Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1152980 | XP_003623359.1 | 98.438 | 256 | 4 | 0 | 1 | 256 | 1 | 256 | 0.0 | 521 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1152980 | sp|P19976|FRI1_SOYBN | 80.400 | 250 | 48 | 1 | 1 | 250 | 1 | 249 | 2.15e-145 | 409 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1152980 | G7KT76 | 98.438 | 256 | 4 | 0 | 1 | 256 | 1 | 256 | 0.0 | 521 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0982340 | Msa1152980 | 0.819139 | 1.358654e-52 | -8.615850e-47 |
| Msa1025250 | Msa1152980 | 0.984041 | 2.021034e-159 | -8.615850e-47 |
| Msa1050120 | Msa1152980 | 0.974418 | 4.025440e-138 | -8.615850e-47 |
| Msa1109340 | Msa1152980 | 0.931930 | 1.818657e-94 | -8.615850e-47 |
| Msa0563230 | Msa1152980 | -0.801812 | 7.546456e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1152980 | MtrunA17_Chr7g0243241 | 98.438 | 256 | 4 | 0 | 1 | 256 | 1 | 256 | 0.0 | 521 |
| Msa1152980 | MtrunA17_Chr4g0005581 | 75.889 | 253 | 56 | 2 | 1 | 251 | 1 | 250 | 6.39e-129 | 365 |
| Msa1152980 | MtrunA17_Chr5g0437531 | 75.124 | 201 | 50 | 0 | 55 | 255 | 48 | 248 | 7.80e-107 | 309 |
| Msa1152980 | MtrunA17_Chr5g0431291 | 65.323 | 124 | 39 | 1 | 127 | 250 | 11 | 130 | 2.56e-52 | 166 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1152980 | AT5G01600.1 | 75.122 | 205 | 51 | 0 | 47 | 251 | 51 | 255 | 1.82e-114 | 329 |
| Msa1152980 | AT3G11050.1 | 69.302 | 215 | 62 | 1 | 43 | 253 | 38 | 252 | 1.43e-103 | 301 |
| Msa1152980 | AT2G40300.1 | 69.903 | 206 | 62 | 0 | 45 | 250 | 52 | 257 | 2.56e-103 | 301 |
| Msa1152980 | AT3G56090.1 | 72.680 | 194 | 53 | 0 | 57 | 250 | 62 | 255 | 2.71e-99 | 290 |
| Msa1152980 | AT3G61010.1 | 68.000 | 50 | 16 | 0 | 98 | 147 | 369 | 418 | 1.31e-15 | 76.3 |
| Msa1152980 | AT3G61010.3 | 68.000 | 50 | 16 | 0 | 98 | 147 | 369 | 418 | 1.31e-15 | 76.3 |
Find 63 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCATTGAACATGAATTTC+TGG | 0.146893 | 7_4:-39064734 | Msa1152980:CDS |
| TCTAAAGTTTCATCCTTTAA+TGG | 0.172298 | 7_4:-39067007 | Msa1152980:CDS |
| TATTGTTCCTCAAGTTTCTT+TGG | 0.188521 | 7_4:-39066801 | Msa1152980:CDS |
| CCATGTTTGCATACTTTGAT+AGG | 0.193427 | 7_4:-39065804 | Msa1152980:CDS |
| GAATTTGAGCATGTGGAAAA+AGG | 0.256169 | 7_4:-39065093 | Msa1152980:CDS |
| AATGGAATTGGCTCTGTCTT+TGG | 0.292583 | 7_4:-39064943 | Msa1152980:CDS |
| TCTGAGGGCACATTCTTGAT+AGG | 0.338948 | 7_4:+39065114 | None:intergenic |
| TGAGAGAGAAAATCCATTAA+AGG | 0.340654 | 7_4:+39066994 | None:intergenic |
| GCAGCAACGGTTCCATTGAC+TGG | 0.381954 | 7_4:-39066875 | Msa1152980:CDS |
| TTCATTGAACATGAATTTCT+GGG | 0.384380 | 7_4:-39064733 | Msa1152980:CDS |
| AAAGAAACTTGAGGAACAAT+AGG | 0.385312 | 7_4:+39066803 | None:intergenic |
| TGAAAAGCTTATGAAATATC+AGG | 0.391882 | 7_4:-39065619 | Msa1152980:intron |
| TTGATAAAATTATGACTAGA+AGG | 0.405334 | 7_4:+39063861 | None:intergenic |
| TATTGCTGTTTGCAGGTGTT+TGG | 0.405691 | 7_4:-39064191 | Msa1152980:intron |
| ATGGGGTGGTGGAAAGGTTA+CGG | 0.415415 | 7_4:-39066903 | Msa1152980:CDS |
| TCAAATATCACCCCAGTCAA+TGG | 0.423137 | 7_4:+39066863 | None:intergenic |
| CAATGAAGCTTGTCATTTGA+GGG | 0.428895 | 7_4:+39064749 | None:intergenic |
| ACATGAATTTCTGGGCGAAC+AGG | 0.446561 | 7_4:-39064725 | Msa1152980:intron |
| TGTTGAAATCAGGTTCTTCA+AGG | 0.448017 | 7_4:-39065670 | Msa1152980:intron |
| ATGTGAGAGTTGGTAAGAAA+TGG | 0.449029 | 7_4:-39066922 | Msa1152980:CDS |
| TTGCTAGTGTGACATGCATA+AGG | 0.453936 | 7_4:-39063999 | Msa1152980:three_prime_UTR |
| GGTGATATTTGAACCGTTTG+AGG | 0.456746 | 7_4:-39066852 | Msa1152980:CDS |
| TTTGGAAATGGTGTTAAGAA+GGG | 0.465155 | 7_4:-39066965 | Msa1152980:CDS |
| TGTGAGAGTTGGTAAGAAAT+GGG | 0.467347 | 7_4:-39066921 | Msa1152980:CDS |
| ACCGTTTGAGGAGGTTAAGA+AGG | 0.476612 | 7_4:-39066840 | Msa1152980:CDS |
| TCAATGAAGCTTGTCATTTG+AGG | 0.489748 | 7_4:+39064748 | None:intergenic |
| CATGTTTGCATACTTTGATA+GGG | 0.500774 | 7_4:-39065803 | Msa1152980:CDS |
| TCCTTCTTAACCTCCTCAAA+CGG | 0.501812 | 7_4:+39066839 | None:intergenic |
| TAAGAAATGGGGTGGTGGAA+AGG | 0.505923 | 7_4:-39066909 | Msa1152980:CDS |
| TAACTTGTTTAGAACGTTCG+TGG | 0.509370 | 7_4:-39065156 | Msa1152980:intron |
| CAGCAACGGTTCCATTGACT+GGG | 0.513898 | 7_4:-39066874 | Msa1152980:CDS |
| TTCCACATGCTCAAATTCTG+AGG | 0.516359 | 7_4:+39065098 | None:intergenic |
| CTGAGGGCACATTCTTGATA+GGG | 0.526116 | 7_4:+39065115 | None:intergenic |
| GTGTCTCAATTGAGAAGGGT+TGG | 0.530310 | 7_4:-39064551 | Msa1152980:CDS |
| CCTATCAAAGTATGCAAACA+TGG | 0.532849 | 7_4:+39065804 | None:intergenic |
| TCATTTGAGGGTCATTGTTG+CGG | 0.541374 | 7_4:+39064761 | None:intergenic |
| TAGGGACAATGTGGCACTCA+GGG | 0.545838 | 7_4:-39065785 | Msa1152980:CDS |
| GAGTGATGAGAAAATAGAAA+TGG | 0.550748 | 7_4:+39067045 | None:intergenic |
| TCAATTGAGAAGGGTTGGAA+AGG | 0.551958 | 7_4:-39064546 | Msa1152980:CDS |
| AGAAGGGTTGGAAAGGGTCA+TGG | 0.553158 | 7_4:-39064539 | Msa1152980:intron |
| ATAGGGACAATGTGGCACTC+AGG | 0.553669 | 7_4:-39065786 | Msa1152980:CDS |
| ACGTAGACAGATAATAGTAA+AGG | 0.559991 | 7_4:+39064116 | None:intergenic |
| TCCACATGCTCAAATTCTGA+GGG | 0.560756 | 7_4:+39065099 | None:intergenic |
| CAATTGAGAAGGGTTGGAAA+GGG | 0.565267 | 7_4:-39064545 | Msa1152980:CDS |
| GTTGGTAAGAAATGGGGTGG+TGG | 0.567662 | 7_4:-39066914 | Msa1152980:CDS |
| GGTTACGGTTTGTGCAGCAA+CGG | 0.580360 | 7_4:-39066888 | Msa1152980:CDS |
| AGTATGTGTCTCAATTGAGA+AGG | 0.580680 | 7_4:-39064556 | Msa1152980:CDS |
| TTAACAGATGTTACTGCACA+AGG | 0.581029 | 7_4:+39063969 | None:intergenic |
| ATGACAGAGATTATTAAAAG+CGG | 0.593652 | 7_4:+39063946 | None:intergenic |
| AAAATAGAAATGGTTGCTTG+TGG | 0.596864 | 7_4:+39067055 | None:intergenic |
| CAAAGTATGCAAACATGGAG+TGG | 0.606862 | 7_4:+39065809 | None:intergenic |
| GATATTTGAACCGTTTGAGG+AGG | 0.609935 | 7_4:-39066849 | Msa1152980:CDS |
| GCCCTCAGAATTTGAGCATG+TGG | 0.613924 | 7_4:-39065100 | Msa1152980:CDS |
| TGATCAAAGACTTCTTCATG+AGG | 0.628033 | 7_4:-39064163 | Msa1152980:CDS |
| GTATGTGTCTCAATTGAGAA+GGG | 0.632300 | 7_4:-39064555 | Msa1152980:CDS |
| AGAGTTGGTAAGAAATGGGG+TGG | 0.643701 | 7_4:-39066917 | Msa1152980:CDS |
| TGACGAGCCAAAGAAACTTG+AGG | 0.656795 | 7_4:+39066794 | None:intergenic |
| CTTGTTTAGAACGTTCGTGG+CGG | 0.665468 | 7_4:-39065153 | Msa1152980:intron |
| AAACATGGAGTGGTACACAT+AGG | 0.675664 | 7_4:+39065819 | None:intergenic |
| GTGAGAGTTGGTAAGAAATG+GGG | 0.684258 | 7_4:-39066920 | Msa1152980:CDS |
| AGGGACAATGTGGCACTCAG+GGG | 0.690043 | 7_4:-39065784 | Msa1152980:CDS |
| ATACTTTGATAGGGACAATG+TGG | 0.721777 | 7_4:-39065794 | Msa1152980:CDS |
| AGCAACGGTTCCATTGACTG+GGG | 0.753498 | 7_4:-39066873 | Msa1152980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTGTTTATAAAAACAAA+AGG | + | chr7_4:39064997-39065016 | None:intergenic | 10.0% |
| !!! | TATGAATTCATATAAAATTT+TGG | - | chr7_4:39066255-39066274 | Msa1152980:intron | 10.0% |
| !! | AATCATAATTATATCTTGAT+TGG | - | chr7_4:39064400-39064419 | Msa1152980:intron | 15.0% |
| !!! | TAATTCTTTTAGAAAATTAG+AGG | + | chr7_4:39064716-39064735 | None:intergenic | 15.0% |
| !!! | TAGTTTTTAAAAATCTCAAA+TGG | - | chr7_4:39064749-39064768 | Msa1152980:CDS | 15.0% |
| !!! | AGTTTTTAAAAATCTCAAAT+GGG | - | chr7_4:39064750-39064769 | Msa1152980:CDS | 15.0% |
| !! | AAATATTAGTAGTACTAATT+TGG | + | chr7_4:39064777-39064796 | None:intergenic | 15.0% |
| !!! | ATGTGATATTTGAAATTTAT+TGG | - | chr7_4:39064819-39064838 | Msa1152980:intron | 15.0% |
| !!! | TGTGATATTTGAAATTTATT+GGG | - | chr7_4:39064820-39064839 | Msa1152980:intron | 15.0% |
| !!! | CTATTTTCTTAAATTACTAT+CGG | - | chr7_4:39066603-39066622 | Msa1152980:intron | 15.0% |
| !! | AAGTAAAACTTAGCTAAAAA+TGG | + | chr7_4:39064428-39064447 | None:intergenic | 20.0% |
| !! | TGTTGATACAAATTTAGATT+TGG | - | chr7_4:39064888-39064907 | Msa1152980:intron | 20.0% |
| !!! | ATTTTTATGTAAATTCTAGC+TGG | + | chr7_4:39064936-39064955 | None:intergenic | 20.0% |
| !! | ATGAAATTGAAAAACTGTAT+GGG | + | chr7_4:39065232-39065251 | None:intergenic | 20.0% |
| !! | AATGAAATTGAAAAACTGTA+TGG | + | chr7_4:39065233-39065252 | None:intergenic | 20.0% |
| !! | AAGTAAAAATCAGCATAATA+CGG | + | chr7_4:39065948-39065967 | None:intergenic | 20.0% |
| !! | GAAGATTTGTGAATAATAAT+AGG | - | chr7_4:39066142-39066161 | Msa1152980:intron | 20.0% |
| !!! | ACTACAATCATTTTTCATAT+TGG | - | chr7_4:39066432-39066451 | Msa1152980:intron | 20.0% |
| !! | TCTAAAGTTTCATCCTTTAA+TGG | - | chr7_4:39063926-39063945 | Msa1152980:three_prime_UTR | 25.0% |
| ! | TTAACACCATTTCCAAAAAT+GGG | + | chr7_4:39063965-39063984 | None:intergenic | 25.0% |
| !! | CTATAACTTTTCTAACTATG+TGG | - | chr7_4:39064313-39064332 | Msa1152980:intron | 25.0% |
| ! | CTAAGATTTAAATGGTTGAT+TGG | - | chr7_4:39064341-39064360 | Msa1152980:intron | 25.0% |
| !!! | GCTAAGTTTTACTTAATTTG+AGG | - | chr7_4:39064434-39064453 | Msa1152980:intron | 25.0% |
| ! | TTTACTCATAAGAAAGATCT+AGG | - | chr7_4:39064955-39064974 | Msa1152980:intron | 25.0% |
| !! | GTCATATTTGAGTTTATGTT+TGG | + | chr7_4:39065189-39065208 | None:intergenic | 25.0% |
| ! | GTATGGGAAATAAAATAAGA+GGG | + | chr7_4:39065216-39065235 | None:intergenic | 25.0% |
| ! | TGTATGGGAAATAAAATAAG+AGG | + | chr7_4:39065217-39065236 | None:intergenic | 25.0% |
| !!! | TTGCTTTTATTGTTGAAATC+AGG | - | chr7_4:39065253-39065272 | Msa1152980:intron | 25.0% |
| ! | TGAAAAGCTTATGAAATATC+AGG | - | chr7_4:39065314-39065333 | Msa1152980:intron | 25.0% |
| ! | GATTTGTGAATAATAATAGG+TGG | - | chr7_4:39066145-39066164 | Msa1152980:intron | 25.0% |
| ! | TTCATTGAACATGAATTTCT+GGG | - | chr7_4:39066200-39066219 | Msa1152980:intron | 25.0% |
| !! | AAATTTGCTTTAGCAATGTA+AGG | - | chr7_4:39066296-39066315 | Msa1152980:intron | 25.0% |
| !! | AATTTGCTTTAGCAATGTAA+GGG | - | chr7_4:39066297-39066316 | Msa1152980:intron | 25.0% |
| !!! | TGTAAGGGATTCATATTTTT+TGG | - | chr7_4:39066312-39066331 | Msa1152980:intron | 25.0% |
| !! | TTTGGTAATATTCTTTCTTC+AGG | - | chr7_4:39066330-39066349 | Msa1152980:intron | 25.0% |
| !!! | ACATCTTTAATTTGAAGTGT+TGG | + | chr7_4:39066513-39066532 | None:intergenic | 25.0% |
| !!! | ATTTATATATTGCTGTTTGC+AGG | - | chr7_4:39066735-39066754 | Msa1152980:intron | 25.0% |
| ! | ATGACAGAGATTATTAAAAG+CGG | + | chr7_4:39066990-39067009 | None:intergenic | 25.0% |
| ! | TCTGTCATCAATAAAAAAAG+AGG | - | chr7_4:39067002-39067021 | Msa1152980:CDS | 25.0% |
| AAAATAGAAATGGTTGCTTG+TGG | + | chr7_4:39063881-39063900 | None:intergenic | 30.0% | |
| GAGTGATGAGAAAATAGAAA+TGG | + | chr7_4:39063891-39063910 | None:intergenic | 30.0% | |
| ! | TTCTATTTTCTCATCACTCA+TGG | - | chr7_4:39063892-39063911 | Msa1152980:three_prime_UTR | 30.0% |
| TGAGAGAGAAAATCCATTAA+AGG | + | chr7_4:39063942-39063961 | None:intergenic | 30.0% | |
| CTTAACACCATTTCCAAAAA+TGG | + | chr7_4:39063966-39063985 | None:intergenic | 30.0% | |
| !! | TTTTGGAAATGGTGTTAAGA+AGG | - | chr7_4:39063967-39063986 | Msa1152980:three_prime_UTR | 30.0% |
| ! | TTTGGAAATGGTGTTAAGAA+GGG | - | chr7_4:39063968-39063987 | Msa1152980:three_prime_UTR | 30.0% |
| AAAGAAACTTGAGGAACAAT+AGG | + | chr7_4:39064133-39064152 | None:intergenic | 30.0% | |
| TATTGTTCCTCAAGTTTCTT+TGG | - | chr7_4:39064132-39064151 | Msa1152980:exon | 30.0% | |
| ! | AACTTTTCTAACTATGTGGT+TGG | - | chr7_4:39064317-39064336 | Msa1152980:intron | 30.0% |
| TGGTTGGACTAAGATTTAAA+TGG | - | chr7_4:39064333-39064352 | Msa1152980:intron | 30.0% | |
| ! | TTTTAATCCTCCAATTTCCA+AGG | + | chr7_4:39064484-39064503 | None:intergenic | 30.0% |
| ATGTACTTGCTCATCAAAAT+TGG | + | chr7_4:39064575-39064594 | None:intergenic | 30.0% | |
| GAAATTTATTGGGATCAAGT+TGG | - | chr7_4:39064830-39064849 | Msa1152980:intron | 30.0% | |
| ! | TTTTCTTCTTTTGCATGCAT+TGG | - | chr7_4:39065018-39065037 | Msa1152980:intron | 30.0% |
| TCACTTAGCATAGTAACAAT+GGG | + | chr7_4:39065053-39065072 | None:intergenic | 30.0% | |
| ATCACTTAGCATAGTAACAA+TGG | + | chr7_4:39065054-39065073 | None:intergenic | 30.0% | |
| CATGTTTGCATACTTTGATA+GGG | - | chr7_4:39065130-39065149 | Msa1152980:CDS | 30.0% | |
| !! | TTAAGTTAGCTCTGTACTTT+AGG | - | chr7_4:39065337-39065356 | Msa1152980:intron | 30.0% |
| !! | TAAGTTAGCTCTGTACTTTA+GGG | - | chr7_4:39065338-39065357 | Msa1152980:intron | 30.0% |
| GAGGTAAGTAAGTTCAAATA+AGG | + | chr7_4:39065377-39065396 | None:intergenic | 30.0% | |
| AATTTGAGCATGTGGAAAAA+GGG | - | chr7_4:39065841-39065860 | Msa1152980:intron | 30.0% | |
| ! | TGTCTCACACATTATAGTTT+TGG | - | chr7_4:39065903-39065922 | Msa1152980:intron | 30.0% |
| !! | TATTCCTTTTGTTTCAGCAA+TGG | - | chr7_4:39065972-39065991 | Msa1152980:intron | 30.0% |
| AATTCCATTGCTGAAACAAA+AGG | + | chr7_4:39065979-39065998 | None:intergenic | 30.0% | |
| !! | TTTTGTTTCAGCAATGGAAT+TGG | - | chr7_4:39065978-39065997 | Msa1152980:intron | 30.0% |
| GTTGTCAAGAAAAAGCTAAA+GGG | + | chr7_4:39066069-39066088 | None:intergenic | 30.0% | |
| TGTTGTCAAGAAAAAGCTAA+AGG | + | chr7_4:39066070-39066089 | None:intergenic | 30.0% | |
| TATTTGATCTGTAGTTGTCA+AGG | - | chr7_4:39066108-39066127 | Msa1152980:intron | 30.0% | |
| TTGTGAATAATAATAGGTGG+CGG | - | chr7_4:39066148-39066167 | Msa1152980:intron | 30.0% | |
| CTTCATTGAACATGAATTTC+TGG | - | chr7_4:39066199-39066218 | Msa1152980:intron | 30.0% | |
| ! | ATTGATAGGTGTTATGTGTA+TGG | + | chr7_4:39066471-39066490 | None:intergenic | 30.0% |
| CATAGATCGTACTAATTGAT+AGG | + | chr7_4:39066485-39066504 | None:intergenic | 30.0% | |
| ATATCAGACAGTTTCTGTAT+CGG | + | chr7_4:39066545-39066564 | None:intergenic | 30.0% | |
| TATCATGTATGTGTTGTATC+TGG | - | chr7_4:39066636-39066655 | Msa1152980:intron | 30.0% | |
| ACGTAGACAGATAATAGTAA+AGG | + | chr7_4:39066820-39066839 | None:intergenic | 30.0% | |
| ! | TTTTCTCTCTCACCCATTTT+TGG | - | chr7_4:39063950-39063969 | Msa1152980:three_prime_UTR | 35.0% |
| ! | TCTTTTTGTGATGTGAGAGT+TGG | - | chr7_4:39064001-39064020 | Msa1152980:three_prime_UTR | 35.0% |
| !! | ATGTGAGAGTTGGTAAGAAA+TGG | - | chr7_4:39064011-39064030 | Msa1152980:three_prime_UTR | 35.0% |
| !! | TGTGAGAGTTGGTAAGAAAT+GGG | - | chr7_4:39064012-39064031 | Msa1152980:three_prime_UTR | 35.0% |
| CTAGATTACCAATGATTCCT+TGG | - | chr7_4:39064464-39064483 | Msa1152980:intron | 35.0% | |
| ACCAATGATTCCTTGGAAAT+TGG | - | chr7_4:39064471-39064490 | Msa1152980:intron | 35.0% | |
| TCCAATTTCCAAGGAATCAT+TGG | + | chr7_4:39064475-39064494 | None:intergenic | 35.0% | |
| AATGATTCCTTGGAAATTGG+AGG | - | chr7_4:39064474-39064493 | Msa1152980:intron | 35.0% | |
| GAGGAAATCAAATTTGTGTG+TGG | + | chr7_4:39064547-39064566 | None:intergenic | 35.0% | |
| CTCATCAAAATTGGCATTAG+AGG | + | chr7_4:39064566-39064585 | None:intergenic | 35.0% | |
| !!! | AGTTGTGCTCTAGTTTTAAG+CGG | - | chr7_4:39064599-39064618 | Msa1152980:intron | 35.0% |
| !! | ATTGGTCCTATTGGATTAGT+CGG | - | chr7_4:39064645-39064664 | Msa1152980:intron | 35.0% |
| CAAAAACCGACTAATCCAAT+AGG | + | chr7_4:39064654-39064673 | None:intergenic | 35.0% | |
| !!! | CTATTGGATTAGTCGGTTTT+TGG | - | chr7_4:39064652-39064671 | Msa1152980:intron | 35.0% |
| ! | TTTTCATTTGTGTGACAGTG+TGG | - | chr7_4:39065079-39065098 | Msa1152980:CDS | 35.0% |
| CCTATCAAAGTATGCAAACA+TGG | + | chr7_4:39065132-39065151 | None:intergenic | 35.0% | |
| CCATGTTTGCATACTTTGAT+AGG | - | chr7_4:39065129-39065148 | Msa1152980:CDS | 35.0% | |
| ATACTTTGATAGGGACAATG+TGG | - | chr7_4:39065139-39065158 | Msa1152980:CDS | 35.0% | |
| TGTTGAAATCAGGTTCTTCA+AGG | - | chr7_4:39065263-39065282 | Msa1152980:intron | 35.0% | |
| GGTCTTACAAGTACTTATTG+AGG | + | chr7_4:39065396-39065415 | None:intergenic | 35.0% | |
| TTCAGTGTAATCACATGTGT+CGG | - | chr7_4:39065486-39065505 | Msa1152980:intron | 35.0% | |
| CTTCATAGTGTAACACTGTT+TGG | - | chr7_4:39065578-39065597 | Msa1152980:intron | 35.0% | |
| AATAAGCTGAAAACAACTCG+TGG | + | chr7_4:39065634-39065653 | None:intergenic | 35.0% | |
| CTTATTTCCATAAGCTCTTC+AGG | - | chr7_4:39065648-39065667 | Msa1152980:CDS | 35.0% | |
| ! | CTTTTAGTCAAGCAAATGTC+TGG | + | chr7_4:39065711-39065730 | None:intergenic | 35.0% |
| !! | TAACTTGTTTAGAACGTTCG+TGG | - | chr7_4:39065777-39065796 | Msa1152980:CDS | 35.0% |
| GAATTTGAGCATGTGGAAAA+AGG | - | chr7_4:39065840-39065859 | Msa1152980:intron | 35.0% | |
| ATTTGAGCATGTGGAAAAAG+GGG | - | chr7_4:39065842-39065861 | Msa1152980:intron | 35.0% | |
| TGCTGAAACAAAAGGAATAG+AGG | + | chr7_4:39065971-39065990 | None:intergenic | 35.0% | |
| AAAAAGCTAAAGGGACAAAG+AGG | + | chr7_4:39066060-39066079 | None:intergenic | 35.0% | |
| ! | CAATGAAGCTTGTCATTTGA+GGG | + | chr7_4:39066187-39066206 | None:intergenic | 35.0% |
| ! | TCAATGAAGCTTGTCATTTG+AGG | + | chr7_4:39066188-39066207 | None:intergenic | 35.0% |
| AGTATGTGTCTCAATTGAGA+AGG | - | chr7_4:39066377-39066396 | Msa1152980:intron | 35.0% | |
| GTATGTGTCTCAATTGAGAA+GGG | - | chr7_4:39066378-39066397 | Msa1152980:intron | 35.0% | |
| TGATCAAAGACTTCTTCATG+AGG | - | chr7_4:39066770-39066789 | Msa1152980:CDS | 35.0% | |
| ! | TTGATCTTTTGTCAAGTGCT+TGG | - | chr7_4:39066840-39066859 | Msa1152980:CDS | 35.0% |
| TTAACAGATGTTACTGCACA+AGG | + | chr7_4:39066967-39066986 | None:intergenic | 35.0% | |
| !! | CTCTCACCCATTTTTGGAAA+TGG | - | chr7_4:39063956-39063975 | Msa1152980:three_prime_UTR | 40.0% |
| !! | GTGAGAGTTGGTAAGAAATG+GGG | - | chr7_4:39064013-39064032 | Msa1152980:three_prime_UTR | 40.0% |
| TCAAATATCACCCCAGTCAA+TGG | + | chr7_4:39064073-39064092 | None:intergenic | 40.0% | |
| GGTGATATTTGAACCGTTTG+AGG | - | chr7_4:39064081-39064100 | Msa1152980:three_prime_UTR | 40.0% | |
| GATATTTGAACCGTTTGAGG+AGG | - | chr7_4:39064084-39064103 | Msa1152980:three_prime_UTR | 40.0% | |
| TCCTTCTTAACCTCCTCAAA+CGG | + | chr7_4:39064097-39064116 | None:intergenic | 40.0% | |
| !!! | GTTGTGCTCTAGTTTTAAGC+GGG | - | chr7_4:39064600-39064619 | Msa1152980:intron | 40.0% |
| !!! | TTGTGCTCTAGTTTTAAGCG+GGG | - | chr7_4:39064601-39064620 | Msa1152980:intron | 40.0% |
| GGATAAATACACTCCACTCA+AGG | - | chr7_4:39064909-39064928 | Msa1152980:CDS | 40.0% | |
| AAACATGGAGTGGTACACAT+AGG | + | chr7_4:39065117-39065136 | None:intergenic | 40.0% | |
| CAAAGTATGCAAACATGGAG+TGG | + | chr7_4:39065127-39065146 | None:intergenic | 40.0% | |
| CTTGTAAGACCTATGAAGCA+CGG | - | chr7_4:39065405-39065424 | Msa1152980:intron | 40.0% | |
| AAACTGTCCTGAAGAGCTTA+TGG | + | chr7_4:39065658-39065677 | None:intergenic | 40.0% | |
| TCCACATGCTCAAATTCTGA+GGG | + | chr7_4:39065837-39065856 | None:intergenic | 40.0% | |
| TTCCACATGCTCAAATTCTG+AGG | + | chr7_4:39065838-39065857 | None:intergenic | 40.0% | |
| ! | TTGCATGGTGAGTTTGTTTC+TGG | - | chr7_4:39065870-39065889 | Msa1152980:intron | 40.0% |
| !! | AATGGAATTGGCTCTGTCTT+TGG | - | chr7_4:39065990-39066009 | Msa1152980:intron | 40.0% |
| TCATTTGAGGGTCATTGTTG+CGG | + | chr7_4:39066175-39066194 | None:intergenic | 40.0% | |
| TCAATTGAGAAGGGTTGGAA+AGG | - | chr7_4:39066387-39066406 | Msa1152980:intron | 40.0% | |
| CAATTGAGAAGGGTTGGAAA+GGG | - | chr7_4:39066388-39066407 | Msa1152980:intron | 40.0% | |
| TATGTGTATGGCGAAGTTTG+TGG | + | chr7_4:39066459-39066478 | None:intergenic | 40.0% | |
| GTATGATACTTCCTCCTATG+TGG | - | chr7_4:39066688-39066707 | Msa1152980:intron | 40.0% | |
| !! | TATTGCTGTTTGCAGGTGTT+TGG | - | chr7_4:39066742-39066761 | Msa1152980:intron | 40.0% |
| TTGCTAGTGTGACATGCATA+AGG | - | chr7_4:39066934-39066953 | Msa1152980:CDS | 40.0% | |
| !! | AGAGTTGGTAAGAAATGGGG+TGG | - | chr7_4:39064016-39064035 | Msa1152980:three_prime_UTR | 45.0% |
| !! | TAAGAAATGGGGTGGTGGAA+AGG | - | chr7_4:39064024-39064043 | Msa1152980:three_prime_UTR | 45.0% |
| ACCGTTTGAGGAGGTTAAGA+AGG | - | chr7_4:39064093-39064112 | Msa1152980:three_prime_UTR | 45.0% | |
| TGACGAGCCAAAGAAACTTG+AGG | + | chr7_4:39064142-39064161 | None:intergenic | 45.0% | |
| ! | AATTCTAGCTGGACCTTGAG+TGG | + | chr7_4:39064925-39064944 | None:intergenic | 45.0% |
| !! | TAGCTCTGTACTTTAGGGTC+TGG | - | chr7_4:39065343-39065362 | Msa1152980:intron | 45.0% |
| AGACCTATGAAGCACGGATA+CGG | - | chr7_4:39065411-39065430 | Msa1152980:intron | 45.0% | |
| GCACAAACACTCATCAGATC+AGG | + | chr7_4:39065559-39065578 | None:intergenic | 45.0% | |
| ! | CTTGTTTAGAACGTTCGTGG+CGG | - | chr7_4:39065780-39065799 | Msa1152980:CDS | 45.0% |
| ! | CTGAGGGCACATTCTTGATA+GGG | + | chr7_4:39065821-39065840 | None:intergenic | 45.0% |
| ! | TCTGAGGGCACATTCTTGAT+AGG | + | chr7_4:39065822-39065841 | None:intergenic | 45.0% |
| GAAAAAGGGGATGCATTGCA+TGG | - | chr7_4:39065855-39065874 | Msa1152980:intron | 45.0% | |
| ! | ACATGAATTTCTGGGCGAAC+AGG | - | chr7_4:39066208-39066227 | Msa1152980:intron | 45.0% |
| GTGTCTCAATTGAGAAGGGT+TGG | - | chr7_4:39066382-39066401 | Msa1152980:intron | 45.0% | |
| GTCTGATATAGACACATGCG+TGG | - | chr7_4:39066556-39066575 | Msa1152980:intron | 45.0% | |
| TGATACTTCCTCCTATGTGG+TGG | - | chr7_4:39066691-39066710 | Msa1152980:intron | 45.0% | |
| !! | CTTAAGAGTGTCCACCACAT+AGG | + | chr7_4:39066705-39066724 | None:intergenic | 45.0% |
| ! | GTTGGTAAGAAATGGGGTGG+TGG | - | chr7_4:39064019-39064038 | Msa1152980:three_prime_UTR | 50.0% |
| !! | ATGGGGTGGTGGAAAGGTTA+CGG | - | chr7_4:39064030-39064049 | Msa1152980:three_prime_UTR | 50.0% |
| GGTTACGGTTTGTGCAGCAA+CGG | - | chr7_4:39064045-39064064 | Msa1152980:three_prime_UTR | 50.0% | |
| ! | CAGCAACGGTTCCATTGACT+GGG | - | chr7_4:39064059-39064078 | Msa1152980:three_prime_UTR | 50.0% |
| ! | AGCAACGGTTCCATTGACTG+GGG | - | chr7_4:39064060-39064079 | Msa1152980:three_prime_UTR | 50.0% |
| ATAGGGACAATGTGGCACTC+AGG | - | chr7_4:39065147-39065166 | Msa1152980:CDS | 50.0% | |
| TAGGGACAATGTGGCACTCA+GGG | - | chr7_4:39065148-39065167 | Msa1152980:intron | 50.0% | |
| TGTCCGTATCCGTGCTTCAT+AGG | + | chr7_4:39065417-39065436 | None:intergenic | 50.0% | |
| GTCAGCGTTCATGTCGTGTA+CGG | + | chr7_4:39065440-39065459 | None:intergenic | 50.0% | |
| GCCCTCAGAATTTGAGCATG+TGG | - | chr7_4:39065833-39065852 | Msa1152980:CDS | 50.0% | |
| AGAAGGGTTGGAAAGGGTCA+TGG | - | chr7_4:39066394-39066413 | Msa1152980:intron | 50.0% | |
| !! | AAGAGTGTCCACCACATAGG+AGG | + | chr7_4:39066702-39066721 | None:intergenic | 50.0% |
| GCAGCAACGGTTCCATTGAC+TGG | - | chr7_4:39064058-39064077 | Msa1152980:three_prime_UTR | 55.0% | |
| AATCACACCGCCCATTTGCG+GGG | + | chr7_4:39064628-39064647 | None:intergenic | 55.0% | |
| CAATCACACCGCCCATTTGC+GGG | + | chr7_4:39064629-39064648 | None:intergenic | 55.0% | |
| CCAATCACACCGCCCATTTG+CGG | + | chr7_4:39064630-39064649 | None:intergenic | 55.0% | |
| ! | GGCGGTGTGATTGGTCCTAT+TGG | - | chr7_4:39064636-39064655 | Msa1152980:intron | 55.0% |
| AGGGACAATGTGGCACTCAG+GGG | - | chr7_4:39065149-39065168 | Msa1152980:intron | 55.0% | |
| !! | CACATGTGTCGGTGTCGTGT+CGG | - | chr7_4:39065497-39065516 | Msa1152980:intron | 55.0% |
| TCATCAGATCAGGCGTGTCC+CGG | + | chr7_4:39065549-39065568 | None:intergenic | 55.0% | |
| TTAAGCGGGGACCCCGCAAA+TGG | - | chr7_4:39064614-39064633 | Msa1152980:intron | 60.0% | |
| TAAGCGGGGACCCCGCAAAT+GGG | - | chr7_4:39064615-39064634 | Msa1152980:intron | 60.0% | |
| CCGCAAATGGGCGGTGTGAT+TGG | - | chr7_4:39064627-39064646 | Msa1152980:intron | 60.0% | |
| !! | TGTCGGTGTCGTGTCGGTGT+TGG | - | chr7_4:39065503-39065522 | Msa1152980:intron | 60.0% |
| CATCGACGCGTGTCCGACAC+CGG | - | chr7_4:39065527-39065546 | Msa1152980:intron | 65.0% | |
| ATCGACGCGTGTCCGACACC+GGG | - | chr7_4:39065528-39065547 | Msa1152980:intron | 65.0% | |
| GATCAGGCGTGTCCCGGTGT+CGG | + | chr7_4:39065543-39065562 | None:intergenic | 65.0% | |
| GCGGGGACCCCGCAAATGGG+CGG | - | chr7_4:39064618-39064637 | Msa1152980:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 39063876 | 39067079 | 39063876 | ID=Msa1152980;Name=Msa1152980 |
| chr7_4 | mRNA | 39063876 | 39067079 | 39063876 | ID=Msa1152980-mRNA-1;Parent=Msa1152980;Name=Msa1152980-mRNA-1;_AED=0.16;_eAED=0.16;_QI=35|1|1|1|1|1|8|273|256 |
| chr7_4 | exon | 39063876 | 39064198 | 39063876 | ID=Msa1152980-mRNA-1:exon:9473;Parent=Msa1152980-mRNA-1 |
| chr7_4 | exon | 39064540 | 39064603 | 39064540 | ID=Msa1152980-mRNA-1:exon:9472;Parent=Msa1152980-mRNA-1 |
| chr7_4 | exon | 39064726 | 39064791 | 39064726 | ID=Msa1152980-mRNA-1:exon:9471;Parent=Msa1152980-mRNA-1 |
| chr7_4 | exon | 39064905 | 39064966 | 39064905 | ID=Msa1152980-mRNA-1:exon:9470;Parent=Msa1152980-mRNA-1 |
| chr7_4 | exon | 39065079 | 39065166 | 39065079 | ID=Msa1152980-mRNA-1:exon:9469;Parent=Msa1152980-mRNA-1 |
| chr7_4 | exon | 39065620 | 39065680 | 39065620 | ID=Msa1152980-mRNA-1:exon:9468;Parent=Msa1152980-mRNA-1 |
| chr7_4 | exon | 39065775 | 39065858 | 39065775 | ID=Msa1152980-mRNA-1:exon:9467;Parent=Msa1152980-mRNA-1 |
| chr7_4 | exon | 39066749 | 39067079 | 39066749 | ID=Msa1152980-mRNA-1:exon:9466;Parent=Msa1152980-mRNA-1 |
| chr7_4 | five_prime_UTR | 39067045 | 39067079 | 39067045 | ID=Msa1152980-mRNA-1:five_prime_utr;Parent=Msa1152980-mRNA-1 |
| chr7_4 | CDS | 39066749 | 39067044 | 39066749 | ID=Msa1152980-mRNA-1:cds;Parent=Msa1152980-mRNA-1 |
| chr7_4 | CDS | 39065775 | 39065858 | 39065775 | ID=Msa1152980-mRNA-1:cds;Parent=Msa1152980-mRNA-1 |
| chr7_4 | CDS | 39065620 | 39065680 | 39065620 | ID=Msa1152980-mRNA-1:cds;Parent=Msa1152980-mRNA-1 |
| chr7_4 | CDS | 39065079 | 39065166 | 39065079 | ID=Msa1152980-mRNA-1:cds;Parent=Msa1152980-mRNA-1 |
| chr7_4 | CDS | 39064905 | 39064966 | 39064905 | ID=Msa1152980-mRNA-1:cds;Parent=Msa1152980-mRNA-1 |
| chr7_4 | CDS | 39064726 | 39064791 | 39064726 | ID=Msa1152980-mRNA-1:cds;Parent=Msa1152980-mRNA-1 |
| chr7_4 | CDS | 39064540 | 39064603 | 39064540 | ID=Msa1152980-mRNA-1:cds;Parent=Msa1152980-mRNA-1 |
| chr7_4 | CDS | 39064149 | 39064198 | 39064149 | ID=Msa1152980-mRNA-1:cds;Parent=Msa1152980-mRNA-1 |
| chr7_4 | three_prime_UTR | 39063876 | 39064148 | 39063876 | ID=Msa1152980-mRNA-1:three_prime_utr;Parent=Msa1152980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
