Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1050120 | XP_003623359.1 | 98.047 | 256 | 5 | 0 | 1 | 256 | 1 | 256 | 0.0 | 518 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1050120 | sp|P19975|FRI1_PEA | 84.314 | 255 | 37 | 1 | 1 | 255 | 1 | 252 | 2.51e-147 | 414 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1050120 | G7KT76 | 98.047 | 256 | 5 | 0 | 1 | 256 | 1 | 256 | 0.0 | 518 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000610 | Msa1050120 | -0.804866 | 1.758398e-49 | -8.615850e-47 |
| Msa0011920 | Msa1050120 | -0.803888 | 2.812107e-49 | -8.615850e-47 |
| Msa0052780 | Msa1050120 | 0.813905 | 2.020214e-51 | -8.615850e-47 |
| Msa0067590 | Msa1050120 | -0.804551 | 2.045751e-49 | -8.615850e-47 |
| Msa0090060 | Msa1050120 | -0.801526 | 8.637660e-49 | -8.615850e-47 |
| Msa0097570 | Msa1050120 | 0.814728 | 1.328902e-51 | -8.615850e-47 |
| Msa0112880 | Msa1050120 | -0.807131 | 5.872011e-50 | -8.615850e-47 |
| Msa0626920 | Msa1050120 | 0.803681 | 3.103645e-49 | -8.615850e-47 |
| Msa0638030 | Msa1050120 | -0.804389 | 2.211696e-49 | -8.615850e-47 |
| Msa0683200 | Msa1050120 | -0.812790 | 3.551215e-51 | -8.615850e-47 |
| Msa0127910 | Msa1050120 | -0.802825 | 4.669053e-49 | -8.615850e-47 |
| Msa0159240 | Msa1050120 | -0.810651 | 1.036705e-50 | -8.615850e-47 |
| Msa0183960 | Msa1050120 | -0.803340 | 3.653341e-49 | -8.615850e-47 |
| Msa0186400 | Msa1050120 | -0.819232 | 1.293695e-52 | -8.615850e-47 |
| Msa0195810 | Msa1050120 | -0.811892 | 5.577947e-51 | -8.615850e-47 |
| Msa0385850 | Msa1050120 | -0.800754 | 1.242532e-48 | -8.615850e-47 |
| Msa0390590 | Msa1050120 | -0.801535 | 8.601790e-49 | -8.615850e-47 |
| Msa0399810 | Msa1050120 | 0.806720 | 7.172371e-50 | -8.615850e-47 |
| Msa0982340 | Msa1050120 | 0.805030 | 1.625127e-49 | -8.615850e-47 |
| Msa1025250 | Msa1050120 | 0.968479 | 9.797053e-129 | -8.615850e-47 |
| Msa1050120 | Msa1109340 | 0.947295 | 8.875004e-106 | -8.615850e-47 |
| Msa1050120 | Msa1121720 | -0.801338 | 9.437200e-49 | -8.615850e-47 |
| Msa1050120 | Msa1152980 | 0.974418 | 4.025440e-138 | -8.615850e-47 |
| Msa1050120 | Msa1173150 | 0.813393 | 2.618691e-51 | -8.615850e-47 |
| Msa1050120 | Msa1356100 | -0.801311 | 9.561288e-49 | -8.615850e-47 |
| Msa1050120 | Msa1429380 | -0.808358 | 3.221869e-50 | -8.615850e-47 |
| Msa1050120 | Msa1443220 | 0.806617 | 7.540972e-50 | -8.615850e-47 |
| Msa0275250 | Msa1050120 | -0.804307 | 2.300698e-49 | -8.615850e-47 |
| Msa0294200 | Msa1050120 | 0.805614 | 1.226093e-49 | -8.615850e-47 |
| Msa0315720 | Msa1050120 | -0.807767 | 4.303920e-50 | -8.615850e-47 |
| Msa0523420 | Msa1050120 | -0.818788 | 1.633040e-52 | -8.615850e-47 |
| Msa0578410 | Msa1050120 | 0.800544 | 1.371536e-48 | -8.615850e-47 |
| Msa0578460 | Msa1050120 | 0.804024 | 2.634859e-49 | -8.615850e-47 |
| Msa0588110 | Msa1050120 | -0.800400 | 1.467110e-48 | -8.615850e-47 |
| Msa0602320 | Msa1050120 | -0.800345 | 1.505732e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1050120 | MtrunA17_Chr7g0243241 | 98.047 | 256 | 5 | 0 | 1 | 256 | 1 | 256 | 0.0 | 518 |
| Msa1050120 | MtrunA17_Chr4g0005581 | 76.285 | 253 | 55 | 2 | 1 | 251 | 1 | 250 | 1.38e-129 | 367 |
| Msa1050120 | MtrunA17_Chr5g0437531 | 75.124 | 201 | 50 | 0 | 55 | 255 | 48 | 248 | 1.08e-106 | 308 |
| Msa1050120 | MtrunA17_Chr5g0431291 | 65.323 | 124 | 39 | 1 | 127 | 250 | 11 | 130 | 2.61e-52 | 166 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1050120 | AT5G01600.1 | 75.122 | 205 | 51 | 0 | 47 | 251 | 51 | 255 | 2.10e-114 | 328 |
| Msa1050120 | AT2G40300.1 | 70.388 | 206 | 61 | 0 | 45 | 250 | 52 | 257 | 5.03e-104 | 303 |
| Msa1050120 | AT3G11050.1 | 69.302 | 215 | 62 | 1 | 43 | 253 | 38 | 252 | 2.14e-103 | 301 |
| Msa1050120 | AT3G56090.1 | 73.196 | 194 | 52 | 0 | 57 | 250 | 62 | 255 | 6.33e-100 | 292 |
| Msa1050120 | AT3G61010.1 | 68.000 | 50 | 16 | 0 | 98 | 147 | 369 | 418 | 1.52e-15 | 75.9 |
| Msa1050120 | AT3G61010.3 | 68.000 | 50 | 16 | 0 | 98 | 147 | 369 | 418 | 1.52e-15 | 75.9 |
Find 67 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCATTGAACATGAATTTC+TGG | 0.146893 | 7_2:-13993832 | Msa1050120:CDS |
| TCTAAAGTTTCATCCTTTAA+TGG | 0.172298 | 7_2:-13996107 | Msa1050120:CDS |
| TATTGTTCCTCAAGTTTCTT+TGG | 0.188521 | 7_2:-13995901 | Msa1050120:CDS |
| CCATGTTTGCATACTTTGAT+AGG | 0.193427 | 7_2:-13994903 | Msa1050120:CDS |
| GAATTTGAGCATGTGGAAAA+AGG | 0.256169 | 7_2:-13994192 | Msa1050120:CDS |
| CTTAACACCATTTCCTGAAA+TGG | 0.266815 | 7_2:+13996070 | None:intergenic |
| AATGGAATTGGCTCTGTCTT+TGG | 0.292583 | 7_2:-13994041 | Msa1050120:CDS |
| CTCTCACCCATTTCAGGAAA+TGG | 0.309427 | 7_2:-13996077 | Msa1050120:CDS |
| TCTGAGGGCACATTCTTGAT+AGG | 0.338948 | 7_2:+13994213 | None:intergenic |
| TGAGAGAGAAAATCCATTAA+AGG | 0.340654 | 7_2:+13996094 | None:intergenic |
| GCAGCAACGGTTCCTTTGAC+TGG | 0.348801 | 7_2:-13995975 | Msa1050120:CDS |
| TTCATTGAACATGAATTTCT+GGG | 0.384380 | 7_2:-13993831 | Msa1050120:CDS |
| AAAGAAACTTGAGGAACAAT+AGG | 0.385312 | 7_2:+13995903 | None:intergenic |
| TGAAAAGCTTATGAAATATC+AGG | 0.391882 | 7_2:-13994718 | Msa1050120:intron |
| TTGATAAAATTATGACTAGA+AGG | 0.405334 | 7_2:+13992959 | None:intergenic |
| TATTGCTGTTTGCAGGTGTT+TGG | 0.405691 | 7_2:-13993289 | Msa1050120:intron |
| TTAACACCATTTCCTGAAAT+GGG | 0.412377 | 7_2:+13996071 | None:intergenic |
| ATGGGGTGGTGGAAAGGTTA+CGG | 0.415415 | 7_2:-13996003 | Msa1050120:CDS |
| TATGAGAGTTGGTAAGAAAT+GGG | 0.419339 | 7_2:-13996021 | Msa1050120:CDS |
| CAATGAAGCTTGTCATTTGA+GGG | 0.428895 | 7_2:+13993847 | None:intergenic |
| TTCAGGAAATGGTGTTAAGA+AGG | 0.436178 | 7_2:-13996066 | Msa1050120:CDS |
| ACATGAATTTCTGGGCGAAC+AGG | 0.446561 | 7_2:-13993823 | Msa1050120:intron |
| TGTTGAAATCAGGTTCTTCA+AGG | 0.448017 | 7_2:-13994769 | Msa1050120:intron |
| ATATGAGAGTTGGTAAGAAA+TGG | 0.448119 | 7_2:-13996022 | Msa1050120:CDS |
| TTGCTAGTGTGACATGCATA+AGG | 0.453936 | 7_2:-13993097 | Msa1050120:three_prime_UTR |
| GGTGATATTTGAACCGTTTG+AGG | 0.456746 | 7_2:-13995952 | Msa1050120:CDS |
| ACCGTTTGAGGAGGTTAAGA+AGG | 0.476612 | 7_2:-13995940 | Msa1050120:CDS |
| CAGCAACGGTTCCTTTGACT+GGG | 0.480434 | 7_2:-13995974 | Msa1050120:CDS |
| TCAATGAAGCTTGTCATTTG+AGG | 0.489748 | 7_2:+13993846 | None:intergenic |
| CATGTTTGCATACTTTGATA+GGG | 0.500774 | 7_2:-13994902 | Msa1050120:CDS |
| TCCTTCTTAACCTCCTCAAA+CGG | 0.501812 | 7_2:+13995939 | None:intergenic |
| TAAGAAATGGGGTGGTGGAA+AGG | 0.505923 | 7_2:-13996009 | Msa1050120:CDS |
| TCAAATATCACCCCAGTCAA+AGG | 0.508905 | 7_2:+13995963 | None:intergenic |
| TAACTTGTTTAGAACGTTCG+TGG | 0.508981 | 7_2:-13994255 | Msa1050120:intron |
| TTCCACATGCTCAAATTCTG+AGG | 0.516359 | 7_2:+13994197 | None:intergenic |
| CTGAGGGCACATTCTTGATA+GGG | 0.526116 | 7_2:+13994214 | None:intergenic |
| GTGTCTCAATTGAGAAGGGT+TGG | 0.530310 | 7_2:-13993649 | Msa1050120:CDS |
| CCTATCAAAGTATGCAAACA+TGG | 0.532849 | 7_2:+13994903 | None:intergenic |
| TCAGGAAATGGTGTTAAGAA+GGG | 0.536012 | 7_2:-13996065 | Msa1050120:CDS |
| TCATTTGAGGGTCATTGTTG+CGG | 0.541374 | 7_2:+13993859 | None:intergenic |
| TAGGGACAATGTGGCACTCA+GGG | 0.545838 | 7_2:-13994884 | Msa1050120:CDS |
| GAGTGATGAGAAAATAGAAA+TGG | 0.550748 | 7_2:+13996145 | None:intergenic |
| TCAATTGAGAAGGGTTGGAA+AGG | 0.551958 | 7_2:-13993644 | Msa1050120:CDS |
| AGAAGGGTTGGAAAGGGTCA+TGG | 0.553158 | 7_2:-13993637 | Msa1050120:intron |
| ATAGGGACAATGTGGCACTC+AGG | 0.553669 | 7_2:-13994885 | Msa1050120:CDS |
| ACGTAGACAGATAATAGTAA+AGG | 0.559991 | 7_2:+13993214 | None:intergenic |
| TCCACATGCTCAAATTCTGA+GGG | 0.560756 | 7_2:+13994198 | None:intergenic |
| CAATTGAGAAGGGTTGGAAA+GGG | 0.565267 | 7_2:-13993643 | Msa1050120:CDS |
| GTTGGTAAGAAATGGGGTGG+TGG | 0.567662 | 7_2:-13996014 | Msa1050120:CDS |
| AGCAACGGTTCCTTTGACTG+GGG | 0.569992 | 7_2:-13995973 | Msa1050120:CDS |
| GGTTACGGTTTGTGCAGCAA+CGG | 0.580360 | 7_2:-13995988 | Msa1050120:CDS |
| AGTATGTGTCTCAATTGAGA+AGG | 0.580680 | 7_2:-13993654 | Msa1050120:CDS |
| TTAACAGATGTTACTGCACA+AGG | 0.581029 | 7_2:+13993067 | None:intergenic |
| ATGACAGAGATTATTAAAAG+CGG | 0.593652 | 7_2:+13993044 | None:intergenic |
| AAAATAGAAATGGTTGCTTG+TGG | 0.596864 | 7_2:+13996155 | None:intergenic |
| CAAAGTATGCAAACATGGAG+TGG | 0.606862 | 7_2:+13994908 | None:intergenic |
| GATATTTGAACCGTTTGAGG+AGG | 0.609935 | 7_2:-13995949 | Msa1050120:CDS |
| GCCCTCAGAATTTGAGCATG+TGG | 0.613924 | 7_2:-13994199 | Msa1050120:CDS |
| TGATCAAAGACTTCTTCATG+AGG | 0.628033 | 7_2:-13993261 | Msa1050120:CDS |
| GTATGTGTCTCAATTGAGAA+GGG | 0.632300 | 7_2:-13993653 | Msa1050120:CDS |
| ATGAGAGTTGGTAAGAAATG+GGG | 0.641394 | 7_2:-13996020 | Msa1050120:CDS |
| AGAGTTGGTAAGAAATGGGG+TGG | 0.643701 | 7_2:-13996017 | Msa1050120:CDS |
| TGACGAGCCAAAGAAACTTG+AGG | 0.656795 | 7_2:+13995894 | None:intergenic |
| CTTGTTTAGAACGTTCGTGG+TGG | 0.666990 | 7_2:-13994252 | Msa1050120:intron |
| AAACATGGAGTGGTACACAT+AGG | 0.675664 | 7_2:+13994918 | None:intergenic |
| AGGGACAATGTGGCACTCAG+GGG | 0.690043 | 7_2:-13994883 | Msa1050120:CDS |
| ATACTTTGATAGGGACAATG+TGG | 0.721777 | 7_2:-13994893 | Msa1050120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTGTTTATAAAAACAAA+AGG | + | chr7_2:13994096-13994115 | None:intergenic | 10.0% |
| !!! | TATGAATTCATATAAAATTT+TGG | - | chr7_2:13995355-13995374 | Msa1050120:intron | 10.0% |
| !! | AATCATAATTATATCTTGAT+TGG | - | chr7_2:13993498-13993517 | Msa1050120:intron | 15.0% |
| !!! | TAATTCTTTTAGAAAATTAG+AGG | + | chr7_2:13993814-13993833 | None:intergenic | 15.0% |
| !!! | TAGTTTTTAAAAATCTCAAA+TGG | - | chr7_2:13993847-13993866 | Msa1050120:CDS | 15.0% |
| !!! | AGTTTTTAAAAATCTCAAAT+GGG | - | chr7_2:13993848-13993867 | Msa1050120:CDS | 15.0% |
| !! | AAATATTAGTAGTACTAATT+TGG | + | chr7_2:13993875-13993894 | None:intergenic | 15.0% |
| !!! | ATGTGATATTTGAAATTTAT+TGG | - | chr7_2:13993917-13993936 | Msa1050120:intron | 15.0% |
| !!! | TGTGATATTTGAAATTTATT+GGG | - | chr7_2:13993918-13993937 | Msa1050120:intron | 15.0% |
| !!! | AGTTGGTATTTTTAATTTTT+CGG | - | chr7_2:13993945-13993964 | Msa1050120:intron | 15.0% |
| !! | TTTATGATTCTTAAAAATGT+TGG | + | chr7_2:13995187-13995206 | None:intergenic | 15.0% |
| !!! | CTATTTTCTTAAATTACTAT+CGG | - | chr7_2:13995703-13995722 | Msa1050120:intron | 15.0% |
| !! | AAGTAAAACTTAGCTAAAAA+TGG | + | chr7_2:13993526-13993545 | None:intergenic | 20.0% |
| !! | TGTTGATACAAATTTAGATT+TGG | - | chr7_2:13993986-13994005 | Msa1050120:intron | 20.0% |
| !!! | TTTTTTATGTAAATTCTAGC+TGG | + | chr7_2:13994034-13994053 | None:intergenic | 20.0% |
| !! | ATGAAATTGAAAAACTGTAT+GGG | + | chr7_2:13994331-13994350 | None:intergenic | 20.0% |
| !! | AATGAAATTGAAAAACTGTA+TGG | + | chr7_2:13994332-13994351 | None:intergenic | 20.0% |
| !! | AAGCAAAAATTAGCATAATA+CGG | + | chr7_2:13995046-13995065 | None:intergenic | 20.0% |
| !! | GAAGATTTGTGAATAATAAT+AGG | - | chr7_2:13995242-13995261 | Msa1050120:intron | 20.0% |
| !!! | ACTACAATCATTTTTCATAT+TGG | - | chr7_2:13995532-13995551 | Msa1050120:intron | 20.0% |
| !! | TCTAAAGTTTCATCCTTTAA+TGG | - | chr7_2:13993024-13993043 | Msa1050120:three_prime_UTR | 25.0% |
| !! | CTATAACTTTTCTAACTATG+TGG | - | chr7_2:13993411-13993430 | Msa1050120:intron | 25.0% |
| ! | CTAAGATTTAAATGGTTGAT+TGG | - | chr7_2:13993439-13993458 | Msa1050120:intron | 25.0% |
| !!! | GCTAAGTTTTACTTAATTTG+AGG | - | chr7_2:13993532-13993551 | Msa1050120:intron | 25.0% |
| ! | TTTACTCATAAGAAAGATCT+AGG | - | chr7_2:13994054-13994073 | Msa1050120:intron | 25.0% |
| !! | GTCATATTTGAGTTTATGTT+TGG | + | chr7_2:13994288-13994307 | None:intergenic | 25.0% |
| ! | GTATGGGAAATAAAATAAGA+GGG | + | chr7_2:13994315-13994334 | None:intergenic | 25.0% |
| ! | TGTATGGGAAATAAAATAAG+AGG | + | chr7_2:13994316-13994335 | None:intergenic | 25.0% |
| !!! | TTGCTTTTATTGTTGAAATC+AGG | - | chr7_2:13994352-13994371 | Msa1050120:intron | 25.0% |
| ! | TGAAAAGCTTATGAAATATC+AGG | - | chr7_2:13994413-13994432 | Msa1050120:intron | 25.0% |
| !!! | TTAAGTTAGCTTTGTACTTT+AGG | - | chr7_2:13994436-13994455 | Msa1050120:intron | 25.0% |
| !!! | TAAGTTAGCTTTGTACTTTA+GGG | - | chr7_2:13994437-13994456 | Msa1050120:intron | 25.0% |
| ! | GATTTGTGAATAATAATAGG+TGG | - | chr7_2:13995245-13995264 | Msa1050120:intron | 25.0% |
| ! | TTCATTGAACATGAATTTCT+GGG | - | chr7_2:13995300-13995319 | Msa1050120:intron | 25.0% |
| !!! | TGTAAGGGATTCATATTTTT+TGG | - | chr7_2:13995412-13995431 | Msa1050120:intron | 25.0% |
| !! | TTTGGTAATATTCTTTCTTC+AGG | - | chr7_2:13995430-13995449 | Msa1050120:intron | 25.0% |
| !!! | ACATCTTTAATTTGAAGTGT+TGG | + | chr7_2:13995613-13995632 | None:intergenic | 25.0% |
| !!! | ATTTATATATTGCTGTTTGC+AGG | - | chr7_2:13995835-13995854 | Msa1050120:intron | 25.0% |
| ! | ATGACAGAGATTATTAAAAG+CGG | + | chr7_2:13996090-13996109 | None:intergenic | 25.0% |
| ! | TCTGTCATCAATAAAAAAAG+AGG | - | chr7_2:13996102-13996121 | Msa1050120:CDS | 25.0% |
| AAAATAGAAATGGTTGCTTG+TGG | + | chr7_2:13992979-13992998 | None:intergenic | 30.0% | |
| GAGTGATGAGAAAATAGAAA+TGG | + | chr7_2:13992989-13993008 | None:intergenic | 30.0% | |
| ! | TTCTATTTTCTCATCACTCA+TGG | - | chr7_2:13992990-13993009 | Msa1050120:three_prime_UTR | 30.0% |
| TGAGAGAGAAAATCCATTAA+AGG | + | chr7_2:13993040-13993059 | None:intergenic | 30.0% | |
| TTAACACCATTTCCTGAAAT+GGG | + | chr7_2:13993063-13993082 | None:intergenic | 30.0% | |
| ! | TCTTTTTGTGATATGAGAGT+TGG | - | chr7_2:13993099-13993118 | Msa1050120:three_prime_UTR | 30.0% |
| !! | ATATGAGAGTTGGTAAGAAA+TGG | - | chr7_2:13993109-13993128 | Msa1050120:three_prime_UTR | 30.0% |
| !! | TATGAGAGTTGGTAAGAAAT+GGG | - | chr7_2:13993110-13993129 | Msa1050120:three_prime_UTR | 30.0% |
| AAAGAAACTTGAGGAACAAT+AGG | + | chr7_2:13993231-13993250 | None:intergenic | 30.0% | |
| TATTGTTCCTCAAGTTTCTT+TGG | - | chr7_2:13993230-13993249 | Msa1050120:exon | 30.0% | |
| ! | AACTTTTCTAACTATGTGGT+TGG | - | chr7_2:13993415-13993434 | Msa1050120:intron | 30.0% |
| TGGTTGGACTAAGATTTAAA+TGG | - | chr7_2:13993431-13993450 | Msa1050120:intron | 30.0% | |
| ! | TTTTAATCCTCCAATTTCCA+AGG | + | chr7_2:13993582-13993601 | None:intergenic | 30.0% |
| ATGTACTTGCTCATCAAAAT+TGG | + | chr7_2:13993673-13993692 | None:intergenic | 30.0% | |
| GAAATTTATTGGGATCAAGT+TGG | - | chr7_2:13993928-13993947 | Msa1050120:intron | 30.0% | |
| ! | TTTTCTTCTTTTGCATGCAT+TGG | - | chr7_2:13994117-13994136 | Msa1050120:intron | 30.0% |
| TCACTTAGCATAGTAACAAT+GGG | + | chr7_2:13994152-13994171 | None:intergenic | 30.0% | |
| ATCACTTAGCATAGTAACAA+TGG | + | chr7_2:13994153-13994172 | None:intergenic | 30.0% | |
| CATGTTTGCATACTTTGATA+GGG | - | chr7_2:13994229-13994248 | Msa1050120:CDS | 30.0% | |
| GAGGTAAGTAAGTTCAAATA+AGG | + | chr7_2:13994476-13994495 | None:intergenic | 30.0% | |
| CTTCATAGTGTAACACTATT+TGG | - | chr7_2:13994677-13994696 | Msa1050120:intron | 30.0% | |
| AATTTGAGCATGTGGAAAAA+GGG | - | chr7_2:13994940-13994959 | Msa1050120:intron | 30.0% | |
| !! | TATTCCTTTTGTTTCAGCAA+TGG | - | chr7_2:13995072-13995091 | Msa1050120:intron | 30.0% |
| AATTCCATTGCTGAAACAAA+AGG | + | chr7_2:13995079-13995098 | None:intergenic | 30.0% | |
| !! | TTTTGTTTCAGCAATGGAAT+TGG | - | chr7_2:13995078-13995097 | Msa1050120:intron | 30.0% |
| TATTTGATCTGTAGTTGTCA+AGG | - | chr7_2:13995208-13995227 | Msa1050120:intron | 30.0% | |
| TTGTGAATAATAATAGGTGG+CGG | - | chr7_2:13995248-13995267 | Msa1050120:intron | 30.0% | |
| CTTCATTGAACATGAATTTC+TGG | - | chr7_2:13995299-13995318 | Msa1050120:intron | 30.0% | |
| ! | AAAGTTGCTTTAGCAATGTA+AGG | - | chr7_2:13995396-13995415 | Msa1050120:intron | 30.0% |
| ! | AAGTTGCTTTAGCAATGTAA+GGG | - | chr7_2:13995397-13995416 | Msa1050120:intron | 30.0% |
| ! | ATTGATAGGTGTTATGTGTA+TGG | + | chr7_2:13995571-13995590 | None:intergenic | 30.0% |
| CATAGATCGTACTAATTGAT+AGG | + | chr7_2:13995585-13995604 | None:intergenic | 30.0% | |
| TATCATGTATGTGTTGTATC+TGG | - | chr7_2:13995736-13995755 | Msa1050120:intron | 30.0% | |
| ACGTAGACAGATAATAGTAA+AGG | + | chr7_2:13995920-13995939 | None:intergenic | 30.0% | |
| CTTAACACCATTTCCTGAAA+TGG | + | chr7_2:13993064-13993083 | None:intergenic | 35.0% | |
| ! | TTCAGGAAATGGTGTTAAGA+AGG | - | chr7_2:13993065-13993084 | Msa1050120:three_prime_UTR | 35.0% |
| ! | TCAGGAAATGGTGTTAAGAA+GGG | - | chr7_2:13993066-13993085 | Msa1050120:three_prime_UTR | 35.0% |
| !! | ATGAGAGTTGGTAAGAAATG+GGG | - | chr7_2:13993111-13993130 | Msa1050120:three_prime_UTR | 35.0% |
| CTAGATTACCAATGATTCCT+TGG | - | chr7_2:13993562-13993581 | Msa1050120:intron | 35.0% | |
| ACCAATGATTCCTTGGAAAT+TGG | - | chr7_2:13993569-13993588 | Msa1050120:intron | 35.0% | |
| TCCAATTTCCAAGGAATCAT+TGG | + | chr7_2:13993573-13993592 | None:intergenic | 35.0% | |
| AATGATTCCTTGGAAATTGG+AGG | - | chr7_2:13993572-13993591 | Msa1050120:intron | 35.0% | |
| GAGGAAATCAAATTTGTGTG+TGG | + | chr7_2:13993645-13993664 | None:intergenic | 35.0% | |
| CTCATCAAAATTGGCATTAG+AGG | + | chr7_2:13993664-13993683 | None:intergenic | 35.0% | |
| !!! | AGTTGTGCTCTAGTTTTAAG+CGG | - | chr7_2:13993697-13993716 | Msa1050120:intron | 35.0% |
| !! | ATTGGTCCTATTGGATTAGT+CGG | - | chr7_2:13993743-13993762 | Msa1050120:intron | 35.0% |
| CAAAAACCGACTAATCCAAT+AGG | + | chr7_2:13993752-13993771 | None:intergenic | 35.0% | |
| !!! | CTATTGGATTAGTCGGTTTT+TGG | - | chr7_2:13993750-13993769 | Msa1050120:intron | 35.0% |
| ! | TTTTCATTTGTGTGACAGTG+TGG | - | chr7_2:13994178-13994197 | Msa1050120:CDS | 35.0% |
| CCTATCAAAGTATGCAAACA+TGG | + | chr7_2:13994231-13994250 | None:intergenic | 35.0% | |
| CCATGTTTGCATACTTTGAT+AGG | - | chr7_2:13994228-13994247 | Msa1050120:CDS | 35.0% | |
| ATACTTTGATAGGGACAATG+TGG | - | chr7_2:13994238-13994257 | Msa1050120:CDS | 35.0% | |
| TGTTGAAATCAGGTTCTTCA+AGG | - | chr7_2:13994362-13994381 | Msa1050120:intron | 35.0% | |
| GGTCTTACAAGTACTTATTG+AGG | + | chr7_2:13994495-13994514 | None:intergenic | 35.0% | |
| TATGAAGCACAAACACTCAT+CGG | + | chr7_2:13994664-13994683 | None:intergenic | 35.0% | |
| AATAAGCTGAAAACAACTCG+TGG | + | chr7_2:13994733-13994752 | None:intergenic | 35.0% | |
| CTTATTTCCATAAGCTCTTC+AGG | - | chr7_2:13994747-13994766 | Msa1050120:CDS | 35.0% | |
| ! | CTTTTAGTCAAGCAAATGTC+TGG | + | chr7_2:13994810-13994829 | None:intergenic | 35.0% |
| !! | TAACTTGTTTAGAACGTTCG+TGG | - | chr7_2:13994876-13994895 | Msa1050120:CDS | 35.0% |
| GAATTTGAGCATGTGGAAAA+AGG | - | chr7_2:13994939-13994958 | Msa1050120:intron | 35.0% | |
| ATTTGAGCATGTGGAAAAAG+GGG | - | chr7_2:13994941-13994960 | Msa1050120:intron | 35.0% | |
| ! | CTGTCTCACACATATAGTTT+TGG | - | chr7_2:13995001-13995020 | Msa1050120:intron | 35.0% |
| TGCTGAAACAAAAGGAATAG+AGG | + | chr7_2:13995071-13995090 | None:intergenic | 35.0% | |
| AAAAAGCTAAAGGGACAAAG+AGG | + | chr7_2:13995160-13995179 | None:intergenic | 35.0% | |
| GTTGGCAAGAAAAAGCTAAA+GGG | + | chr7_2:13995169-13995188 | None:intergenic | 35.0% | |
| TGTTGGCAAGAAAAAGCTAA+AGG | + | chr7_2:13995170-13995189 | None:intergenic | 35.0% | |
| ! | CAATGAAGCTTGTCATTTGA+GGG | + | chr7_2:13995287-13995306 | None:intergenic | 35.0% |
| ! | TCAATGAAGCTTGTCATTTG+AGG | + | chr7_2:13995288-13995307 | None:intergenic | 35.0% |
| AGTATGTGTCTCAATTGAGA+AGG | - | chr7_2:13995477-13995496 | Msa1050120:intron | 35.0% | |
| GTATGTGTCTCAATTGAGAA+GGG | - | chr7_2:13995478-13995497 | Msa1050120:intron | 35.0% | |
| ATATCAGACAGTTTCTGTGT+CGG | + | chr7_2:13995645-13995664 | None:intergenic | 35.0% | |
| TGATCAAAGACTTCTTCATG+AGG | - | chr7_2:13995870-13995889 | Msa1050120:CDS | 35.0% | |
| ! | TTGATCTTTTGTCAAGTGCT+TGG | - | chr7_2:13995940-13995959 | Msa1050120:CDS | 35.0% |
| TTAACAGATGTTACTGCACA+AGG | + | chr7_2:13996067-13996086 | None:intergenic | 35.0% | |
| ! | TTTTCTCTCTCACCCATTTC+AGG | - | chr7_2:13993048-13993067 | Msa1050120:three_prime_UTR | 40.0% |
| TCAAATATCACCCCAGTCAA+AGG | + | chr7_2:13993171-13993190 | None:intergenic | 40.0% | |
| GGTGATATTTGAACCGTTTG+AGG | - | chr7_2:13993179-13993198 | Msa1050120:three_prime_UTR | 40.0% | |
| GATATTTGAACCGTTTGAGG+AGG | - | chr7_2:13993182-13993201 | Msa1050120:three_prime_UTR | 40.0% | |
| TCCTTCTTAACCTCCTCAAA+CGG | + | chr7_2:13993195-13993214 | None:intergenic | 40.0% | |
| !!! | GTTGTGCTCTAGTTTTAAGC+GGG | - | chr7_2:13993698-13993717 | Msa1050120:intron | 40.0% |
| !!! | TTGTGCTCTAGTTTTAAGCG+GGG | - | chr7_2:13993699-13993718 | Msa1050120:intron | 40.0% |
| GGATAAATACACTCCACTCA+AGG | - | chr7_2:13994007-13994026 | Msa1050120:CDS | 40.0% | |
| AAACATGGAGTGGTACACAT+AGG | + | chr7_2:13994216-13994235 | None:intergenic | 40.0% | |
| CAAAGTATGCAAACATGGAG+TGG | + | chr7_2:13994226-13994245 | None:intergenic | 40.0% | |
| !! | TAGCTTTGTACTTTAGGGTC+TGG | - | chr7_2:13994442-13994461 | Msa1050120:intron | 40.0% |
| CTTGTAAGACCTATGAAGCA+CGG | - | chr7_2:13994504-13994523 | Msa1050120:intron | 40.0% | |
| TTCAGTGTGATCACATGTGT+CGG | - | chr7_2:13994585-13994604 | Msa1050120:intron | 40.0% | |
| AAACTGTCCTGAAGAGCTTA+TGG | + | chr7_2:13994757-13994776 | None:intergenic | 40.0% | |
| TCCACATGCTCAAATTCTGA+GGG | + | chr7_2:13994936-13994955 | None:intergenic | 40.0% | |
| TTCCACATGCTCAAATTCTG+AGG | + | chr7_2:13994937-13994956 | None:intergenic | 40.0% | |
| ! | TTGCATGGTGAGTTTGTTTC+TGG | - | chr7_2:13994969-13994988 | Msa1050120:intron | 40.0% |
| !! | AATGGAATTGGCTCTGTCTT+TGG | - | chr7_2:13995090-13995109 | Msa1050120:intron | 40.0% |
| TCATTTGAGGGTCATTGTTG+CGG | + | chr7_2:13995275-13995294 | None:intergenic | 40.0% | |
| TCAATTGAGAAGGGTTGGAA+AGG | - | chr7_2:13995487-13995506 | Msa1050120:intron | 40.0% | |
| CAATTGAGAAGGGTTGGAAA+GGG | - | chr7_2:13995488-13995507 | Msa1050120:intron | 40.0% | |
| TATGTGTATGGCGAAGTTTG+TGG | + | chr7_2:13995559-13995578 | None:intergenic | 40.0% | |
| GTATGATACTTCCTCCTATG+TGG | - | chr7_2:13995788-13995807 | Msa1050120:intron | 40.0% | |
| !! | TATTGCTGTTTGCAGGTGTT+TGG | - | chr7_2:13995842-13995861 | Msa1050120:intron | 40.0% |
| TTGCTAGTGTGACATGCATA+AGG | - | chr7_2:13996034-13996053 | Msa1050120:CDS | 40.0% | |
| CTCTCACCCATTTCAGGAAA+TGG | - | chr7_2:13993054-13993073 | Msa1050120:three_prime_UTR | 45.0% | |
| !! | AGAGTTGGTAAGAAATGGGG+TGG | - | chr7_2:13993114-13993133 | Msa1050120:three_prime_UTR | 45.0% |
| !! | TAAGAAATGGGGTGGTGGAA+AGG | - | chr7_2:13993122-13993141 | Msa1050120:three_prime_UTR | 45.0% |
| ACCGTTTGAGGAGGTTAAGA+AGG | - | chr7_2:13993191-13993210 | Msa1050120:three_prime_UTR | 45.0% | |
| TGACGAGCCAAAGAAACTTG+AGG | + | chr7_2:13993240-13993259 | None:intergenic | 45.0% | |
| ! | AATTCTAGCTGGACCTTGAG+TGG | + | chr7_2:13994023-13994042 | None:intergenic | 45.0% |
| AGACCTATGAAGCACGGATA+CGG | - | chr7_2:13994510-13994529 | Msa1050120:intron | 45.0% | |
| ! | CTTGTTTAGAACGTTCGTGG+TGG | - | chr7_2:13994879-13994898 | Msa1050120:CDS | 45.0% |
| ! | CTGAGGGCACATTCTTGATA+GGG | + | chr7_2:13994920-13994939 | None:intergenic | 45.0% |
| ! | TCTGAGGGCACATTCTTGAT+AGG | + | chr7_2:13994921-13994940 | None:intergenic | 45.0% |
| GAAAAAGGGGATGCATTGCA+TGG | - | chr7_2:13994954-13994973 | Msa1050120:intron | 45.0% | |
| ! | ACATGAATTTCTGGGCGAAC+AGG | - | chr7_2:13995308-13995327 | Msa1050120:intron | 45.0% |
| GTGTCTCAATTGAGAAGGGT+TGG | - | chr7_2:13995482-13995501 | Msa1050120:intron | 45.0% | |
| GTCTGATATAGACACATGCG+TGG | - | chr7_2:13995656-13995675 | Msa1050120:intron | 45.0% | |
| TGATACTTCCTCCTATGTGG+TGG | - | chr7_2:13995791-13995810 | Msa1050120:intron | 45.0% | |
| !! | CTTAAGAGTGTCCACCACAT+AGG | + | chr7_2:13995805-13995824 | None:intergenic | 45.0% |
| ! | GTTGGTAAGAAATGGGGTGG+TGG | - | chr7_2:13993117-13993136 | Msa1050120:three_prime_UTR | 50.0% |
| !! | ATGGGGTGGTGGAAAGGTTA+CGG | - | chr7_2:13993128-13993147 | Msa1050120:three_prime_UTR | 50.0% |
| GGTTACGGTTTGTGCAGCAA+CGG | - | chr7_2:13993143-13993162 | Msa1050120:three_prime_UTR | 50.0% | |
| CAGCAACGGTTCCTTTGACT+GGG | - | chr7_2:13993157-13993176 | Msa1050120:three_prime_UTR | 50.0% | |
| AGCAACGGTTCCTTTGACTG+GGG | - | chr7_2:13993158-13993177 | Msa1050120:three_prime_UTR | 50.0% | |
| ATAGGGACAATGTGGCACTC+AGG | - | chr7_2:13994246-13994265 | Msa1050120:CDS | 50.0% | |
| TAGGGACAATGTGGCACTCA+GGG | - | chr7_2:13994247-13994266 | Msa1050120:intron | 50.0% | |
| TGTCCGTATCCGTGCTTCAT+AGG | + | chr7_2:13994516-13994535 | None:intergenic | 50.0% | |
| GTCAGCGTTCATGTCGTGTA+CGG | + | chr7_2:13994539-13994558 | None:intergenic | 50.0% | |
| !! | CACATGTGTCGGTGTTGTGT+CGG | - | chr7_2:13994596-13994615 | Msa1050120:intron | 50.0% |
| GCACAAACACTCATCGGATC+AGG | + | chr7_2:13994658-13994677 | None:intergenic | 50.0% | |
| GCCCTCAGAATTTGAGCATG+TGG | - | chr7_2:13994932-13994951 | Msa1050120:CDS | 50.0% | |
| AGAAGGGTTGGAAAGGGTCA+TGG | - | chr7_2:13995494-13995513 | Msa1050120:intron | 50.0% | |
| !! | AAGAGTGTCCACCACATAGG+AGG | + | chr7_2:13995802-13995821 | None:intergenic | 50.0% |
| GCAGCAACGGTTCCTTTGAC+TGG | - | chr7_2:13993156-13993175 | Msa1050120:three_prime_UTR | 55.0% | |
| AATCACACCGCCCATTTGCG+GGG | + | chr7_2:13993726-13993745 | None:intergenic | 55.0% | |
| CAATCACACCGCCCATTTGC+GGG | + | chr7_2:13993727-13993746 | None:intergenic | 55.0% | |
| CCAATCACACCGCCCATTTG+CGG | + | chr7_2:13993728-13993747 | None:intergenic | 55.0% | |
| ! | GGCGGTGTGATTGGTCCTAT+TGG | - | chr7_2:13993734-13993753 | Msa1050120:intron | 55.0% |
| AGGGACAATGTGGCACTCAG+GGG | - | chr7_2:13994248-13994267 | Msa1050120:intron | 55.0% | |
| !! | TGTCGGTGTTGTGTCGGTGT+TGG | - | chr7_2:13994602-13994621 | Msa1050120:intron | 55.0% |
| TTAAGCGGGGACCCCGCAAA+TGG | - | chr7_2:13993712-13993731 | Msa1050120:intron | 60.0% | |
| TAAGCGGGGACCCCGCAAAT+GGG | - | chr7_2:13993713-13993732 | Msa1050120:intron | 60.0% | |
| CCGCAAATGGGCGGTGTGAT+TGG | - | chr7_2:13993725-13993744 | Msa1050120:intron | 60.0% | |
| TCATCGGATCAGGCGTGTCC+CGG | + | chr7_2:13994648-13994667 | None:intergenic | 60.0% | |
| CACCGATGCGTGTCCGACAC+CGG | - | chr7_2:13994626-13994645 | Msa1050120:intron | 65.0% | |
| ACCGATGCGTGTCCGACACC+GGG | - | chr7_2:13994627-13994646 | Msa1050120:intron | 65.0% | |
| ! | TCCCGGTGTCGGACACGCAT+CGG | + | chr7_2:13994631-13994650 | None:intergenic | 65.0% |
| GATCAGGCGTGTCCCGGTGT+CGG | + | chr7_2:13994642-13994661 | None:intergenic | 65.0% | |
| GCGGGGACCCCGCAAATGGG+CGG | - | chr7_2:13993716-13993735 | Msa1050120:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 13992974 | 13996179 | 13992974 | ID=Msa1050120;Name=Msa1050120 |
| chr7_2 | mRNA | 13992974 | 13996179 | 13992974 | ID=Msa1050120-mRNA-1;Parent=Msa1050120;Name=Msa1050120-mRNA-1;_AED=0.16;_eAED=0.16;_QI=35|1|1|1|1|1|8|273|256 |
| chr7_2 | exon | 13992974 | 13993296 | 13992974 | ID=Msa1050120-mRNA-1:exon:3466;Parent=Msa1050120-mRNA-1 |
| chr7_2 | exon | 13993638 | 13993701 | 13993638 | ID=Msa1050120-mRNA-1:exon:3465;Parent=Msa1050120-mRNA-1 |
| chr7_2 | exon | 13993824 | 13993889 | 13993824 | ID=Msa1050120-mRNA-1:exon:3464;Parent=Msa1050120-mRNA-1 |
| chr7_2 | exon | 13994003 | 13994064 | 13994003 | ID=Msa1050120-mRNA-1:exon:3463;Parent=Msa1050120-mRNA-1 |
| chr7_2 | exon | 13994178 | 13994265 | 13994178 | ID=Msa1050120-mRNA-1:exon:3462;Parent=Msa1050120-mRNA-1 |
| chr7_2 | exon | 13994719 | 13994779 | 13994719 | ID=Msa1050120-mRNA-1:exon:3461;Parent=Msa1050120-mRNA-1 |
| chr7_2 | exon | 13994874 | 13994957 | 13994874 | ID=Msa1050120-mRNA-1:exon:3460;Parent=Msa1050120-mRNA-1 |
| chr7_2 | exon | 13995849 | 13996179 | 13995849 | ID=Msa1050120-mRNA-1:exon:3459;Parent=Msa1050120-mRNA-1 |
| chr7_2 | five_prime_UTR | 13996145 | 13996179 | 13996145 | ID=Msa1050120-mRNA-1:five_prime_utr;Parent=Msa1050120-mRNA-1 |
| chr7_2 | CDS | 13995849 | 13996144 | 13995849 | ID=Msa1050120-mRNA-1:cds;Parent=Msa1050120-mRNA-1 |
| chr7_2 | CDS | 13994874 | 13994957 | 13994874 | ID=Msa1050120-mRNA-1:cds;Parent=Msa1050120-mRNA-1 |
| chr7_2 | CDS | 13994719 | 13994779 | 13994719 | ID=Msa1050120-mRNA-1:cds;Parent=Msa1050120-mRNA-1 |
| chr7_2 | CDS | 13994178 | 13994265 | 13994178 | ID=Msa1050120-mRNA-1:cds;Parent=Msa1050120-mRNA-1 |
| chr7_2 | CDS | 13994003 | 13994064 | 13994003 | ID=Msa1050120-mRNA-1:cds;Parent=Msa1050120-mRNA-1 |
| chr7_2 | CDS | 13993824 | 13993889 | 13993824 | ID=Msa1050120-mRNA-1:cds;Parent=Msa1050120-mRNA-1 |
| chr7_2 | CDS | 13993638 | 13993701 | 13993638 | ID=Msa1050120-mRNA-1:cds;Parent=Msa1050120-mRNA-1 |
| chr7_2 | CDS | 13993247 | 13993296 | 13993247 | ID=Msa1050120-mRNA-1:cds;Parent=Msa1050120-mRNA-1 |
| chr7_2 | three_prime_UTR | 13992974 | 13993246 | 13992974 | ID=Msa1050120-mRNA-1:three_prime_utr;Parent=Msa1050120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
