AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1025580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1025580 MtrunA17_Chr7g0243571 95.089 448 19 2 1 446 1 447 0.0 854
Msa1025580 MtrunA17_Chr4g0004971 57.297 370 134 6 1 368 1 348 1.92e-147 424
Msa1025580 MtrunA17_Chr7g0221691 46.556 421 202 8 1 411 42 449 4.91e-120 357
Msa1025580 MtrunA17_Chr7g0249421 45.921 429 183 8 52 431 57 485 2.60e-119 357
Msa1025580 MtrunA17_Chr4g0022171 43.341 413 195 9 56 435 62 468 1.00e-114 345
Msa1025580 MtrunA17_Chr2g0324061 44.203 414 188 8 56 431 56 464 4.89e-110 332
Msa1025580 MtrunA17_Chr7g0272061 45.231 325 171 3 52 374 52 371 3.21e-99 301
Msa1025580 MtrunA17_Chr1g0192421 44.025 318 165 3 47 363 45 350 9.74e-99 300
Msa1025580 MtrunA17_Chr4g0067711 46.302 311 150 4 60 367 60 356 8.61e-98 297
Msa1025580 MtrunA17_Chr2g0295401 46.774 310 150 5 60 367 61 357 1.17e-95 292
Msa1025580 MtrunA17_Chr8g0342431 46.532 346 131 6 52 363 47 372 1.24e-92 286
Msa1025580 MtrunA17_Chr1g0151781 44.984 309 157 3 59 367 37 332 3.07e-89 275
Msa1025580 MtrunA17_Chr4g0066371 27.796 313 162 6 60 344 47 323 2.18e-32 127
Msa1025580 MtrunA17_Chr6g0486661 27.893 337 178 13 64 374 97 394 7.80e-27 114
Msa1025580 MtrunA17_Chr2g0286951 26.603 312 172 5 57 345 48 325 8.34e-27 111
Msa1025580 MtrunA17_Chr3g0136711 29.474 285 143 8 91 374 65 292 3.95e-25 104
Msa1025580 MtrunA17_Chr5g0396731 31.481 270 137 8 60 325 75 300 5.37e-25 105
Msa1025580 MtrunA17_Chr3g0135961 31.469 286 139 13 71 353 269 500 7.21e-24 104
Msa1025580 MtrunA17_Chr1g0150451 29.091 275 138 7 93 366 110 328 8.65e-24 101
Msa1025580 MtrunA17_Chr3g0112291 30.952 252 136 9 74 323 106 321 9.08e-23 99.8
Msa1025580 MtrunA17_Chr1g0150781 34.188 234 117 10 91 322 290 488 9.63e-23 100
Msa1025580 MtrunA17_Chr4g0070871 34.483 232 113 9 91 322 253 445 3.28e-21 96.3
Msa1025580 MtrunA17_Chr1g0212961 27.857 280 137 11 91 368 126 342 8.91e-21 93.2
Msa1025580 MtrunA17_Chr8g0389921 31.897 232 109 9 91 319 198 383 6.00e-20 92.0
Msa1025580 MtrunA17_Chr2g0299981 31.004 229 138 9 91 318 267 476 2.60e-19 90.5
Msa1025580 MtrunA17_Chr5g0435721 28.517 263 126 7 74 323 206 419 1.84e-18 87.4
Msa1025580 MtrunA17_Chr2g0293811 27.508 309 153 11 61 342 53 317 2.06e-18 86.7
Msa1025580 MtrunA17_Chr4g0051661 38.272 162 84 6 180 340 235 381 5.58e-18 85.5
Msa1025580 MtrunA17_Chr1g0194191 28.244 262 134 9 91 342 118 335 4.62e-17 82.8
Msa1025580 MtrunA17_Chr6g0483411 28.241 216 120 6 164 363 122 318 5.06e-17 81.6
Msa1025580 MtrunA17_Chr2g0317021 37.821 156 81 6 187 341 177 317 1.37e-16 80.5
Msa1025580 MtrunA17_Chr3g0105351 26.087 322 176 11 1 322 15 274 1.71e-16 80.1
Msa1025580 MtrunA17_Chr3g0105371 28.736 261 135 10 62 322 89 298 3.38e-16 79.7
Msa1025580 MtrunA17_Chr5g0430481 27.586 261 138 9 62 322 125 334 5.15e-16 79.3
Msa1025580 MtrunA17_Chr8g0360351 28.136 295 152 12 55 341 24 266 5.81e-16 78.2
Msa1025580 MtrunA17_Chr3g0115851 37.580 157 82 6 187 342 126 267 6.21e-16 77.8
Msa1025580 MtrunA17_Chr1g0171571 25.581 301 176 10 64 363 391 644 7.25e-16 80.1
Msa1025580 MtrunA17_Chr4g0050381 35.897 156 84 6 187 341 121 261 1.02e-15 77.4
Msa1025580 MtrunA17_Chr7g0256751 25.464 377 200 15 57 391 40 377 2.10e-15 78.2
Msa1025580 MtrunA17_Chr3g0136811 25.077 323 190 10 45 341 13 309 5.25e-15 76.3
Msa1025580 MtrunA17_Chr1g0158781 30.901 233 114 9 91 323 145 330 6.92e-15 76.3
Msa1025580 MtrunA17_Chr2g0279151 34.395 157 87 6 187 342 125 266 9.59e-15 74.3
Msa1025580 MtrunA17_Chr5g0426141 36.306 157 84 6 187 342 126 267 2.32e-14 73.2
Msa1025580 MtrunA17_Chr5g0407161 26.937 271 116 8 91 342 124 331 4.31e-14 73.6
Msa1025580 MtrunA17_Chr3g0126511 25.974 231 119 7 93 322 127 306 6.72e-14 72.8
Msa1025580 MtrunA17_Chr3g0138281 25.784 287 145 10 91 367 121 349 3.66e-13 70.9
Msa1025580 MtrunA17_Chr7g0238501 24.026 308 169 11 63 341 239 510 1.02e-12 70.1
Msa1025580 MtrunA17_Chr4g0001761 27.863 262 144 10 86 323 47 287 3.29e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1025580 AT5G01700.2 50.938 373 145 4 1 367 1 341 6.85e-131 383
Msa1025580 AT5G01700.1 53.443 305 129 1 63 367 1 292 4.31e-121 356
Msa1025580 AT1G79630.1 42.991 428 191 6 56 430 63 490 5.61e-120 359
Msa1025580 AT1G16220.1 44.019 418 191 6 56 430 60 477 6.61e-120 359
Msa1025580 AT1G79630.8 42.991 428 191 6 56 430 59 486 7.02e-120 359
Msa1025580 AT5G36250.1 48.611 360 167 7 38 383 46 401 7.55e-117 350
Msa1025580 AT1G03590.1 44.527 402 194 6 56 430 56 455 6.82e-114 342
Msa1025580 AT5G36250.2 46.791 374 167 8 38 383 46 415 1.12e-112 339
Msa1025580 AT4G03415.1 45.274 402 188 8 63 436 70 467 4.03e-112 338
Msa1025580 AT4G03415.3 45.274 402 188 8 63 436 70 467 4.03e-112 338
Msa1025580 AT4G03415.2 45.274 402 188 8 63 436 70 467 4.03e-112 338
Msa1025580 AT3G02750.2 44.573 433 182 7 54 430 58 488 5.31e-112 338
Msa1025580 AT3G02750.1 44.573 433 182 7 54 430 58 488 5.31e-112 338
Msa1025580 AT1G79630.2 41.935 403 181 6 81 430 18 420 1.78e-108 328
Msa1025580 AT1G79630.7 41.935 403 181 6 81 430 18 420 1.78e-108 328
Msa1025580 AT3G02750.3 41.151 469 183 8 54 431 58 524 2.60e-104 320
Msa1025580 AT1G79630.6 49.315 292 123 4 164 430 89 380 1.47e-96 296
Msa1025580 AT1G79630.3 49.315 292 123 4 164 430 89 380 1.47e-96 296
Msa1025580 AT1G79630.4 49.315 292 123 4 164 430 89 380 1.47e-96 296
Msa1025580 AT1G79630.5 49.315 292 123 4 164 430 89 380 1.47e-96 296
Msa1025580 AT3G05640.2 44.660 309 153 3 56 363 58 349 4.36e-94 288
Msa1025580 AT3G05640.1 44.660 309 153 3 56 363 58 349 4.36e-94 288
Msa1025580 AT3G05640.3 44.660 309 153 3 56 363 58 349 4.36e-94 288
Msa1025580 AT5G27930.1 43.450 313 163 4 52 362 53 353 1.27e-92 285
Msa1025580 AT5G27930.2 43.450 313 163 4 52 362 53 353 1.27e-92 285
Msa1025580 AT3G16800.2 41.311 351 181 5 16 363 20 348 1.22e-88 274
Msa1025580 AT3G16800.1 41.311 351 181 5 16 363 20 348 1.22e-88 274
Msa1025580 AT3G16800.3 41.311 351 181 5 16 363 20 348 1.22e-88 274
Msa1025580 AT5G36250.3 47.241 290 138 6 38 313 46 334 4.12e-87 270
Msa1025580 AT3G16800.4 44.322 273 129 4 94 363 1 253 1.37e-74 234
Msa1025580 AT3G16800.6 44.322 273 129 4 94 363 1 253 1.37e-74 234
Msa1025580 AT5G27930.3 40.909 264 136 3 52 310 53 301 1.03e-72 232
Msa1025580 AT5G26010.1 40.708 339 173 6 33 367 16 330 3.33e-72 231
Msa1025580 AT4G32950.1 41.368 307 147 5 62 366 44 319 4.55e-71 228
Msa1025580 AT4G32950.2 41.833 251 113 5 62 310 44 263 3.69e-53 180
Msa1025580 AT3G16800.5 34.498 229 125 5 16 241 20 226 1.60e-35 132
Msa1025580 AT3G06270.1 27.986 293 155 6 73 345 70 326 1.56e-30 121
Msa1025580 AT2G20050.2 27.160 324 172 10 64 364 116 398 9.86e-29 120
Msa1025580 AT2G20050.1 27.160 324 172 10 64 364 116 398 1.06e-28 120
Msa1025580 AT4G31750.2 27.719 285 146 9 85 366 56 283 1.78e-23 100
Msa1025580 AT4G31750.1 27.719 285 146 9 85 366 56 283 2.61e-23 100
Msa1025580 AT4G31750.3 27.719 285 146 9 85 366 56 283 2.61e-23 100
Msa1025580 AT5G24940.1 30.159 252 126 6 91 342 64 265 1.95e-22 99.8
Msa1025580 AT1G72770.4 32.780 241 121 8 91 322 238 446 4.08e-22 99.4
Msa1025580 AT1G72770.1 32.780 241 121 8 91 322 238 446 4.08e-22 99.4
Msa1025580 AT1G72770.3 32.780 241 121 8 91 322 238 446 4.08e-22 99.4
Msa1025580 AT5G10740.1 30.556 252 125 7 91 342 64 265 8.31e-22 96.7
Msa1025580 AT5G10740.2 30.556 252 125 7 91 342 64 265 8.31e-22 96.7
Msa1025580 AT1G07430.1 37.288 177 83 5 160 323 193 354 1.91e-20 93.6
Msa1025580 AT5G59220.1 31.452 248 108 9 88 323 145 342 1.33e-19 90.9
Msa1025580 AT5G57050.1 31.466 232 119 7 91 322 160 351 2.39e-19 90.1
Msa1025580 AT5G57050.2 31.466 232 119 7 91 322 120 311 2.53e-19 89.7
Msa1025580 AT1G17550.1 29.752 242 120 8 91 318 237 442 4.11e-19 90.1
Msa1025580 AT1G17550.2 29.752 242 120 8 91 318 237 442 4.11e-19 90.1
Msa1025580 AT4G26080.1 32.895 228 111 9 91 318 172 357 9.15e-19 88.6
Msa1025580 AT1G43900.1 31.076 251 120 9 89 338 152 350 1.63e-18 87.4
Msa1025580 AT1G67820.2 26.332 319 179 9 63 380 87 350 3.59e-18 86.7
Msa1025580 AT2G34740.1 32.663 199 111 8 166 363 159 335 3.69e-18 85.9
Msa1025580 AT1G67820.1 26.019 319 180 9 63 380 123 386 4.92e-18 86.7
Msa1025580 AT3G11410.1 35.326 184 83 6 160 322 173 341 1.18e-17 85.1
Msa1025580 AT5G02760.1 26.074 326 159 12 91 375 72 356 1.68e-17 84.3
Msa1025580 AT5G51760.2 33.168 202 108 6 153 342 155 341 1.69e-17 84.3
Msa1025580 AT4G28400.3 30.068 296 145 15 55 341 3 245 1.82e-17 82.4
Msa1025580 AT5G51760.1 33.168 202 108 6 153 342 185 371 2.27e-17 84.3
Msa1025580 AT4G28400.1 29.054 296 148 13 55 341 25 267 3.57e-17 82.0
Msa1025580 AT1G78200.5 33.146 178 105 5 166 342 59 223 6.90e-17 80.1
Msa1025580 AT1G78200.4 33.146 178 105 5 166 342 59 223 6.90e-17 80.1
Msa1025580 AT2G40180.1 28.179 291 154 10 60 342 128 371 7.94e-17 82.4
Msa1025580 AT3G17250.1 27.559 254 124 8 89 329 156 362 8.21e-17 82.8
Msa1025580 AT1G78200.1 33.146 178 105 5 166 342 104 268 9.11e-17 80.9
Msa1025580 AT1G78200.3 33.146 178 105 5 166 342 104 268 9.11e-17 80.9
Msa1025580 AT1G78200.2 33.146 178 105 5 166 342 104 268 9.11e-17 80.9
Msa1025580 AT2G29380.1 35.165 182 77 9 160 322 150 309 9.25e-17 82.0
Msa1025580 AT5G53140.1 27.626 257 132 9 87 340 126 331 1.58e-16 81.6
Msa1025580 AT5G53140.2 27.626 257 132 9 87 340 126 331 1.58e-16 81.6
Msa1025580 AT2G25620.1 27.063 303 155 11 75 367 114 360 2.78e-16 80.9
Msa1025580 AT2G25620.2 27.063 303 155 11 75 367 114 360 2.78e-16 80.9
Msa1025580 AT2G20630.1 28.516 256 117 10 94 341 66 263 2.89e-16 79.3
Msa1025580 AT1G07160.1 28.352 261 138 9 62 322 124 335 3.97e-16 80.1
Msa1025580 AT3G62260.3 28.571 238 123 8 91 323 27 222 4.46e-16 79.0
Msa1025580 AT2G20630.2 28.516 256 117 10 94 341 66 263 6.59e-16 78.6
Msa1025580 AT3G62260.2 28.571 238 123 8 91 323 117 312 1.03e-15 79.0
Msa1025580 AT3G62260.1 28.571 238 123 8 91 323 116 311 1.09e-15 79.0
Msa1025580 AT1G18030.1 27.650 217 122 5 163 363 151 348 2.81e-15 77.4
Msa1025580 AT1G48040.1 28.862 246 125 8 91 329 116 318 8.25e-15 76.3
Msa1025580 AT2G30020.1 27.203 261 141 10 62 322 141 352 1.92e-14 75.1
Msa1025580 AT1G34750.2 36.709 158 82 6 187 342 126 267 2.02e-14 73.9
Msa1025580 AT1G34750.1 36.709 158 82 6 187 342 126 267 2.02e-14 73.9
Msa1025580 AT1G34750.3 36.709 158 82 6 187 342 126 267 2.02e-14 73.9
Msa1025580 AT2G40860.4 30.102 196 115 8 170 363 375 550 2.99e-14 75.1
Msa1025580 AT2G40860.2 32.258 155 91 5 170 323 473 614 4.62e-14 74.7
Msa1025580 AT2G40860.1 32.258 155 91 5 170 323 473 614 6.17e-14 74.3
Msa1025580 AT2G34740.2 31.953 169 98 7 166 333 173 325 2.26e-13 71.2
Msa1025580 AT2G34740.3 31.953 169 98 7 166 333 155 307 2.56e-13 70.9
Msa1025580 AT3G15260.2 35.256 156 85 6 187 341 133 273 3.65e-13 70.1
Msa1025580 AT3G15260.1 35.256 156 85 6 187 341 133 273 3.65e-13 70.1
Msa1025580 AT4G31860.3 27.815 302 168 13 45 323 13 287 3.68e-13 70.5
Msa1025580 AT4G31860.1 26.562 320 185 13 45 341 13 305 5.08e-13 70.5
Msa1025580 AT1G22280.1 35.669 157 85 6 187 342 125 266 1.01e-12 68.9
Msa1025580 AT1G22280.3 35.669 157 85 6 187 342 131 272 1.11e-12 68.9
Msa1025580 AT3G51470.1 24.627 268 141 10 64 323 76 290 4.97e-12 67.4
Msa1025580 AT3G51470.2 24.627 268 141 10 64 323 32 246 7.62e-12 66.6
Msa1025580 AT1G18030.2 28.221 163 92 3 163 313 151 300 8.61e-12 66.2
Msa1025580 AT2G25070.1 30.909 165 87 6 186 341 159 305 9.38e-12 66.6
Msa1025580 AT2G25070.2 30.909 165 87 6 186 341 159 305 9.38e-12 66.6
Msa1025580 AT1G34750.4 37.681 138 66 7 187 322 126 245 4.54e-11 63.5

Find 116 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTAAAATGTTGTATATTT+AGG 0.180151 7_1:-56336481 Msa1025580:three_prime_UTR
TTTGCTGCTGTTGACTTTCT+TGG 0.181729 7_1:+56336884 None:intergenic
CCAGTTGATAGTTGGAAATT+TGG 0.206532 7_1:-56337771 Msa1025580:CDS
TTGAAGAATTTAGAACTTAT+TGG 0.221539 7_1:-56336443 Msa1025580:three_prime_UTR
GCAAGATGAATTTGTTGTTT+TGG 0.234194 7_1:-56337382 Msa1025580:CDS
CAATCATCTAAGCACCTTAA+TGG 0.234478 7_1:-56336551 Msa1025580:CDS
CAACAGCCACCCATGTTTCT+TGG 0.244069 7_1:+56339050 None:intergenic
GGAAGGAAGGGTGGGAATTA+AGG 0.256545 7_1:+56339129 None:intergenic
TGAAGAATTTAGAACTTATT+GGG 0.257624 7_1:-56336442 Msa1025580:three_prime_UTR
AATGCCTTCAACTTCCATTA+AGG 0.307538 7_1:+56336537 None:intergenic
GCTATTGATAACATTGATAA+TGG 0.318337 7_1:+56336243 None:intergenic
ACCAAGATTCAATGACTGTT+TGG 0.326044 7_1:-56338824 Msa1025580:CDS
CAGTTGATAGTTGGAAATTT+GGG 0.326425 7_1:-56337770 Msa1025580:CDS
AACCGGATGTGTACAGAATA+TGG 0.329139 7_1:-56337518 Msa1025580:CDS
ACTATCTGAAGCAATCAAAA+TGG 0.340437 7_1:-56338187 Msa1025580:CDS
TCTGAAATCGTTTGATGAAA+TGG 0.343971 7_1:-56338043 Msa1025580:CDS
CCAAGATTCAATGACTGTTT+GGG 0.365877 7_1:-56338823 Msa1025580:CDS
GATTGAGAATGTGATAAAAT+AGG 0.372960 7_1:+56336764 None:intergenic
AGCTGTAGCTTTAATTAAAC+AGG 0.381379 7_1:-56337968 Msa1025580:intron
ACAACATATCCCTTGCTTCA+TGG 0.386921 7_1:-56338077 Msa1025580:CDS
CCCAAACAGTCATTGAATCT+TGG 0.388360 7_1:+56338823 None:intergenic
CAATACTTACTTGGAATATC+CGG 0.392328 7_1:+56337674 None:intergenic
GGAGCAATGGTTAGATTAAG+AGG 0.393042 7_1:-56338897 Msa1025580:CDS
AGCCACGATGTTGCTCTTAG+AGG 0.393147 7_1:-56339026 Msa1025580:CDS
TTAGCTATGTCAAGAGCCTT+TGG 0.396496 7_1:-56337471 Msa1025580:CDS
AAATCAACGGTAAGTTGAAC+AGG 0.405496 7_1:+56337701 None:intergenic
GGTAAATAATTAGTTAATGA+TGG 0.415860 7_1:+56336264 None:intergenic
GTCTTCTGTGGCGTGTTTGA+CGG 0.416167 7_1:-56338267 Msa1025580:CDS
CTCATATTTCTAGCAAGCCT+TGG 0.424591 7_1:+56336581 None:intergenic
AACAACAAATTCATCTTGCT+TGG 0.431974 7_1:+56337386 None:intergenic
GAAGACAATGAAACTGTTGC+TGG 0.432915 7_1:-56336680 Msa1025580:CDS
ACTTACCGTTGATTTGAAAC+CGG 0.436160 7_1:-56337693 Msa1025580:CDS
ATTAGCATCATAGTATTTGT+TGG 0.436523 7_1:+56338152 None:intergenic
CAACATATCCCTTGCTTCAT+GGG 0.437188 7_1:-56338076 Msa1025580:CDS
CAGGGTGACCAGTTGATAGT+TGG 0.439596 7_1:-56337779 Msa1025580:CDS
AATTTAGAACTTATTGGGGT+TGG 0.445541 7_1:-56336437 Msa1025580:three_prime_UTR
CAGGACTATGCTGGAGAAGA+AGG 0.456514 7_1:-56338294 Msa1025580:CDS
CCAAATTTCCAACTATCAAC+TGG 0.463615 7_1:+56337771 None:intergenic
ATGCCTGATGATGACTGTCC+TGG 0.467938 7_1:-56337495 Msa1025580:CDS
GAAACTGTTGCTGGAAAAGT+TGG 0.469501 7_1:-56336671 Msa1025580:CDS
ATCATCAAGAAACAAGCATA+TGG 0.471604 7_1:+56336790 None:intergenic
GCCTGGATGTATAAGTATCC+TGG 0.473714 7_1:-56336836 Msa1025580:CDS
GAAGAATGGAAAGCTCTTGA+AGG 0.479840 7_1:-56336635 Msa1025580:CDS
GAATCTTTAGCTGTGAAGGA+AGG 0.481881 7_1:-56337560 Msa1025580:CDS
TTATACCTCAAAAGATGTAA+TGG 0.487329 7_1:-56336315 Msa1025580:three_prime_UTR
CTCGTGCAGTTCTTTGCACA+AGG 0.487423 7_1:-56337742 Msa1025580:CDS
AATCCAGGACAGTCATCATC+AGG 0.497520 7_1:+56337492 None:intergenic
TTATCTGCTATATAGAATGA+TGG 0.500312 7_1:-56336208 None:intergenic
TGGAAAAGTTGGAGTGGAAC+TGG 0.501997 7_1:-56336660 Msa1025580:CDS
GAAAGAAACATGCAAAGAGT+TGG 0.505537 7_1:+56339162 None:intergenic
ATCCATATTCTGTACACATC+CGG 0.505921 7_1:+56337516 None:intergenic
TAATATTTGTGAAGGAAGGA+AGG 0.505957 7_1:+56339116 None:intergenic
TCAAGAATCTTTAGCTGTGA+AGG 0.508129 7_1:-56337564 Msa1025580:CDS
TTTCGCCGCAGATGAAGAAC+CGG 0.510296 7_1:-56337535 Msa1025580:CDS
TGTGGCGTGTTTGACGGTCA+TGG 0.512054 7_1:-56338261 Msa1025580:CDS
TTCCTCAATGTCTTATAAGA+AGG 0.512189 7_1:+56336287 None:intergenic
AAAATTTAAATTTAATGATG+AGG 0.514871 7_1:-56336397 Msa1025580:three_prime_UTR
GGAATAATATTTGTGAAGGA+AGG 0.516144 7_1:+56339112 None:intergenic
GTTGAAACCGAGGTGAATGA+TGG 0.518422 7_1:-56338990 Msa1025580:CDS
AAATGGATGATCATCTTGCT+CGG 0.523245 7_1:-56338026 Msa1025580:CDS
ATATATTATCAGGACTATGC+TGG 0.527095 7_1:-56338303 Msa1025580:intron
TAAAGCGCGCTGTTAAAGCC+TGG 0.527207 7_1:-56336853 Msa1025580:CDS
ATTTGTGAAGGAAGGAAGGG+TGG 0.530774 7_1:+56339120 None:intergenic
TTTGACGGTCATGGTCCTCT+AGG 0.530863 7_1:-56338252 Msa1025580:CDS
GAAGAATTTAGAACTTATTG+GGG 0.536412 7_1:-56336441 Msa1025580:three_prime_UTR
GAGCAATGGTTAGATTAAGA+GGG 0.539562 7_1:-56338896 Msa1025580:CDS
AGCACCTTAATGGAAGTTGA+AGG 0.541332 7_1:-56336541 Msa1025580:exon
ATTCAATATCAAAACTTCCA+AGG 0.542466 7_1:-56336598 Msa1025580:CDS
AACATCCTTCCCATGAAGCA+AGG 0.545861 7_1:+56338067 None:intergenic
TGCAAAGAGTTGGAAGAGAC+AGG 0.547832 7_1:+56339172 None:intergenic
AATCTTTAGCTGTGAAGGAA+GGG 0.549092 7_1:-56337559 Msa1025580:CDS
GATTGCTTCAGATAGTTTCG+AGG 0.550025 7_1:+56338194 None:intergenic
TGTTGATGCGGTTACTATTG+TGG 0.552058 7_1:+56338097 None:intergenic
ATATCCCTTGCTTCATGGGA+AGG 0.553019 7_1:-56338072 Msa1025580:CDS
GAGTGGAACTGGATGAAGAA+TGG 0.555708 7_1:-56336649 Msa1025580:CDS
TGCCTTCTTATAAGACATTG+AGG 0.556688 7_1:-56336289 Msa1025580:three_prime_UTR
GTGGACATTGTCAAAATTGT+CGG 0.556822 7_1:+56338119 None:intergenic
GTTGCTCTTAGAGGAGGAGG+AGG 0.558281 7_1:-56339017 Msa1025580:CDS
TCCAGGATACTTATACATCC+AGG 0.559238 7_1:+56336835 None:intergenic
GCTCTTGACATAGCTAATCC+AGG 0.563331 7_1:+56337477 None:intergenic
AATGGATGATCATCTTGCTC+GGG 0.566783 7_1:-56338025 Msa1025580:CDS
ACGTTGTCTTCCAAGAAACA+TGG 0.567860 7_1:-56339060 Msa1025580:exon
TATACACAACAAGGTATGAA+AGG 0.568417 7_1:-56338852 Msa1025580:CDS
AGACAGGAACATGGAAGAAG+TGG 0.568550 7_1:+56339188 None:intergenic
AATATCCGGTTTCAAATCAA+CGG 0.569234 7_1:+56337688 None:intergenic
AATCAAAATGGCACAACAGA+AGG 0.572079 7_1:-56338175 Msa1025580:CDS
AGTTGGAAGAGACAGGAACA+TGG 0.574600 7_1:+56339179 None:intergenic
TTGTGATAAGCTCTAATAAG+TGG 0.579319 7_1:-56336516 Msa1025580:three_prime_UTR
GCTGTCACGTATCAAAATGA+TGG 0.579947 7_1:-56338918 Msa1025580:CDS
TTTGTGAAGGAAGGAAGGGT+GGG 0.585543 7_1:+56339121 None:intergenic
GAATGGAATAATATTTGTGA+AGG 0.592762 7_1:+56339108 None:intergenic
AAGAATGGAAAGCTCTTGAA+GGG 0.594451 7_1:-56336634 Msa1025580:CDS
AGGAGGCAGAGTTGAAACCG+AGG 0.596046 7_1:-56339000 Msa1025580:CDS
GTATCAAAATGATGGAGCAA+TGG 0.597945 7_1:-56338910 Msa1025580:CDS
GATGTTGCTCTTAGAGGAGG+AGG 0.599534 7_1:-56339020 Msa1025580:CDS
CACGATGTTGCTCTTAGAGG+AGG 0.613102 7_1:-56339023 Msa1025580:CDS
CACATCCGGTTCTTCATCTG+CGG 0.614367 7_1:+56337530 None:intergenic
ACATCCTTCCCATGAAGCAA+GGG 0.615226 7_1:+56338068 None:intergenic
ATTGCTTCAGATAGTTTCGA+GGG 0.615251 7_1:+56338195 None:intergenic
CAAGGGATATGTTGTTGATG+CGG 0.616397 7_1:+56338085 None:intergenic
AATATTTGTGAAGGAAGGAA+GGG 0.616617 7_1:+56339117 None:intergenic
CTATGCTGGAGAAGAAGGCA+TGG 0.621989 7_1:-56338289 Msa1025580:CDS
AACACTGATAGCTATTGCAG+TGG 0.622757 7_1:-56337997 Msa1025580:CDS
CGTTGTCTTCCAAGAAACAT+GGG 0.631651 7_1:-56339059 Msa1025580:exon
TCGTGCAGTTCTTTGCACAA+GGG 0.632091 7_1:-56337741 Msa1025580:CDS
AGATTCAATGACTGTTTGGG+AGG 0.633406 7_1:-56338820 Msa1025580:intron
ATATTCTCCATCATTCACCT+CGG 0.635736 7_1:+56338983 None:intergenic
ACACATCTGGTGATGCAATG+AGG 0.636186 7_1:+56337424 None:intergenic
GAAGAAGGCATGGTCTTCTG+TGG 0.636280 7_1:-56338279 Msa1025580:CDS
TGCGAAACTTTGTGTCCTAG+AGG 0.636288 7_1:+56338237 None:intergenic
GTTTCAATGTATACACAACA+AGG 0.640908 7_1:-56338861 Msa1025580:CDS
AGGAACATGGAAGAAGTGGT+TGG 0.642642 7_1:+56339192 None:intergenic
TGATGCGGTTACTATTGTGG+TGG 0.653844 7_1:+56338100 None:intergenic
TGTTGCTGGAAAAGTTGGAG+TGG 0.662878 7_1:-56336666 Msa1025580:CDS
CTCCTCTAAGAGCAACATCG+TGG 0.712569 7_1:+56339024 None:intergenic
TGTCTTCCAAGAAACATGGG+TGG 0.731949 7_1:-56339056 Msa1025580:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTTAAATTTAATGATG+AGG - chr7_1:56339005-56339024 Msa1025580:CDS 10.0%
!! AATGATTAATCAAATTGAAA+TGG + chr7_1:56336779-56336798 None:intergenic 15.0%
!! AATTATGTGATTTAATCTTA+TGG - chr7_1:56336999-56337018 Msa1025580:intron 15.0%
!!! TAATTTTATCAATGTTTTTC+AGG - chr7_1:56337808-56337827 Msa1025580:intron 15.0%
!!! TTTCATTTTTTTAACAGATA+TGG - chr7_1:56338450-56338469 Msa1025580:intron 15.0%
!!! TTCATTTTTTTAACAGATAT+GGG - chr7_1:56338451-56338470 Msa1025580:intron 15.0%
!!! GTTTGATGAATTTTTGTTTT+TGG - chr7_1:56336682-56336701 Msa1025580:CDS 20.0%
!!! TTTTTTTCAATCAATTCTTG+TGG - chr7_1:56336719-56336738 Msa1025580:CDS 20.0%
!!! TTTTTTCAATCAATTCTTGT+GGG - chr7_1:56336720-56336739 Msa1025580:CDS 20.0%
!! AATCTTGACAATTACATTAT+TGG + chr7_1:56336856-56336875 None:intergenic 20.0%
!! TGGACTTTATTATTAGATTA+TGG - chr7_1:56337019-56337038 Msa1025580:intron 20.0%
!! ACCTTAGAATTAAAAATCAA+GGG + chr7_1:56338087-56338106 None:intergenic 20.0%
!! AACCTTAGAATTAAAAATCA+AGG + chr7_1:56338088-56338107 None:intergenic 20.0%
!! ATCTGTTAAAAAAATGAAAC+CGG + chr7_1:56338449-56338468 None:intergenic 20.0%
!! ACCTAAAATGTTGTATATTT+AGG - chr7_1:56338921-56338940 Msa1025580:CDS 20.0%
!!! ACCTAAATATACAACATTTT+AGG + chr7_1:56338925-56338944 None:intergenic 20.0%
!!! TTGAAGAATTTAGAACTTAT+TGG - chr7_1:56338959-56338978 Msa1025580:CDS 20.0%
!!! TGAAGAATTTAGAACTTATT+GGG - chr7_1:56338960-56338979 Msa1025580:CDS 20.0%
!!! AGTTTTTCACTCAAATATTT+AGG - chr7_1:56339047-56339066 Msa1025580:exon 20.0%
!!! GTTTTTCACTCAAATATTTA+GGG - chr7_1:56339048-56339067 Msa1025580:exon 20.0%
!!! TTTTTCACTCAAATATTTAG+GGG - chr7_1:56339049-56339068 Msa1025580:exon 20.0%
!! GGTAAATAATTAGTTAATGA+TGG + chr7_1:56339141-56339160 None:intergenic 20.0%
! GAATGGAATAATATTTGTGA+AGG + chr7_1:56336297-56336316 None:intergenic 25.0%
!!! GATGAATTTTTGTTTTTGGT+TGG - chr7_1:56336686-56336705 Msa1025580:CDS 25.0%
!!! ATTTTAGTAGTAACTCCTAA+AGG + chr7_1:56336911-56336930 None:intergenic 25.0%
! CATAATTCTATGATTATTGC+TGG + chr7_1:56336986-56337005 None:intergenic 25.0%
! AATTGATGAAATGTAACATG+TGG - chr7_1:56337053-56337072 Msa1025580:intron 25.0%
! TGGATATGCTATATATTATC+AGG - chr7_1:56337089-56337108 Msa1025580:intron 25.0%
! ATTAGCATCATAGTATTTGT+TGG + chr7_1:56337253-56337272 None:intergenic 25.0%
! TTACATAAGGTAAGAAATCA+TGG - chr7_1:56337473-56337492 Msa1025580:CDS 25.0%
! TTGATATACCAATACTTACT+TGG + chr7_1:56337740-56337759 None:intergenic 25.0%
! AAATTACAACTAGATCTGAT+AGG + chr7_1:56337794-56337813 None:intergenic 25.0%
!! GACTTTTGTCTAAAAGATTA+TGG - chr7_1:56337955-56337974 Msa1025580:intron 25.0%
!! ATTTTTCTGTAAAACACATC+TGG + chr7_1:56337994-56338013 None:intergenic 25.0%
!!! ACCCTTGATTTTTAATTCTA+AGG - chr7_1:56338083-56338102 Msa1025580:CDS 25.0%
! TCTAAAAAATTTAGCTGTGT+CGG + chr7_1:56338185-56338204 None:intergenic 25.0%
! TAACATAACAATTGTGTATC+CGG + chr7_1:56338357-56338376 None:intergenic 25.0%
! GATTGAGAATGTGATAAAAT+AGG + chr7_1:56338641-56338660 None:intergenic 25.0%
! ATTCAATATCAAAACTTCCA+AGG - chr7_1:56338804-56338823 Msa1025580:intron 25.0%
! TATTTAGGTGCAAAAAAATG+AGG - chr7_1:56338936-56338955 Msa1025580:CDS 25.0%
!! GAAGAATTTAGAACTTATTG+GGG - chr7_1:56338961-56338980 Msa1025580:CDS 25.0%
!! TTGAGGTATAAGCAAATTTT+TGG + chr7_1:56339078-56339097 None:intergenic 25.0%
! TTATACCTCAAAAGATGTAA+TGG - chr7_1:56339087-56339106 Msa1025580:five_prime_UTR 25.0%
!! GCTATTGATAACATTGATAA+TGG + chr7_1:56339162-56339181 None:intergenic 25.0%
AATATTTGTGAAGGAAGGAA+GGG + chr7_1:56336288-56336307 None:intergenic 30.0%
TAATATTTGTGAAGGAAGGA+AGG + chr7_1:56336289-56336308 None:intergenic 30.0%
GGAATAATATTTGTGAAGGA+AGG + chr7_1:56336293-56336312 None:intergenic 30.0%
TTACCAGAAGAGAAGAAAAA+TGG + chr7_1:56336323-56336342 None:intergenic 30.0%
GTTTCAATGTATACACAACA+AGG - chr7_1:56336541-56336560 Msa1025580:exon 30.0%
TATACACAACAAGGTATGAA+AGG - chr7_1:56336550-56336569 Msa1025580:CDS 30.0%
!!! TTGTTTTTGGTTGGTTTTCT+TGG - chr7_1:56336695-56336714 Msa1025580:CDS 30.0%
CAACCATTTATGATACCTTT+AGG - chr7_1:56336893-56336912 Msa1025580:CDS 30.0%
!! ACTCCTAAAGGTATCATAAA+TGG + chr7_1:56336899-56336918 None:intergenic 30.0%
ATATATTATCAGGACTATGC+TGG - chr7_1:56337099-56337118 Msa1025580:intron 30.0%
! ACTATCTGAAGCAATCAAAA+TGG - chr7_1:56337215-56337234 Msa1025580:intron 30.0%
! TCTGAAATCGTTTGATGAAA+TGG - chr7_1:56337359-56337378 Msa1025580:intron 30.0%
!! AGCTGTAGCTTTAATTAAAC+AGG - chr7_1:56337434-56337453 Msa1025580:CDS 30.0%
CTTACCTTATGTAAGTTACA+CGG + chr7_1:56337467-56337486 None:intergenic 30.0%
!! CAGTTGATAGTTGGAAATTT+GGG - chr7_1:56337632-56337651 Msa1025580:intron 30.0%
AATATCCGGTTTCAAATCAA+CGG + chr7_1:56337717-56337736 None:intergenic 30.0%
CAATACTTACTTGGAATATC+CGG + chr7_1:56337731-56337750 None:intergenic 30.0%
! TTTTAGACAAAAGTCTCCAA+AGG + chr7_1:56337950-56337969 None:intergenic 30.0%
AACAACAAATTCATCTTGCT+TGG + chr7_1:56338019-56338038 None:intergenic 30.0%
!!! GCAAGATGAATTTGTTGTTT+TGG - chr7_1:56338020-56338039 Msa1025580:CDS 30.0%
! TACTTATTGACTATGAAGCA+CGG - chr7_1:56338124-56338143 Msa1025580:CDS 30.0%
TTAAGAAAGAAATCCATGCA+TGG + chr7_1:56338396-56338415 None:intergenic 30.0%
ATCATCAAGAAACAAGCATA+TGG + chr7_1:56338615-56338634 None:intergenic 30.0%
! TTGTGATAAGCTCTAATAAG+TGG - chr7_1:56338886-56338905 Msa1025580:CDS 30.0%
! AATTTAGAACTTATTGGGGT+TGG - chr7_1:56338965-56338984 Msa1025580:CDS 30.0%
TTCCTCAATGTCTTATAAGA+AGG + chr7_1:56339118-56339137 None:intergenic 30.0%
GAAAGAAACATGCAAAGAGT+TGG + chr7_1:56336243-56336262 None:intergenic 35.0%
GAGAAGAAAAATGGATGGAA+TGG + chr7_1:56336314-56336333 None:intergenic 35.0%
CAGAAGAGAAGAAAAATGGA+TGG + chr7_1:56336319-56336338 None:intergenic 35.0%
!! CATCCATTTTTCTTCTCTTC+TGG - chr7_1:56336317-56336336 Msa1025580:three_prime_UTR 35.0%
ATATTCTCCATCATTCACCT+CGG + chr7_1:56336422-56336441 None:intergenic 35.0%
! GTATCAAAATGATGGAGCAA+TGG - chr7_1:56336492-56336511 Msa1025580:three_prime_UTR 35.0%
GAGCAATGGTTAGATTAAGA+GGG - chr7_1:56336506-56336525 Msa1025580:three_prime_UTR 35.0%
ACCAAGATTCAATGACTGTT+TGG - chr7_1:56336578-56336597 Msa1025580:CDS 35.0%
CCAAGATTCAATGACTGTTT+GGG - chr7_1:56336579-56336598 Msa1025580:CDS 35.0%
! CTTCATTGATAGCATTCTCT+TGG - chr7_1:56336932-56336951 Msa1025580:CDS 35.0%
CATGTGGCTATGATTAATGT+TGG - chr7_1:56337069-56337088 Msa1025580:intron 35.0%
ATTGCTTCAGATAGTTTCGA+GGG + chr7_1:56337210-56337229 None:intergenic 35.0%
AATCAAAATGGCACAACAGA+AGG - chr7_1:56337227-56337246 Msa1025580:intron 35.0%
GTGGACATTGTCAAAATTGT+CGG + chr7_1:56337286-56337305 None:intergenic 35.0%
AAATGGATGATCATCTTGCT+CGG - chr7_1:56337376-56337395 Msa1025580:CDS 35.0%
GTAACCGTGTAACTTACATA+AGG - chr7_1:56337460-56337479 Msa1025580:CDS 35.0%
CGTTTACCCTATAAATTGCA+GGG - chr7_1:56337605-56337624 Msa1025580:intron 35.0%
CCAAATTTCCAACTATCAAC+TGG + chr7_1:56337634-56337653 None:intergenic 35.0%
!! CCAGTTGATAGTTGGAAATT+TGG - chr7_1:56337631-56337650 Msa1025580:intron 35.0%
! AAATCAACGGTAAGTTGAAC+AGG + chr7_1:56337704-56337723 None:intergenic 35.0%
!! ACTTACCGTTGATTTGAAAC+CGG - chr7_1:56337709-56337728 Msa1025580:CDS 35.0%
CGGATATTCCAAGTAAGTAT+TGG - chr7_1:56337729-56337748 Msa1025580:CDS 35.0%
TCAAGAATCTTTAGCTGTGA+AGG - chr7_1:56337838-56337857 Msa1025580:intron 35.0%
AATCTTTAGCTGTGAAGGAA+GGG - chr7_1:56337843-56337862 Msa1025580:intron 35.0%
ATCCATATTCTGTACACATC+CGG + chr7_1:56337889-56337908 None:intergenic 35.0%
!!! TTTGTTGTTTTGGCAACTGA+TGG - chr7_1:56338030-56338049 Msa1025580:CDS 35.0%
!!! TTGTTGTTTTGGCAACTGAT+GGG - chr7_1:56338031-56338050 Msa1025580:CDS 35.0%
! TTTAGAGTTTGAACCATGCA+TGG - chr7_1:56338380-56338399 Msa1025580:intron 35.0%
AAGAATGGAAAGCTCTTGAA+GGG - chr7_1:56338768-56338787 Msa1025580:intron 35.0%
CAATCATCTAAGCACCTTAA+TGG - chr7_1:56338851-56338870 Msa1025580:CDS 35.0%
AATGCCTTCAACTTCCATTA+AGG + chr7_1:56338868-56338887 None:intergenic 35.0%
! CATAGCCATTACATCTTTTG+AGG + chr7_1:56339095-56339114 None:intergenic 35.0%
TGCCTTCTTATAAGACATTG+AGG - chr7_1:56339113-56339132 Msa1025580:five_prime_UTR 35.0%
ACGTTGTCTTCCAAGAAACA+TGG - chr7_1:56336342-56336361 Msa1025580:three_prime_UTR 40.0%
CGTTGTCTTCCAAGAAACAT+GGG - chr7_1:56336343-56336362 Msa1025580:three_prime_UTR 40.0%
GCTGTCACGTATCAAAATGA+TGG - chr7_1:56336484-56336503 Msa1025580:three_prime_UTR 40.0%
GGAGCAATGGTTAGATTAAG+AGG - chr7_1:56336505-56336524 Msa1025580:three_prime_UTR 40.0%
CCCAAACAGTCATTGAATCT+TGG + chr7_1:56336582-56336601 None:intergenic 40.0%
AGATTCAATGACTGTTTGGG+AGG - chr7_1:56336582-56336601 Msa1025580:CDS 40.0%
TTGCTGGAATCATACAGCTA+AGG + chr7_1:56336970-56336989 None:intergenic 40.0%
GATTGCTTCAGATAGTTTCG+AGG + chr7_1:56337211-56337230 None:intergenic 40.0%
TGTTGATGCGGTTACTATTG+TGG + chr7_1:56337308-56337327 None:intergenic 40.0%
CAAGGGATATGTTGTTGATG+CGG + chr7_1:56337320-56337339 None:intergenic 40.0%
ACAACATATCCCTTGCTTCA+TGG - chr7_1:56337325-56337344 Msa1025580:intron 40.0%
CAACATATCCCTTGCTTCAT+GGG - chr7_1:56337326-56337345 Msa1025580:intron 40.0%
AATGGATGATCATCTTGCTC+GGG - chr7_1:56337377-56337396 Msa1025580:CDS 40.0%
AACACTGATAGCTATTGCAG+TGG - chr7_1:56337405-56337424 Msa1025580:CDS 40.0%
GCGTTTACCCTATAAATTGC+AGG - chr7_1:56337604-56337623 Msa1025580:intron 40.0%
TGGTCACCCTGCAATTTATA+GGG + chr7_1:56337614-56337633 None:intergenic 40.0%
GAATCTTTAGCTGTGAAGGA+AGG - chr7_1:56337842-56337861 Msa1025580:intron 40.0%
AACCGGATGTGTACAGAATA+TGG - chr7_1:56337884-56337903 Msa1025580:intron 40.0%
TTAGCTATGTCAAGAGCCTT+TGG - chr7_1:56337931-56337950 Msa1025580:intron 40.0%
!!! TGTTGTTTTGGCAACTGATG+GGG - chr7_1:56338032-56338051 Msa1025580:CDS 40.0%
TTGACTATGAAGCACGGATA+CGG - chr7_1:56338130-56338149 Msa1025580:CDS 40.0%
ACTCTGATCCTTTCTTTCTC+CGG - chr7_1:56338335-56338354 Msa1025580:intron 40.0%
TTGTGTATCCGGAGAAAGAA+AGG + chr7_1:56338346-56338365 None:intergenic 40.0%
TGTCTGTTAGCTCACAAAAC+CGG - chr7_1:56338427-56338446 Msa1025580:intron 40.0%
!! TTTGCTGCTGTTGACTTTCT+TGG + chr7_1:56338521-56338540 None:intergenic 40.0%
TCCAGGATACTTATACATCC+AGG + chr7_1:56338570-56338589 None:intergenic 40.0%
! CAATCGTCTATTTTCGATCC+AGG + chr7_1:56338587-56338606 None:intergenic 40.0%
GAAGACAATGAAACTGTTGC+TGG - chr7_1:56338722-56338741 Msa1025580:intron 40.0%
GAAACTGTTGCTGGAAAAGT+TGG - chr7_1:56338731-56338750 Msa1025580:intron 40.0%
GAAGAATGGAAAGCTCTTGA+AGG - chr7_1:56338767-56338786 Msa1025580:intron 40.0%
!! CTCATATTTCTAGCAAGCCT+TGG + chr7_1:56338824-56338843 None:intergenic 40.0%
AGCACCTTAATGGAAGTTGA+AGG - chr7_1:56338861-56338880 Msa1025580:CDS 40.0%
!! ATTGGGGTTGGTGTAAAAAG+TGG - chr7_1:56338977-56338996 Msa1025580:CDS 40.0%
AGGAACATGGAAGAAGTGGT+TGG + chr7_1:56336213-56336232 None:intergenic 45.0%
AGACAGGAACATGGAAGAAG+TGG + chr7_1:56336217-56336236 None:intergenic 45.0%
AGTTGGAAGAGACAGGAACA+TGG + chr7_1:56336226-56336245 None:intergenic 45.0%
TGCAAAGAGTTGGAAGAGAC+AGG + chr7_1:56336233-56336252 None:intergenic 45.0%
TTTGTGAAGGAAGGAAGGGT+GGG + chr7_1:56336284-56336303 None:intergenic 45.0%
ATTTGTGAAGGAAGGAAGGG+TGG + chr7_1:56336285-56336304 None:intergenic 45.0%
TGTCTTCCAAGAAACATGGG+TGG - chr7_1:56336346-56336365 Msa1025580:three_prime_UTR 45.0%
GTTGAAACCGAGGTGAATGA+TGG - chr7_1:56336412-56336431 Msa1025580:three_prime_UTR 45.0%
TGCGAAACTTTGTGTCCTAG+AGG + chr7_1:56337168-56337187 None:intergenic 45.0%
TGATGCGGTTACTATTGTGG+TGG + chr7_1:56337305-56337324 None:intergenic 45.0%
ATATCCCTTGCTTCATGGGA+AGG - chr7_1:56337330-56337349 Msa1025580:intron 45.0%
ACATCCTTCCCATGAAGCAA+GGG + chr7_1:56337337-56337356 None:intergenic 45.0%
AACATCCTTCCCATGAAGCA+AGG + chr7_1:56337338-56337357 None:intergenic 45.0%
! TGTCTCTGTGATTGCTGTTG+AGG + chr7_1:56337553-56337572 None:intergenic 45.0%
CTGGTCACCCTGCAATTTAT+AGG + chr7_1:56337615-56337634 None:intergenic 45.0%
TCGTGCAGTTCTTTGCACAA+GGG - chr7_1:56337661-56337680 Msa1025580:intron 45.0%
AATCCAGGACAGTCATCATC+AGG + chr7_1:56337913-56337932 None:intergenic 45.0%
GCTCTTGACATAGCTAATCC+AGG + chr7_1:56337928-56337947 None:intergenic 45.0%
! ACACATCTGGTGATGCAATG+AGG + chr7_1:56337981-56338000 None:intergenic 45.0%
ACACGACACATGTCTGACAT+GGG - chr7_1:56338254-56338273 Msa1025580:CDS 45.0%
TGTGAGCTAACAGACACTGA+AGG + chr7_1:56338423-56338442 None:intergenic 45.0%
GCCTGGATGTATAAGTATCC+TGG - chr7_1:56338566-56338585 Msa1025580:intron 45.0%
TGTTGCTGGAAAAGTTGGAG+TGG - chr7_1:56338736-56338755 Msa1025580:intron 45.0%
TGGAAAAGTTGGAGTGGAAC+TGG - chr7_1:56338742-56338761 Msa1025580:intron 45.0%
GAGTGGAACTGGATGAAGAA+TGG - chr7_1:56338753-56338772 Msa1025580:intron 45.0%
GGAAGGAAGGGTGGGAATTA+AGG + chr7_1:56336276-56336295 None:intergenic 50.0%
CAACAGCCACCCATGTTTCT+TGG + chr7_1:56336355-56336374 None:intergenic 50.0%
AGCCACGATGTTGCTCTTAG+AGG - chr7_1:56336376-56336395 Msa1025580:three_prime_UTR 50.0%
! CTCCTCTAAGAGCAACATCG+TGG + chr7_1:56336381-56336400 None:intergenic 50.0%
CACGATGTTGCTCTTAGAGG+AGG - chr7_1:56336379-56336398 Msa1025580:three_prime_UTR 50.0%
GATGTTGCTCTTAGAGGAGG+AGG - chr7_1:56336382-56336401 Msa1025580:three_prime_UTR 50.0%
CAGGACTATGCTGGAGAAGA+AGG - chr7_1:56337108-56337127 Msa1025580:intron 50.0%
CTATGCTGGAGAAGAAGGCA+TGG - chr7_1:56337113-56337132 Msa1025580:intron 50.0%
! GAAGAAGGCATGGTCTTCTG+TGG - chr7_1:56337123-56337142 Msa1025580:intron 50.0%
GTCTTCTGTGGCGTGTTTGA+CGG - chr7_1:56337135-56337154 Msa1025580:intron 50.0%
TTTGACGGTCATGGTCCTCT+AGG - chr7_1:56337150-56337169 Msa1025580:intron 50.0%
!! CAGGGTGACCAGTTGATAGT+TGG - chr7_1:56337623-56337642 Msa1025580:intron 50.0%
CTCGTGCAGTTCTTTGCACA+AGG - chr7_1:56337660-56337679 Msa1025580:intron 50.0%
TTTCGCCGCAGATGAAGAAC+CGG - chr7_1:56337867-56337886 Msa1025580:intron 50.0%
CACATCCGGTTCTTCATCTG+CGG + chr7_1:56337875-56337894 None:intergenic 50.0%
! ATGCCTGATGATGACTGTCC+TGG - chr7_1:56337907-56337926 Msa1025580:intron 50.0%
ATGAAGCACGGATACGGACA+CGG - chr7_1:56338136-56338155 Msa1025580:CDS 50.0%
GACACGACACATGTCTGACA+TGG - chr7_1:56338253-56338272 Msa1025580:CDS 50.0%
CACGACACATGTCTGACATG+GGG - chr7_1:56338255-56338274 Msa1025580:CDS 50.0%
GCACAGAGACTCCTGAGATA+AGG + chr7_1:56338286-56338305 None:intergenic 50.0%
TAAAGCGCGCTGTTAAAGCC+TGG - chr7_1:56338549-56338568 Msa1025580:intron 50.0%
GTTGCTCTTAGAGGAGGAGG+AGG - chr7_1:56336385-56336404 Msa1025580:three_prime_UTR 55.0%
AGGAGGCAGAGTTGAAACCG+AGG - chr7_1:56336402-56336421 Msa1025580:three_prime_UTR 55.0%
TGTGGCGTGTTTGACGGTCA+TGG - chr7_1:56337141-56337160 Msa1025580:intron 55.0%
ATGGGGACACGCCTTATCTC+AGG - chr7_1:56338272-56338291 Msa1025580:CDS 55.0%
ACGGATACGGACACGGACAC+CGG - chr7_1:56338143-56338162 Msa1025580:CDS 60.0%
CGGCGTGTCTGTGTCGTGTC+CGG + chr7_1:56338165-56338184 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 56336209 56339215 56336209 ID=Msa1025580;Name=Msa1025580
chr7_1 mRNA 56336209 56339215 56336209 ID=Msa1025580-mRNA-1;Parent=Msa1025580;Name=Msa1025580-mRNA-1;_AED=0.03;_eAED=0.03;_QI=152|1|1|1|1|1|5|335|446
chr7_1 exon 56336209 56336957 56336209 ID=Msa1025580-mRNA-1:exon:11292;Parent=Msa1025580-mRNA-1
chr7_1 exon 56337371 56337594 56337371 ID=Msa1025580-mRNA-1:exon:11291;Parent=Msa1025580-mRNA-1
chr7_1 exon 56337684 56337798 56337684 ID=Msa1025580-mRNA-1:exon:11290;Parent=Msa1025580-mRNA-1
chr7_1 exon 56337969 56338313 56337969 ID=Msa1025580-mRNA-1:exon:11289;Parent=Msa1025580-mRNA-1
chr7_1 exon 56338821 56339215 56338821 ID=Msa1025580-mRNA-1:exon:11288;Parent=Msa1025580-mRNA-1
chr7_1 five_prime_UTR 56339064 56339215 56339064 ID=Msa1025580-mRNA-1:five_prime_utr;Parent=Msa1025580-mRNA-1
chr7_1 CDS 56338821 56339063 56338821 ID=Msa1025580-mRNA-1:cds;Parent=Msa1025580-mRNA-1
chr7_1 CDS 56337969 56338313 56337969 ID=Msa1025580-mRNA-1:cds;Parent=Msa1025580-mRNA-1
chr7_1 CDS 56337684 56337798 56337684 ID=Msa1025580-mRNA-1:cds;Parent=Msa1025580-mRNA-1
chr7_1 CDS 56337371 56337594 56337371 ID=Msa1025580-mRNA-1:cds;Parent=Msa1025580-mRNA-1
chr7_1 CDS 56336544 56336957 56336544 ID=Msa1025580-mRNA-1:cds;Parent=Msa1025580-mRNA-1
chr7_1 three_prime_UTR 56336209 56336543 56336209 ID=Msa1025580-mRNA-1:three_prime_utr;Parent=Msa1025580-mRNA-1
Gene Sequence

>Msa1025580

ATGGGTGGCTGTTGCAGCCACGATGTTGCTCTTAGAGGAGGAGGAGGCAGAGTTGAAACCGAGGTGAATGATGGAGAATATGAATATGATGATAGTGAAGATAATAATATTAATAATAATGATGCTGTCACGTATCAAAATGATGGAGCAATGGTTAGATTAAGAGGGTTTTCTAAGTTTGTTTCAATGTATACACAACAAGGTATGAAAGGTGTTAACCAAGATTCAATGACTGTTTGGGAGGACTATGCTGGAGAAGAAGGCATGGTCTTCTGTGGCGTGTTTGACGGTCATGGTCCTCTAGGACACAAAGTTTCGCAATTTATTCGCGACAATCTACCCTCGAAACTATCTGAAGCAATCAAAATGGCACAACAGAAGGCCAACAAATACTATGATGCTAATGACGCAGATACCGACAATTTTGACAATGTCCACCACAATAGTAACCGCATCAACAACATATCCCTTGCTTCATGGGAAGGATGTTTTCTGAAATCGTTTGATGAAATGGATGATCATCTTGCTCGGGAAGTTAACACTGATAGCTATTGCAGTGGTTGCACAGCTGTAGCTTTAATTAAACAGGGTGACCAGTTGATAGTTGGAAATTTGGGCGATTCTCGTGCAGTTCTTTGCACAAGGGATAGAGATCAACTAATTCCTGTTCAACTTACCGTTGATTTGAAACCGGATATTCCAAGTGAAGCTTCAAGAATCTTTAGCTGTGAAGGAAGGGTTTTCGCCGCAGATGAAGAACCGGATGTGTACAGAATATGGATGCCTGATGATGACTGTCCTGGATTAGCTATGTCAAGAGCCTTTGGAGACTTTTGTCTAAAAGATTATGGCCTCATTGCATCACCAGATGTGTTTTACAGAAAAATTACCAAGCAAGATGAATTTGTTGTTTTGGCAACTGATGGGATATGGGATGTTCTGACAAACAATGAAGTAATAAACATAGTTGCTTCAGCGCCAAGAAAGTCAACAGCAGCAAAGATGTTAGTAAAGCGCGCTGTTAAAGCCTGGATGTATAAGTATCCTGGATCGAAAATAGACGATTGTGCAGCCATATGCTTGTTTCTTGATGATCAACCTATTTTATCACATTCTCAATCGAGTTTCAAGCACTCTAAAAGTCGACATCGTCGCAGTAAGCACTCTAAATCACATCGAAACGAAGACAATGAAACTGTTGCTGGAAAAGTTGGAGTGGAACTGGATGAAGAATGGAAAGCTCTTGAAGGGTTAGCTAGAGCAAATTCAATATCAAAACTTCCAAGGCTTGCTAGAAATATGAGTAAAAGACAATCATCTAAGCACCTTAATGGAAGTTGA
Protein sequence

>Msa1025580

MGGCCSHDVALRGGGGRVETEVNDGEYEYDDSEDNNINNNDAVTYQNDGAMVRLRGFSKFVSMYTQQGMKGVNQDSMTVWEDYAGEEGMVFCGVFDGHGPLGHKVSQFIRDNLPSKLSEAIKMAQQKANKYYDANDADTDNFDNVHHNSNRINNISLASWEGCFLKSFDEMDDHLAREVNTDSYCSGCTAVALIKQGDQLIVGNLGDSRAVLCTRDRDQLIPVQLTVDLKPDIPSEASRIFSCEGRVFAADEEPDVYRIWMPDDDCPGLAMSRAFGDFCLKDYGLIASPDVFYRKITKQDEFVVLATDGIWDVLTNNEVINIVASAPRKSTAAKMLVKRAVKAWMYKYPGSKIDDCAAICLFLDDQPILSHSQSSFKHSKSRHRRSKHSKSHRNEDNETVAGKVGVELDEEWKALEGLARANSISKLPRLARNMSKRQSSKHLNGS*