Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1109340 | XP_003623359.1 | 96.923 | 260 | 4 | 2 | 1 | 260 | 1 | 256 | 0.0 | 509 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1109340 | sp|P19976|FRI1_SOYBN | 78.599 | 257 | 44 | 2 | 1 | 254 | 1 | 249 | 2.16e-144 | 407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1109340 | G7KT76 | 96.923 | 260 | 4 | 2 | 1 | 260 | 1 | 256 | 0.0 | 509 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1025250 | Msa1109340 | 0.943540 | 1.000330e-102 | -8.615850e-47 |
| Msa1050120 | Msa1109340 | 0.947295 | 8.875004e-106 | -8.615850e-47 |
| Msa1109340 | Msa1152980 | 0.931930 | 1.818657e-94 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1109340 | MtrunA17_Chr7g0243241 | 96.923 | 260 | 4 | 2 | 1 | 260 | 1 | 256 | 0.0 | 509 |
| Msa1109340 | MtrunA17_Chr4g0005581 | 74.902 | 255 | 59 | 2 | 1 | 255 | 1 | 250 | 2.71e-127 | 361 |
| Msa1109340 | MtrunA17_Chr5g0437531 | 65.833 | 240 | 75 | 2 | 27 | 259 | 9 | 248 | 4.00e-107 | 310 |
| Msa1109340 | MtrunA17_Chr5g0431291 | 65.323 | 124 | 39 | 1 | 131 | 254 | 11 | 130 | 2.19e-52 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1109340 | AT5G01600.1 | 75.122 | 205 | 51 | 0 | 51 | 255 | 51 | 255 | 2.17e-114 | 329 |
| Msa1109340 | AT2G40300.1 | 64.286 | 238 | 78 | 2 | 23 | 254 | 21 | 257 | 1.21e-104 | 304 |
| Msa1109340 | AT3G11050.1 | 71.782 | 202 | 57 | 0 | 56 | 257 | 51 | 252 | 1.24e-102 | 299 |
| Msa1109340 | AT3G56090.1 | 73.196 | 194 | 52 | 0 | 61 | 254 | 62 | 255 | 5.25e-100 | 293 |
| Msa1109340 | AT3G61010.1 | 68.000 | 50 | 16 | 0 | 102 | 151 | 369 | 418 | 1.77e-15 | 75.9 |
| Msa1109340 | AT3G61010.3 | 68.000 | 50 | 16 | 0 | 102 | 151 | 369 | 418 | 1.77e-15 | 75.9 |
Find 63 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCATTGAACATGAATTTC+TGG | 0.146893 | 7_3:-52833839 | Msa1109340:CDS |
| TCTAAAGTTTCATCCTTTAA+TGG | 0.172298 | 7_3:-52836131 | Msa1109340:CDS |
| CCATGTTTGCATACTTTGAT+AGG | 0.193427 | 7_3:-52834902 | Msa1109340:CDS |
| TATTGTTCCTCAAGTTTCTT+TGG | 0.198180 | 7_3:-52835913 | Msa1109340:CDS |
| GAATTTGAGCATGTGGAAAA+AGG | 0.256169 | 7_3:-52834187 | Msa1109340:CDS |
| AATGGAATTGGCTCTGTCTT+TGG | 0.292583 | 7_3:-52834036 | Msa1109340:CDS |
| TCTGAGGGCACATTCTTGAT+AGG | 0.338948 | 7_3:+52834208 | None:intergenic |
| TGAGAGAGAAAATCCATTAA+AGG | 0.340654 | 7_3:+52836118 | None:intergenic |
| GCAGCAACGGTTCCTTTGAC+TGG | 0.348801 | 7_3:-52835987 | Msa1109340:CDS |
| AAGAAATGGGGTGGTGGAAC+TGG | 0.367320 | 7_3:-52836026 | Msa1109340:CDS |
| AGTTGGTAAGATTAAGAAAT+GGG | 0.368351 | 7_3:-52836039 | Msa1109340:CDS |
| TTCATTGAACATGAATTTCT+GGG | 0.384380 | 7_3:-52833838 | Msa1109340:CDS |
| AAAGAAACTTGAGGAACAAT+AGG | 0.385312 | 7_3:+52835915 | None:intergenic |
| TGAAAAGCTCATGAAATATC+AGG | 0.391882 | 7_3:-52834713 | Msa1109340:intron |
| CAGCAACGGTTCCTTTGACT+GGG | 0.392148 | 7_3:-52835986 | Msa1109340:CDS |
| TATTGTGGCTTGCAGGTGTT+TGG | 0.400845 | 7_3:-52833296 | Msa1109340:intron |
| TTGATAAAATTATGACTAGA+AGG | 0.427642 | 7_3:+52832965 | None:intergenic |
| CAATGAAGCTTGTCATTTGA+GGG | 0.428895 | 7_3:+52833854 | None:intergenic |
| ACATGAATTTCTGGGCGAAC+AGG | 0.446561 | 7_3:-52833830 | Msa1109340:intron |
| TGTTGAAATCAGGTTCTTCA+AGG | 0.448017 | 7_3:-52834764 | Msa1109340:intron |
| TTGCTAGTGTGACATGCATA+AGG | 0.453936 | 7_3:-52833104 | Msa1109340:three_prime_UTR |
| TGGTGGAACTGGAAAGGTTA+CGG | 0.455293 | 7_3:-52836015 | Msa1109340:CDS |
| GGTTATATTTGAACCGTTTG+AGG | 0.463497 | 7_3:-52835964 | Msa1109340:CDS |
| TTTGGAAATGGTGTTAAGAA+GGG | 0.465155 | 7_3:-52836089 | Msa1109340:CDS |
| TCAATGAAGCTTGTCATTTG+AGG | 0.489748 | 7_3:+52833853 | None:intergenic |
| CATGTTTGCATACTTTGATA+GGG | 0.500774 | 7_3:-52834901 | Msa1109340:CDS |
| GAGTTGGTAAGATTAAGAAA+TGG | 0.503130 | 7_3:-52836040 | Msa1109340:CDS |
| TAACTTGTTTAGAACGTTCG+TGG | 0.509370 | 7_3:-52834250 | Msa1109340:intron |
| TCTTTCTTAACCTCCTCAAA+CGG | 0.512013 | 7_3:+52835951 | None:intergenic |
| TTCCACATGCTCAAATTCTG+AGG | 0.516359 | 7_3:+52834192 | None:intergenic |
| CTGAGGGCACATTCTTGATA+GGG | 0.526116 | 7_3:+52834209 | None:intergenic |
| GTGTCTCAATTGAGAAGGGT+TGG | 0.530310 | 7_3:-52833656 | Msa1109340:CDS |
| CCTATCAAAGTATGCAAACA+TGG | 0.532849 | 7_3:+52834902 | None:intergenic |
| TAGGGACAACGTGGCACTCA+GGG | 0.535530 | 7_3:-52834883 | Msa1109340:CDS |
| TCATTTGAGGGTCATTGTTG+CGG | 0.538892 | 7_3:+52833866 | None:intergenic |
| ATGGGGTGGTGGAACTGGAA+AGG | 0.540294 | 7_3:-52836021 | Msa1109340:CDS |
| AAGACAGAAATTATTAAAAG+CGG | 0.541522 | 7_3:+52833051 | None:intergenic |
| AGCAACGGTTCCTTTGACTG+GGG | 0.545713 | 7_3:-52835985 | Msa1109340:CDS |
| GAGTGATGAGAAAATAGAAA+TGG | 0.550748 | 7_3:+52836169 | None:intergenic |
| TCAATTGAGAAGGGTTGGAA+AGG | 0.551958 | 7_3:-52833651 | Msa1109340:CDS |
| AGAAGGGTTGGAAAGGGTCA+TGG | 0.553158 | 7_3:-52833644 | Msa1109340:intron |
| TCCACATGCTCAAATTCTGA+GGG | 0.560756 | 7_3:+52834193 | None:intergenic |
| CAATTGAGAAGGGTTGGAAA+GGG | 0.565267 | 7_3:-52833650 | Msa1109340:CDS |
| TTAACAGATGTTACTGCACA+AGG | 0.570011 | 7_3:+52833074 | None:intergenic |
| ATAGGGACAACGTGGCACTC+AGG | 0.574444 | 7_3:-52834884 | Msa1109340:CDS |
| GGTTACGGTTTGTGCAGCAA+CGG | 0.580360 | 7_3:-52836000 | Msa1109340:CDS |
| AGTATGTGTCTCAATTGAGA+AGG | 0.580680 | 7_3:-52833661 | Msa1109340:CDS |
| AAGATTAAGAAATGGGGTGG+TGG | 0.581479 | 7_3:-52836032 | Msa1109340:CDS |
| TCAAATATAACCCCAGTCAA+AGG | 0.586646 | 7_3:+52835975 | None:intergenic |
| AAAATAGAAATGGTTGCTTG+TGG | 0.596864 | 7_3:+52836179 | None:intergenic |
| CAAAGTATGCAAACATGGAG+TGG | 0.606862 | 7_3:+52834907 | None:intergenic |
| TATATTTGAACCGTTTGAGG+AGG | 0.613079 | 7_3:-52835961 | Msa1109340:CDS |
| GCCCTCAGAATTTGAGCATG+TGG | 0.613924 | 7_3:-52834194 | Msa1109340:CDS |
| TGTCTAGCCAAAGAAACTTG+AGG | 0.618586 | 7_3:+52835906 | None:intergenic |
| GTTGGTAAGATTAAGAAATG+GGG | 0.622875 | 7_3:-52836038 | Msa1109340:CDS |
| TGATCAAAGACTTCTTCATG+AGG | 0.628033 | 7_3:-52833268 | Msa1109340:CDS |
| GTATGTGTCTCAATTGAGAA+GGG | 0.632300 | 7_3:-52833660 | Msa1109340:CDS |
| GGTAAGATTAAGAAATGGGG+TGG | 0.657489 | 7_3:-52836035 | Msa1109340:CDS |
| ACGTAGACAGATACTAGAGA+AGG | 0.660234 | 7_3:+52833221 | None:intergenic |
| CTTGTTTAGAACGTTCGTGG+CGG | 0.665468 | 7_3:-52834247 | Msa1109340:intron |
| AAACATGGAGTGGTACACAT+AGG | 0.675664 | 7_3:+52834917 | None:intergenic |
| AGGGACAACGTGGCACTCAG+GGG | 0.713140 | 7_3:-52834882 | Msa1109340:CDS |
| ATACTTTGATAGGGACAACG+TGG | 0.782573 | 7_3:-52834892 | Msa1109340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCATTTTTTTTTTAAAACT+CGG | + | chr7_3:52833808-52833827 | None:intergenic | 10.0% |
| !!! | TATGAATTCATATAAAATTT+TGG | - | chr7_3:52835378-52835397 | Msa1109340:intron | 10.0% |
| !!! | TAGTTTTTAAAAAACTCAAA+TGG | - | chr7_3:52833874-52833893 | Msa1109340:CDS | 15.0% |
| !!! | AGTTTTTAAAAAACTCAAAT+GGG | - | chr7_3:52833875-52833894 | Msa1109340:CDS | 15.0% |
| !!! | TTTTTTTATTTTGCATACAT+TGG | - | chr7_3:52834152-52834171 | Msa1109340:intron | 15.0% |
| !! | TTTATGATTCTTAAAAATGT+TGG | + | chr7_3:52835222-52835241 | None:intergenic | 15.0% |
| !!! | CTATTTTCTTAAATTACTAT+CGG | - | chr7_3:52835726-52835745 | Msa1109340:intron | 15.0% |
| !! | CTAATGAAATTTATATATTG+TGG | - | chr7_3:52835850-52835869 | Msa1109340:intron | 15.0% |
| !!! | TAATTCTTTTAGAAAATCAG+AGG | + | chr7_3:52833841-52833860 | None:intergenic | 20.0% |
| !! | AAATATTAGTGGTACTAATT+TGG | + | chr7_3:52833902-52833921 | None:intergenic | 20.0% |
| !!! | ATGTGAGATTTGAAATTTAT+TGG | - | chr7_3:52833944-52833963 | Msa1109340:intron | 20.0% |
| !!! | TGTGAGATTTGAAATTTATT+GGG | - | chr7_3:52833945-52833964 | Msa1109340:intron | 20.0% |
| !!! | TTTTATATGTAAATTGTAGC+TGG | + | chr7_3:52834056-52834075 | None:intergenic | 20.0% |
| !! | GAAGATTTGTGAATAATAAT+AGG | - | chr7_3:52835265-52835284 | Msa1109340:intron | 20.0% |
| !!! | ACTACAATCATTTTTCATAT+TGG | - | chr7_3:52835555-52835574 | Msa1109340:intron | 20.0% |
| !! | AAGACAGAAATTATTAAAAG+CGG | + | chr7_3:52836113-52836132 | None:intergenic | 20.0% |
| !! | TCTAAAGTTTCATCCTTTAA+TGG | - | chr7_3:52833030-52833049 | Msa1109340:three_prime_UTR | 25.0% |
| ! | TTAACACCATTTCCAAAAAT+GGG | + | chr7_3:52833069-52833088 | None:intergenic | 25.0% |
| !!! | AGTTGGTAAGATTAAGAAAT+GGG | - | chr7_3:52833122-52833141 | Msa1109340:three_prime_UTR | 25.0% |
| !! | CTATAACTTTTCTAACTATG+TGG | - | chr7_3:52833429-52833448 | Msa1109340:intron | 25.0% |
| ! | AACCATAGTTATATCTTGAT+TGG | - | chr7_3:52833516-52833535 | Msa1109340:intron | 25.0% |
| ! | TTCCAATCAAGATATAACTA+TGG | + | chr7_3:52833521-52833540 | None:intergenic | 25.0% |
| !! | GTTAAGTTTTACTTACTTTG+AGG | - | chr7_3:52833550-52833569 | Msa1109340:intron | 25.0% |
| ! | TGTTGATACAAACTTAGATT+TGG | - | chr7_3:52834008-52834027 | Msa1109340:CDS | 25.0% |
| ! | TCAATTAGCATAGTTACAAT+GGG | + | chr7_3:52834183-52834202 | None:intergenic | 25.0% |
| ! | ATCAATTAGCATAGTTACAA+TGG | + | chr7_3:52834184-52834203 | None:intergenic | 25.0% |
| !!! | TTGCTTTTATTGTTGAAATC+AGG | - | chr7_3:52834387-52834406 | Msa1109340:intron | 25.0% |
| ! | AAGCAAAAATCAGCATAATA+CGG | + | chr7_3:52835081-52835100 | None:intergenic | 25.0% |
| ! | GATTTGTGAATAATAATAGG+TGG | - | chr7_3:52835268-52835287 | Msa1109340:intron | 25.0% |
| ! | TTCATTGAACATGAATTTCT+GGG | - | chr7_3:52835323-52835342 | Msa1109340:intron | 25.0% |
| !!! | TGTAAGGGATTCATATTTTT+TGG | - | chr7_3:52835435-52835454 | Msa1109340:intron | 25.0% |
| !! | TTTGGTAATATTCTTTCTTC+AGG | - | chr7_3:52835453-52835472 | Msa1109340:intron | 25.0% |
| !!! | ACATCTTTAATTTGAAGTGT+TGG | + | chr7_3:52835636-52835655 | None:intergenic | 25.0% |
| ! | CTGTCTTCAATAAAAAAAAG+AGG | - | chr7_3:52836126-52836145 | Msa1109340:CDS | 25.0% |
| AAAATAGAAATGGTTGCTTG+TGG | + | chr7_3:52832985-52833004 | None:intergenic | 30.0% | |
| GAGTGATGAGAAAATAGAAA+TGG | + | chr7_3:52832995-52833014 | None:intergenic | 30.0% | |
| ! | TTCTATTTTCTCATCACTCA+TGG | - | chr7_3:52832996-52833015 | Msa1109340:three_prime_UTR | 30.0% |
| TGAGAGAGAAAATCCATTAA+AGG | + | chr7_3:52833046-52833065 | None:intergenic | 30.0% | |
| CTTAACACCATTTCCAAAAA+TGG | + | chr7_3:52833070-52833089 | None:intergenic | 30.0% | |
| !! | TTTTGGAAATGGTGTTAAGA+AGG | - | chr7_3:52833071-52833090 | Msa1109340:three_prime_UTR | 30.0% |
| ! | TTTGGAAATGGTGTTAAGAA+GGG | - | chr7_3:52833072-52833091 | Msa1109340:three_prime_UTR | 30.0% |
| !! | GAGTTGGTAAGATTAAGAAA+TGG | - | chr7_3:52833121-52833140 | Msa1109340:three_prime_UTR | 30.0% |
| ! | GTTGGTAAGATTAAGAAATG+GGG | - | chr7_3:52833123-52833142 | Msa1109340:three_prime_UTR | 30.0% |
| AAAGAAACTTGAGGAACAAT+AGG | + | chr7_3:52833249-52833268 | None:intergenic | 30.0% | |
| TATTGTTCCTCAAGTTTCTT+TGG | - | chr7_3:52833248-52833267 | Msa1109340:exon | 30.0% | |
| ! | TGAGAAGATCAAGCATATTT+TGG | - | chr7_3:52833374-52833393 | Msa1109340:intron | 30.0% |
| ! | AACTTTTCTAACTATGTGGT+TGG | - | chr7_3:52833433-52833452 | Msa1109340:intron | 30.0% |
| CTAAGATTTAGATGGTTGAT+TGG | - | chr7_3:52833457-52833476 | Msa1109340:intron | 30.0% | |
| ! | TTTTAATCCTCCAATTTCCA+AGG | + | chr7_3:52833600-52833619 | None:intergenic | 30.0% |
| !! | ATTGATCCTATTGGATTAGT+CGG | - | chr7_3:52833767-52833786 | Msa1109340:intron | 30.0% |
| TCATGAGGCAAAAATATTAG+TGG | + | chr7_3:52833913-52833932 | None:intergenic | 30.0% | |
| TTTACTCATAAGAAAGCTCT+AGG | - | chr7_3:52834076-52834095 | Msa1109340:intron | 30.0% | |
| CATGTTTGCATACTTTGATA+GGG | - | chr7_3:52834260-52834279 | Msa1109340:intron | 30.0% | |
| TGAAAAGCTCATGAAATATC+AGG | - | chr7_3:52834448-52834467 | Msa1109340:intron | 30.0% | |
| !! | TTAAGTTAGCTCTGTACTTT+AGG | - | chr7_3:52834471-52834490 | Msa1109340:intron | 30.0% |
| !! | TAAGTTAGCTCTGTACTTTA+GGG | - | chr7_3:52834472-52834491 | Msa1109340:intron | 30.0% |
| GAGGTAAGTAAGTTCAAATA+AGG | + | chr7_3:52834511-52834530 | None:intergenic | 30.0% | |
| AATTTGAGCATGTGGAAAAA+GGG | - | chr7_3:52834975-52834994 | Msa1109340:intron | 30.0% | |
| ! | TGTCTCACACATTATAGTTT+TGG | - | chr7_3:52835036-52835055 | Msa1109340:intron | 30.0% |
| !! | TATTCCTTTTGTTTCAGCAA+TGG | - | chr7_3:52835107-52835126 | Msa1109340:intron | 30.0% |
| AATTCCATTGCTGAAACAAA+AGG | + | chr7_3:52835114-52835133 | None:intergenic | 30.0% | |
| !! | TTTTGTTTCAGCAATGGAAT+TGG | - | chr7_3:52835113-52835132 | Msa1109340:intron | 30.0% |
| CTTCATTGAACATGAATTTC+TGG | - | chr7_3:52835322-52835341 | Msa1109340:intron | 30.0% | |
| ! | AAAGTTGCTTTAGCAATGTA+AGG | - | chr7_3:52835419-52835438 | Msa1109340:intron | 30.0% |
| ! | AAGTTGCTTTAGCAATGTAA+GGG | - | chr7_3:52835420-52835439 | Msa1109340:intron | 30.0% |
| CATAGATCGTACTAATTGAT+AGG | + | chr7_3:52835608-52835627 | None:intergenic | 30.0% | |
| TATCATGTATGTGTTGTATC+TGG | - | chr7_3:52835759-52835778 | Msa1109340:intron | 30.0% | |
| ! | ATTTATATATTGTGGCTTGC+AGG | - | chr7_3:52835858-52835877 | Msa1109340:intron | 30.0% |
| ! | TTGATCTTTTATCAAGTGCT+TGG | - | chr7_3:52835963-52835982 | Msa1109340:CDS | 30.0% |
| ! | TTTTCTCTCTCACCCATTTT+TGG | - | chr7_3:52833054-52833073 | Msa1109340:three_prime_UTR | 35.0% |
| ! | TCTTTTTGTGATGTGAGAGT+TGG | - | chr7_3:52833105-52833124 | Msa1109340:three_prime_UTR | 35.0% |
| TCAAATATAACCCCAGTCAA+AGG | + | chr7_3:52833189-52833208 | None:intergenic | 35.0% | |
| GGTTATATTTGAACCGTTTG+AGG | - | chr7_3:52833197-52833216 | Msa1109340:three_prime_UTR | 35.0% | |
| TATATTTGAACCGTTTGAGG+AGG | - | chr7_3:52833200-52833219 | Msa1109340:three_prime_UTR | 35.0% | |
| TCTTTCTTAACCTCCTCAAA+CGG | + | chr7_3:52833213-52833232 | None:intergenic | 35.0% | |
| TGGTTGGACTAAGATTTAGA+TGG | - | chr7_3:52833449-52833468 | Msa1109340:intron | 35.0% | |
| TTAGACTACCAATGATTCCT+TGG | - | chr7_3:52833580-52833599 | Msa1109340:intron | 35.0% | |
| ACCAATGATTCCTTGGAAAT+TGG | - | chr7_3:52833587-52833606 | Msa1109340:intron | 35.0% | |
| TCCAATTTCCAAGGAATCAT+TGG | + | chr7_3:52833591-52833610 | None:intergenic | 35.0% | |
| AATGATTCCTTGGAAATTGG+AGG | - | chr7_3:52833590-52833609 | Msa1109340:intron | 35.0% | |
| GGATAGATACATTTCATGCA+AGG | - | chr7_3:52834029-52834048 | Msa1109340:CDS | 35.0% | |
| CCTATCAAAGTATGCAAACA+TGG | + | chr7_3:52834262-52834281 | None:intergenic | 35.0% | |
| CCATGTTTGCATACTTTGAT+AGG | - | chr7_3:52834259-52834278 | Msa1109340:intron | 35.0% | |
| TGTTGAAATCAGGTTCTTCA+AGG | - | chr7_3:52834397-52834416 | Msa1109340:intron | 35.0% | |
| GGTCTTACAAGTACTTATTG+AGG | + | chr7_3:52834530-52834549 | None:intergenic | 35.0% | |
| TATGAAGCACAAACACTCAT+CGG | + | chr7_3:52834699-52834718 | None:intergenic | 35.0% | |
| AATAAGCTGAAAACAACTCG+TGG | + | chr7_3:52834768-52834787 | None:intergenic | 35.0% | |
| CTTATTTCCATAAGCTCTTC+AGG | - | chr7_3:52834782-52834801 | Msa1109340:intron | 35.0% | |
| ! | CTTTTAGTCAAGCAAATGTC+TGG | + | chr7_3:52834845-52834864 | None:intergenic | 35.0% |
| !! | TAACTTGTTTAGAACGTTCG+TGG | - | chr7_3:52834911-52834930 | Msa1109340:CDS | 35.0% |
| GAATTTGAGCATGTGGAAAA+AGG | - | chr7_3:52834974-52834993 | Msa1109340:intron | 35.0% | |
| ATTTGAGCATGTGGAAAAAG+GGG | - | chr7_3:52834976-52834995 | Msa1109340:intron | 35.0% | |
| TGCTGAAACAAAAGGAATAG+AGG | + | chr7_3:52835106-52835125 | None:intergenic | 35.0% | |
| AAAAAGCTAAAGGGACAAAG+AGG | + | chr7_3:52835195-52835214 | None:intergenic | 35.0% | |
| GTTGGCAAGAAAAAGCTAAA+GGG | + | chr7_3:52835204-52835223 | None:intergenic | 35.0% | |
| TGTTGGCAAGAAAAAGCTAA+AGG | + | chr7_3:52835205-52835224 | None:intergenic | 35.0% | |
| ! | CAATGAAGCTTGTCATTTGA+GGG | + | chr7_3:52835310-52835329 | None:intergenic | 35.0% |
| ! | TCAATGAAGCTTGTCATTTG+AGG | + | chr7_3:52835311-52835330 | None:intergenic | 35.0% |
| AGTATGTGTCTCAATTGAGA+AGG | - | chr7_3:52835500-52835519 | Msa1109340:intron | 35.0% | |
| GTATGTGTCTCAATTGAGAA+GGG | - | chr7_3:52835501-52835520 | Msa1109340:intron | 35.0% | |
| TATGTGTATAGCGAAGTTTG+TGG | + | chr7_3:52835582-52835601 | None:intergenic | 35.0% | |
| ATATCAGACAGTTTCTGTGT+CGG | + | chr7_3:52835668-52835687 | None:intergenic | 35.0% | |
| TGATCAAAGACTTCTTCATG+AGG | - | chr7_3:52835893-52835912 | Msa1109340:CDS | 35.0% | |
| TTAACAGATGTTACTGCACA+AGG | + | chr7_3:52836090-52836109 | None:intergenic | 35.0% | |
| !! | CTCTCACCCATTTTTGGAAA+TGG | - | chr7_3:52833060-52833079 | Msa1109340:three_prime_UTR | 40.0% |
| GGTAAGATTAAGAAATGGGG+TGG | - | chr7_3:52833126-52833145 | Msa1109340:three_prime_UTR | 40.0% | |
| AAGATTAAGAAATGGGGTGG+TGG | - | chr7_3:52833129-52833148 | Msa1109340:three_prime_UTR | 40.0% | |
| TGTCTAGCCAAAGAAACTTG+AGG | + | chr7_3:52833258-52833277 | None:intergenic | 40.0% | |
| ! | TCCCCTAATGCCAATTTTGA+CGG | - | chr7_3:52833684-52833703 | Msa1109340:CDS | 40.0% |
| TCCGTCAAAATTGGCATTAG+GGG | + | chr7_3:52833688-52833707 | None:intergenic | 40.0% | |
| GTCCGTCAAAATTGGCATTA+GGG | + | chr7_3:52833689-52833708 | None:intergenic | 40.0% | |
| TGTCCGTCAAAATTGGCATT+AGG | + | chr7_3:52833690-52833709 | None:intergenic | 40.0% | |
| ATGGACTTGTCCGTCAAAAT+TGG | + | chr7_3:52833697-52833716 | None:intergenic | 40.0% | |
| !! | AGCTTTGCTCTAGCTTTAAG+CGG | - | chr7_3:52833721-52833740 | Msa1109340:intron | 40.0% |
| CAAGAACCGACTAATCCAAT+AGG | + | chr7_3:52833776-52833795 | None:intergenic | 40.0% | |
| !! | CTATTGGATTAGTCGGTTCT+TGG | - | chr7_3:52833774-52833793 | Msa1109340:intron | 40.0% |
| ACATGCAAGAGTTTCTCATG+AGG | + | chr7_3:52833928-52833947 | None:intergenic | 40.0% | |
| GTTTCATTTGTGTGACAGTG+TGG | - | chr7_3:52834209-52834228 | Msa1109340:CDS | 40.0% | |
| AAACATGGAGTGGTACACAT+AGG | + | chr7_3:52834247-52834266 | None:intergenic | 40.0% | |
| CAAAGTATGCAAACATGGAG+TGG | + | chr7_3:52834257-52834276 | None:intergenic | 40.0% | |
| ATACTTTGATAGGGACAACG+TGG | - | chr7_3:52834269-52834288 | Msa1109340:intron | 40.0% | |
| CTTGTAAGACCTATGAAGCA+CGG | - | chr7_3:52834539-52834558 | Msa1109340:intron | 40.0% | |
| TTCAGTGTGATCACATGTGT+CGG | - | chr7_3:52834620-52834639 | Msa1109340:intron | 40.0% | |
| CTTCATAGTGCAACACTGTT+TGG | - | chr7_3:52834712-52834731 | Msa1109340:intron | 40.0% | |
| AAACTGTCCTGAAGAGCTTA+TGG | + | chr7_3:52834792-52834811 | None:intergenic | 40.0% | |
| TCCACATGCTCAAATTCTGA+GGG | + | chr7_3:52834971-52834990 | None:intergenic | 40.0% | |
| TTCCACATGCTCAAATTCTG+AGG | + | chr7_3:52834972-52834991 | None:intergenic | 40.0% | |
| ! | TTGCATGGTGAGTTTGTTTC+TGG | - | chr7_3:52835004-52835023 | Msa1109340:intron | 40.0% |
| !! | AATGGAATTGGCTCTGTCTT+TGG | - | chr7_3:52835125-52835144 | Msa1109340:intron | 40.0% |
| TCATTTGAGGGTCATTGTTG+CGG | + | chr7_3:52835298-52835317 | None:intergenic | 40.0% | |
| TCAATTGAGAAGGGTTGGAA+AGG | - | chr7_3:52835510-52835529 | Msa1109340:intron | 40.0% | |
| CAATTGAGAAGGGTTGGAAA+GGG | - | chr7_3:52835511-52835530 | Msa1109340:intron | 40.0% | |
| GTATGATACTTCCTCCTATG+TGG | - | chr7_3:52835811-52835830 | Msa1109340:intron | 40.0% | |
| ACGTAGACAGATACTAGAGA+AGG | + | chr7_3:52835943-52835962 | None:intergenic | 40.0% | |
| TTGCTAGTGTGACATGCATA+AGG | - | chr7_3:52836057-52836076 | Msa1109340:CDS | 40.0% | |
| TGGTGGAACTGGAAAGGTTA+CGG | - | chr7_3:52833146-52833165 | Msa1109340:three_prime_UTR | 45.0% | |
| AGCTAGAGCAAAGCTCTGTA+TGG | + | chr7_3:52833716-52833735 | None:intergenic | 45.0% | |
| !! | GCTTTGCTCTAGCTTTAAGC+GGG | - | chr7_3:52833722-52833741 | Msa1109340:intron | 45.0% |
| !! | CTTTGCTCTAGCTTTAAGCG+GGG | - | chr7_3:52833723-52833742 | Msa1109340:intron | 45.0% |
| !! | TAGCTCTGTACTTTAGGGTC+TGG | - | chr7_3:52834477-52834496 | Msa1109340:intron | 45.0% |
| AGACCTATGAAGCACGGATA+CGG | - | chr7_3:52834545-52834564 | Msa1109340:intron | 45.0% | |
| ! | CTTGTTTAGAACGTTCGTGG+CGG | - | chr7_3:52834914-52834933 | Msa1109340:CDS | 45.0% |
| ! | CTGAGGGCACATTCTTGATA+GGG | + | chr7_3:52834955-52834974 | None:intergenic | 45.0% |
| ! | TCTGAGGGCACATTCTTGAT+AGG | + | chr7_3:52834956-52834975 | None:intergenic | 45.0% |
| GAAAAAGGGGATGCATTGCA+TGG | - | chr7_3:52834989-52835008 | Msa1109340:intron | 45.0% | |
| ! | ACATGAATTTCTGGGCGAAC+AGG | - | chr7_3:52835331-52835350 | Msa1109340:intron | 45.0% |
| GTGTCTCAATTGAGAAGGGT+TGG | - | chr7_3:52835505-52835524 | Msa1109340:intron | 45.0% | |
| GTCTGATATAGACATGTGCG+TGG | - | chr7_3:52835679-52835698 | Msa1109340:intron | 45.0% | |
| TGATACTTCCTCCTATGTGG+TGG | - | chr7_3:52835814-52835833 | Msa1109340:intron | 45.0% | |
| ! | TATTGTGGCTTGCAGGTGTT+TGG | - | chr7_3:52835865-52835884 | Msa1109340:CDS | 45.0% |
| !! | AAGAAATGGGGTGGTGGAAC+TGG | - | chr7_3:52833135-52833154 | Msa1109340:three_prime_UTR | 50.0% |
| GGTTACGGTTTGTGCAGCAA+CGG | - | chr7_3:52833161-52833180 | Msa1109340:three_prime_UTR | 50.0% | |
| CAGCAACGGTTCCTTTGACT+GGG | - | chr7_3:52833175-52833194 | Msa1109340:three_prime_UTR | 50.0% | |
| AGCAACGGTTCCTTTGACTG+GGG | - | chr7_3:52833176-52833195 | Msa1109340:three_prime_UTR | 50.0% | |
| TTAAGCGGGGACTCCACAAA+TGG | - | chr7_3:52833736-52833755 | Msa1109340:intron | 50.0% | |
| TAAGCGGGGACTCCACAAAT+GGG | - | chr7_3:52833737-52833756 | Msa1109340:intron | 50.0% | |
| TCAATCACACCGCCCATTTG+TGG | + | chr7_3:52833752-52833771 | None:intergenic | 50.0% | |
| GGCGGTGTGATTGATCCTAT+TGG | - | chr7_3:52833758-52833777 | Msa1109340:intron | 50.0% | |
| TGTCCGTATCCGTGCTTCAT+AGG | + | chr7_3:52834551-52834570 | None:intergenic | 50.0% | |
| GTCAGCGTTCATGTCGTGTA+CGG | + | chr7_3:52834574-52834593 | None:intergenic | 50.0% | |
| GCACAAACACTCATCGGATC+AGG | + | chr7_3:52834693-52834712 | None:intergenic | 50.0% | |
| GCCCTCAGAATTTGAGCATG+TGG | - | chr7_3:52834967-52834986 | Msa1109340:intron | 50.0% | |
| AGAAGGGTTGGAAAGGGTCA+TGG | - | chr7_3:52835517-52835536 | Msa1109340:intron | 50.0% | |
| ! | CTTCAGAGTGTCCACCACAT+AGG | + | chr7_3:52835828-52835847 | None:intergenic | 50.0% |
| !! | ATGGGGTGGTGGAACTGGAA+AGG | - | chr7_3:52833140-52833159 | Msa1109340:three_prime_UTR | 55.0% |
| GCAGCAACGGTTCCTTTGAC+TGG | - | chr7_3:52833174-52833193 | Msa1109340:three_prime_UTR | 55.0% | |
| ATAGGGACAACGTGGCACTC+AGG | - | chr7_3:52834277-52834296 | Msa1109340:intron | 55.0% | |
| TAGGGACAACGTGGCACTCA+GGG | - | chr7_3:52834278-52834297 | Msa1109340:intron | 55.0% | |
| !! | CACATGTGTCGGTGTCGTGT+CGG | - | chr7_3:52834631-52834650 | Msa1109340:intron | 55.0% |
| ! | CAGAGTGTCCACCACATAGG+AGG | + | chr7_3:52835825-52835844 | None:intergenic | 55.0% |
| AGGGACAACGTGGCACTCAG+GGG | - | chr7_3:52834279-52834298 | Msa1109340:intron | 60.0% | |
| !! | TGTCGGTGTCGTGTCGGTGT+TGG | - | chr7_3:52834637-52834656 | Msa1109340:intron | 60.0% |
| TCATCGGATCAGGCGTGTCC+CGG | + | chr7_3:52834683-52834702 | None:intergenic | 60.0% | |
| GCGGGGACTCCACAAATGGG+CGG | - | chr7_3:52833740-52833759 | Msa1109340:intron | 65.0% | |
| CACCGATGCGTGTCCGACAC+CGG | - | chr7_3:52834661-52834680 | Msa1109340:intron | 65.0% | |
| ACCGATGCGTGTCCGACACC+GGG | - | chr7_3:52834662-52834681 | Msa1109340:intron | 65.0% | |
| ! | TCCCGGTGTCGGACACGCAT+CGG | + | chr7_3:52834666-52834685 | None:intergenic | 65.0% |
| GATCAGGCGTGTCCCGGTGT+CGG | + | chr7_3:52834677-52834696 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 52832980 | 52836203 | 52832980 | ID=Msa1109340;Name=Msa1109340 |
| chr7_3 | mRNA | 52832980 | 52836203 | 52832980 | ID=Msa1109340-mRNA-1;Parent=Msa1109340;Name=Msa1109340-mRNA-1;_AED=0.17;_eAED=0.17;_QI=35|1|1|1|1|1|8|274|260 |
| chr7_3 | exon | 52832980 | 52833303 | 52832980 | ID=Msa1109340-mRNA-1:exon:11138;Parent=Msa1109340-mRNA-1 |
| chr7_3 | exon | 52833645 | 52833708 | 52833645 | ID=Msa1109340-mRNA-1:exon:11137;Parent=Msa1109340-mRNA-1 |
| chr7_3 | exon | 52833831 | 52833896 | 52833831 | ID=Msa1109340-mRNA-1:exon:11136;Parent=Msa1109340-mRNA-1 |
| chr7_3 | exon | 52833998 | 52834059 | 52833998 | ID=Msa1109340-mRNA-1:exon:11135;Parent=Msa1109340-mRNA-1 |
| chr7_3 | exon | 52834173 | 52834260 | 52834173 | ID=Msa1109340-mRNA-1:exon:11134;Parent=Msa1109340-mRNA-1 |
| chr7_3 | exon | 52834714 | 52834774 | 52834714 | ID=Msa1109340-mRNA-1:exon:11133;Parent=Msa1109340-mRNA-1 |
| chr7_3 | exon | 52834873 | 52834956 | 52834873 | ID=Msa1109340-mRNA-1:exon:11132;Parent=Msa1109340-mRNA-1 |
| chr7_3 | exon | 52835861 | 52836203 | 52835861 | ID=Msa1109340-mRNA-1:exon:11131;Parent=Msa1109340-mRNA-1 |
| chr7_3 | five_prime_UTR | 52836169 | 52836203 | 52836169 | ID=Msa1109340-mRNA-1:five_prime_utr;Parent=Msa1109340-mRNA-1 |
| chr7_3 | CDS | 52835861 | 52836168 | 52835861 | ID=Msa1109340-mRNA-1:cds;Parent=Msa1109340-mRNA-1 |
| chr7_3 | CDS | 52834873 | 52834956 | 52834873 | ID=Msa1109340-mRNA-1:cds;Parent=Msa1109340-mRNA-1 |
| chr7_3 | CDS | 52834714 | 52834774 | 52834714 | ID=Msa1109340-mRNA-1:cds;Parent=Msa1109340-mRNA-1 |
| chr7_3 | CDS | 52834173 | 52834260 | 52834173 | ID=Msa1109340-mRNA-1:cds;Parent=Msa1109340-mRNA-1 |
| chr7_3 | CDS | 52833998 | 52834059 | 52833998 | ID=Msa1109340-mRNA-1:cds;Parent=Msa1109340-mRNA-1 |
| chr7_3 | CDS | 52833831 | 52833896 | 52833831 | ID=Msa1109340-mRNA-1:cds;Parent=Msa1109340-mRNA-1 |
| chr7_3 | CDS | 52833645 | 52833708 | 52833645 | ID=Msa1109340-mRNA-1:cds;Parent=Msa1109340-mRNA-1 |
| chr7_3 | CDS | 52833254 | 52833303 | 52833254 | ID=Msa1109340-mRNA-1:cds;Parent=Msa1109340-mRNA-1 |
| chr7_3 | three_prime_UTR | 52832980 | 52833253 | 52832980 | ID=Msa1109340-mRNA-1:three_prime_utr;Parent=Msa1109340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
