AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1109370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1109370 MtrunA17_Chr7g0243571 94.643 448 21 2 1 446 1 447 0.0 851
Msa1109370 MtrunA17_Chr4g0004971 57.568 370 133 6 1 368 1 348 1.19e-147 424
Msa1109370 MtrunA17_Chr7g0221691 46.318 421 203 8 1 411 42 449 8.63e-120 357
Msa1109370 MtrunA17_Chr7g0249421 46.154 429 182 8 52 431 57 485 1.33e-119 358
Msa1109370 MtrunA17_Chr4g0022171 43.584 413 194 9 56 435 62 468 5.48e-115 345
Msa1109370 MtrunA17_Chr2g0324061 44.444 414 187 8 56 431 56 464 3.35e-110 333
Msa1109370 MtrunA17_Chr7g0272061 45.538 325 170 3 52 374 52 371 1.15e-99 303
Msa1109370 MtrunA17_Chr1g0192421 44.340 318 164 3 47 363 45 350 5.09e-99 300
Msa1109370 MtrunA17_Chr4g0067711 46.302 311 150 4 60 367 60 356 8.43e-98 297
Msa1109370 MtrunA17_Chr2g0295401 47.097 310 149 5 60 367 61 357 7.82e-96 292
Msa1109370 MtrunA17_Chr8g0342431 46.243 346 132 6 52 363 47 372 1.91e-92 285
Msa1109370 MtrunA17_Chr1g0151781 44.984 309 157 3 59 367 37 332 4.29e-89 275
Msa1109370 MtrunA17_Chr4g0066371 27.796 313 162 6 60 344 47 323 3.35e-32 126
Msa1109370 MtrunA17_Chr6g0486661 27.381 336 181 12 64 374 97 394 5.61e-27 114
Msa1109370 MtrunA17_Chr2g0286951 26.603 312 172 5 57 345 48 325 1.01e-26 111
Msa1109370 MtrunA17_Chr3g0136711 29.474 285 143 8 91 374 65 292 3.99e-25 104
Msa1109370 MtrunA17_Chr5g0396731 31.481 270 137 8 60 325 75 300 5.63e-25 105
Msa1109370 MtrunA17_Chr3g0135961 31.469 286 139 13 71 353 269 500 7.02e-24 104
Msa1109370 MtrunA17_Chr1g0150451 29.091 275 138 7 93 366 110 328 8.48e-24 101
Msa1109370 MtrunA17_Chr3g0112291 30.952 252 136 9 74 323 106 321 8.33e-23 99.8
Msa1109370 MtrunA17_Chr1g0150781 31.636 275 130 11 91 342 290 529 9.29e-23 100
Msa1109370 MtrunA17_Chr4g0070871 34.483 232 113 9 91 322 253 445 3.44e-21 95.9
Msa1109370 MtrunA17_Chr1g0212961 27.857 280 137 11 91 368 126 342 9.17e-21 93.2
Msa1109370 MtrunA17_Chr8g0389921 31.466 232 110 8 91 319 198 383 7.70e-20 91.7
Msa1109370 MtrunA17_Chr2g0299981 31.004 229 138 9 91 318 267 476 2.82e-19 90.5
Msa1109370 MtrunA17_Chr5g0435721 28.517 263 126 7 74 323 206 419 1.96e-18 87.4
Msa1109370 MtrunA17_Chr2g0293811 27.184 309 154 11 61 342 53 317 2.91e-18 85.9
Msa1109370 MtrunA17_Chr4g0051661 38.272 162 84 6 180 340 235 381 5.53e-18 85.5
Msa1109370 MtrunA17_Chr6g0483411 28.241 216 120 6 164 363 122 318 3.11e-17 82.4
Msa1109370 MtrunA17_Chr1g0194191 28.244 262 134 9 91 342 118 335 4.66e-17 82.8
Msa1109370 MtrunA17_Chr3g0105351 26.398 322 175 11 1 322 15 274 8.90e-17 80.9
Msa1109370 MtrunA17_Chr2g0317021 37.821 156 81 6 187 341 177 317 1.45e-16 80.5
Msa1109370 MtrunA17_Chr3g0105371 29.119 261 134 10 62 322 89 298 3.02e-16 79.7
Msa1109370 MtrunA17_Chr5g0430481 27.969 261 137 9 62 322 125 334 5.24e-16 79.3
Msa1109370 MtrunA17_Chr3g0115851 37.580 157 82 6 187 342 126 267 6.57e-16 77.8
Msa1109370 MtrunA17_Chr1g0171571 25.581 301 176 10 64 363 391 644 7.31e-16 80.1
Msa1109370 MtrunA17_Chr8g0360351 28.136 295 152 12 55 341 24 266 8.31e-16 77.4
Msa1109370 MtrunA17_Chr4g0050381 35.897 156 84 6 187 341 121 261 1.04e-15 77.4
Msa1109370 MtrunA17_Chr7g0256751 25.464 377 200 15 57 391 40 377 2.54e-15 77.8
Msa1109370 MtrunA17_Chr3g0136811 25.077 323 190 10 45 341 13 309 5.96e-15 75.9
Msa1109370 MtrunA17_Chr1g0158781 30.472 233 115 8 91 323 145 330 8.07e-15 75.9
Msa1109370 MtrunA17_Chr2g0279151 34.395 157 87 6 187 342 125 266 9.50e-15 74.3
Msa1109370 MtrunA17_Chr5g0426141 36.306 157 84 6 187 342 126 267 2.52e-14 73.2
Msa1109370 MtrunA17_Chr5g0407161 26.937 271 116 8 91 342 124 331 4.43e-14 73.6
Msa1109370 MtrunA17_Chr3g0126511 25.974 231 119 7 93 322 127 306 6.66e-14 72.8
Msa1109370 MtrunA17_Chr3g0138281 25.784 287 145 10 91 367 121 349 3.34e-13 70.9
Msa1109370 MtrunA17_Chr7g0238501 23.701 308 170 11 63 341 239 510 1.78e-12 69.3
Msa1109370 MtrunA17_Chr4g0001761 27.863 262 144 10 86 323 47 287 4.89e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1109370 AT5G01700.2 51.206 373 144 4 1 367 1 341 4.39e-131 384
Msa1109370 AT5G01700.1 53.770 305 128 1 63 367 1 292 2.91e-121 357
Msa1109370 AT1G16220.1 43.780 418 192 6 56 430 60 477 8.75e-120 358
Msa1109370 AT1G79630.1 42.757 428 192 6 56 430 63 490 1.01e-119 359
Msa1109370 AT1G79630.8 42.757 428 192 6 56 430 59 486 1.51e-119 358
Msa1109370 AT5G36250.1 48.333 360 168 7 38 383 46 401 1.46e-116 349
Msa1109370 AT1G03590.1 44.527 402 194 6 56 430 56 455 7.51e-114 342
Msa1109370 AT5G36250.2 46.524 374 168 8 38 383 46 415 2.15e-112 338
Msa1109370 AT3G02750.2 44.804 433 181 7 54 430 58 488 3.88e-112 339
Msa1109370 AT3G02750.1 44.804 433 181 7 54 430 58 488 3.88e-112 339
Msa1109370 AT4G03415.1 45.274 402 188 8 63 436 70 467 5.34e-112 338
Msa1109370 AT4G03415.3 45.274 402 188 8 63 436 70 467 5.34e-112 338
Msa1109370 AT4G03415.2 45.274 402 188 8 63 436 70 467 5.34e-112 338
Msa1109370 AT1G79630.2 41.687 403 182 6 81 430 18 420 2.87e-108 327
Msa1109370 AT1G79630.7 41.687 403 182 6 81 430 18 420 2.87e-108 327
Msa1109370 AT3G02750.3 41.300 477 186 9 46 431 51 524 1.94e-104 320
Msa1109370 AT1G79630.6 49.315 292 123 4 164 430 89 380 1.53e-96 296
Msa1109370 AT1G79630.3 49.315 292 123 4 164 430 89 380 1.53e-96 296
Msa1109370 AT1G79630.4 49.315 292 123 4 164 430 89 380 1.53e-96 296
Msa1109370 AT1G79630.5 49.315 292 123 4 164 430 89 380 1.53e-96 296
Msa1109370 AT3G05640.2 44.984 309 152 3 56 363 58 349 2.57e-94 289
Msa1109370 AT3G05640.1 44.984 309 152 3 56 363 58 349 2.57e-94 289
Msa1109370 AT3G05640.3 44.984 309 152 3 56 363 58 349 2.57e-94 289
Msa1109370 AT5G27930.1 43.770 313 162 4 52 362 53 353 6.45e-93 286
Msa1109370 AT5G27930.2 43.770 313 162 4 52 362 53 353 6.45e-93 286
Msa1109370 AT3G16800.2 41.311 351 181 5 16 363 20 348 1.69e-88 273
Msa1109370 AT3G16800.1 41.311 351 181 5 16 363 20 348 1.69e-88 273
Msa1109370 AT3G16800.3 41.311 351 181 5 16 363 20 348 1.69e-88 273
Msa1109370 AT5G36250.3 46.897 290 139 6 38 313 46 334 8.68e-87 269
Msa1109370 AT3G16800.4 44.322 273 129 4 94 363 1 253 1.34e-74 234
Msa1109370 AT3G16800.6 44.322 273 129 4 94 363 1 253 1.34e-74 234
Msa1109370 AT5G27930.3 41.288 264 135 3 52 310 53 301 5.48e-73 233
Msa1109370 AT5G26010.1 41.003 339 172 6 33 367 16 330 1.34e-72 232
Msa1109370 AT4G32950.1 41.368 307 147 5 62 366 44 319 2.75e-71 228
Msa1109370 AT4G32950.2 41.833 251 113 5 62 310 44 263 2.63e-53 180
Msa1109370 AT3G16800.5 34.498 229 125 5 16 241 20 226 2.14e-35 131
Msa1109370 AT3G06270.1 27.986 293 155 6 73 345 70 326 2.10e-30 120
Msa1109370 AT2G20050.2 27.160 324 172 10 64 364 116 398 6.22e-29 120
Msa1109370 AT2G20050.1 27.160 324 172 10 64 364 116 398 7.70e-29 120
Msa1109370 AT4G31750.2 28.070 285 145 9 85 366 56 283 9.17e-24 101
Msa1109370 AT4G31750.1 28.070 285 145 9 85 366 56 283 1.68e-23 100
Msa1109370 AT4G31750.3 28.070 285 145 9 85 366 56 283 1.68e-23 100
Msa1109370 AT5G24940.1 30.159 252 126 6 91 342 64 265 2.35e-22 99.4
Msa1109370 AT1G72770.4 33.610 241 119 9 91 322 238 446 4.12e-22 99.4
Msa1109370 AT1G72770.1 33.610 241 119 9 91 322 238 446 4.12e-22 99.4
Msa1109370 AT1G72770.3 33.610 241 119 9 91 322 238 446 4.12e-22 99.4
Msa1109370 AT5G10740.1 30.435 253 124 7 91 342 64 265 7.41e-22 96.7
Msa1109370 AT5G10740.2 30.435 253 124 7 91 342 64 265 7.41e-22 96.7
Msa1109370 AT1G07430.1 37.288 177 83 5 160 323 193 354 1.87e-20 93.6
Msa1109370 AT5G59220.1 31.452 248 108 9 88 323 145 342 1.24e-19 90.9
Msa1109370 AT5G57050.1 31.466 232 119 7 91 322 160 351 2.33e-19 90.5
Msa1109370 AT5G57050.2 31.466 232 119 7 91 322 120 311 2.42e-19 89.7
Msa1109370 AT1G17550.1 29.752 242 120 8 91 318 237 442 4.03e-19 90.1
Msa1109370 AT1G17550.2 29.752 242 120 8 91 318 237 442 4.03e-19 90.1
Msa1109370 AT4G26080.1 32.895 228 111 9 91 318 172 357 1.12e-18 88.2
Msa1109370 AT1G43900.1 31.325 249 118 9 91 338 154 350 2.07e-18 87.0
Msa1109370 AT1G67820.2 26.332 319 179 9 63 380 87 350 2.53e-18 87.0
Msa1109370 AT1G67820.1 26.332 319 179 9 63 380 123 386 3.95e-18 86.7
Msa1109370 AT2G34740.1 32.663 199 111 8 166 363 159 335 4.05e-18 85.5
Msa1109370 AT3G11410.1 35.326 184 83 6 160 322 173 341 1.18e-17 85.1
Msa1109370 AT4G28400.3 30.068 296 145 15 55 341 3 245 1.39e-17 82.8
Msa1109370 AT5G02760.1 26.074 326 159 12 91 375 72 356 1.79e-17 84.3
Msa1109370 AT5G51760.2 33.168 202 108 6 153 342 155 341 1.91e-17 84.3
Msa1109370 AT5G51760.1 33.168 202 108 6 153 342 185 371 2.19e-17 84.3
Msa1109370 AT4G28400.1 29.054 296 148 13 55 341 25 267 2.87e-17 82.4
Msa1109370 AT2G40180.1 28.522 291 153 10 60 342 128 371 4.45e-17 83.2
Msa1109370 AT1G78200.5 33.146 178 105 5 166 342 59 223 8.36e-17 80.1
Msa1109370 AT1G78200.4 33.146 178 105 5 166 342 59 223 8.36e-17 80.1
Msa1109370 AT2G29380.1 35.165 182 77 9 160 322 150 309 1.01e-16 81.6
Msa1109370 AT1G78200.1 33.146 178 105 5 166 342 104 268 1.02e-16 80.5
Msa1109370 AT1G78200.3 33.146 178 105 5 166 342 104 268 1.02e-16 80.5
Msa1109370 AT1G78200.2 33.146 178 105 5 166 342 104 268 1.02e-16 80.5
Msa1109370 AT3G17250.1 27.559 254 124 8 89 329 156 362 1.26e-16 82.0
Msa1109370 AT5G53140.1 27.626 257 132 9 87 340 126 331 2.11e-16 81.3
Msa1109370 AT5G53140.2 27.626 257 132 9 87 340 126 331 2.11e-16 81.3
Msa1109370 AT1G07160.1 28.736 261 137 9 62 322 124 335 2.31e-16 80.9
Msa1109370 AT2G25620.1 27.063 303 155 11 75 367 114 360 2.72e-16 80.9
Msa1109370 AT2G25620.2 27.063 303 155 11 75 367 114 360 2.72e-16 80.9
Msa1109370 AT2G20630.1 28.516 256 117 10 94 341 66 263 3.00e-16 79.3
Msa1109370 AT3G62260.3 28.571 238 123 8 91 323 27 222 4.99e-16 79.0
Msa1109370 AT2G20630.2 28.516 256 117 10 94 341 66 263 7.17e-16 78.2
Msa1109370 AT3G62260.1 28.571 238 123 8 91 323 116 311 1.04e-15 79.0
Msa1109370 AT3G62260.2 28.571 238 123 8 91 323 117 312 1.06e-15 79.0
Msa1109370 AT1G18030.1 27.650 217 122 5 163 363 151 348 2.81e-15 77.4
Msa1109370 AT1G48040.1 28.862 246 125 8 91 329 116 318 8.41e-15 76.3
Msa1109370 AT1G34750.2 36.709 158 82 6 187 342 126 267 2.06e-14 73.9
Msa1109370 AT1G34750.1 36.709 158 82 6 187 342 126 267 2.06e-14 73.9
Msa1109370 AT1G34750.3 36.709 158 82 6 187 342 126 267 2.06e-14 73.9
Msa1109370 AT2G30020.1 27.203 261 141 10 62 322 141 352 3.03e-14 74.7
Msa1109370 AT2G40860.4 30.102 196 115 8 170 363 375 550 3.30e-14 75.1
Msa1109370 AT2G40860.2 32.258 155 91 5 170 323 473 614 5.05e-14 74.7
Msa1109370 AT2G40860.1 32.258 155 91 5 170 323 473 614 6.17e-14 74.3
Msa1109370 AT2G34740.2 31.953 169 98 7 166 333 173 325 2.33e-13 71.2
Msa1109370 AT2G34740.3 31.953 169 98 7 166 333 155 307 2.91e-13 70.9
Msa1109370 AT3G15260.2 35.256 156 85 6 187 341 133 273 3.33e-13 70.5
Msa1109370 AT3G15260.1 35.256 156 85 6 187 341 133 273 3.33e-13 70.5
Msa1109370 AT4G31860.3 27.815 302 168 13 45 323 13 287 5.32e-13 69.7
Msa1109370 AT4G31860.1 26.562 320 185 13 45 341 13 305 5.88e-13 70.5
Msa1109370 AT1G22280.1 35.669 157 85 6 187 342 125 266 1.00e-12 68.9
Msa1109370 AT1G22280.3 35.669 157 85 6 187 342 131 272 1.02e-12 68.9
Msa1109370 AT3G51470.1 24.627 268 141 10 64 323 76 290 7.27e-12 67.0
Msa1109370 AT1G18030.2 28.221 163 92 3 163 313 151 300 8.15e-12 66.2
Msa1109370 AT2G25070.1 30.909 165 87 6 186 341 159 305 1.01e-11 66.6
Msa1109370 AT2G25070.2 30.909 165 87 6 186 341 159 305 1.01e-11 66.6
Msa1109370 AT3G51470.2 24.627 268 141 10 64 323 32 246 1.16e-11 66.2
Msa1109370 AT1G34750.4 37.681 138 66 7 187 322 126 245 4.62e-11 63.2

Find 111 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTAAAATGTTGTATATTT+AGG 0.180151 7_3:+52908434 Msa1109370:three_prime_UTR
TTTGCTGCTGTTGACTTTCT+TGG 0.181729 7_3:-52908027 None:intergenic
CCAGTTGATAGTTGGAAATT+TGG 0.206532 7_3:+52907137 Msa1109370:CDS
GCAAGATGAATTTGTTGTTT+TGG 0.234194 7_3:+52907526 Msa1109370:CDS
CAATCATCTAAGCACCTTAA+TGG 0.234478 7_3:+52908360 Msa1109370:CDS
CAACAGCCACCCATGTTTCT+TGG 0.244069 7_3:-52905860 None:intergenic
GGAAGGAAGGGTGGGAATTA+AGG 0.256545 7_3:-52905783 None:intergenic
AATGCCTTCAACTTCCATTA+AGG 0.307538 7_3:-52908374 None:intergenic
GCTATTGATAACATTGATAA+TGG 0.318337 7_3:-52908672 None:intergenic
CAGTTGATAGTTGGAAATTT+GGG 0.326425 7_3:+52907138 Msa1109370:CDS
ACCAAGATTCAATGACAGTT+TGG 0.327013 7_3:+52906086 Msa1109370:CDS
AACCGGATGTATACAGAATA+TGG 0.329139 7_3:+52907390 Msa1109370:CDS
ACTATCTGAAGCAATCAAAA+TGG 0.340437 7_3:+52906721 Msa1109370:CDS
TCTGAAATCGTTTGATGAAA+TGG 0.343971 7_3:+52906865 Msa1109370:CDS
CCCAAACTGTCATTGAATCT+TGG 0.361120 7_3:-52906087 None:intergenic
GATTGAGAATGTGATAAAAT+AGG 0.372960 7_3:-52908147 None:intergenic
CTAGCTATGTCAAGAGCCTT+TGG 0.377892 7_3:+52907437 Msa1109370:CDS
CCAAGATTCAATGACAGTTT+GGG 0.379856 7_3:+52906087 Msa1109370:CDS
AGCTGTAGCTTTAATTAAAC+AGG 0.381379 7_3:+52906940 Msa1109370:CDS
ACAACATATCCCTTGCTTCA+TGG 0.386921 7_3:+52906831 Msa1109370:CDS
CAATACTTACTTGGAATATC+CGG 0.392328 7_3:-52907234 None:intergenic
GGAGCAATGGTTAGATTAAG+AGG 0.393042 7_3:+52906013 Msa1109370:CDS
AGCCACGATGTTGCTCTTAG+AGG 0.393147 7_3:+52905884 Msa1109370:CDS
AAATCAACAGTAAGTTGAAC+AGG 0.410781 7_3:-52907207 None:intergenic
GGTAAATAATTAGTTAATGA+TGG 0.415860 7_3:-52908651 None:intergenic
CTCATATTTCTAGCAAGCCT+TGG 0.424591 7_3:-52908330 None:intergenic
ACTTACTGTTGATTTGAAAC+CGG 0.431238 7_3:+52907215 Msa1109370:CDS
AACAACAAATTCATCTTGCT+TGG 0.431974 7_3:-52907522 None:intergenic
GAAGACAATGAAACTGTTGC+TGG 0.432915 7_3:+52908231 Msa1109370:CDS
ATTAGCATCATAGTATTTGT+TGG 0.436523 7_3:-52906756 None:intergenic
CAACATATCCCTTGCTTCAT+GGG 0.437188 7_3:+52906832 Msa1109370:CDS
CAGGGTGACCAGTTGATAGT+TGG 0.439596 7_3:+52907129 Msa1109370:intron
ATCTTCTGTGGCGTGTTTGA+CGG 0.441403 7_3:+52906641 Msa1109370:CDS
CAGGACTATGCTGGAGAAGA+AGG 0.456514 7_3:+52906614 Msa1109370:intron
CCAAATTTCCAACTATCAAC+TGG 0.463615 7_3:-52907137 None:intergenic
GAAACTGTTGCTGGAAAAGT+TGG 0.469501 7_3:+52908240 Msa1109370:CDS
ATCATCAAGAAACAAGCATA+TGG 0.471604 7_3:-52908121 None:intergenic
GCCTGGATGTATAAGTATCC+TGG 0.473714 7_3:+52908075 Msa1109370:CDS
TTTCGCTGCAGACGAAGAAC+CGG 0.478382 7_3:+52907373 Msa1109370:CDS
GAAGAATGGAAAGCTCTTGA+AGG 0.479840 7_3:+52908276 Msa1109370:CDS
TCTTGGAAGACAACGTTGCT+TGG 0.480561 7_3:-52905843 None:intergenic
GAATCTTTAGCTGTGAAGGA+AGG 0.481881 7_3:+52907348 Msa1109370:CDS
TTATACCTCAAAAGATGTAA+TGG 0.487329 7_3:+52908600 Msa1109370:three_prime_UTR
CTCGTGCAGTTCTTTGCACA+AGG 0.487423 7_3:+52907166 Msa1109370:CDS
ATCCATATTCTGTATACATC+CGG 0.490554 7_3:-52907392 None:intergenic
ATGCCTGATGATGACTGTCC+TGG 0.497294 7_3:+52907413 Msa1109370:CDS
AGTCCAGGACAGTCATCATC+AGG 0.497520 7_3:-52907416 None:intergenic
TTATCTGCTATATAGAATGA+TGG 0.500312 7_3:+52908707 Msa1109370:three_prime_UTR
TGGAAAAGTTGGAGTGGAAC+TGG 0.501997 7_3:+52908251 Msa1109370:CDS
GAAAGAAACATGCAAAGAGT+TGG 0.505537 7_3:-52905750 None:intergenic
TAATATTTGTGAAGGAAGGA+AGG 0.505957 7_3:-52905796 None:intergenic
TCAAGAATCTTTAGCTGTGA+AGG 0.508129 7_3:+52907344 Msa1109370:CDS
TGTGGCGTGTTTGACGGTCA+TGG 0.512054 7_3:+52906647 Msa1109370:CDS
TTCCTCAATGTCTTATAAGA+AGG 0.512189 7_3:-52908628 None:intergenic
AAAATTTAAATTTAATGATG+AGG 0.514871 7_3:+52908520 Msa1109370:three_prime_UTR
GGAATAATATTTGTGAAGGA+AGG 0.516144 7_3:-52905800 None:intergenic
GTTGAAACCGAGGTGAATGA+TGG 0.518422 7_3:+52905920 Msa1109370:CDS
GATAGATAAGCTCTAATAAG+TGG 0.520986 7_3:+52908399 Msa1109370:three_prime_UTR
AAATGGATGATCATCTTGCT+CGG 0.523245 7_3:+52906882 Msa1109370:CDS
ATATATTATCAGGACTATGC+TGG 0.527095 7_3:+52906605 Msa1109370:intron
TAAAGCGCGCTGTTAAAGCC+TGG 0.527207 7_3:+52908058 Msa1109370:CDS
ATTTGTGAAGGAAGGAAGGG+TGG 0.530774 7_3:-52905792 None:intergenic
TTTGACGGTCATGGTCCTCT+AGG 0.530863 7_3:+52906656 Msa1109370:CDS
GAGCAATGGTTAGATTAAGA+GGG 0.539562 7_3:+52906014 Msa1109370:CDS
AGCACCTTAATGGAAGTTGA+AGG 0.541332 7_3:+52908370 Msa1109370:CDS
ATTCAATATCAAAACTTCCA+AGG 0.542466 7_3:+52908313 Msa1109370:CDS
AACATCCTTCCCATGAAGCA+AGG 0.545861 7_3:-52906841 None:intergenic
TGCAAAGAGTTGGAAGAGAC+AGG 0.547832 7_3:-52905740 None:intergenic
AATCTTTAGCTGTGAAGGAA+GGG 0.549092 7_3:+52907349 Msa1109370:CDS
GATTGCTTCAGATAGTTTCG+AGG 0.550025 7_3:-52906714 None:intergenic
TGTTGATGCGGTTACTATTG+TGG 0.552058 7_3:-52906811 None:intergenic
ATATCCCTTGCTTCATGGGA+AGG 0.553019 7_3:+52906836 Msa1109370:CDS
GAGTGGAACTGGATGAAGAA+TGG 0.555708 7_3:+52908262 Msa1109370:CDS
TGCCTTCTTATAAGACATTG+AGG 0.556688 7_3:+52908626 Msa1109370:three_prime_UTR
GTGGACATTGTCAAAATTGT+CGG 0.556822 7_3:-52906789 None:intergenic
GTTGCTCTTAGAGGAGGAGG+AGG 0.558281 7_3:+52905893 Msa1109370:CDS
TCCAGGATACTTATACATCC+AGG 0.559238 7_3:-52908076 None:intergenic
ACGTTGTCTTCCAAGAAACA+TGG 0.566773 7_3:+52905850 Msa1109370:exon
AATGGATGATCATCTTGCTC+GGG 0.566783 7_3:+52906883 Msa1109370:CDS
TATACACAACAAGGTATGAA+AGG 0.568417 7_3:+52906058 Msa1109370:CDS
AGACAGGAACATGGAAGAAG+TGG 0.568550 7_3:-52905724 None:intergenic
GCTCTTGACATAGCTAGTCC+AGG 0.570855 7_3:-52907431 None:intergenic
AATCAAAATGGCACAACAGA+AGG 0.572079 7_3:+52906733 Msa1109370:CDS
AGTTGGAAGAGACAGGAACA+TGG 0.574600 7_3:-52905733 None:intergenic
GCTGTCACGTATCAAAATGA+TGG 0.579947 7_3:+52905992 Msa1109370:CDS
TTTGTGAAGGAAGGAAGGGT+GGG 0.585543 7_3:-52905791 None:intergenic
GAATGGAATAATATTTGTGA+AGG 0.592762 7_3:-52905804 None:intergenic
AAGAATGGAAAGCTCTTGAA+GGG 0.594451 7_3:+52908277 Msa1109370:CDS
AGGAGGCAGAGTTGAAACCG+AGG 0.596046 7_3:+52905910 Msa1109370:CDS
GTATCAAAATGATGGAGCAA+TGG 0.597945 7_3:+52906000 Msa1109370:CDS
GATGTTGCTCTTAGAGGAGG+AGG 0.599534 7_3:+52905890 Msa1109370:CDS
CACGATGTTGCTCTTAGAGG+AGG 0.613102 7_3:+52905887 Msa1109370:CDS
ACATCCTTCCCATGAAGCAA+GGG 0.615226 7_3:-52906840 None:intergenic
ATTGCTTCAGATAGTTTCGA+GGG 0.615251 7_3:-52906713 None:intergenic
CAAGGGATATGTTGTTGATG+CGG 0.616397 7_3:-52906823 None:intergenic
AATATTTGTGAAGGAAGGAA+GGG 0.616617 7_3:-52905795 None:intergenic
AACACTGATAGCTATTGCAG+TGG 0.622757 7_3:+52906911 Msa1109370:CDS
AGATTCAATGACAGTTTGGG+AGG 0.625524 7_3:+52906090 Msa1109370:CDS
CGTTGTCTTCCAAGAAACAT+GGG 0.626913 7_3:+52905851 Msa1109370:exon
TCGTGCAGTTCTTTGCACAA+GGG 0.632091 7_3:+52907167 Msa1109370:CDS
ATATTCTCCATCATTCACCT+CGG 0.635736 7_3:-52905927 None:intergenic
GAAGAAGGCATGATCTTCTG+TGG 0.636004 7_3:+52906629 Msa1109370:CDS
ACACATCTGGTGATGCAATG+AGG 0.636186 7_3:-52907484 None:intergenic
TGCGAAACTTTGTGTCCTAG+AGG 0.636288 7_3:-52906671 None:intergenic
GTTTCAATGTATACACAACA+AGG 0.640908 7_3:+52906049 Msa1109370:CDS
AGGAACATGGAAGAAGTGGT+TGG 0.642642 7_3:-52905720 None:intergenic
TGATGCGGTTACTATTGTGG+TGG 0.653844 7_3:-52906808 None:intergenic
TGTTGCTGGAAAAGTTGGAG+TGG 0.662878 7_3:+52908245 Msa1109370:CDS
ATTGGGGTTGATATAAAACG+TGG 0.694024 7_3:+52908492 Msa1109370:three_prime_UTR
CTCCTCTAAGAGCAACATCG+TGG 0.712569 7_3:-52905886 None:intergenic
TGTCTTCCAAGAAACATGGG+TGG 0.731949 7_3:+52905854 Msa1109370:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTTAAATTTAATGATG+AGG + chr7_3:52908520-52908539 Msa1109370:three_prime_UTR 10.0%
!! CAAAAATTCATCAAAATTAA+TGG - chr7_3:52906187-52906206 None:intergenic 15.0%
!! AATGATTAATCAAATTGAAA+TGG - chr7_3:52906288-52906307 None:intergenic 15.0%
!! AATTATGTGATTTAATCTTA+TGG + chr7_3:52906505-52906524 Msa1109370:intron 15.0%
!! AAATTACAATTAGATTTGAT+AGG - chr7_3:52907300-52907319 None:intergenic 15.0%
!!! TAATTTTTCACTCATATTTA+GGG + chr7_3:52908561-52908580 Msa1109370:three_prime_UTR 15.0%
!!! GATGAATTTTTGTTTTTAGT+TGG + chr7_3:52906195-52906214 Msa1109370:intron 20.0%
!!! TTTTTTTCAATCAATTCTTG+TGG + chr7_3:52906228-52906247 Msa1109370:intron 20.0%
!!! TTTTTTCAATCAATTCTTGT+GGG + chr7_3:52906229-52906248 Msa1109370:intron 20.0%
!! AATCTTGACAATTACATTAT+TGG - chr7_3:52906362-52906381 None:intergenic 20.0%
!! TGGACTTTATTATTAGATTA+TGG + chr7_3:52906525-52906544 Msa1109370:intron 20.0%
!!! TAATTTTATCAACGTTTTTC+AGG + chr7_3:52907314-52907333 Msa1109370:intron 20.0%
!! ACCTTAGAATTAAAAATCAA+GGG - chr7_3:52907592-52907611 None:intergenic 20.0%
!! AACCTTAGAATTAAAAATCA+AGG - chr7_3:52907593-52907612 None:intergenic 20.0%
!!! TGTCATTTTTTTAACAGATA+TGG + chr7_3:52907959-52907978 Msa1109370:intron 20.0%
!!! GTCATTTTTTTAACAGATAT+GGG + chr7_3:52907960-52907979 Msa1109370:intron 20.0%
!! ACCTAAAATGTTGTATATTT+AGG + chr7_3:52908434-52908453 Msa1109370:three_prime_UTR 20.0%
!!! ACCTAAATATACAACATTTT+AGG - chr7_3:52908438-52908457 None:intergenic 20.0%
!!! TGAAGAATTTTAGAACTTAT+TGG + chr7_3:52908474-52908493 Msa1109370:three_prime_UTR 20.0%
!!! GAAGAATTTTAGAACTTATT+GGG + chr7_3:52908475-52908494 Msa1109370:three_prime_UTR 20.0%
!!! AAGAATTTTAGAACTTATTG+GGG + chr7_3:52908476-52908495 Msa1109370:three_prime_UTR 20.0%
!!! CTAATTTTTCACTCATATTT+AGG + chr7_3:52908560-52908579 Msa1109370:three_prime_UTR 20.0%
!!! AATTTTTCACTCATATTTAG+GGG + chr7_3:52908562-52908581 Msa1109370:three_prime_UTR 20.0%
!! GGTAAATAATTAGTTAATGA+TGG - chr7_3:52908654-52908673 None:intergenic 20.0%
! GAATGGAATAATATTTGTGA+AGG - chr7_3:52905807-52905826 None:intergenic 25.0%
!!! ATTTTAGTAGTAACTCCTAA+AGG - chr7_3:52906417-52906436 None:intergenic 25.0%
! TGGATATGCTATATATTATC+AGG + chr7_3:52906595-52906614 Msa1109370:intron 25.0%
! ATTAGCATCATAGTATTTGT+TGG - chr7_3:52906759-52906778 None:intergenic 25.0%
! TTACATAAGGTAAGAAATCA+TGG + chr7_3:52906979-52906998 Msa1109370:intron 25.0%
! TTGATATACCAATACTTACT+TGG - chr7_3:52907246-52907265 None:intergenic 25.0%
!! GACTTTTGTCTAAAAGATTA+TGG + chr7_3:52907461-52907480 Msa1109370:CDS 25.0%
!! ATTTTTCTGTAAAACACATC+TGG - chr7_3:52907500-52907519 None:intergenic 25.0%
!!! ACCCTTGATTTTTAATTCTA+AGG + chr7_3:52907588-52907607 Msa1109370:intron 25.0%
!! TTCAGTGTAATTTTATGTGT+CGG + chr7_3:52907719-52907738 Msa1109370:intron 25.0%
! ATCTGTTAAAAAAATGACAC+CGG - chr7_3:52907958-52907977 None:intergenic 25.0%
! GATTGAGAATGTGATAAAAT+AGG - chr7_3:52908150-52908169 None:intergenic 25.0%
! ATTCAATATCAAAACTTCCA+AGG + chr7_3:52908313-52908332 Msa1109370:CDS 25.0%
!! TTGAGGTATAAGCAAATTTT+TGG - chr7_3:52908591-52908610 None:intergenic 25.0%
! TTATACCTCAAAAGATGTAA+TGG + chr7_3:52908600-52908619 Msa1109370:three_prime_UTR 25.0%
!! GCTATTGATAACATTGATAA+TGG - chr7_3:52908675-52908694 None:intergenic 25.0%
AATATTTGTGAAGGAAGGAA+GGG - chr7_3:52905798-52905817 None:intergenic 30.0%
TAATATTTGTGAAGGAAGGA+AGG - chr7_3:52905799-52905818 None:intergenic 30.0%
GGAATAATATTTGTGAAGGA+AGG - chr7_3:52905803-52905822 None:intergenic 30.0%
GTTTCAATGTATACACAACA+AGG + chr7_3:52906049-52906068 Msa1109370:CDS 30.0%
TATACACAACAAGGTATGAA+AGG + chr7_3:52906058-52906077 Msa1109370:CDS 30.0%
CAACCATTTATGATACCTTT+AGG + chr7_3:52906399-52906418 Msa1109370:intron 30.0%
!! ACTCCTAAAGGTATCATAAA+TGG - chr7_3:52906405-52906424 None:intergenic 30.0%
AATTGATGAAATGTAGCATG+TGG + chr7_3:52906559-52906578 Msa1109370:intron 30.0%
ATATATTATCAGGACTATGC+TGG + chr7_3:52906605-52906624 Msa1109370:intron 30.0%
! ACTATCTGAAGCAATCAAAA+TGG + chr7_3:52906721-52906740 Msa1109370:CDS 30.0%
! TCTGAAATCGTTTGATGAAA+TGG + chr7_3:52906865-52906884 Msa1109370:CDS 30.0%
!! AGCTGTAGCTTTAATTAAAC+AGG + chr7_3:52906940-52906959 Msa1109370:CDS 30.0%
CTTACCTTATGTAAGTTACA+CGG - chr7_3:52906973-52906992 None:intergenic 30.0%
!! CAGTTGATAGTTGGAAATTT+GGG + chr7_3:52907138-52907157 Msa1109370:CDS 30.0%
! AAATCAACAGTAAGTTGAAC+AGG - chr7_3:52907210-52907229 None:intergenic 30.0%
!! ACTTACTGTTGATTTGAAAC+CGG + chr7_3:52907215-52907234 Msa1109370:CDS 30.0%
CAATACTTACTTGGAATATC+CGG - chr7_3:52907237-52907256 None:intergenic 30.0%
ATCCATATTCTGTATACATC+CGG - chr7_3:52907395-52907414 None:intergenic 30.0%
! TTTTAGACAAAAGTCTCCAA+AGG - chr7_3:52907456-52907475 None:intergenic 30.0%
AACAACAAATTCATCTTGCT+TGG - chr7_3:52907525-52907544 None:intergenic 30.0%
!!! GCAAGATGAATTTGTTGTTT+TGG + chr7_3:52907526-52907545 Msa1109370:CDS 30.0%
! TACTTATTGACTATGAAGCA+CGG + chr7_3:52907629-52907648 Msa1109370:intron 30.0%
TTTCAATAAGCTATGAAGCA+CGG - chr7_3:52907808-52907827 None:intergenic 30.0%
ATCATCAAGAAACAAGCATA+TGG - chr7_3:52908124-52908143 None:intergenic 30.0%
! GATAGATAAGCTCTAATAAG+TGG + chr7_3:52908399-52908418 Msa1109370:three_prime_UTR 30.0%
ATTTAGGTGCAAAAAAGATG+AGG + chr7_3:52908450-52908469 Msa1109370:three_prime_UTR 30.0%
TTCCTCAATGTCTTATAAGA+AGG - chr7_3:52908631-52908650 None:intergenic 30.0%
GAAAGAAACATGCAAAGAGT+TGG - chr7_3:52905753-52905772 None:intergenic 35.0%
GAGAAGAAAAATGGATGGAA+TGG - chr7_3:52905824-52905843 None:intergenic 35.0%
ATATTCTCCATCATTCACCT+CGG - chr7_3:52905930-52905949 None:intergenic 35.0%
! GTATCAAAATGATGGAGCAA+TGG + chr7_3:52906000-52906019 Msa1109370:CDS 35.0%
GAGCAATGGTTAGATTAAGA+GGG + chr7_3:52906014-52906033 Msa1109370:CDS 35.0%
ACCAAGATTCAATGACAGTT+TGG + chr7_3:52906086-52906105 Msa1109370:CDS 35.0%
CCAAGATTCAATGACAGTTT+GGG + chr7_3:52906087-52906106 Msa1109370:CDS 35.0%
! CTTCATTGATAGCATTCTCT+TGG + chr7_3:52906438-52906457 Msa1109370:intron 35.0%
TTGCTTGAATCATACAGCTA+AGG - chr7_3:52906476-52906495 None:intergenic 35.0%
CATGTGGCTATGATTAATGT+TGG + chr7_3:52906575-52906594 Msa1109370:intron 35.0%
ATTGCTTCAGATAGTTTCGA+GGG - chr7_3:52906716-52906735 None:intergenic 35.0%
AATCAAAATGGCACAACAGA+AGG + chr7_3:52906733-52906752 Msa1109370:CDS 35.0%
GTGGACATTGTCAAAATTGT+CGG - chr7_3:52906792-52906811 None:intergenic 35.0%
AAATGGATGATCATCTTGCT+CGG + chr7_3:52906882-52906901 Msa1109370:CDS 35.0%
GTAACCGTGTAACTTACATA+AGG + chr7_3:52906966-52906985 Msa1109370:intron 35.0%
CGTTTACCCTATAAATTGCA+GGG + chr7_3:52907111-52907130 Msa1109370:intron 35.0%
CCAAATTTCCAACTATCAAC+TGG - chr7_3:52907140-52907159 None:intergenic 35.0%
!! CCAGTTGATAGTTGGAAATT+TGG + chr7_3:52907137-52907156 Msa1109370:CDS 35.0%
CGGATATTCCAAGTAAGTAT+TGG + chr7_3:52907235-52907254 Msa1109370:intron 35.0%
TCAAGAATCTTTAGCTGTGA+AGG + chr7_3:52907344-52907363 Msa1109370:CDS 35.0%
AATCTTTAGCTGTGAAGGAA+GGG + chr7_3:52907349-52907368 Msa1109370:CDS 35.0%
AACCGGATGTATACAGAATA+TGG + chr7_3:52907390-52907409 Msa1109370:CDS 35.0%
!!! TTTGTTGTTTTGGCAACTGA+TGG + chr7_3:52907536-52907555 Msa1109370:CDS 35.0%
!!! TTGTTGTTTTGGCAACTGAT+GGG + chr7_3:52907537-52907556 Msa1109370:CDS 35.0%
TTGTGTATCCACAGAAAGAA+AGG - chr7_3:52907851-52907870 None:intergenic 35.0%
!!! ACACTGAAGGTGTTTTAAGA+AGG - chr7_3:52907919-52907938 None:intergenic 35.0%
AAGAATGGAAAGCTCTTGAA+GGG + chr7_3:52908277-52908296 Msa1109370:CDS 35.0%
CAATCATCTAAGCACCTTAA+TGG + chr7_3:52908360-52908379 Msa1109370:CDS 35.0%
AATGCCTTCAACTTCCATTA+AGG - chr7_3:52908377-52908396 None:intergenic 35.0%
!! ATTGGGGTTGATATAAAACG+TGG + chr7_3:52908492-52908511 Msa1109370:three_prime_UTR 35.0%
! CATAGCCATTACATCTTTTG+AGG - chr7_3:52908608-52908627 None:intergenic 35.0%
TGCCTTCTTATAAGACATTG+AGG + chr7_3:52908626-52908645 Msa1109370:three_prime_UTR 35.0%
GCTTGGAGAAGAAAAATGGA+TGG - chr7_3:52905829-52905848 None:intergenic 40.0%
CGTTGCTTGGAGAAGAAAAA+TGG - chr7_3:52905833-52905852 None:intergenic 40.0%
ACGTTGTCTTCCAAGAAACA+TGG + chr7_3:52905850-52905869 Msa1109370:exon 40.0%
CGTTGTCTTCCAAGAAACAT+GGG + chr7_3:52905851-52905870 Msa1109370:exon 40.0%
GCTGTCACGTATCAAAATGA+TGG + chr7_3:52905992-52906011 Msa1109370:CDS 40.0%
GGAGCAATGGTTAGATTAAG+AGG + chr7_3:52906013-52906032 Msa1109370:CDS 40.0%
CCCAAACTGTCATTGAATCT+TGG - chr7_3:52906090-52906109 None:intergenic 40.0%
AGATTCAATGACAGTTTGGG+AGG + chr7_3:52906090-52906109 Msa1109370:CDS 40.0%
GATTGCTTCAGATAGTTTCG+AGG - chr7_3:52906717-52906736 None:intergenic 40.0%
TGTTGATGCGGTTACTATTG+TGG - chr7_3:52906814-52906833 None:intergenic 40.0%
CAAGGGATATGTTGTTGATG+CGG - chr7_3:52906826-52906845 None:intergenic 40.0%
ACAACATATCCCTTGCTTCA+TGG + chr7_3:52906831-52906850 Msa1109370:CDS 40.0%
CAACATATCCCTTGCTTCAT+GGG + chr7_3:52906832-52906851 Msa1109370:CDS 40.0%
AATGGATGATCATCTTGCTC+GGG + chr7_3:52906883-52906902 Msa1109370:CDS 40.0%
AACACTGATAGCTATTGCAG+TGG + chr7_3:52906911-52906930 Msa1109370:CDS 40.0%
GCGTTTACCCTATAAATTGC+AGG + chr7_3:52907110-52907129 Msa1109370:intron 40.0%
TGGTCACCCTGCAATTTATA+GGG - chr7_3:52907120-52907139 None:intergenic 40.0%
GAATCTTTAGCTGTGAAGGA+AGG + chr7_3:52907348-52907367 Msa1109370:CDS 40.0%
!!! TGTTGTTTTGGCAACTGATG+GGG + chr7_3:52907538-52907557 Msa1109370:CDS 40.0%
TTGACTATGAAGCACGGATA+CGG + chr7_3:52907635-52907654 Msa1109370:intron 40.0%
ACTCTGATCCTTTCTTTCTG+TGG + chr7_3:52907840-52907859 Msa1109370:intron 40.0%
TGTCTGTTAGCTCACAAAAC+CGG + chr7_3:52907936-52907955 Msa1109370:intron 40.0%
!! TTTGCTGCTGTTGACTTTCT+TGG - chr7_3:52908030-52908049 None:intergenic 40.0%
TCCAGGATACTTATACATCC+AGG - chr7_3:52908079-52908098 None:intergenic 40.0%
! CAATCGTCTATTTTCGATCC+AGG - chr7_3:52908096-52908115 None:intergenic 40.0%
GAAGACAATGAAACTGTTGC+TGG + chr7_3:52908231-52908250 Msa1109370:CDS 40.0%
GAAACTGTTGCTGGAAAAGT+TGG + chr7_3:52908240-52908259 Msa1109370:CDS 40.0%
GAAGAATGGAAAGCTCTTGA+AGG + chr7_3:52908276-52908295 Msa1109370:CDS 40.0%
!! CTCATATTTCTAGCAAGCCT+TGG - chr7_3:52908333-52908352 None:intergenic 40.0%
AGCACCTTAATGGAAGTTGA+AGG + chr7_3:52908370-52908389 Msa1109370:CDS 40.0%
AGGAACATGGAAGAAGTGGT+TGG - chr7_3:52905723-52905742 None:intergenic 45.0%
AGACAGGAACATGGAAGAAG+TGG - chr7_3:52905727-52905746 None:intergenic 45.0%
AGTTGGAAGAGACAGGAACA+TGG - chr7_3:52905736-52905755 None:intergenic 45.0%
TGCAAAGAGTTGGAAGAGAC+AGG - chr7_3:52905743-52905762 None:intergenic 45.0%
TTTGTGAAGGAAGGAAGGGT+GGG - chr7_3:52905794-52905813 None:intergenic 45.0%
ATTTGTGAAGGAAGGAAGGG+TGG - chr7_3:52905795-52905814 None:intergenic 45.0%
TCTTGGAAGACAACGTTGCT+TGG - chr7_3:52905846-52905865 None:intergenic 45.0%
TGTCTTCCAAGAAACATGGG+TGG + chr7_3:52905854-52905873 Msa1109370:exon 45.0%
GTTGAAACCGAGGTGAATGA+TGG + chr7_3:52905920-52905939 Msa1109370:CDS 45.0%
! GAAGAAGGCATGATCTTCTG+TGG + chr7_3:52906629-52906648 Msa1109370:CDS 45.0%
ATCTTCTGTGGCGTGTTTGA+CGG + chr7_3:52906641-52906660 Msa1109370:CDS 45.0%
TGCGAAACTTTGTGTCCTAG+AGG - chr7_3:52906674-52906693 None:intergenic 45.0%
TGATGCGGTTACTATTGTGG+TGG - chr7_3:52906811-52906830 None:intergenic 45.0%
ATATCCCTTGCTTCATGGGA+AGG + chr7_3:52906836-52906855 Msa1109370:CDS 45.0%
ACATCCTTCCCATGAAGCAA+GGG - chr7_3:52906843-52906862 None:intergenic 45.0%
AACATCCTTCCCATGAAGCA+AGG - chr7_3:52906844-52906863 None:intergenic 45.0%
TGTCTCTGTGATTGCAGTTG+AGG - chr7_3:52907059-52907078 None:intergenic 45.0%
CTGGTCACCCTGCAATTTAT+AGG - chr7_3:52907121-52907140 None:intergenic 45.0%
TCGTGCAGTTCTTTGCACAA+GGG + chr7_3:52907167-52907186 Msa1109370:CDS 45.0%
CTAGCTATGTCAAGAGCCTT+TGG + chr7_3:52907437-52907456 Msa1109370:CDS 45.0%
! ACACATCTGGTGATGCAATG+AGG - chr7_3:52907487-52907506 None:intergenic 45.0%
!! TTTATGTGTCGGTGTCGTGT+CGG + chr7_3:52907730-52907749 Msa1109370:intron 45.0%
ACATGACACGTGTCTGACAT+GGG + chr7_3:52907759-52907778 Msa1109370:intron 45.0%
TATGAAGCACGGAAACTCCT+GGG - chr7_3:52907797-52907816 None:intergenic 45.0%
GAGTTTGAACCATGCATGCA+TGG + chr7_3:52907889-52907908 Msa1109370:intron 45.0%
TGTGAGCTAACAGACACTGA+AGG - chr7_3:52907932-52907951 None:intergenic 45.0%
GCCTGGATGTATAAGTATCC+TGG + chr7_3:52908075-52908094 Msa1109370:CDS 45.0%
TGTTGCTGGAAAAGTTGGAG+TGG + chr7_3:52908245-52908264 Msa1109370:CDS 45.0%
TGGAAAAGTTGGAGTGGAAC+TGG + chr7_3:52908251-52908270 Msa1109370:CDS 45.0%
GAGTGGAACTGGATGAAGAA+TGG + chr7_3:52908262-52908281 Msa1109370:CDS 45.0%
GGAAGGAAGGGTGGGAATTA+AGG - chr7_3:52905786-52905805 None:intergenic 50.0%
CAACAGCCACCCATGTTTCT+TGG - chr7_3:52905863-52905882 None:intergenic 50.0%
AGCCACGATGTTGCTCTTAG+AGG + chr7_3:52905884-52905903 Msa1109370:CDS 50.0%
! CTCCTCTAAGAGCAACATCG+TGG - chr7_3:52905889-52905908 None:intergenic 50.0%
CACGATGTTGCTCTTAGAGG+AGG + chr7_3:52905887-52905906 Msa1109370:CDS 50.0%
GATGTTGCTCTTAGAGGAGG+AGG + chr7_3:52905890-52905909 Msa1109370:CDS 50.0%
CAGGACTATGCTGGAGAAGA+AGG + chr7_3:52906614-52906633 Msa1109370:intron 50.0%
TTTGACGGTCATGGTCCTCT+AGG + chr7_3:52906656-52906675 Msa1109370:CDS 50.0%
!! CAGGGTGACCAGTTGATAGT+TGG + chr7_3:52907129-52907148 Msa1109370:intron 50.0%
CTCGTGCAGTTCTTTGCACA+AGG + chr7_3:52907166-52907185 Msa1109370:CDS 50.0%
TTTCGCTGCAGACGAAGAAC+CGG + chr7_3:52907373-52907392 Msa1109370:CDS 50.0%
! ATGCCTGATGATGACTGTCC+TGG + chr7_3:52907413-52907432 Msa1109370:CDS 50.0%
AGTCCAGGACAGTCATCATC+AGG - chr7_3:52907419-52907438 None:intergenic 50.0%
GCTCTTGACATAGCTAGTCC+AGG - chr7_3:52907434-52907453 None:intergenic 50.0%
ATGAAGCACGGATACGGACA+TGG + chr7_3:52907641-52907660 Msa1109370:intron 50.0%
GTCAGTGTTTGTGTCGTGTC+CGG - chr7_3:52907670-52907689 None:intergenic 50.0%
GACATGACACGTGTCTGACA+TGG + chr7_3:52907758-52907777 Msa1109370:intron 50.0%
CATGACACGTGTCTGACATG+GGG + chr7_3:52907760-52907779 Msa1109370:intron 50.0%
CTATGAAGCACGGAAACTCC+TGG - chr7_3:52907798-52907817 None:intergenic 50.0%
GAAGGAGATCCATGCATGCA+TGG - chr7_3:52907901-52907920 None:intergenic 50.0%
TAAAGCGCGCTGTTAAAGCC+TGG + chr7_3:52908058-52908077 Msa1109370:CDS 50.0%
GTTGCTCTTAGAGGAGGAGG+AGG + chr7_3:52905893-52905912 Msa1109370:CDS 55.0%
AGGAGGCAGAGTTGAAACCG+AGG + chr7_3:52905910-52905929 Msa1109370:CDS 55.0%
TGTGGCGTGTTTGACGGTCA+TGG + chr7_3:52906647-52906666 Msa1109370:CDS 55.0%
ACGGATACGGACATGGACAC+CGG + chr7_3:52907648-52907667 Msa1109370:intron 55.0%
GCACGGAAACTCCTGGGATA+AGG - chr7_3:52907791-52907810 None:intergenic 55.0%
ATGGGGACACGCCTTATCCC+AGG + chr7_3:52907777-52907796 Msa1109370:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 52905719 52908728 52905719 ID=Msa1109370;Name=Msa1109370
chr7_3 mRNA 52905719 52908728 52905719 ID=Msa1109370-mRNA-1;Parent=Msa1109370;Name=Msa1109370-mRNA-1;_AED=0.04;_eAED=0.04;_QI=150|1|1|1|1|1|5|339|446
chr7_3 exon 52905719 52906111 52905719 ID=Msa1109370-mRNA-1:exon:11143;Parent=Msa1109370-mRNA-1
chr7_3 exon 52906617 52906961 52906617 ID=Msa1109370-mRNA-1:exon:11144;Parent=Msa1109370-mRNA-1
chr7_3 exon 52907132 52907246 52907132 ID=Msa1109370-mRNA-1:exon:11145;Parent=Msa1109370-mRNA-1
chr7_3 exon 52907336 52907559 52907336 ID=Msa1109370-mRNA-1:exon:11146;Parent=Msa1109370-mRNA-1
chr7_3 exon 52907976 52908728 52907976 ID=Msa1109370-mRNA-1:exon:11147;Parent=Msa1109370-mRNA-1
chr7_3 five_prime_UTR 52905719 52905868 52905719 ID=Msa1109370-mRNA-1:five_prime_utr;Parent=Msa1109370-mRNA-1
chr7_3 CDS 52905869 52906111 52905869 ID=Msa1109370-mRNA-1:cds;Parent=Msa1109370-mRNA-1
chr7_3 CDS 52906617 52906961 52906617 ID=Msa1109370-mRNA-1:cds;Parent=Msa1109370-mRNA-1
chr7_3 CDS 52907132 52907246 52907132 ID=Msa1109370-mRNA-1:cds;Parent=Msa1109370-mRNA-1
chr7_3 CDS 52907336 52907559 52907336 ID=Msa1109370-mRNA-1:cds;Parent=Msa1109370-mRNA-1
chr7_3 CDS 52907976 52908389 52907976 ID=Msa1109370-mRNA-1:cds;Parent=Msa1109370-mRNA-1
chr7_3 three_prime_UTR 52908390 52908728 52908390 ID=Msa1109370-mRNA-1:three_prime_utr;Parent=Msa1109370-mRNA-1
Gene Sequence

>Msa1109370

ATGGGTGGCTGTTGCAGCCACGATGTTGCTCTTAGAGGAGGAGGAGGCAGAGTTGAAACCGAGGTGAATGATGGAGAATATGAATATGATGATAGTGAAGATAATAATATTAATAATAATGATGCTGTCACGTATCAAAATGATGGAGCAATGGTTAGATTAAGAGGGTTTTCTAAGTTTGTTTCAATGTATACACAACAAGGTATGAAAGGTGTTAACCAAGATTCAATGACAGTTTGGGAGGACTATGCTGGAGAAGAAGGCATGATCTTCTGTGGCGTGTTTGACGGTCATGGTCCTCTAGGACACAAAGTTTCGCAATTTATTCGCGACAATCTACCCTCGAAACTATCTGAAGCAATCAAAATGGCACAACAGAAGGCCAACAAATACTATGATGCTAATGACGCAGATACCGACAATTTTGACAATGTCCACCACAATAGTAACCGCATCAACAACATATCCCTTGCTTCATGGGAAGGATGTTTTCTGAAATCGTTTGATGAAATGGATGATCATCTTGCTCGGGAAGTTAACACTGATAGCTATTGCAGTGGTTGCACAGCTGTAGCTTTAATTAAACAGGGTGACCAGTTGATAGTTGGAAATTTGGGCGATTCTCGTGCAGTTCTTTGCACAAGGGATAGAGATGAACTTATTCCTGTTCAACTTACTGTTGATTTGAAACCGGATATTCCAAGTGAAGCTTCAAGAATCTTTAGCTGTGAAGGAAGGGTTTTCGCTGCAGACGAAGAACCGGATGTATACAGAATATGGATGCCTGATGATGACTGTCCTGGACTAGCTATGTCAAGAGCCTTTGGAGACTTTTGTCTAAAAGATTATGGCCTCATTGCATCACCAGATGTGTTTTACAGAAAAATTACCAAGCAAGATGAATTTGTTGTTTTGGCAACTGATGGGATATGGGATGTTCTGACAAACAATGAAGTAATAAACATAGTTGCTTCAGCGCCAAGAAAGTCAACAGCAGCAAAGATGTTAGTAAAGCGCGCTGTTAAAGCCTGGATGTATAAGTATCCTGGATCGAAAATAGACGATTGTGCAGCCATATGCTTGTTTCTTGATGATCAACCTATTTTATCACATTCTCAATCGAGTTTCAAGCACTCTAAAAGTCGACATCGTCGCAGTAAGCACTCTAAATCACATCGAAACGAAGACAATGAAACTGTTGCTGGAAAAGTTGGAGTGGAACTGGATGAAGAATGGAAAGCTCTTGAAGGGTTAGCTAGAGCAAATTCAATATCAAAACTTCCAAGGCTTGCTAGAAATATGAGTAAAAGACAATCATCTAAGCACCTTAATGGAAGTTGA
Protein sequence

>Msa1109370

MGGCCSHDVALRGGGGRVETEVNDGEYEYDDSEDNNINNNDAVTYQNDGAMVRLRGFSKFVSMYTQQGMKGVNQDSMTVWEDYAGEEGMIFCGVFDGHGPLGHKVSQFIRDNLPSKLSEAIKMAQQKANKYYDANDADTDNFDNVHHNSNRINNISLASWEGCFLKSFDEMDDHLAREVNTDSYCSGCTAVALIKQGDQLIVGNLGDSRAVLCTRDRDELIPVQLTVDLKPDIPSEASRIFSCEGRVFAADEEPDVYRIWMPDDDCPGLAMSRAFGDFCLKDYGLIASPDVFYRKITKQDEFVVLATDGIWDVLTNNEVINIVASAPRKSTAAKMLVKRAVKAWMYKYPGSKIDDCAAICLFLDDQPILSHSQSSFKHSKSRHRRSKHSKSHRNEDNETVAGKVGVELDEEWKALEGLARANSISKLPRLARNMSKRQSSKHLNGS*