635508 | 55635445 | ID=Msa1025250-mRNA-1:exon:11139;Parent=Msa1025250-mRNA-1 |
| chr7_1 | exon | 55635631 | 55635696 | 55635631 | ID=Msa1025250-mRNA-1:exon:11138;Parent=Msa1025250-mRNA-1 |
| chr7_1 | exon | 55635810 | 55635871 | 55635810 | ID=Msa1025250-mRNA-1:exon:11137;Parent=Msa1025250-mRNA-1 |
| chr7_1 | exon | 55635986 | 55636073 | 55635986 | ID=Msa1025250-mRNA-1:exon:11136;Parent=Msa1025250-mRNA-1 |
| chr7_1 | exon | 55636527 | 55636587 | 55636527 | ID=Msa1025250-mRNA-1:exon:11135;Parent=Msa1025250-mRNA-1 |
| chr7_1 | exon | 55636682 | 55636765 | 55636682 | ID=Msa1025250-mRNA-1:exon:11134;Parent=Msa1025250-mRNA-1 |
| chr7_1 | exon | 55637666 | 55638018 | 55637666 | ID=Msa1025250-mRNA-1:exon:11133;Parent=Msa1025250-mRNA-1 |
| chr7_1 | five_prime_UTR | 55637962 | 55638018 | 55637962 | ID=Msa1025250-mRNA-1:five_prime_utr;Parent=Msa1025250-mRNA-1 |
| chr7_1 | CDS | 55637666 | 55637961 | 55637666 | ID=Msa1025250-mRNA-1:cds;Parent=Msa1025250-mRNA-1 |
| chr7_1 | CDS | 55636682 | 55636765 | 55636682 | ID=Msa1025250-mRNA-1:cds;Parent=Msa1025250-mRNA-1 |
| chr7_1 | CDS | 55636527 | 55636587 | 55636527 | ID=Msa1025250-mRNA-1:cds;Parent=Msa1025250-mRNA-1 |
| chr7_1 | CDS | 55635986 | 55636073 | 55635986 | ID=Msa1025250-mRNA-1:cds;Parent=Msa1025250-mRNA-1 |
| chr7_1 | CDS | 55635810 | 55635871 | 55635810 | ID=Msa1025250-mRNA-1:cds;Parent=Msa1025250-mRNA-1 |
| chr7_1 | CDS | 55635631 | 55635696 | 55635631 | ID=Msa1025250-mRNA-1:cds;Parent=Msa1025250-mRNA-1 |
| chr7_1 | CDS | 55635445 | 55635508 | 55635445 | ID=Msa1025250-mRNA-1:cds;Parent=Msa1025250-mRNA-1 |
| chr7_1 | CDS | 55635054 | 55635103 | 55635054 | ID=Msa1025250-mRNA-1:cds;Parent=Msa1025250-mRNA-1 |
| chr7_1 | three_prime_UTR | 55634781 | 55635053 | 55634781 | ID=Msa1025250-mRNA-1:three_prime_utr;Parent=Msa1025250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
