AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1064390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1064390 MtrunA17_Chr7g0243571 95.312 448 18 2 1 446 1 447 0.0 855
Msa1064390 MtrunA17_Chr4g0004971 57.568 370 133 6 1 368 1 348 9.57e-148 424
Msa1064390 MtrunA17_Chr7g0221691 46.556 421 202 8 1 411 42 449 4.22e-120 358
Msa1064390 MtrunA17_Chr7g0249421 45.921 429 183 8 52 431 57 485 2.26e-119 357
Msa1064390 MtrunA17_Chr4g0022171 43.341 413 195 9 56 435 62 468 9.94e-115 345
Msa1064390 MtrunA17_Chr2g0324061 44.203 414 188 8 56 431 56 464 4.64e-110 333
Msa1064390 MtrunA17_Chr7g0272061 45.231 325 171 3 52 374 52 371 2.32e-99 302
Msa1064390 MtrunA17_Chr1g0192421 44.025 318 165 3 47 363 45 350 6.89e-99 300
Msa1064390 MtrunA17_Chr4g0067711 46.302 311 150 4 60 367 60 356 7.98e-98 297
Msa1064390 MtrunA17_Chr2g0295401 46.774 310 150 5 60 367 61 357 1.13e-95 292
Msa1064390 MtrunA17_Chr8g0342431 46.532 346 131 6 52 363 47 372 1.18e-92 286
Msa1064390 MtrunA17_Chr1g0151781 44.984 309 157 3 59 367 37 332 2.72e-89 275
Msa1064390 MtrunA17_Chr4g0066371 27.796 313 162 6 60 344 47 323 2.10e-32 127
Msa1064390 MtrunA17_Chr6g0486661 27.893 337 178 13 64 374 97 394 7.45e-27 114
Msa1064390 MtrunA17_Chr2g0286951 26.603 312 172 5 57 345 48 325 8.67e-27 111
Msa1064390 MtrunA17_Chr3g0136711 29.474 285 143 8 91 374 65 292 3.99e-25 104
Msa1064390 MtrunA17_Chr5g0396731 31.481 270 137 8 60 325 75 300 4.55e-25 105
Msa1064390 MtrunA17_Chr3g0135961 31.469 286 139 13 71 353 269 500 7.35e-24 104
Msa1064390 MtrunA17_Chr1g0150451 29.091 275 138 7 93 366 110 328 8.65e-24 101
Msa1064390 MtrunA17_Chr1g0150781 31.636 275 130 11 91 342 290 529 8.95e-23 100
Msa1064390 MtrunA17_Chr3g0112291 30.952 252 136 9 74 323 106 321 9.34e-23 99.8
Msa1064390 MtrunA17_Chr4g0070871 34.483 232 113 9 91 322 253 445 3.02e-21 96.3
Msa1064390 MtrunA17_Chr1g0212961 27.857 280 137 11 91 368 126 342 9.09e-21 93.2
Msa1064390 MtrunA17_Chr8g0389921 31.897 232 109 9 91 319 198 383 5.73e-20 92.0
Msa1064390 MtrunA17_Chr2g0299981 31.004 229 138 9 91 318 267 476 2.58e-19 90.5
Msa1064390 MtrunA17_Chr5g0435721 28.517 263 126 7 74 323 206 419 1.75e-18 87.8
Msa1064390 MtrunA17_Chr2g0293811 27.508 309 153 11 61 342 53 317 2.02e-18 86.7
Msa1064390 MtrunA17_Chr4g0051661 38.272 162 84 6 180 340 235 381 5.74e-18 85.5
Msa1064390 MtrunA17_Chr6g0483411 28.241 216 120 6 164 363 122 318 4.56e-17 82.0
Msa1064390 MtrunA17_Chr1g0194191 28.244 262 134 9 91 342 118 335 4.92e-17 82.8
Msa1064390 MtrunA17_Chr2g0317021 37.821 156 81 6 187 341 177 317 1.25e-16 80.9
Msa1064390 MtrunA17_Chr3g0105351 26.087 322 176 11 1 322 15 274 1.65e-16 80.1
Msa1064390 MtrunA17_Chr8g0360351 28.475 295 151 12 55 341 24 266 3.12e-16 79.0
Msa1064390 MtrunA17_Chr3g0105371 28.736 261 135 10 62 322 89 298 3.26e-16 79.7
Msa1064390 MtrunA17_Chr5g0430481 27.586 261 138 9 62 322 125 334 5.05e-16 79.3
Msa1064390 MtrunA17_Chr3g0115851 37.580 157 82 6 187 342 126 267 5.98e-16 78.2
Msa1064390 MtrunA17_Chr1g0171571 25.581 301 176 10 64 363 391 644 6.81e-16 80.1
Msa1064390 MtrunA17_Chr4g0050381 35.897 156 84 6 187 341 121 261 1.02e-15 77.4
Msa1064390 MtrunA17_Chr7g0256751 25.464 377 200 15 57 391 40 377 2.14e-15 77.8
Msa1064390 MtrunA17_Chr1g0158781 30.901 233 114 9 91 323 145 330 5.98e-15 76.3
Msa1064390 MtrunA17_Chr2g0279151 34.395 157 87 6 187 342 125 266 9.86e-15 74.3
Msa1064390 MtrunA17_Chr3g0136811 24.768 323 191 10 45 341 13 309 1.40e-14 75.1
Msa1064390 MtrunA17_Chr5g0426141 36.306 157 84 6 187 342 126 267 2.52e-14 73.2
Msa1064390 MtrunA17_Chr5g0407161 26.937 271 116 8 91 342 124 331 4.27e-14 73.6
Msa1064390 MtrunA17_Chr3g0126511 25.974 231 119 7 93 322 127 306 6.60e-14 72.8
Msa1064390 MtrunA17_Chr3g0138281 25.784 287 145 10 91 367 121 349 3.69e-13 70.9
Msa1064390 MtrunA17_Chr7g0238501 24.026 308 169 11 63 341 239 510 9.57e-13 70.1
Msa1064390 MtrunA17_Chr4g0001761 27.863 262 144 10 86 323 47 287 3.47e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1064390 AT5G01700.2 50.670 373 146 4 1 367 1 341 2.34e-130 382
Msa1064390 AT5G01700.1 53.443 305 129 1 63 367 1 292 5.07e-121 356
Msa1064390 AT1G16220.1 44.019 418 191 6 56 430 60 477 5.62e-120 359
Msa1064390 AT1G79630.1 42.991 428 191 6 56 430 63 490 5.92e-120 359
Msa1064390 AT1G79630.8 42.991 428 191 6 56 430 59 486 6.87e-120 359
Msa1064390 AT5G36250.1 48.611 360 167 7 38 383 46 401 7.23e-117 350
Msa1064390 AT1G03590.1 44.527 402 194 6 56 430 56 455 6.60e-114 342
Msa1064390 AT5G36250.2 46.791 374 167 8 38 383 46 415 8.12e-113 340
Msa1064390 AT4G03415.1 45.274 402 188 8 63 436 70 467 3.90e-112 338
Msa1064390 AT4G03415.3 45.274 402 188 8 63 436 70 467 3.90e-112 338
Msa1064390 AT4G03415.2 45.274 402 188 8 63 436 70 467 3.90e-112 338
Msa1064390 AT3G02750.2 44.573 433 182 7 54 430 58 488 5.55e-112 338
Msa1064390 AT3G02750.1 44.573 433 182 7 54 430 58 488 5.55e-112 338
Msa1064390 AT1G79630.2 41.935 403 181 6 81 430 18 420 1.58e-108 328
Msa1064390 AT1G79630.7 41.935 403 181 6 81 430 18 420 1.58e-108 328
Msa1064390 AT3G02750.3 41.090 477 187 9 46 431 51 524 2.92e-104 320
Msa1064390 AT1G79630.6 49.315 292 123 4 164 430 89 380 1.24e-96 296
Msa1064390 AT1G79630.3 49.315 292 123 4 164 430 89 380 1.24e-96 296
Msa1064390 AT1G79630.4 49.315 292 123 4 164 430 89 380 1.24e-96 296
Msa1064390 AT1G79630.5 49.315 292 123 4 164 430 89 380 1.24e-96 296
Msa1064390 AT3G05640.2 44.660 309 153 3 56 363 58 349 4.41e-94 288
Msa1064390 AT3G05640.1 44.660 309 153 3 56 363 58 349 4.41e-94 288
Msa1064390 AT3G05640.3 44.660 309 153 3 56 363 58 349 4.41e-94 288
Msa1064390 AT5G27930.1 43.450 313 163 4 52 362 53 353 1.19e-92 285
Msa1064390 AT5G27930.2 43.450 313 163 4 52 362 53 353 1.19e-92 285
Msa1064390 AT3G16800.2 41.311 351 181 5 16 363 20 348 9.54e-89 274
Msa1064390 AT3G16800.1 41.311 351 181 5 16 363 20 348 9.54e-89 274
Msa1064390 AT3G16800.3 41.311 351 181 5 16 363 20 348 9.54e-89 274
Msa1064390 AT5G36250.3 47.241 290 138 6 38 313 46 334 3.29e-87 270
Msa1064390 AT3G16800.4 44.322 273 129 4 94 363 1 253 1.37e-74 234
Msa1064390 AT3G16800.6 44.322 273 129 4 94 363 1 253 1.37e-74 234
Msa1064390 AT5G27930.3 40.909 264 136 3 52 310 53 301 1.03e-72 232
Msa1064390 AT5G26010.1 40.708 339 173 6 33 367 16 330 3.66e-72 231
Msa1064390 AT4G32950.1 41.368 307 147 5 62 366 44 319 3.96e-71 228
Msa1064390 AT4G32950.2 41.833 251 113 5 62 310 44 263 3.65e-53 180
Msa1064390 AT3G16800.5 34.498 229 125 5 16 241 20 226 1.43e-35 132
Msa1064390 AT3G06270.1 27.986 293 155 6 73 345 70 326 1.47e-30 121
Msa1064390 AT2G20050.2 27.160 324 172 10 64 364 116 398 8.83e-29 120
Msa1064390 AT2G20050.1 27.160 324 172 10 64 364 116 398 9.52e-29 120
Msa1064390 AT4G31750.2 27.719 285 146 9 85 366 56 283 1.71e-23 100
Msa1064390 AT4G31750.1 27.719 285 146 9 85 366 56 283 2.32e-23 100
Msa1064390 AT4G31750.3 27.719 285 146 9 85 366 56 283 2.32e-23 100
Msa1064390 AT5G24940.1 30.159 252 126 6 91 342 64 265 2.06e-22 99.8
Msa1064390 AT1G72770.4 32.780 241 121 8 91 322 238 446 3.97e-22 99.4
Msa1064390 AT1G72770.1 32.780 241 121 8 91 322 238 446 3.97e-22 99.4
Msa1064390 AT1G72770.3 32.780 241 121 8 91 322 238 446 3.97e-22 99.4
Msa1064390 AT5G10740.1 30.435 253 124 7 91 342 64 265 8.23e-22 96.7
Msa1064390 AT5G10740.2 30.435 253 124 7 91 342 64 265 8.23e-22 96.7
Msa1064390 AT1G07430.1 37.288 177 83 5 160 323 193 354 1.87e-20 93.6
Msa1064390 AT5G59220.1 31.452 248 108 9 88 323 145 342 1.29e-19 90.9
Msa1064390 AT5G57050.2 31.034 232 120 7 91 322 120 311 2.39e-19 89.7
Msa1064390 AT5G57050.1 31.466 232 119 7 91 322 160 351 2.41e-19 90.1
Msa1064390 AT1G17550.1 29.752 242 120 8 91 318 237 442 3.89e-19 90.1
Msa1064390 AT1G17550.2 29.752 242 120 8 91 318 237 442 3.89e-19 90.1
Msa1064390 AT4G26080.1 32.895 228 111 9 91 318 172 357 9.58e-19 88.6
Msa1064390 AT1G43900.1 31.076 251 120 9 89 338 152 350 1.72e-18 87.0
Msa1064390 AT1G67820.2 26.332 319 179 9 63 380 87 350 3.76e-18 86.7
Msa1064390 AT2G34740.1 32.663 199 111 8 166 363 159 335 3.87e-18 85.9
Msa1064390 AT1G67820.1 26.019 319 180 9 63 380 123 386 4.53e-18 86.7
Msa1064390 AT3G11410.1 35.326 184 83 6 160 322 173 341 1.16e-17 85.1
Msa1064390 AT5G51760.2 33.668 199 105 6 153 339 155 338 1.66e-17 84.3
Msa1064390 AT5G02760.1 26.074 326 159 12 91 375 72 356 1.69e-17 84.3
Msa1064390 AT5G51760.1 33.168 202 108 6 153 342 185 371 2.09e-17 84.3
Msa1064390 AT4G28400.3 36.538 156 83 6 187 341 105 245 2.24e-17 82.0
Msa1064390 AT4G28400.1 36.538 156 83 6 187 341 127 267 4.04e-17 82.0
Msa1064390 AT1G78200.5 33.146 178 105 5 166 342 59 223 7.38e-17 80.1
Msa1064390 AT1G78200.4 33.146 178 105 5 166 342 59 223 7.38e-17 80.1
Msa1064390 AT2G40180.1 28.179 291 154 10 60 342 128 371 7.59e-17 82.4
Msa1064390 AT3G17250.1 27.559 254 124 8 89 329 156 362 8.36e-17 82.4
Msa1064390 AT2G29380.1 35.165 182 77 9 160 322 150 309 8.83e-17 82.0
Msa1064390 AT1G78200.1 33.146 178 105 5 166 342 104 268 9.03e-17 80.9
Msa1064390 AT1G78200.3 33.146 178 105 5 166 342 104 268 9.03e-17 80.9
Msa1064390 AT1G78200.2 33.146 178 105 5 166 342 104 268 9.03e-17 80.9
Msa1064390 AT5G53140.1 27.626 257 132 9 87 340 126 331 1.58e-16 81.6
Msa1064390 AT5G53140.2 27.626 257 132 9 87 340 126 331 1.58e-16 81.6
Msa1064390 AT2G25620.1 27.063 303 155 11 75 367 114 360 2.85e-16 80.9
Msa1064390 AT2G25620.2 27.063 303 155 11 75 367 114 360 2.85e-16 80.9
Msa1064390 AT2G20630.1 28.516 256 117 10 94 341 66 263 3.18e-16 79.3
Msa1064390 AT1G07160.1 28.352 261 138 9 62 322 124 335 4.08e-16 80.1
Msa1064390 AT3G62260.3 28.571 238 123 8 91 323 27 222 4.63e-16 79.0
Msa1064390 AT2G20630.2 28.516 256 117 10 94 341 66 263 5.89e-16 78.6
Msa1064390 AT3G62260.2 28.571 238 123 8 91 323 117 312 1.03e-15 79.0
Msa1064390 AT3G62260.1 28.571 238 123 8 91 323 116 311 1.10e-15 79.0
Msa1064390 AT1G18030.1 27.650 217 122 5 163 363 151 348 2.73e-15 77.4
Msa1064390 AT1G48040.1 28.862 246 125 8 91 329 116 318 8.25e-15 76.3
Msa1064390 AT1G34750.2 36.709 158 82 6 187 342 126 267 1.86e-14 73.9
Msa1064390 AT1G34750.1 36.709 158 82 6 187 342 126 267 1.86e-14 73.9
Msa1064390 AT1G34750.3 36.709 158 82 6 187 342 126 267 1.86e-14 73.9
Msa1064390 AT2G30020.1 27.203 261 141 10 62 322 141 352 1.91e-14 75.1
Msa1064390 AT2G40860.4 30.102 196 115 8 170 363 375 550 2.94e-14 75.5
Msa1064390 AT2G40860.2 32.258 155 91 5 170 323 473 614 4.70e-14 74.7
Msa1064390 AT2G40860.1 32.258 155 91 5 170 323 473 614 6.17e-14 74.3
Msa1064390 AT2G34740.2 31.953 169 98 7 166 333 173 325 2.14e-13 71.2
Msa1064390 AT2G34740.3 31.953 169 98 7 166 333 155 307 2.56e-13 70.9
Msa1064390 AT3G15260.2 35.256 156 85 6 187 341 133 273 3.65e-13 70.1
Msa1064390 AT3G15260.1 35.256 156 85 6 187 341 133 273 3.65e-13 70.1
Msa1064390 AT4G31860.3 32.192 146 74 4 186 323 159 287 6.71e-13 69.7
Msa1064390 AT4G31860.1 29.268 164 91 4 186 341 159 305 9.09e-13 69.7
Msa1064390 AT1G22280.1 35.669 157 85 6 187 342 125 266 9.29e-13 68.9
Msa1064390 AT1G22280.3 35.669 157 85 6 187 342 131 272 1.01e-12 68.9
Msa1064390 AT3G51470.1 24.627 268 141 10 64 323 76 290 4.88e-12 67.8
Msa1064390 AT3G51470.2 24.627 268 141 10 64 323 32 246 7.90e-12 66.6
Msa1064390 AT1G18030.2 28.221 163 92 3 163 313 151 300 8.22e-12 66.2
Msa1064390 AT2G25070.1 30.909 165 87 6 186 341 159 305 9.64e-12 66.6
Msa1064390 AT2G25070.2 30.909 165 87 6 186 341 159 305 9.64e-12 66.6
Msa1064390 AT1G34750.4 37.681 138 66 7 187 322 126 245 4.29e-11 63.5

Find 111 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGCAATGGTTAGATTAAA+AGG 0.165667 7_2:-56919798 Msa1064390:CDS
ACCTAAAATGTTGTATATTT+AGG 0.180151 7_2:-56917386 Msa1064390:three_prime_UTR
TTTGCTGCTGTTGACTTTCT+TGG 0.181729 7_2:+56917789 None:intergenic
CCAGTTGATAGTTGGAAATT+TGG 0.206532 7_2:-56918676 Msa1064390:CDS
TTGAAGAATTTAGAACTTAT+TGG 0.221539 7_2:-56917348 Msa1064390:three_prime_UTR
GCAAGATGAATTTGTTGTTT+TGG 0.234194 7_2:-56918287 Msa1064390:CDS
CAATCATCTAAGCACCTTAA+TGG 0.234478 7_2:-56917456 Msa1064390:CDS
CAACAGCCACCCATGTTTCT+TGG 0.244069 7_2:+56919951 None:intergenic
GGAAGGAAGGGTGGGAATTA+AGG 0.256545 7_2:+56920037 None:intergenic
TGAAGAATTTAGAACTTATT+GGG 0.257624 7_2:-56917347 Msa1064390:three_prime_UTR
AATGCCTTCAACTTCCATTA+AGG 0.307538 7_2:+56917442 None:intergenic
GCTATTGATAACATTGATAA+TGG 0.318337 7_2:+56917148 None:intergenic
ACCAAGATTCAATGACTGTT+TGG 0.326044 7_2:-56919725 Msa1064390:CDS
CAGTTGATAGTTGGAAATTT+GGG 0.326425 7_2:-56918675 Msa1064390:CDS
AACCGGATGTATACAGAATA+TGG 0.329139 7_2:-56918423 Msa1064390:CDS
ACTATCTGAAGCAATCAAAA+TGG 0.340437 7_2:-56919092 Msa1064390:CDS
TCTGAAATCGTTTGATGAAA+TGG 0.343971 7_2:-56918948 Msa1064390:CDS
CCAAGATTCAATGACTGTTT+GGG 0.365877 7_2:-56919724 Msa1064390:CDS
GATTGAGAATGTGATAAAAT+AGG 0.372960 7_2:+56917669 None:intergenic
CTAGCTATGTCAAGAGCCTT+TGG 0.377892 7_2:-56918376 Msa1064390:CDS
AGCTGTAGCTTTAATTAAAC+AGG 0.381379 7_2:-56918873 Msa1064390:intron
ACAACATATCCCTTGCTTCA+TGG 0.386921 7_2:-56918982 Msa1064390:CDS
CCCAAACAGTCATTGAATCT+TGG 0.388360 7_2:+56919724 None:intergenic
CAATACTTACTTGGAATATC+CGG 0.392328 7_2:+56918579 None:intergenic
AGCCACGATGTTGCTCTTAG+AGG 0.393147 7_2:-56919927 Msa1064390:CDS
AAATCAACGGTAAGTTGAAC+AGG 0.405496 7_2:+56918606 None:intergenic
GGTAAATAATTAGTTAATGA+TGG 0.415860 7_2:+56917169 None:intergenic
GTCTTCTGTGGCGTGTTTGA+CGG 0.416167 7_2:-56919172 Msa1064390:CDS
CTCATATTTCTAGCAAGCCT+TGG 0.424591 7_2:+56917486 None:intergenic
AACAACAAATTCATCTTGCT+TGG 0.431974 7_2:+56918291 None:intergenic
GAGCAATGGTTAGATTAAAA+GGG 0.432731 7_2:-56919797 Msa1064390:CDS
GAAGACAATGAAACTGTTGC+TGG 0.432915 7_2:-56917585 Msa1064390:CDS
ACTTACCGTTGATTTGAAAC+CGG 0.436160 7_2:-56918598 Msa1064390:CDS
ATTAGCATCATAGTATTTGT+TGG 0.436523 7_2:+56919057 None:intergenic
CAACATATCCCTTGCTTCAT+GGG 0.437188 7_2:-56918981 Msa1064390:CDS
CAGGGTGACCAGTTGATAGT+TGG 0.439596 7_2:-56918684 Msa1064390:CDS
AATTTAGAACTTATTGGGGT+TGG 0.445541 7_2:-56917342 Msa1064390:three_prime_UTR
CAGGACTATGCTGGAGAAGA+AGG 0.456514 7_2:-56919199 Msa1064390:CDS
CCAAATTTCCAACTATCAAC+TGG 0.463615 7_2:+56918676 None:intergenic
GAAACTGTTGCTGGAAAAGT+TGG 0.469501 7_2:-56917576 Msa1064390:CDS
ATCATCAAGAAACAAGCATA+TGG 0.471604 7_2:+56917695 None:intergenic
GCCTGGATGTATAAGTATCC+TGG 0.473714 7_2:-56917741 Msa1064390:CDS
TTTCGCTGCAGACGAAGAAC+CGG 0.478382 7_2:-56918440 Msa1064390:CDS
GAAGAATGGAAAGCTCTTGA+AGG 0.479840 7_2:-56917540 Msa1064390:CDS
GAATCTTTAGCTGTGAAGGA+AGG 0.481881 7_2:-56918465 Msa1064390:CDS
TTATACCTCAAAAGATGTAA+TGG 0.487329 7_2:-56917220 Msa1064390:three_prime_UTR
CTCGTGCAGTTCTTTGCACA+AGG 0.487423 7_2:-56918647 Msa1064390:CDS
ATCCATATTCTGTATACATC+CGG 0.490554 7_2:+56918421 None:intergenic
TGCAAAGAGTTGGCAGAGAC+AGG 0.493057 7_2:+56920080 None:intergenic
TATTGTGAAGGAAGGAAGGG+TGG 0.496139 7_2:+56920028 None:intergenic
ATGCCTGATGATGACTGTCC+TGG 0.497294 7_2:-56918400 Msa1064390:CDS
AGTCCAGGACAGTCATCATC+AGG 0.497520 7_2:+56918397 None:intergenic
TTATCTGCTATATAGAATGA+TGG 0.500312 7_2:-56917113 None:intergenic
TGGAAAAGTTGGAGTGGAAC+TGG 0.501997 7_2:-56917565 Msa1064390:CDS
TCAAGAATCTTTAGCTGTGA+AGG 0.508129 7_2:-56918469 Msa1064390:CDS
TGTGGCGTGTTTGACGGTCA+TGG 0.512054 7_2:-56919166 Msa1064390:CDS
TTCCTCAATGTCTTATAAGA+AGG 0.512189 7_2:+56917192 None:intergenic
AAAATTTAAATTTAATGATG+AGG 0.514871 7_2:-56917302 Msa1064390:three_prime_UTR
GTTGAAACCGAGGTGAATGA+TGG 0.518422 7_2:-56919891 Msa1064390:CDS
AAATGGATGATCATCTTGCT+CGG 0.523245 7_2:-56918931 Msa1064390:CDS
ATTGTGAAGGAAGGAAGGGT+GGG 0.524054 7_2:+56920029 None:intergenic
ATATATTATCAGGACTATGC+TGG 0.527095 7_2:-56919208 Msa1064390:intron
TAAAGCGCGCTGTTAAAGCC+TGG 0.527207 7_2:-56917758 Msa1064390:CDS
TTTGACGGTCATGGTCCTCT+AGG 0.530863 7_2:-56919157 Msa1064390:CDS
GAAGAATTTAGAACTTATTG+GGG 0.536412 7_2:-56917346 Msa1064390:three_prime_UTR
AGCACCTTAATGGAAGTTGA+AGG 0.541332 7_2:-56917446 Msa1064390:exon
ATTCAATATCAAAACTTCCA+AGG 0.542466 7_2:-56917503 Msa1064390:CDS
AACATCCTTCCCATGAAGCA+AGG 0.545861 7_2:+56918972 None:intergenic
AATCTTTAGCTGTGAAGGAA+GGG 0.549092 7_2:-56918464 Msa1064390:CDS
GATTGCTTCAGATAGTTTCG+AGG 0.550025 7_2:+56919099 None:intergenic
GAAAGAAACATGCAAAGAGT+TGG 0.550967 7_2:+56920070 None:intergenic
TGTTGATGCGGTTACTATTG+TGG 0.552058 7_2:+56919002 None:intergenic
ATATCCCTTGCTTCATGGGA+AGG 0.553019 7_2:-56918977 Msa1064390:CDS
GAGTGGAACTGGATGAAGAA+TGG 0.555708 7_2:-56917554 Msa1064390:CDS
TGCCTTCTTATAAGACATTG+AGG 0.556688 7_2:-56917194 Msa1064390:three_prime_UTR
GTGGACATTGTCAAAATTGT+CGG 0.556822 7_2:+56919024 None:intergenic
GTTGCTCTTAGAGGAGGAGG+AGG 0.558281 7_2:-56919918 Msa1064390:CDS
TCCAGGATACTTATACATCC+AGG 0.559238 7_2:+56917740 None:intergenic
AATGGATGATCATCTTGCTC+GGG 0.566783 7_2:-56918930 Msa1064390:CDS
ACGTTGTCTTCCAAGAAACA+TGG 0.567860 7_2:-56919961 Msa1064390:exon
TATACACAACAAGGTATGAA+AGG 0.568417 7_2:-56919753 Msa1064390:CDS
AATATCCGGTTTCAAATCAA+CGG 0.569234 7_2:+56918593 None:intergenic
GCTCTTGACATAGCTAGTCC+AGG 0.570855 7_2:+56918382 None:intergenic
AATCAAAATGGCACAACAGA+AGG 0.572079 7_2:-56919080 Msa1064390:CDS
AGACAGGAACATGGAAGAAG+TGG 0.578180 7_2:+56920096 None:intergenic
TTGTGATAAGCTCTAATAAG+TGG 0.579319 7_2:-56917421 Msa1064390:three_prime_UTR
GCTGTCACGTATCAAAATGA+TGG 0.579947 7_2:-56919819 Msa1064390:CDS
AGTTGGCAGAGACAGGAACA+TGG 0.580347 7_2:+56920087 None:intergenic
AAGAATGGAAAGCTCTTGAA+GGG 0.594451 7_2:-56917539 Msa1064390:CDS
AGGAGGCAGAGTTGAAACCG+AGG 0.596046 7_2:-56919901 Msa1064390:CDS
GTATCAAAATGATGGAGCAA+TGG 0.597945 7_2:-56919811 Msa1064390:CDS
GATGTTGCTCTTAGAGGAGG+AGG 0.599534 7_2:-56919921 Msa1064390:CDS
CACGATGTTGCTCTTAGAGG+AGG 0.613102 7_2:-56919924 Msa1064390:CDS
ACATCCTTCCCATGAAGCAA+GGG 0.615226 7_2:+56918973 None:intergenic
ATTGCTTCAGATAGTTTCGA+GGG 0.615251 7_2:+56919100 None:intergenic
CAAGGGATATGTTGTTGATG+CGG 0.616397 7_2:+56918990 None:intergenic
CTATGCTGGAGAAGAAGGCA+TGG 0.621989 7_2:-56919194 Msa1064390:CDS
AACACTGATAGCTATTGCAG+TGG 0.622757 7_2:-56918902 Msa1064390:CDS
CGTTGTCTTCCAAGAAACAT+GGG 0.631651 7_2:-56919960 Msa1064390:exon
TCGTGCAGTTCTTTGCACAA+GGG 0.632091 7_2:-56918646 Msa1064390:CDS
AGATTCAATGACTGTTTGGG+AGG 0.633406 7_2:-56919721 Msa1064390:intron
ATATTCTCCATCATTCACCT+CGG 0.635736 7_2:+56919884 None:intergenic
ACACATCTGGTGATGCAATG+AGG 0.636186 7_2:+56918329 None:intergenic
GAAGAAGGCATGGTCTTCTG+TGG 0.636280 7_2:-56919184 Msa1064390:CDS
TGCGAAACTTTGTGTCCTAG+AGG 0.636288 7_2:+56919142 None:intergenic
GTTTCAATGTATACACAACA+AGG 0.640908 7_2:-56919762 Msa1064390:CDS
AGGAACATGGAAGAAGTGGT+TGG 0.642642 7_2:+56920100 None:intergenic
TGATGCGGTTACTATTGTGG+TGG 0.653844 7_2:+56919005 None:intergenic
TGTTGCTGGAAAAGTTGGAG+TGG 0.662878 7_2:-56917571 Msa1064390:CDS
CTCCTCTAAGAGCAACATCG+TGG 0.712569 7_2:+56919925 None:intergenic
TGTCTTCCAAGAAACATGGG+TGG 0.731949 7_2:-56919957 Msa1064390:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTTAAATTTAATGATG+AGG - chr7_2:56919913-56919932 Msa1064390:CDS 10.0%
!!! TTTTGATGAATTTTTGTTTT+TGG - chr7_2:56917594-56917613 Msa1064390:CDS 15.0%
!! AATGATTAATCAAATTGAAA+TGG + chr7_2:56917690-56917709 None:intergenic 15.0%
!! AATTATGTGATTTAATCTTA+TGG - chr7_2:56917907-56917926 Msa1064390:intron 15.0%
!!! AATATTTTTATTGTGAAGGA+AGG + chr7_2:56917198-56917217 None:intergenic 20.0%
!!! ATGGAATATTTTTATTGTGA+AGG + chr7_2:56917202-56917221 None:intergenic 20.0%
!!! TTTTTTTCAATCAATTCTTG+TGG - chr7_2:56917630-56917649 Msa1064390:CDS 20.0%
!!! TTTTTTCAATCAATTCTTGT+GGG - chr7_2:56917631-56917650 Msa1064390:CDS 20.0%
!! AATCTTGACAATTACATTAT+TGG + chr7_2:56917764-56917783 None:intergenic 20.0%
!! TGGACTTTATTATTAGATTA+TGG - chr7_2:56917927-56917946 Msa1064390:intron 20.0%
!! AAATTACAATTAGATCTGAT+AGG + chr7_2:56918702-56918721 None:intergenic 20.0%
!!! TAATTTTATCAACGTTTTTC+AGG - chr7_2:56918716-56918735 Msa1064390:intron 20.0%
!! ACCTTAGAATTAAAAATCAA+GGG + chr7_2:56918995-56919014 None:intergenic 20.0%
!! AACCTTAGAATTAAAAATCA+AGG + chr7_2:56918996-56919015 None:intergenic 20.0%
!!! TGTCATTTTTTTAACAGATA+TGG - chr7_2:56919358-56919377 Msa1064390:intron 20.0%
!!! GTCATTTTTTTAACAGATAT+GGG - chr7_2:56919359-56919378 Msa1064390:intron 20.0%
!! ACCTAAAATGTTGTATATTT+AGG - chr7_2:56919829-56919848 Msa1064390:CDS 20.0%
!!! ACCTAAATATACAACATTTT+AGG + chr7_2:56919833-56919852 None:intergenic 20.0%
!!! TTGAAGAATTTAGAACTTAT+TGG - chr7_2:56919867-56919886 Msa1064390:CDS 20.0%
!!! TGAAGAATTTAGAACTTATT+GGG - chr7_2:56919868-56919887 Msa1064390:CDS 20.0%
!!! AGTTTTTCACTCAAATATTT+AGG - chr7_2:56919955-56919974 Msa1064390:exon 20.0%
!!! GTTTTTCACTCAAATATTTA+GGG - chr7_2:56919956-56919975 Msa1064390:exon 20.0%
!!! TTTTTCACTCAAATATTTAG+GGG - chr7_2:56919957-56919976 Msa1064390:exon 20.0%
!! GGTAAATAATTAGTTAATGA+TGG + chr7_2:56920049-56920068 None:intergenic 20.0%
!!! GATGAATTTTTGTTTTTGGT+TGG - chr7_2:56917598-56917617 Msa1064390:CDS 25.0%
!!! ATTTTAGTAGTAACTCCTAA+AGG + chr7_2:56917819-56917838 None:intergenic 25.0%
! CATAATTCTATGATTATTGC+TGG + chr7_2:56917894-56917913 None:intergenic 25.0%
! AATTGATGAAATGTAACATG+TGG - chr7_2:56917961-56917980 Msa1064390:intron 25.0%
! TGGATATGCTATATATTATC+AGG - chr7_2:56917997-56918016 Msa1064390:intron 25.0%
! ATTAGCATCATAGTATTTGT+TGG + chr7_2:56918161-56918180 None:intergenic 25.0%
! TTACATAAGGTAAGAAATCA+TGG - chr7_2:56918381-56918400 Msa1064390:CDS 25.0%
! TTGATATACCAATACTTACT+TGG + chr7_2:56918648-56918667 None:intergenic 25.0%
!! GACTTTTGTCTAAAAGATTA+TGG - chr7_2:56918863-56918882 Msa1064390:intron 25.0%
!! ATTTTTCTGTAAAACACATC+TGG + chr7_2:56918902-56918921 None:intergenic 25.0%
!!! ACCCTTGATTTTTAATTCTA+AGG - chr7_2:56918991-56919010 Msa1064390:CDS 25.0%
! TCTAAAAAATTTAGCTGTGT+CGG + chr7_2:56919093-56919112 None:intergenic 25.0%
! TAACATAACAATTGTGTATC+CGG + chr7_2:56919265-56919284 None:intergenic 25.0%
! ATCTGTTAAAAAAATGACAC+CGG + chr7_2:56919357-56919376 None:intergenic 25.0%
! GATTGAGAATGTGATAAAAT+AGG + chr7_2:56919549-56919568 None:intergenic 25.0%
! ATTCAATATCAAAACTTCCA+AGG - chr7_2:56919712-56919731 Msa1064390:intron 25.0%
! TATTTAGGTGCAAAAAAATG+AGG - chr7_2:56919844-56919863 Msa1064390:CDS 25.0%
!! GAAGAATTTAGAACTTATTG+GGG - chr7_2:56919869-56919888 Msa1064390:CDS 25.0%
!! TTGAGGTATAAGCAAATTTT+TGG + chr7_2:56919986-56920005 None:intergenic 25.0%
! TTATACCTCAAAAGATGTAA+TGG - chr7_2:56919995-56920014 Msa1064390:five_prime_UTR 25.0%
!! GCTATTGATAACATTGATAA+TGG + chr7_2:56920070-56920089 None:intergenic 25.0%
! TTTTATTGTGAAGGAAGGAA+GGG + chr7_2:56917193-56917212 None:intergenic 30.0%
! TTTTTATTGTGAAGGAAGGA+AGG + chr7_2:56917194-56917213 None:intergenic 30.0%
TTACCAGAAGAGAAGAAAAA+TGG + chr7_2:56917235-56917254 None:intergenic 30.0%
GAGCAATGGTTAGATTAAAA+GGG - chr7_2:56917418-56917437 Msa1064390:three_prime_UTR 30.0%
GTTTCAATGTATACACAACA+AGG - chr7_2:56917453-56917472 Msa1064390:CDS 30.0%
TATACACAACAAGGTATGAA+AGG - chr7_2:56917462-56917481 Msa1064390:CDS 30.0%
CAACCATTTATGATACCTTT+AGG - chr7_2:56917801-56917820 Msa1064390:CDS 30.0%
!! ACTCCTAAAGGTATCATAAA+TGG + chr7_2:56917807-56917826 None:intergenic 30.0%
ATATATTATCAGGACTATGC+TGG - chr7_2:56918007-56918026 Msa1064390:intron 30.0%
! ACTATCTGAAGCAATCAAAA+TGG - chr7_2:56918123-56918142 Msa1064390:intron 30.0%
! TCTGAAATCGTTTGATGAAA+TGG - chr7_2:56918267-56918286 Msa1064390:intron 30.0%
!! AGCTGTAGCTTTAATTAAAC+AGG - chr7_2:56918342-56918361 Msa1064390:CDS 30.0%
CTTACCTTATGTAAGTTACA+CGG + chr7_2:56918375-56918394 None:intergenic 30.0%
!! CAGTTGATAGTTGGAAATTT+GGG - chr7_2:56918540-56918559 Msa1064390:intron 30.0%
AATATCCGGTTTCAAATCAA+CGG + chr7_2:56918625-56918644 None:intergenic 30.0%
CAATACTTACTTGGAATATC+CGG + chr7_2:56918639-56918658 None:intergenic 30.0%
ATCCATATTCTGTATACATC+CGG + chr7_2:56918797-56918816 None:intergenic 30.0%
! TTTTAGACAAAAGTCTCCAA+AGG + chr7_2:56918858-56918877 None:intergenic 30.0%
AACAACAAATTCATCTTGCT+TGG + chr7_2:56918927-56918946 None:intergenic 30.0%
!!! GCAAGATGAATTTGTTGTTT+TGG - chr7_2:56918928-56918947 Msa1064390:CDS 30.0%
! TACTTATTGACTATGAAGCA+CGG - chr7_2:56919032-56919051 Msa1064390:CDS 30.0%
TTAAGAAAGAAATCCATGCA+TGG + chr7_2:56919304-56919323 None:intergenic 30.0%
ATCATCAAGAAACAAGCATA+TGG + chr7_2:56919523-56919542 None:intergenic 30.0%
! TTGTGATAAGCTCTAATAAG+TGG - chr7_2:56919794-56919813 Msa1064390:CDS 30.0%
! AATTTAGAACTTATTGGGGT+TGG - chr7_2:56919873-56919892 Msa1064390:CDS 30.0%
TTCCTCAATGTCTTATAAGA+AGG + chr7_2:56920026-56920045 None:intergenic 30.0%
GAAAGAAACATGCAAAGAGT+TGG + chr7_2:56917148-56917167 None:intergenic 35.0%
GAAAAATGGATGGAATGGAA+TGG + chr7_2:56917221-56917240 None:intergenic 35.0%
GAGAAGAAAAATGGATGGAA+TGG + chr7_2:56917226-56917245 None:intergenic 35.0%
CAGAAGAGAAGAAAAATGGA+TGG + chr7_2:56917231-56917250 None:intergenic 35.0%
!! CATCCATTTTTCTTCTCTTC+TGG - chr7_2:56917229-56917248 Msa1064390:three_prime_UTR 35.0%
ATATTCTCCATCATTCACCT+CGG + chr7_2:56917334-56917353 None:intergenic 35.0%
! GTATCAAAATGATGGAGCAA+TGG - chr7_2:56917404-56917423 Msa1064390:three_prime_UTR 35.0%
GGAGCAATGGTTAGATTAAA+AGG - chr7_2:56917417-56917436 Msa1064390:three_prime_UTR 35.0%
ACCAAGATTCAATGACTGTT+TGG - chr7_2:56917490-56917509 Msa1064390:CDS 35.0%
CCAAGATTCAATGACTGTTT+GGG - chr7_2:56917491-56917510 Msa1064390:CDS 35.0%
! CTTCATTGATAGCATTCTCT+TGG - chr7_2:56917840-56917859 Msa1064390:CDS 35.0%
CATGTGGCTATGATTAATGT+TGG - chr7_2:56917977-56917996 Msa1064390:intron 35.0%
ATTGCTTCAGATAGTTTCGA+GGG + chr7_2:56918118-56918137 None:intergenic 35.0%
AATCAAAATGGCACAACAGA+AGG - chr7_2:56918135-56918154 Msa1064390:intron 35.0%
GTGGACATTGTCAAAATTGT+CGG + chr7_2:56918194-56918213 None:intergenic 35.0%
AAATGGATGATCATCTTGCT+CGG - chr7_2:56918284-56918303 Msa1064390:CDS 35.0%
GTAACCGTGTAACTTACATA+AGG - chr7_2:56918368-56918387 Msa1064390:CDS 35.0%
CGTTTACCCTATAAATTGCA+GGG - chr7_2:56918513-56918532 Msa1064390:intron 35.0%
CCAAATTTCCAACTATCAAC+TGG + chr7_2:56918542-56918561 None:intergenic 35.0%
!! CCAGTTGATAGTTGGAAATT+TGG - chr7_2:56918539-56918558 Msa1064390:intron 35.0%
! AAATCAACGGTAAGTTGAAC+AGG + chr7_2:56918612-56918631 None:intergenic 35.0%
!! ACTTACCGTTGATTTGAAAC+CGG - chr7_2:56918617-56918636 Msa1064390:CDS 35.0%
CGGATATTCCAAGTAAGTAT+TGG - chr7_2:56918637-56918656 Msa1064390:CDS 35.0%
TCAAGAATCTTTAGCTGTGA+AGG - chr7_2:56918746-56918765 Msa1064390:intron 35.0%
AATCTTTAGCTGTGAAGGAA+GGG - chr7_2:56918751-56918770 Msa1064390:intron 35.0%
AACCGGATGTATACAGAATA+TGG - chr7_2:56918792-56918811 Msa1064390:intron 35.0%
!!! TTTGTTGTTTTGGCAACTGA+TGG - chr7_2:56918938-56918957 Msa1064390:CDS 35.0%
!!! TTGTTGTTTTGGCAACTGAT+GGG - chr7_2:56918939-56918958 Msa1064390:CDS 35.0%
! TTTAGAGTTTGAACCATGCA+TGG - chr7_2:56919288-56919307 Msa1064390:intron 35.0%
AAGAATGGAAAGCTCTTGAA+GGG - chr7_2:56919676-56919695 Msa1064390:intron 35.0%
CAATCATCTAAGCACCTTAA+TGG - chr7_2:56919759-56919778 Msa1064390:CDS 35.0%
AATGCCTTCAACTTCCATTA+AGG + chr7_2:56919776-56919795 None:intergenic 35.0%
! CATAGCCATTACATCTTTTG+AGG + chr7_2:56920003-56920022 None:intergenic 35.0%
TGCCTTCTTATAAGACATTG+AGG - chr7_2:56920021-56920040 Msa1064390:five_prime_UTR 35.0%
ACGTTGTCTTCCAAGAAACA+TGG - chr7_2:56917254-56917273 Msa1064390:three_prime_UTR 40.0%
CGTTGTCTTCCAAGAAACAT+GGG - chr7_2:56917255-56917274 Msa1064390:three_prime_UTR 40.0%
GCTGTCACGTATCAAAATGA+TGG - chr7_2:56917396-56917415 Msa1064390:three_prime_UTR 40.0%
CCCAAACAGTCATTGAATCT+TGG + chr7_2:56917494-56917513 None:intergenic 40.0%
AGATTCAATGACTGTTTGGG+AGG - chr7_2:56917494-56917513 Msa1064390:CDS 40.0%
TTGCTGGAATCATACAGCTA+AGG + chr7_2:56917878-56917897 None:intergenic 40.0%
GATTGCTTCAGATAGTTTCG+AGG + chr7_2:56918119-56918138 None:intergenic 40.0%
TGTTGATGCGGTTACTATTG+TGG + chr7_2:56918216-56918235 None:intergenic 40.0%
CAAGGGATATGTTGTTGATG+CGG + chr7_2:56918228-56918247 None:intergenic 40.0%
ACAACATATCCCTTGCTTCA+TGG - chr7_2:56918233-56918252 Msa1064390:intron 40.0%
CAACATATCCCTTGCTTCAT+GGG - chr7_2:56918234-56918253 Msa1064390:intron 40.0%
AATGGATGATCATCTTGCTC+GGG - chr7_2:56918285-56918304 Msa1064390:CDS 40.0%
AACACTGATAGCTATTGCAG+TGG - chr7_2:56918313-56918332 Msa1064390:CDS 40.0%
GCGTTTACCCTATAAATTGC+AGG - chr7_2:56918512-56918531 Msa1064390:intron 40.0%
TGGTCACCCTGCAATTTATA+GGG + chr7_2:56918522-56918541 None:intergenic 40.0%
GAATCTTTAGCTGTGAAGGA+AGG - chr7_2:56918750-56918769 Msa1064390:intron 40.0%
!!! TGTTGTTTTGGCAACTGATG+GGG - chr7_2:56918940-56918959 Msa1064390:CDS 40.0%
TTGACTATGAAGCACGGATA+CGG - chr7_2:56919038-56919057 Msa1064390:CDS 40.0%
ACTCTGATCCTTTCTTTCTC+CGG - chr7_2:56919243-56919262 Msa1064390:intron 40.0%
TTGTGTATCCGGAGAAAGAA+AGG + chr7_2:56919254-56919273 None:intergenic 40.0%
TGTCTGTTAGCTCACAAAAC+CGG - chr7_2:56919335-56919354 Msa1064390:intron 40.0%
!! TTTGCTGCTGTTGACTTTCT+TGG + chr7_2:56919429-56919448 None:intergenic 40.0%
TCCAGGATACTTATACATCC+AGG + chr7_2:56919478-56919497 None:intergenic 40.0%
! CAATCGTCTATTTTCGATCC+AGG + chr7_2:56919495-56919514 None:intergenic 40.0%
GAAGACAATGAAACTGTTGC+TGG - chr7_2:56919630-56919649 Msa1064390:intron 40.0%
GAAACTGTTGCTGGAAAAGT+TGG - chr7_2:56919639-56919658 Msa1064390:intron 40.0%
GAAGAATGGAAAGCTCTTGA+AGG - chr7_2:56919675-56919694 Msa1064390:intron 40.0%
!! CTCATATTTCTAGCAAGCCT+TGG + chr7_2:56919732-56919751 None:intergenic 40.0%
AGCACCTTAATGGAAGTTGA+AGG - chr7_2:56919769-56919788 Msa1064390:CDS 40.0%
!! ATTGGGGTTGGTGTAAAAAG+TGG - chr7_2:56919885-56919904 Msa1064390:CDS 40.0%
AGGAACATGGAAGAAGTGGT+TGG + chr7_2:56917118-56917137 None:intergenic 45.0%
AGACAGGAACATGGAAGAAG+TGG + chr7_2:56917122-56917141 None:intergenic 45.0%
ATTGTGAAGGAAGGAAGGGT+GGG + chr7_2:56917189-56917208 None:intergenic 45.0%
TATTGTGAAGGAAGGAAGGG+TGG + chr7_2:56917190-56917209 None:intergenic 45.0%
TGTCTTCCAAGAAACATGGG+TGG - chr7_2:56917258-56917277 Msa1064390:three_prime_UTR 45.0%
GTTGAAACCGAGGTGAATGA+TGG - chr7_2:56917324-56917343 Msa1064390:three_prime_UTR 45.0%
TGCGAAACTTTGTGTCCTAG+AGG + chr7_2:56918076-56918095 None:intergenic 45.0%
TGATGCGGTTACTATTGTGG+TGG + chr7_2:56918213-56918232 None:intergenic 45.0%
ATATCCCTTGCTTCATGGGA+AGG - chr7_2:56918238-56918257 Msa1064390:intron 45.0%
ACATCCTTCCCATGAAGCAA+GGG + chr7_2:56918245-56918264 None:intergenic 45.0%
AACATCCTTCCCATGAAGCA+AGG + chr7_2:56918246-56918265 None:intergenic 45.0%
TGTCTCTGTGATTGCAGTTG+AGG + chr7_2:56918461-56918480 None:intergenic 45.0%
CTGGTCACCCTGCAATTTAT+AGG + chr7_2:56918523-56918542 None:intergenic 45.0%
TCGTGCAGTTCTTTGCACAA+GGG - chr7_2:56918569-56918588 Msa1064390:intron 45.0%
CTAGCTATGTCAAGAGCCTT+TGG - chr7_2:56918839-56918858 Msa1064390:intron 45.0%
! ACACATCTGGTGATGCAATG+AGG + chr7_2:56918889-56918908 None:intergenic 45.0%
ACACGACACATGTCTGACAT+GGG - chr7_2:56919162-56919181 Msa1064390:CDS 45.0%
TGTGAGCTAACAGACACTGA+AGG + chr7_2:56919331-56919350 None:intergenic 45.0%
GCCTGGATGTATAAGTATCC+TGG - chr7_2:56919474-56919493 Msa1064390:intron 45.0%
TGTTGCTGGAAAAGTTGGAG+TGG - chr7_2:56919644-56919663 Msa1064390:intron 45.0%
TGGAAAAGTTGGAGTGGAAC+TGG - chr7_2:56919650-56919669 Msa1064390:intron 45.0%
GAGTGGAACTGGATGAAGAA+TGG - chr7_2:56919661-56919680 Msa1064390:intron 45.0%
AGTTGGCAGAGACAGGAACA+TGG + chr7_2:56917131-56917150 None:intergenic 50.0%
TGCAAAGAGTTGGCAGAGAC+AGG + chr7_2:56917138-56917157 None:intergenic 50.0%
GGAAGGAAGGGTGGGAATTA+AGG + chr7_2:56917181-56917200 None:intergenic 50.0%
CAACAGCCACCCATGTTTCT+TGG + chr7_2:56917267-56917286 None:intergenic 50.0%
AGCCACGATGTTGCTCTTAG+AGG - chr7_2:56917288-56917307 Msa1064390:three_prime_UTR 50.0%
! CTCCTCTAAGAGCAACATCG+TGG + chr7_2:56917293-56917312 None:intergenic 50.0%
CACGATGTTGCTCTTAGAGG+AGG - chr7_2:56917291-56917310 Msa1064390:three_prime_UTR 50.0%
GATGTTGCTCTTAGAGGAGG+AGG - chr7_2:56917294-56917313 Msa1064390:three_prime_UTR 50.0%
CAGGACTATGCTGGAGAAGA+AGG - chr7_2:56918016-56918035 Msa1064390:intron 50.0%
CTATGCTGGAGAAGAAGGCA+TGG - chr7_2:56918021-56918040 Msa1064390:intron 50.0%
! GAAGAAGGCATGGTCTTCTG+TGG - chr7_2:56918031-56918050 Msa1064390:intron 50.0%
GTCTTCTGTGGCGTGTTTGA+CGG - chr7_2:56918043-56918062 Msa1064390:intron 50.0%
TTTGACGGTCATGGTCCTCT+AGG - chr7_2:56918058-56918077 Msa1064390:intron 50.0%
!! CAGGGTGACCAGTTGATAGT+TGG - chr7_2:56918531-56918550 Msa1064390:intron 50.0%
CTCGTGCAGTTCTTTGCACA+AGG - chr7_2:56918568-56918587 Msa1064390:intron 50.0%
TTTCGCTGCAGACGAAGAAC+CGG - chr7_2:56918775-56918794 Msa1064390:intron 50.0%
! ATGCCTGATGATGACTGTCC+TGG - chr7_2:56918815-56918834 Msa1064390:intron 50.0%
AGTCCAGGACAGTCATCATC+AGG + chr7_2:56918821-56918840 None:intergenic 50.0%
GCTCTTGACATAGCTAGTCC+AGG + chr7_2:56918836-56918855 None:intergenic 50.0%
ATGAAGCACGGATACGGACA+CGG - chr7_2:56919044-56919063 Msa1064390:CDS 50.0%
GACACGACACATGTCTGACA+TGG - chr7_2:56919161-56919180 Msa1064390:CDS 50.0%
CACGACACATGTCTGACATG+GGG - chr7_2:56919163-56919182 Msa1064390:CDS 50.0%
GCACAGAGACTCCTGAGATA+AGG + chr7_2:56919194-56919213 None:intergenic 50.0%
TAAAGCGCGCTGTTAAAGCC+TGG - chr7_2:56919457-56919476 Msa1064390:intron 50.0%
GTTGCTCTTAGAGGAGGAGG+AGG - chr7_2:56917297-56917316 Msa1064390:three_prime_UTR 55.0%
AGGAGGCAGAGTTGAAACCG+AGG - chr7_2:56917314-56917333 Msa1064390:three_prime_UTR 55.0%
TGTGGCGTGTTTGACGGTCA+TGG - chr7_2:56918049-56918068 Msa1064390:intron 55.0%
ATGGGGACACGCCTTATCTC+AGG - chr7_2:56919180-56919199 Msa1064390:CDS 55.0%
ACGGATACGGACACGGACAC+CGG - chr7_2:56919051-56919070 Msa1064390:CDS 60.0%
CGGCGTGTCTGTGTCGTGTC+CGG + chr7_2:56919073-56919092 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 56917114 56920123 56917114 ID=Msa1064390;Name=Msa1064390
chr7_2 mRNA 56917114 56920123 56917114 ID=Msa1064390-mRNA-1;Parent=Msa1064390;Name=Msa1064390-mRNA-1;_AED=0.04;_eAED=0.04;_QI=159|1|1|1|1|1|5|335|446
chr7_2 exon 56917114 56917862 56917114 ID=Msa1064390-mRNA-1:exon:10825;Parent=Msa1064390-mRNA-1
chr7_2 exon 56918276 56918499 56918276 ID=Msa1064390-mRNA-1:exon:10824;Parent=Msa1064390-mRNA-1
chr7_2 exon 56918589 56918703 56918589 ID=Msa1064390-mRNA-1:exon:10823;Parent=Msa1064390-mRNA-1
chr7_2 exon 56918874 56919218 56918874 ID=Msa1064390-mRNA-1:exon:10822;Parent=Msa1064390-mRNA-1
chr7_2 exon 56919722 56920123 56919722 ID=Msa1064390-mRNA-1:exon:10821;Parent=Msa1064390-mRNA-1
chr7_2 five_prime_UTR 56919965 56920123 56919965 ID=Msa1064390-mRNA-1:five_prime_utr;Parent=Msa1064390-mRNA-1
chr7_2 CDS 56919722 56919964 56919722 ID=Msa1064390-mRNA-1:cds;Parent=Msa1064390-mRNA-1
chr7_2 CDS 56918874 56919218 56918874 ID=Msa1064390-mRNA-1:cds;Parent=Msa1064390-mRNA-1
chr7_2 CDS 56918589 56918703 56918589 ID=Msa1064390-mRNA-1:cds;Parent=Msa1064390-mRNA-1
chr7_2 CDS 56918276 56918499 56918276 ID=Msa1064390-mRNA-1:cds;Parent=Msa1064390-mRNA-1
chr7_2 CDS 56917449 56917862 56917449 ID=Msa1064390-mRNA-1:cds;Parent=Msa1064390-mRNA-1
chr7_2 three_prime_UTR 56917114 56917448 56917114 ID=Msa1064390-mRNA-1:three_prime_utr;Parent=Msa1064390-mRNA-1
Gene Sequence

>Msa1064390

ATGGGTGGCTGTTGCAGCCACGATGTTGCTCTTAGAGGAGGAGGAGGCAGAGTTGAAACCGAGGTGAATGATGGAGAATATGAATATGATGATAGTGAAGATAATAATATTAATAATAATGATGCTGTCACGTATCAAAATGATGGAGCAATGGTTAGATTAAAAGGGTTTTCTAAGTTTGTTTCAATGTATACACAACAAGGTATGAAAGGTGTTAACCAAGATTCAATGACTGTTTGGGAGGACTATGCTGGAGAAGAAGGCATGGTCTTCTGTGGCGTGTTTGACGGTCATGGTCCTCTAGGACACAAAGTTTCGCAATTTATTCGCGACAATCTACCCTCGAAACTATCTGAAGCAATCAAAATGGCACAACAGAAGGCCAACAAATACTATGATGCTAATGACGCAGATACCGACAATTTTGACAATGTCCACCACAATAGTAACCGCATCAACAACATATCCCTTGCTTCATGGGAAGGATGTTTTCTGAAATCGTTTGATGAAATGGATGATCATCTTGCTCGGGAAGTTAACACTGATAGCTATTGCAGTGGTTGCACAGCTGTAGCTTTAATTAAACAGGGTGACCAGTTGATAGTTGGAAATTTGGGCGATTCTCGTGCAGTTCTTTGCACAAGGGATAGAGATCAACTAATTCCTGTTCAACTTACCGTTGATTTGAAACCGGATATTCCAAGTGAAGCTTCAAGAATCTTTAGCTGTGAAGGAAGGGTTTTCGCTGCAGACGAAGAACCGGATGTATACAGAATATGGATGCCTGATGATGACTGTCCTGGACTAGCTATGTCAAGAGCCTTTGGAGACTTTTGTCTAAAAGATTATGGCCTCATTGCATCACCAGATGTGTTTTACAGAAAAATTACCAAGCAAGATGAATTTGTTGTTTTGGCAACTGATGGGATATGGGATGTTCTGACAAACAATGAAGTAATAAACATAGTTGCTTCAGCGCCAAGAAAGTCAACAGCAGCAAAGATGTTAGTAAAGCGCGCTGTTAAAGCCTGGATGTATAAGTATCCTGGATCGAAAATAGACGATTGTGCAGCCATATGCTTGTTTCTTGATGATCAACCTATTTTATCACATTCTCAATCGAGTTTCAAGCACTCTAAAAGTCGACATCGTCGCAGTAAGCACTCTAAATCACATCGAAACGAAGACAATGAAACTGTTGCTGGAAAAGTTGGAGTGGAACTGGATGAAGAATGGAAAGCTCTTGAAGGGTTAGCTAGAGCAAATTCAATATCAAAACTTCCAAGGCTTGCTAGAAATATGAGTAAAAGACAATCATCTAAGCACCTTAATGGAAGTTGA
Protein sequence

>Msa1064390

MGGCCSHDVALRGGGGRVETEVNDGEYEYDDSEDNNINNNDAVTYQNDGAMVRLKGFSKFVSMYTQQGMKGVNQDSMTVWEDYAGEEGMVFCGVFDGHGPLGHKVSQFIRDNLPSKLSEAIKMAQQKANKYYDANDADTDNFDNVHHNSNRINNISLASWEGCFLKSFDEMDDHLAREVNTDSYCSGCTAVALIKQGDQLIVGNLGDSRAVLCTRDRDQLIPVQLTVDLKPDIPSEASRIFSCEGRVFAADEEPDVYRIWMPDDDCPGLAMSRAFGDFCLKDYGLIASPDVFYRKITKQDEFVVLATDGIWDVLTNNEVINIVASAPRKSTAAKMLVKRAVKAWMYKYPGSKIDDCAAICLFLDDQPILSHSQSSFKHSKSRHRRSKHSKSHRNEDNETVAGKVGVELDEEWKALEGLARANSISKLPRLARNMSKRQSSKHLNGS*