AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1153150

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1153150 MtrunA17_Chr7g0243571 94.866 448 20 2 1 446 1 447 0.0 852
Msa1153150 MtrunA17_Chr4g0004971 57.143 371 133 7 1 368 1 348 4.66e-147 423
Msa1153150 MtrunA17_Chr7g0221691 45.283 424 203 7 1 411 42 449 3.03e-119 355
Msa1153150 MtrunA17_Chr7g0249421 45.688 429 184 8 52 431 57 485 5.54e-119 357
Msa1153150 MtrunA17_Chr4g0022171 43.099 413 196 9 56 435 62 468 5.86e-114 342
Msa1153150 MtrunA17_Chr2g0324061 44.526 411 191 8 56 431 56 464 1.54e-109 331
Msa1153150 MtrunA17_Chr1g0192421 44.340 318 164 3 47 363 45 350 6.67e-99 300
Msa1153150 MtrunA17_Chr7g0272061 44.923 325 172 3 52 374 52 371 1.28e-98 300
Msa1153150 MtrunA17_Chr4g0067711 46.602 309 152 4 60 367 60 356 1.49e-97 297
Msa1153150 MtrunA17_Chr2g0295401 46.129 310 152 4 60 367 61 357 1.14e-94 289
Msa1153150 MtrunA17_Chr8g0342431 45.954 346 133 6 52 363 47 372 4.62e-92 284
Msa1153150 MtrunA17_Chr1g0151781 44.984 309 157 4 59 367 37 332 4.29e-89 275
Msa1153150 MtrunA17_Chr4g0066371 27.010 311 167 4 60 344 47 323 6.21e-32 125
Msa1153150 MtrunA17_Chr6g0486661 26.647 334 186 10 64 374 97 394 5.92e-27 114
Msa1153150 MtrunA17_Chr2g0286951 26.603 312 172 5 57 345 48 325 1.38e-26 110
Msa1153150 MtrunA17_Chr5g0396731 31.481 270 137 8 60 325 75 300 5.52e-25 105
Msa1153150 MtrunA17_Chr3g0136711 29.123 285 144 8 91 374 65 292 1.18e-24 103
Msa1153150 MtrunA17_Chr3g0135961 31.469 286 139 13 71 353 269 500 5.22e-24 104
Msa1153150 MtrunA17_Chr1g0150451 28.727 275 139 7 93 366 110 328 2.44e-23 100
Msa1153150 MtrunA17_Chr1g0150781 34.188 234 117 10 91 322 290 488 1.08e-22 100
Msa1153150 MtrunA17_Chr3g0112291 30.952 252 136 9 74 323 106 321 1.37e-22 99.0
Msa1153150 MtrunA17_Chr4g0070871 34.483 232 113 9 91 322 253 445 5.95e-21 95.5
Msa1153150 MtrunA17_Chr1g0212961 27.857 280 137 11 91 368 126 342 1.80e-20 92.4
Msa1153150 MtrunA17_Chr8g0389921 31.466 232 110 8 91 319 198 383 7.92e-20 91.7
Msa1153150 MtrunA17_Chr2g0299981 30.894 246 116 10 91 318 267 476 8.31e-20 92.0
Msa1153150 MtrunA17_Chr2g0293811 27.508 309 153 11 61 342 53 317 1.53e-18 87.0
Msa1153150 MtrunA17_Chr5g0435721 28.517 263 126 7 74 323 206 419 1.94e-18 87.4
Msa1153150 MtrunA17_Chr6g0483411 28.704 216 119 6 164 363 122 318 1.18e-17 83.6
Msa1153150 MtrunA17_Chr4g0051661 37.654 162 85 6 180 340 235 381 1.30e-17 84.3
Msa1153150 MtrunA17_Chr1g0194191 28.862 246 123 9 91 329 118 318 4.75e-17 82.8
Msa1153150 MtrunA17_Chr3g0105351 26.398 322 175 11 1 322 15 274 7.45e-17 81.3
Msa1153150 MtrunA17_Chr5g0430481 28.352 261 136 9 62 322 125 334 1.14e-16 81.3
Msa1153150 MtrunA17_Chr3g0105371 29.119 261 134 10 62 322 89 298 2.81e-16 79.7
Msa1153150 MtrunA17_Chr1g0171571 25.914 301 175 10 64 363 391 644 3.72e-16 80.9
Msa1153150 MtrunA17_Chr2g0317021 37.179 156 82 6 187 341 177 317 3.77e-16 79.3
Msa1153150 MtrunA17_Chr3g0115851 36.943 157 83 6 187 342 126 267 1.55e-15 76.6
Msa1153150 MtrunA17_Chr4g0050381 35.256 156 85 6 187 341 121 261 2.37e-15 76.3
Msa1153150 MtrunA17_Chr8g0360351 27.797 295 153 12 55 341 24 266 2.47e-15 76.3
Msa1153150 MtrunA17_Chr7g0256751 25.464 377 200 15 57 391 40 377 3.07e-15 77.4
Msa1153150 MtrunA17_Chr3g0136811 25.077 323 190 10 45 341 13 309 3.70e-15 76.6
Msa1153150 MtrunA17_Chr1g0158781 30.472 233 115 8 91 323 145 330 8.92e-15 75.9
Msa1153150 MtrunA17_Chr2g0279151 33.758 157 88 6 187 342 125 266 2.40e-14 73.2
Msa1153150 MtrunA17_Chr5g0407161 27.419 248 102 7 91 323 124 308 5.08e-14 73.6
Msa1153150 MtrunA17_Chr5g0426141 35.669 157 85 6 187 342 126 267 5.52e-14 72.0
Msa1153150 MtrunA17_Chr3g0138281 26.761 284 146 10 91 367 121 349 1.44e-13 72.0
Msa1153150 MtrunA17_Chr3g0126511 26.667 240 106 9 93 322 127 306 2.56e-13 71.2
Msa1153150 MtrunA17_Chr7g0238501 24.653 288 157 9 63 325 239 491 1.17e-12 69.7
Msa1153150 MtrunA17_Chr4g0001761 27.863 262 144 10 86 323 47 287 2.84e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1153150 AT5G01700.2 50.402 373 147 4 1 367 1 341 1.27e-129 380
Msa1153150 AT5G01700.1 52.787 305 131 1 63 367 1 292 8.76e-120 353
Msa1153150 AT1G16220.1 43.780 418 192 6 56 430 60 477 9.75e-120 358
Msa1153150 AT1G79630.1 42.757 428 192 6 56 430 63 490 2.94e-119 358
Msa1153150 AT1G79630.8 42.757 428 192 6 56 430 59 486 3.64e-119 357
Msa1153150 AT5G36250.1 48.333 360 168 6 38 383 46 401 2.70e-117 351
Msa1153150 AT1G03590.1 44.279 402 195 6 56 430 56 455 9.85e-114 342
Msa1153150 AT5G36250.2 46.524 374 168 7 38 383 46 415 3.57e-113 340
Msa1153150 AT4G03415.1 45.025 402 189 8 63 436 70 467 4.59e-112 338
Msa1153150 AT4G03415.3 45.025 402 189 8 63 436 70 467 4.59e-112 338
Msa1153150 AT4G03415.2 45.025 402 189 8 63 436 70 467 4.59e-112 338
Msa1153150 AT3G02750.2 44.342 433 183 7 54 430 58 488 1.14e-111 338
Msa1153150 AT3G02750.1 44.342 433 183 7 54 430 58 488 1.14e-111 338
Msa1153150 AT1G79630.2 41.687 403 182 6 81 430 18 420 7.04e-108 326
Msa1153150 AT1G79630.7 41.687 403 182 6 81 430 18 420 7.04e-108 326
Msa1153150 AT3G02750.3 40.881 477 188 9 46 431 51 524 6.63e-104 319
Msa1153150 AT1G79630.6 48.973 292 124 4 164 430 89 380 5.25e-96 294
Msa1153150 AT1G79630.3 48.973 292 124 4 164 430 89 380 5.25e-96 294
Msa1153150 AT1G79630.4 48.973 292 124 4 164 430 89 380 5.25e-96 294
Msa1153150 AT1G79630.5 48.973 292 124 4 164 430 89 380 5.25e-96 294
Msa1153150 AT3G05640.2 44.337 309 154 3 56 363 58 349 1.19e-93 287
Msa1153150 AT3G05640.1 44.337 309 154 3 56 363 58 349 1.19e-93 287
Msa1153150 AT3G05640.3 44.337 309 154 3 56 363 58 349 1.19e-93 287
Msa1153150 AT5G27930.1 43.450 313 163 4 52 362 53 353 6.66e-93 286
Msa1153150 AT5G27930.2 43.450 313 163 4 52 362 53 353 6.66e-93 286
Msa1153150 AT3G16800.2 41.026 351 182 5 16 363 20 348 4.71e-88 272
Msa1153150 AT3G16800.1 41.026 351 182 5 16 363 20 348 4.71e-88 272
Msa1153150 AT3G16800.3 41.026 351 182 5 16 363 20 348 4.71e-88 272
Msa1153150 AT5G36250.3 46.897 290 139 5 38 313 46 334 1.23e-87 271
Msa1153150 AT3G16800.4 43.956 273 130 4 94 363 1 253 4.18e-74 233
Msa1153150 AT3G16800.6 43.956 273 130 4 94 363 1 253 4.18e-74 233
Msa1153150 AT5G27930.3 42.529 261 136 4 52 310 53 301 1.96e-73 234
Msa1153150 AT5G26010.1 40.708 339 173 6 33 367 16 330 1.15e-72 232
Msa1153150 AT4G32950.1 41.042 307 148 5 62 366 44 319 6.28e-71 227
Msa1153150 AT4G32950.2 41.833 251 113 5 62 310 44 263 1.91e-53 180
Msa1153150 AT3G16800.5 34.498 229 125 5 16 241 20 226 1.78e-35 131
Msa1153150 AT3G06270.1 27.645 293 156 6 73 345 70 326 6.30e-30 119
Msa1153150 AT2G20050.1 26.398 322 177 8 64 364 116 398 7.77e-29 120
Msa1153150 AT2G20050.2 26.398 322 177 8 64 364 116 398 8.13e-29 120
Msa1153150 AT4G31750.2 27.719 285 146 8 85 366 56 283 5.25e-23 99.4
Msa1153150 AT4G31750.1 27.719 285 146 8 85 366 56 283 7.75e-23 99.0
Msa1153150 AT4G31750.3 27.719 285 146 8 85 366 56 283 7.75e-23 99.0
Msa1153150 AT5G24940.1 30.159 252 126 6 91 342 64 265 1.62e-22 100
Msa1153150 AT1G72770.4 33.610 241 119 9 91 322 238 446 5.19e-22 99.0
Msa1153150 AT1G72770.1 33.610 241 119 9 91 322 238 446 5.19e-22 99.0
Msa1153150 AT1G72770.3 33.610 241 119 9 91 322 238 446 5.19e-22 99.0
Msa1153150 AT5G10740.1 30.040 253 125 7 91 342 64 265 2.26e-21 95.5
Msa1153150 AT5G10740.2 30.040 253 125 7 91 342 64 265 2.26e-21 95.5
Msa1153150 AT1G07430.1 37.288 177 83 5 160 323 193 354 1.89e-20 93.6
Msa1153150 AT5G59220.1 31.452 248 108 9 88 323 145 342 1.39e-19 90.9
Msa1153150 AT5G57050.1 31.034 232 120 7 91 322 160 351 1.61e-19 90.9
Msa1153150 AT5G57050.2 31.034 232 120 7 91 322 120 311 1.76e-19 90.1
Msa1153150 AT1G17550.1 29.752 242 120 8 91 318 237 442 4.88e-19 89.7
Msa1153150 AT1G17550.2 29.752 242 120 8 91 318 237 442 4.88e-19 89.7
Msa1153150 AT4G26080.1 32.895 228 111 9 91 318 172 357 1.14e-18 88.2
Msa1153150 AT1G67820.2 26.646 319 178 9 63 380 87 350 1.88e-18 87.4
Msa1153150 AT1G67820.1 26.332 319 179 9 63 380 123 386 2.67e-18 87.4
Msa1153150 AT5G51760.2 33.663 202 107 6 153 342 155 341 7.85e-18 85.5
Msa1153150 AT5G51760.1 33.663 202 107 6 153 342 185 371 9.77e-18 85.5
Msa1153150 AT2G34740.1 32.161 199 112 8 166 363 159 335 1.03e-17 84.3
Msa1153150 AT3G11410.1 35.326 184 83 6 160 322 173 341 1.24e-17 85.1
Msa1153150 AT4G28400.3 29.730 296 146 14 55 341 3 245 1.24e-17 82.8
Msa1153150 AT1G43900.1 30.279 251 122 9 89 338 152 350 1.57e-17 84.3
Msa1153150 AT5G02760.1 25.153 326 162 10 91 375 72 356 2.02e-17 84.0
Msa1153150 AT4G28400.1 29.730 296 146 14 55 341 25 267 2.66e-17 82.4
Msa1153150 AT2G40180.1 28.522 291 153 10 60 342 128 371 4.06e-17 83.2
Msa1153150 AT3G17250.1 26.877 253 127 7 89 329 156 362 1.03e-16 82.4
Msa1153150 AT2G29380.1 35.165 182 77 9 160 322 150 309 1.05e-16 81.6
Msa1153150 AT1G07160.1 28.736 261 137 9 62 322 124 335 1.56e-16 81.3
Msa1153150 AT1G78200.5 32.044 181 109 5 163 342 56 223 2.35e-16 78.6
Msa1153150 AT1G78200.4 32.044 181 109 5 163 342 56 223 2.35e-16 78.6
Msa1153150 AT1G78200.1 32.584 178 106 5 166 342 104 268 2.60e-16 79.3
Msa1153150 AT1G78200.3 32.584 178 106 5 166 342 104 268 2.60e-16 79.3
Msa1153150 AT1G78200.2 32.584 178 106 5 166 342 104 268 2.60e-16 79.3
Msa1153150 AT2G20630.1 28.571 252 128 10 91 341 63 263 2.63e-16 79.3
Msa1153150 AT2G25620.1 27.063 303 155 11 75 367 114 360 3.13e-16 80.5
Msa1153150 AT2G25620.2 27.063 303 155 11 75 367 114 360 3.13e-16 80.5
Msa1153150 AT3G62260.3 28.571 238 123 8 91 323 27 222 3.39e-16 79.3
Msa1153150 AT2G20630.2 28.916 249 125 10 94 341 66 263 5.11e-16 78.6
Msa1153150 AT3G62260.2 28.571 238 123 8 91 323 117 312 6.63e-16 79.7
Msa1153150 AT3G62260.1 28.571 238 123 8 91 323 116 311 6.96e-16 79.3
Msa1153150 AT1G18030.1 28.111 217 121 5 163 363 151 348 1.15e-15 78.6
Msa1153150 AT5G53140.1 26.848 257 134 9 87 340 126 331 1.54e-15 78.6
Msa1153150 AT5G53140.2 26.848 257 134 9 87 340 126 331 1.54e-15 78.6
Msa1153150 AT1G48040.1 29.268 246 124 8 91 329 116 318 7.60e-15 76.3
Msa1153150 AT2G30020.1 27.203 261 141 10 62 322 141 352 1.89e-14 75.1
Msa1153150 AT2G40860.4 32.184 174 101 7 170 340 375 534 2.14e-14 75.9
Msa1153150 AT2G40860.2 31.792 173 103 6 170 340 473 632 2.89e-14 75.5
Msa1153150 AT2G40860.1 31.792 173 103 6 170 340 473 632 4.00e-14 75.1
Msa1153150 AT1G34750.2 36.076 158 83 6 187 342 126 267 5.10e-14 72.8
Msa1153150 AT1G34750.1 36.076 158 83 6 187 342 126 267 5.10e-14 72.8
Msa1153150 AT1G34750.3 36.076 158 83 6 187 342 126 267 5.10e-14 72.8
Msa1153150 AT2G34740.2 32.544 169 97 7 166 333 173 325 1.05e-13 72.4
Msa1153150 AT2G34740.3 32.544 169 97 7 166 333 155 307 1.05e-13 72.0
Msa1153150 AT4G31860.3 27.815 302 168 13 45 323 13 287 2.59e-13 70.9
Msa1153150 AT4G31860.1 27.815 302 168 13 45 323 13 287 4.05e-13 70.9
Msa1153150 AT3G15260.2 34.615 156 86 6 187 341 133 273 7.73e-13 69.3
Msa1153150 AT3G15260.1 34.615 156 86 6 187 341 133 273 7.73e-13 69.3
Msa1153150 AT1G22280.3 35.032 157 86 6 187 342 131 272 2.45e-12 67.8
Msa1153150 AT1G22280.1 35.032 157 86 6 187 342 125 266 2.53e-12 67.8
Msa1153150 AT3G51470.1 24.254 268 142 10 64 323 76 290 5.96e-12 67.4
Msa1153150 AT1G18030.2 28.221 163 92 3 163 313 151 300 8.15e-12 66.2
Msa1153150 AT3G51470.2 24.627 268 141 10 64 323 32 246 8.20e-12 66.6
Msa1153150 AT1G34750.4 37.681 138 66 7 187 322 126 245 4.89e-11 63.2

Find 110 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTAAAATGTTGTATATTT+AGG 0.180151 7_4:-39390318 Msa1153150:three_prime_UTR
TTTGATGCTGTCGACTTTCT+TGG 0.185491 7_4:+39390721 None:intergenic
CCAGTTGATAGTTGGAAATT+TGG 0.206532 7_4:-39391619 Msa1153150:CDS
GCAAGATGAATTTGTTGTTT+TGG 0.234194 7_4:-39391230 Msa1153150:CDS
CAATCATCTAAGCACCTTAA+TGG 0.234478 7_4:-39390388 Msa1153150:CDS
CAACAGCCACCCATGTTTCT+TGG 0.244069 7_4:+39392894 None:intergenic
GGAAGGAAGGGTGGGAATTA+AGG 0.256545 7_4:+39392980 None:intergenic
AATGCCTTCAACTTCCATTA+AGG 0.307538 7_4:+39390374 None:intergenic
CAGTTGATAGTTGGAAATTT+GGG 0.326425 7_4:-39391618 Msa1153150:CDS
ACCAAGATTCAATGACAGTT+TGG 0.327013 7_4:-39392668 Msa1153150:CDS
AACCGGATGTATACAGAATA+TGG 0.329139 7_4:-39391366 Msa1153150:CDS
ACTATCTGAAGCAATCAAAA+TGG 0.340437 7_4:-39392035 Msa1153150:CDS
TCTGAAATCGTTTGATGAAA+TGG 0.343971 7_4:-39391891 Msa1153150:CDS
TTATCTGCCATATAGATTGA+TGG 0.353298 7_4:-39390009 None:intergenic
CCCAAACTGTCATTGAATCT+TGG 0.361120 7_4:+39392667 None:intergenic
AAATAAACCATCAATCTATA+TGG 0.363807 7_4:+39390002 None:intergenic
GAATAAATTGCGAAACTTTG+TGG 0.364550 7_4:+39392077 None:intergenic
GATTGAGAATGTGATAAAAT+AGG 0.372960 7_4:+39390601 None:intergenic
CTAGCTATGTCAAGAGCCTT+TGG 0.377892 7_4:-39391319 Msa1153150:CDS
CCAAGATTCAATGACAGTTT+GGG 0.379856 7_4:-39392667 Msa1153150:CDS
AGCTGTAGCTTTAATTAAAC+AGG 0.381379 7_4:-39391816 Msa1153150:intron
TTGTGATAAGCTCTAATAAC+TGG 0.381819 7_4:-39390353 Msa1153150:three_prime_UTR
ACAACATATCCCTTGCTTCA+TGG 0.386921 7_4:-39391925 Msa1153150:CDS
CAATACTTACTTGGAATATC+CGG 0.392328 7_4:+39391522 None:intergenic
GGAGCAATGGTTAGATTAAG+AGG 0.393042 7_4:-39392741 Msa1153150:CDS
AGCCACGATGTTGCTCTTAG+AGG 0.393147 7_4:-39392870 Msa1153150:CDS
GAAGACAACGAAACTGTTGC+TGG 0.408284 7_4:-39390517 Msa1153150:CDS
AAATCAACAGTAAGTTGAAC+AGG 0.410781 7_4:+39391549 None:intergenic
GTCTTCTGTGGCGTGTTTGA+CGG 0.416167 7_4:-39392115 Msa1153150:CDS
CTCATATTTCTAGCAAGCCT+TGG 0.424591 7_4:+39390418 None:intergenic
ACTTACTGTTGATTTGAAAC+CGG 0.431238 7_4:-39391541 Msa1153150:CDS
AACAACAAATTCATCTTGCT+TGG 0.431974 7_4:+39391234 None:intergenic
ATTAGCATCATAGTATTTGT+TGG 0.436523 7_4:+39392000 None:intergenic
CAACATATCCCTTGCTTCAT+GGG 0.437188 7_4:-39391924 Msa1153150:CDS
CAGGGTGACCAGTTGATAGT+TGG 0.439596 7_4:-39391627 Msa1153150:CDS
GATGTTGATAACATTGATAA+TGG 0.450851 7_4:+39390080 None:intergenic
CAGGACTATGCTGGAGAAGA+AGG 0.456514 7_4:-39392142 Msa1153150:CDS
CCAAATTTCCAACTATCAAC+TGG 0.463615 7_4:+39391619 None:intergenic
GAAACTGTTGCTGGAAAAGT+TGG 0.466399 7_4:-39390508 Msa1153150:CDS
ATCATCAAGAAACAAGCATA+TGG 0.471604 7_4:+39390627 None:intergenic
GCCTGGATGTATAAGTATCC+TGG 0.473714 7_4:-39390673 Msa1153150:CDS
TTTCGCTGCAGACGAAGAAC+CGG 0.478382 7_4:-39391383 Msa1153150:CDS
GAAGAATGGAAAGCTCTTGA+AGG 0.479840 7_4:-39390472 Msa1153150:CDS
GAATCTTTAGCTGTGAAGGA+AGG 0.481881 7_4:-39391408 Msa1153150:CDS
TTATACCTCAAAAGATGTAA+TGG 0.487329 7_4:-39390151 Msa1153150:three_prime_UTR
CTCGTGCAGTTCTTTGCACA+AGG 0.487423 7_4:-39391590 Msa1153150:CDS
ATCCATATTCTGTATACATC+CGG 0.490554 7_4:+39391364 None:intergenic
TGCAAAGAGTTGGCAGAGAC+AGG 0.493057 7_4:+39393023 None:intergenic
TATTGTGAAGGAAGGAAGGG+TGG 0.496139 7_4:+39392971 None:intergenic
ATGCCTGATGATGACTGTCC+TGG 0.497294 7_4:-39391343 Msa1153150:CDS
AGTCCAGGACAGTCATCATC+AGG 0.497520 7_4:+39391340 None:intergenic
TGGAAAAGTTGGAGTGGAAC+TGG 0.501997 7_4:-39390497 Msa1153150:CDS
TCAAGAATCTTTAGCTGTGA+AGG 0.508129 7_4:-39391412 Msa1153150:CDS
TGTGGCGTGTTTGACGGTCA+TGG 0.512054 7_4:-39392109 Msa1153150:CDS
AAAATTTAAATTTAATGATG+AGG 0.514871 7_4:-39390233 Msa1153150:three_prime_UTR
TTTGACGGTCATGGTCCTCT+AGG 0.518300 7_4:-39392100 Msa1153150:CDS
GTTGAAACCGAGGTGAATGA+TGG 0.518422 7_4:-39392834 Msa1153150:CDS
AAATGGATGATCATCTTGCT+CGG 0.523245 7_4:-39391874 Msa1153150:CDS
ATTGTGAAGGAAGGAAGGGT+GGG 0.524054 7_4:+39392972 None:intergenic
ATATATTATCAGGACTATGC+TGG 0.527095 7_4:-39392151 Msa1153150:intron
TAAAGCGTGCTGTTAAAGCC+TGG 0.527207 7_4:-39390690 Msa1153150:CDS
GTCCCTCATGTCTTATAAGA+AGG 0.528705 7_4:+39390123 None:intergenic
AATGGTAAATAATTAGTTGA+TGG 0.539405 7_4:+39390098 None:intergenic
GAGCAATGGTTAGATTAAGA+GGG 0.539562 7_4:-39392740 Msa1153150:CDS
AGCACCTTAATGGAAGTTGA+AGG 0.541332 7_4:-39390378 Msa1153150:exon
ATTCAATATCAAAACTTCCA+AGG 0.542466 7_4:-39390435 Msa1153150:CDS
AACATCCTTCCCATGAAGCA+AGG 0.545861 7_4:+39391915 None:intergenic
AATCTTTAGCTGTGAAGGAA+GGG 0.549092 7_4:-39391407 Msa1153150:CDS
GATTGCTTCAGATAGTTTCG+AGG 0.550025 7_4:+39392042 None:intergenic
GAAAGAAACATGCAAAGAGT+TGG 0.550967 7_4:+39393013 None:intergenic
TGTTGATGCGGTTACTATTG+TGG 0.552058 7_4:+39391945 None:intergenic
ATATCCCTTGCTTCATGGGA+AGG 0.553019 7_4:-39391920 Msa1153150:CDS
GAGTGGAACTGGATGAAGAA+TGG 0.555708 7_4:-39390486 Msa1153150:CDS
GTTGCTCTTAGAGGAGGAGG+AGG 0.558281 7_4:-39392861 Msa1153150:CDS
TCCAGGATACTTATACATCC+AGG 0.559238 7_4:+39390672 None:intergenic
AATGGATGATCATCTTGCTC+GGG 0.566783 7_4:-39391873 Msa1153150:CDS
ACGTTGTCTTCCAAGAAACA+TGG 0.567860 7_4:-39392904 Msa1153150:exon
TATACACAACAAGGTATGAA+AGG 0.568417 7_4:-39392696 Msa1153150:CDS
GCTCTTGACATAGCTAGTCC+AGG 0.570855 7_4:+39391325 None:intergenic
AATCAAAATGGCACAACAGA+AGG 0.572079 7_4:-39392023 Msa1153150:CDS
AGACAGGAACATGGAAGAAG+TGG 0.578180 7_4:+39393039 None:intergenic
GCTGTCACGTATCAAAATGA+TGG 0.579947 7_4:-39392762 Msa1153150:CDS
AGTTGGCAGAGACAGGAACA+TGG 0.580347 7_4:+39393030 None:intergenic
GGTAAATAATTAGTTGATGG+TGG 0.591099 7_4:+39390101 None:intergenic
AAGAATGGAAAGCTCTTGAA+GGG 0.594451 7_4:-39390471 Msa1153150:CDS
AGGAGGCAGAGTTGAAACCG+AGG 0.596046 7_4:-39392844 Msa1153150:CDS
GTATCAAAATGATGGAGCAA+TGG 0.597945 7_4:-39392754 Msa1153150:CDS
GATGTTGCTCTTAGAGGAGG+AGG 0.599534 7_4:-39392864 Msa1153150:CDS
CACGATGTTGCTCTTAGAGG+AGG 0.613102 7_4:-39392867 Msa1153150:CDS
ATGCCTTCTTATAAGACATG+AGG 0.613170 7_4:-39390126 Msa1153150:three_prime_UTR
ACATCCTTCCCATGAAGCAA+GGG 0.615226 7_4:+39391916 None:intergenic
ATTGCTTCAGATAGTTTCGA+GGG 0.615251 7_4:+39392043 None:intergenic
CAAGGGATATGTTGTTGATG+CGG 0.616397 7_4:+39391933 None:intergenic
CTATGCTGGAGAAGAAGGCA+TGG 0.621989 7_4:-39392137 Msa1153150:CDS
AACACTGATAGCTATTGCAG+TGG 0.622757 7_4:-39391845 Msa1153150:CDS
AGATTCAATGACAGTTTGGG+AGG 0.625524 7_4:-39392664 Msa1153150:intron
TGCGAAACTTTGTGGCCTAG+AGG 0.626825 7_4:+39392085 None:intergenic
CGTTGTCTTCCAAGAAACAT+GGG 0.631651 7_4:-39392903 Msa1153150:exon
TCGTGCAGTTCTTTGCACAA+GGG 0.632091 7_4:-39391589 Msa1153150:CDS
TGCCTTCTTATAAGACATGA+GGG 0.635364 7_4:-39390125 Msa1153150:three_prime_UTR
ATATTCTCCATCATTCACCT+CGG 0.635736 7_4:+39392827 None:intergenic
ACACATCTGGTGATGCAATG+AGG 0.636186 7_4:+39391272 None:intergenic
GAAGAAGGCATGGTCTTCTG+TGG 0.636280 7_4:-39392127 Msa1153150:CDS
GTTTCAATGTATACACAACA+AGG 0.640908 7_4:-39392705 Msa1153150:CDS
AGGAACATGGAAGAAGTGGT+TGG 0.642642 7_4:+39393043 None:intergenic
TGATGCGGTTACTATTGTGG+TGG 0.653844 7_4:+39391948 None:intergenic
TGTTGCTGGAAAAGTTGGAG+TGG 0.662878 7_4:-39390503 Msa1153150:CDS
ATTGGGGTTGATATAAAACG+TGG 0.694024 7_4:-39390261 Msa1153150:three_prime_UTR
CTCCTCTAAGAGCAACATCG+TGG 0.712569 7_4:+39392868 None:intergenic
TGTCTTCCAAGAAACATGGG+TGG 0.731949 7_4:-39392900 Msa1153150:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTTTTTACAGATAT+GGG - chr7_4:39392266-39392285 Msa1153150:intron 10.0%
!! AAAATTTAAATTTAATGATG+AGG - chr7_4:39392821-39392840 Msa1153150:CDS 10.0%
!!! TTTTGATGAATTTTTGTTTT+TGG - chr7_4:39390490-39390509 Msa1153150:CDS 15.0%
!! AATGATTAATCAAATTGAAA+TGG + chr7_4:39390586-39390605 None:intergenic 15.0%
!! AATTATGTGATTTAATCTTA+TGG - chr7_4:39390803-39390822 Msa1153150:intron 15.0%
!! AAATTACAATTAGATTTGAT+AGG + chr7_4:39391598-39391617 None:intergenic 15.0%
!! CATATCTGTAAAAAAAATAA+AGG + chr7_4:39392267-39392286 None:intergenic 15.0%
!!! CTTTATTTTTTTTACAGATA+TGG - chr7_4:39392265-39392284 Msa1153150:intron 15.0%
!!! AATTTTTCACTCAAATATTT+AGG - chr7_4:39392863-39392882 Msa1153150:CDS 15.0%
!!! ATTTTTCACTCAAATATTTA+GGG - chr7_4:39392864-39392883 Msa1153150:CDS 15.0%
!!! AATATTTTTATTGTGAAGGA+AGG + chr7_4:39390094-39390113 None:intergenic 20.0%
!!! ATGGAATATTTTTATTGTGA+AGG + chr7_4:39390098-39390117 None:intergenic 20.0%
!!! TTTTTTTCAATCAATTCTTG+TGG - chr7_4:39390526-39390545 Msa1153150:CDS 20.0%
!!! TTTTTTCAATCAATTCTTGT+GGG - chr7_4:39390527-39390546 Msa1153150:CDS 20.0%
!! AATCTTGACAATTACATTAT+TGG + chr7_4:39390660-39390679 None:intergenic 20.0%
!! TGGACTTTATTATTAGATTA+TGG - chr7_4:39390823-39390842 Msa1153150:intron 20.0%
!!! TAATTTTATCAACGTTTTTC+AGG - chr7_4:39391612-39391631 Msa1153150:CDS 20.0%
!! ACCTTAGAATTAAAAATCAA+GGG + chr7_4:39391890-39391909 None:intergenic 20.0%
!! AACCTTAGAATTAAAAATCA+AGG + chr7_4:39391891-39391910 None:intergenic 20.0%
!! TAACATAACAATTATGTATC+CGG + chr7_4:39392168-39392187 None:intergenic 20.0%
!! GTAAAAAAAATAAAGGATAC+CGG + chr7_4:39392260-39392279 None:intergenic 20.0%
!! ACCTAAAATGTTGTATATTT+AGG - chr7_4:39392736-39392755 Msa1153150:CDS 20.0%
!!! ACCTAAATATACAACATTTT+AGG + chr7_4:39392740-39392759 None:intergenic 20.0%
!!! TGAAGAATTTTAGAACTTAT+TGG - chr7_4:39392775-39392794 Msa1153150:CDS 20.0%
!!! GAAGAATTTTAGAACTTATT+GGG - chr7_4:39392776-39392795 Msa1153150:CDS 20.0%
!!! AAGAATTTTAGAACTTATTG+GGG - chr7_4:39392777-39392796 Msa1153150:CDS 20.0%
!!! TTTTTCACTCAAATATTTAG+GGG - chr7_4:39392865-39392884 Msa1153150:CDS 20.0%
!! AATGGTAAATAATTAGTTGA+TGG + chr7_4:39392959-39392978 None:intergenic 20.0%
!!! GATGAATTTTTGTTTTTGGT+TGG - chr7_4:39390494-39390513 Msa1153150:CDS 25.0%
!!! ATTTTAGTAGTAACTCCTAA+AGG + chr7_4:39390715-39390734 None:intergenic 25.0%
! CATAATTCTATGATTATTGC+TGG + chr7_4:39390790-39390809 None:intergenic 25.0%
! AATTGATGAAATGTAACATG+TGG - chr7_4:39390857-39390876 Msa1153150:intron 25.0%
! TGGATATGCTATATATTATC+AGG - chr7_4:39390893-39390912 Msa1153150:intron 25.0%
! ATTAGCATCATAGTATTTGT+TGG + chr7_4:39391057-39391076 None:intergenic 25.0%
! TTACATAAGGTAAGAAATCA+TGG - chr7_4:39391277-39391296 Msa1153150:CDS 25.0%
! TTGATATACCAATACTTACT+TGG + chr7_4:39391544-39391563 None:intergenic 25.0%
!! GACTTTTGTCTAAAAGATTA+TGG - chr7_4:39391759-39391778 Msa1153150:intron 25.0%
!! ATTTTTCTGTAAAACACATC+TGG + chr7_4:39391798-39391817 None:intergenic 25.0%
!!! ACCCTTGATTTTTAATTCTA+AGG - chr7_4:39391886-39391905 Msa1153150:CDS 25.0%
!! TTCAGTGTAATTTTATGTGT+CGG - chr7_4:39392025-39392044 Msa1153150:CDS 25.0%
! TCTCTTTCTTAAAACAAGTT+CGG - chr7_4:39392215-39392234 Msa1153150:intron 25.0%
! GATTGAGAATGTGATAAAAT+AGG + chr7_4:39392456-39392475 None:intergenic 25.0%
! ATTCAATATCAAAACTTCCA+AGG - chr7_4:39392619-39392638 Msa1153150:intron 25.0%
! TATTTAGGTGCAAAAAAATG+AGG - chr7_4:39392751-39392770 Msa1153150:CDS 25.0%
!! TTGAGGTATAAGCAAATTTT+TGG + chr7_4:39392894-39392913 None:intergenic 25.0%
! TTATACCTCAAAAGATGTAA+TGG - chr7_4:39392903-39392922 Msa1153150:exon 25.0%
!!! GATGTTGATAACATTGATAA+TGG + chr7_4:39392977-39392996 None:intergenic 25.0%
! TTTTATTGTGAAGGAAGGAA+GGG + chr7_4:39390089-39390108 None:intergenic 30.0%
! TTTTTATTGTGAAGGAAGGA+AGG + chr7_4:39390090-39390109 None:intergenic 30.0%
TTACCAGAAGAGAAGAAAAA+TGG + chr7_4:39390131-39390150 None:intergenic 30.0%
GTTTCAATGTATACACAACA+AGG - chr7_4:39390349-39390368 Msa1153150:three_prime_UTR 30.0%
TATACACAACAAGGTATGAA+AGG - chr7_4:39390358-39390377 Msa1153150:three_prime_UTR 30.0%
ATATATTATCAGGACTATGC+TGG - chr7_4:39390903-39390922 Msa1153150:intron 30.0%
GAATAAATTGCGAAACTTTG+TGG + chr7_4:39390980-39390999 None:intergenic 30.0%
! ACTATCTGAAGCAATCAAAA+TGG - chr7_4:39391019-39391038 Msa1153150:intron 30.0%
! TCTGAAATCGTTTGATGAAA+TGG - chr7_4:39391163-39391182 Msa1153150:intron 30.0%
!! AGCTGTAGCTTTAATTAAAC+AGG - chr7_4:39391238-39391257 Msa1153150:CDS 30.0%
CTTACCTTATGTAAGTTACA+CGG + chr7_4:39391271-39391290 None:intergenic 30.0%
!! CAGTTGATAGTTGGAAATTT+GGG - chr7_4:39391436-39391455 Msa1153150:intron 30.0%
! AAATCAACAGTAAGTTGAAC+AGG + chr7_4:39391508-39391527 None:intergenic 30.0%
!! ACTTACTGTTGATTTGAAAC+CGG - chr7_4:39391513-39391532 Msa1153150:intron 30.0%
CAATACTTACTTGGAATATC+CGG + chr7_4:39391535-39391554 None:intergenic 30.0%
ATCCATATTCTGTATACATC+CGG + chr7_4:39391693-39391712 None:intergenic 30.0%
! TTTTAGACAAAAGTCTCCAA+AGG + chr7_4:39391754-39391773 None:intergenic 30.0%
AACAACAAATTCATCTTGCT+TGG + chr7_4:39391823-39391842 None:intergenic 30.0%
!!! GCAAGATGAATTTGTTGTTT+TGG - chr7_4:39391824-39391843 Msa1153150:CDS 30.0%
! TACTTATTGACTATGAAGCA+CGG - chr7_4:39391927-39391946 Msa1153150:CDS 30.0%
TTTCAATAAGCTATGAAGCA+CGG + chr7_4:39392114-39392133 None:intergenic 30.0%
TTATGTATCCGGATAAAGAA+AGG + chr7_4:39392157-39392176 None:intergenic 30.0%
ATCATCAAGAAACAAGCATA+TGG + chr7_4:39392430-39392449 None:intergenic 30.0%
! TTGTGATAAGCTCTAATAAC+TGG - chr7_4:39392701-39392720 Msa1153150:CDS 30.0%
!! GGTAAATAATTAGTTGATGG+TGG + chr7_4:39392956-39392975 None:intergenic 30.0%
GAAAGAAACATGCAAAGAGT+TGG + chr7_4:39390044-39390063 None:intergenic 35.0%
GAAAAATGGATGGAATGGAA+TGG + chr7_4:39390117-39390136 None:intergenic 35.0%
GAGAAGAAAAATGGATGGAA+TGG + chr7_4:39390122-39390141 None:intergenic 35.0%
CAGAAGAGAAGAAAAATGGA+TGG + chr7_4:39390127-39390146 None:intergenic 35.0%
!! CATCCATTTTTCTTCTCTTC+TGG - chr7_4:39390125-39390144 Msa1153150:three_prime_UTR 35.0%
ATATTCTCCATCATTCACCT+CGG + chr7_4:39390230-39390249 None:intergenic 35.0%
! GTATCAAAATGATGGAGCAA+TGG - chr7_4:39390300-39390319 Msa1153150:three_prime_UTR 35.0%
GAGCAATGGTTAGATTAAGA+GGG - chr7_4:39390314-39390333 Msa1153150:three_prime_UTR 35.0%
ACCAAGATTCAATGACAGTT+TGG - chr7_4:39390386-39390405 Msa1153150:CDS 35.0%
CCAAGATTCAATGACAGTTT+GGG - chr7_4:39390387-39390406 Msa1153150:CDS 35.0%
CAACCATTTATGACACCTTT+AGG - chr7_4:39390697-39390716 Msa1153150:CDS 35.0%
!! ACTCCTAAAGGTGTCATAAA+TGG + chr7_4:39390703-39390722 None:intergenic 35.0%
! CTTCATTGATAGCATTCTCT+TGG - chr7_4:39390736-39390755 Msa1153150:CDS 35.0%
CATGTGGCTATGATTAATGT+TGG - chr7_4:39390873-39390892 Msa1153150:intron 35.0%
ATTGCTTCAGATAGTTTCGA+GGG + chr7_4:39391014-39391033 None:intergenic 35.0%
AATCAAAATGGCACAACAGA+AGG - chr7_4:39391031-39391050 Msa1153150:intron 35.0%
AAATGGATGATCATCTTGCT+CGG - chr7_4:39391180-39391199 Msa1153150:intron 35.0%
GTAACCGTGTAACTTACATA+AGG - chr7_4:39391264-39391283 Msa1153150:CDS 35.0%
CGTTTACCCTATAAATTGCA+GGG - chr7_4:39391409-39391428 Msa1153150:CDS 35.0%
CCAAATTTCCAACTATCAAC+TGG + chr7_4:39391438-39391457 None:intergenic 35.0%
!! CCAGTTGATAGTTGGAAATT+TGG - chr7_4:39391435-39391454 Msa1153150:intron 35.0%
CGGATATTCCAAGTAAGTAT+TGG - chr7_4:39391533-39391552 Msa1153150:CDS 35.0%
TCAAGAATCTTTAGCTGTGA+AGG - chr7_4:39391642-39391661 Msa1153150:intron 35.0%
AATCTTTAGCTGTGAAGGAA+GGG - chr7_4:39391647-39391666 Msa1153150:intron 35.0%
AACCGGATGTATACAGAATA+TGG - chr7_4:39391688-39391707 Msa1153150:intron 35.0%
!!! TTTGTTGTTTTGGCAACTGA+TGG - chr7_4:39391834-39391853 Msa1153150:CDS 35.0%
!!! TTGTTGTTTTGGCAACTGAT+GGG - chr7_4:39391835-39391854 Msa1153150:CDS 35.0%
ACTCTGATCCTTTCTTTATC+CGG - chr7_4:39392146-39392165 Msa1153150:intron 35.0%
TTAAGAAAGAGATCCATGCA+TGG + chr7_4:39392207-39392226 None:intergenic 35.0%
AAGAATGGAAAGCTCTTGAA+GGG - chr7_4:39392583-39392602 Msa1153150:intron 35.0%
CAATCATCTAAGCACCTTAA+TGG - chr7_4:39392666-39392685 Msa1153150:CDS 35.0%
AATGCCTTCAACTTCCATTA+AGG + chr7_4:39392683-39392702 None:intergenic 35.0%
!! ATTGGGGTTGATATAAAACG+TGG - chr7_4:39392793-39392812 Msa1153150:CDS 35.0%
! CATAGCCATTACATCTTTTG+AGG + chr7_4:39392911-39392930 None:intergenic 35.0%
ATGCCTTCTTATAAGACATG+AGG - chr7_4:39392928-39392947 Msa1153150:five_prime_UTR 35.0%
TGCCTTCTTATAAGACATGA+GGG - chr7_4:39392929-39392948 Msa1153150:five_prime_UTR 35.0%
ACGTTGTCTTCCAAGAAACA+TGG - chr7_4:39390150-39390169 Msa1153150:three_prime_UTR 40.0%
CGTTGTCTTCCAAGAAACAT+GGG - chr7_4:39390151-39390170 Msa1153150:three_prime_UTR 40.0%
GCTGTCACGTATCAAAATGA+TGG - chr7_4:39390292-39390311 Msa1153150:three_prime_UTR 40.0%
GGAGCAATGGTTAGATTAAG+AGG - chr7_4:39390313-39390332 Msa1153150:three_prime_UTR 40.0%
CCCAAACTGTCATTGAATCT+TGG + chr7_4:39390390-39390409 None:intergenic 40.0%
AGATTCAATGACAGTTTGGG+AGG - chr7_4:39390390-39390409 Msa1153150:CDS 40.0%
TTGCTGGAATCATACAGCTA+AGG + chr7_4:39390774-39390793 None:intergenic 40.0%
GATTGCTTCAGATAGTTTCG+AGG + chr7_4:39391015-39391034 None:intergenic 40.0%
TGTTGATGCGGTTACTATTG+TGG + chr7_4:39391112-39391131 None:intergenic 40.0%
CAAGGGATATGTTGTTGATG+CGG + chr7_4:39391124-39391143 None:intergenic 40.0%
ACAACATATCCCTTGCTTCA+TGG - chr7_4:39391129-39391148 Msa1153150:intron 40.0%
CAACATATCCCTTGCTTCAT+GGG - chr7_4:39391130-39391149 Msa1153150:intron 40.0%
AATGGATGATCATCTTGCTC+GGG - chr7_4:39391181-39391200 Msa1153150:intron 40.0%
AACACTGATAGCTATTGCAG+TGG - chr7_4:39391209-39391228 Msa1153150:intron 40.0%
GCGTTTACCCTATAAATTGC+AGG - chr7_4:39391408-39391427 Msa1153150:CDS 40.0%
TGGTCACCCTGCAATTTATA+GGG + chr7_4:39391418-39391437 None:intergenic 40.0%
GAATCTTTAGCTGTGAAGGA+AGG - chr7_4:39391646-39391665 Msa1153150:intron 40.0%
!!! TGTTGTTTTGGCAACTGATG+GGG - chr7_4:39391836-39391855 Msa1153150:CDS 40.0%
TTGACTATGAAGCACGGATA+CGG - chr7_4:39391933-39391952 Msa1153150:CDS 40.0%
! TTTAGAGTTCGAACCATGCA+TGG - chr7_4:39392191-39392210 Msa1153150:intron 40.0%
TGTCTGTTAGCTCACAAAAC+CGG - chr7_4:39392238-39392257 Msa1153150:intron 40.0%
!! TTTGATGCTGTCGACTTTCT+TGG + chr7_4:39392336-39392355 None:intergenic 40.0%
TCCAGGATACTTATACATCC+AGG + chr7_4:39392385-39392404 None:intergenic 40.0%
GAAACTGTTGCTGGAAAAGT+TGG - chr7_4:39392546-39392565 Msa1153150:intron 40.0%
GAAGAATGGAAAGCTCTTGA+AGG - chr7_4:39392582-39392601 Msa1153150:intron 40.0%
!! CTCATATTTCTAGCAAGCCT+TGG + chr7_4:39392639-39392658 None:intergenic 40.0%
AGCACCTTAATGGAAGTTGA+AGG - chr7_4:39392676-39392695 Msa1153150:CDS 40.0%
GTCCCTCATGTCTTATAAGA+AGG + chr7_4:39392934-39392953 None:intergenic 40.0%
AGGAACATGGAAGAAGTGGT+TGG + chr7_4:39390014-39390033 None:intergenic 45.0%
AGACAGGAACATGGAAGAAG+TGG + chr7_4:39390018-39390037 None:intergenic 45.0%
ATTGTGAAGGAAGGAAGGGT+GGG + chr7_4:39390085-39390104 None:intergenic 45.0%
TATTGTGAAGGAAGGAAGGG+TGG + chr7_4:39390086-39390105 None:intergenic 45.0%
TGTCTTCCAAGAAACATGGG+TGG - chr7_4:39390154-39390173 Msa1153150:three_prime_UTR 45.0%
GTTGAAACCGAGGTGAATGA+TGG - chr7_4:39390220-39390239 Msa1153150:three_prime_UTR 45.0%
TGATGCGGTTACTATTGTGG+TGG + chr7_4:39391109-39391128 None:intergenic 45.0%
ATATCCCTTGCTTCATGGGA+AGG - chr7_4:39391134-39391153 Msa1153150:intron 45.0%
ACATCCTTCCCATGAAGCAA+GGG + chr7_4:39391141-39391160 None:intergenic 45.0%
AACATCCTTCCCATGAAGCA+AGG + chr7_4:39391142-39391161 None:intergenic 45.0%
TGTCTCTGTGATTGCAGTTG+AGG + chr7_4:39391357-39391376 None:intergenic 45.0%
CTGGTCACCCTGCAATTTAT+AGG + chr7_4:39391419-39391438 None:intergenic 45.0%
TCGTGCAGTTCTTTGCACAA+GGG - chr7_4:39391465-39391484 Msa1153150:intron 45.0%
CTAGCTATGTCAAGAGCCTT+TGG - chr7_4:39391735-39391754 Msa1153150:intron 45.0%
! ACACATCTGGTGATGCAATG+AGG + chr7_4:39391785-39391804 None:intergenic 45.0%
!! TTTATGTGTCGGTGTCGTGT+CGG - chr7_4:39392036-39392055 Msa1153150:CDS 45.0%
ACATGACACGTGTCTGACAT+GGG - chr7_4:39392065-39392084 Msa1153150:CDS 45.0%
TATGAAGCACGGAAACTCCT+GGG + chr7_4:39392103-39392122 None:intergenic 45.0%
! TAAAGCGTGCTGTTAAAGCC+TGG - chr7_4:39392364-39392383 Msa1153150:intron 45.0%
GCCTGGATGTATAAGTATCC+TGG - chr7_4:39392381-39392400 Msa1153150:intron 45.0%
!!! CAATCGTCGATTTTCGATCC+AGG + chr7_4:39392402-39392421 None:intergenic 45.0%
GAAGACAACGAAACTGTTGC+TGG - chr7_4:39392537-39392556 Msa1153150:intron 45.0%
TGTTGCTGGAAAAGTTGGAG+TGG - chr7_4:39392551-39392570 Msa1153150:intron 45.0%
TGGAAAAGTTGGAGTGGAAC+TGG - chr7_4:39392557-39392576 Msa1153150:intron 45.0%
GAGTGGAACTGGATGAAGAA+TGG - chr7_4:39392568-39392587 Msa1153150:intron 45.0%
AGTTGGCAGAGACAGGAACA+TGG + chr7_4:39390027-39390046 None:intergenic 50.0%
TGCAAAGAGTTGGCAGAGAC+AGG + chr7_4:39390034-39390053 None:intergenic 50.0%
GGAAGGAAGGGTGGGAATTA+AGG + chr7_4:39390077-39390096 None:intergenic 50.0%
CAACAGCCACCCATGTTTCT+TGG + chr7_4:39390163-39390182 None:intergenic 50.0%
AGCCACGATGTTGCTCTTAG+AGG - chr7_4:39390184-39390203 Msa1153150:three_prime_UTR 50.0%
! CTCCTCTAAGAGCAACATCG+TGG + chr7_4:39390189-39390208 None:intergenic 50.0%
CACGATGTTGCTCTTAGAGG+AGG - chr7_4:39390187-39390206 Msa1153150:three_prime_UTR 50.0%
GATGTTGCTCTTAGAGGAGG+AGG - chr7_4:39390190-39390209 Msa1153150:three_prime_UTR 50.0%
CAGGACTATGCTGGAGAAGA+AGG - chr7_4:39390912-39390931 Msa1153150:intron 50.0%
CTATGCTGGAGAAGAAGGCA+TGG - chr7_4:39390917-39390936 Msa1153150:intron 50.0%
! GAAGAAGGCATGGTCTTCTG+TGG - chr7_4:39390927-39390946 Msa1153150:intron 50.0%
GTCTTCTGTGGCGTGTTTGA+CGG - chr7_4:39390939-39390958 Msa1153150:intron 50.0%
TTTGACGGTCATGGTCCTCT+AGG - chr7_4:39390954-39390973 Msa1153150:intron 50.0%
TGCGAAACTTTGTGGCCTAG+AGG + chr7_4:39390972-39390991 None:intergenic 50.0%
!! CAGGGTGACCAGTTGATAGT+TGG - chr7_4:39391427-39391446 Msa1153150:intron 50.0%
CTCGTGCAGTTCTTTGCACA+AGG - chr7_4:39391464-39391483 Msa1153150:intron 50.0%
TTTCGCTGCAGACGAAGAAC+CGG - chr7_4:39391671-39391690 Msa1153150:intron 50.0%
! ATGCCTGATGATGACTGTCC+TGG - chr7_4:39391711-39391730 Msa1153150:intron 50.0%
AGTCCAGGACAGTCATCATC+AGG + chr7_4:39391717-39391736 None:intergenic 50.0%
GCTCTTGACATAGCTAGTCC+AGG + chr7_4:39391732-39391751 None:intergenic 50.0%
ATGAAGCACGGATACGGACA+TGG - chr7_4:39391939-39391958 Msa1153150:CDS 50.0%
GACATGACACGTGTCTGACA+TGG - chr7_4:39392064-39392083 Msa1153150:CDS 50.0%
CATGACACGTGTCTGACATG+GGG - chr7_4:39392066-39392085 Msa1153150:CDS 50.0%
CTATGAAGCACGGAAACTCC+TGG + chr7_4:39392104-39392123 None:intergenic 50.0%
GTTGCTCTTAGAGGAGGAGG+AGG - chr7_4:39390193-39390212 Msa1153150:three_prime_UTR 55.0%
AGGAGGCAGAGTTGAAACCG+AGG - chr7_4:39390210-39390229 Msa1153150:three_prime_UTR 55.0%
TGTGGCGTGTTTGACGGTCA+TGG - chr7_4:39390945-39390964 Msa1153150:intron 55.0%
ACGGATACGGACATGGACAC+CGG - chr7_4:39391946-39391965 Msa1153150:CDS 55.0%
GTCAGTGTCTGTGTCGTGTC+CGG + chr7_4:39391968-39391987 None:intergenic 55.0%
GCACGGAAACTCCTGGGATA+AGG + chr7_4:39392097-39392116 None:intergenic 55.0%
ATGGGGACACGCCTTATCCC+AGG - chr7_4:39392083-39392102 Msa1153150:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 39390010 39393066 39390010 ID=Msa1153150;Name=Msa1153150
chr7_4 mRNA 39390010 39393066 39390010 ID=Msa1153150-mRNA-1;Parent=Msa1153150;Name=Msa1153150-mRNA-1;_AED=0.05;_eAED=0.05;_QI=159|1|1|1|0.8|0.66|6|335|446
chr7_4 exon 39390010 39390033 39390010 ID=Msa1153150-mRNA-1:exon:9568;Parent=Msa1153150-mRNA-1
chr7_4 exon 39390070 39390794 39390070 ID=Msa1153150-mRNA-1:exon:9567;Parent=Msa1153150-mRNA-1
chr7_4 exon 39391219 39391442 39391219 ID=Msa1153150-mRNA-1:exon:9566;Parent=Msa1153150-mRNA-1
chr7_4 exon 39391532 39391646 39391532 ID=Msa1153150-mRNA-1:exon:9565;Parent=Msa1153150-mRNA-1
chr7_4 exon 39391817 39392161 39391817 ID=Msa1153150-mRNA-1:exon:9564;Parent=Msa1153150-mRNA-1
chr7_4 exon 39392665 39393066 39392665 ID=Msa1153150-mRNA-1:exon:9563;Parent=Msa1153150-mRNA-1
chr7_4 five_prime_UTR 39392908 39393066 39392908 ID=Msa1153150-mRNA-1:five_prime_utr;Parent=Msa1153150-mRNA-1
chr7_4 CDS 39392665 39392907 39392665 ID=Msa1153150-mRNA-1:cds;Parent=Msa1153150-mRNA-1
chr7_4 CDS 39391817 39392161 39391817 ID=Msa1153150-mRNA-1:cds;Parent=Msa1153150-mRNA-1
chr7_4 CDS 39391532 39391646 39391532 ID=Msa1153150-mRNA-1:cds;Parent=Msa1153150-mRNA-1
chr7_4 CDS 39391219 39391442 39391219 ID=Msa1153150-mRNA-1:cds;Parent=Msa1153150-mRNA-1
chr7_4 CDS 39390381 39390794 39390381 ID=Msa1153150-mRNA-1:cds;Parent=Msa1153150-mRNA-1
chr7_4 three_prime_UTR 39390070 39390380 39390070 ID=Msa1153150-mRNA-1:three_prime_utr;Parent=Msa1153150-mRNA-1
chr7_4 three_prime_UTR 39390010 39390033 39390010 ID=Msa1153150-mRNA-1:three_prime_utr;Parent=Msa1153150-mRNA-1
Gene Sequence

>Msa1153150

ATGGGTGGCTGTTGCAGCCACGATGTTGCTCTTAGAGGAGGAGGAGGCAGAGTTGAAACCGAGGTGAATGATGGAGAATATGAATATGATGATAGTGAAGATAATAATATTAATAATAATGATGCTGTCACGTATCAAAATGATGGAGCAATGGTTAGATTAAGAGGGTTTTCTAAGTTTGTTTCAATGTATACACAACAAGGTATGAAAGGTGTTAACCAAGATTCAATGACAGTTTGGGAGGACTATGCTGGAGAAGAAGGCATGGTCTTCTGTGGCGTGTTTGACGGTCATGGTCCTCTAGGCCACAAAGTTTCGCAATTTATTCGTGACAATCTACCCTCGAAACTATCTGAAGCAATCAAAATGGCACAACAGAAGGCCAACAAATACTATGATGCTAATGACGCAGATACTGACAATTTTGACGATGTCCACCACAATAGTAACCGCATCAACAACATATCCCTTGCTTCATGGGAAGGATGTTTTCTGAAATCGTTTGATGAAATGGATGATCATCTTGCTCGGGAAGTTAACACTGATAGCTATTGCAGTGGTTGCACAGCTGTAGCTTTAATTAAACAGGGTGACCAGTTGATAGTTGGAAATTTGGGCGATTCTCGTGCAGTTCTTTGCACAAGGGATAGAGATGAACTTATTCCTGTTCAACTTACTGTTGATTTGAAACCGGATATTCCAAGTGAAGCTTCAAGAATCTTTAGCTGTGAAGGAAGGGTTTTCGCTGCAGACGAAGAACCGGATGTATACAGAATATGGATGCCTGATGATGACTGTCCTGGACTAGCTATGTCAAGAGCCTTTGGAGACTTTTGTCTAAAAGATTATGGCCTCATTGCATCACCAGATGTGTTTTACAGAAAAATTACCAAGCAAGATGAATTTGTTGTTTTGGCAACTGATGGGATATGGGATGTGCTGACAAACAATGAAGTAATAAACATAGTTGCTTCAGCGCCAAGAAAGTCGACAGCATCAAAGATGTTAGTAAAGCGTGCTGTTAAAGCCTGGATGTATAAGTATCCTGGATCGAAAATCGACGATTGTGCAGCCATATGCTTGTTTCTTGATGATCAACCTATTTTATCACATTCTCAATCGAGTTTCAAGCACTCTAAAAGTCGACATCGTCGCAGTAAGCACTCTAAATCACATCGAAATGAAGACAACGAAACTGTTGCTGGAAAAGTTGGAGTGGAACTGGATGAAGAATGGAAAGCTCTTGAAGGGTTAGCTAGAGCAAATTCAATATCAAAACTTCCAAGGCTTGCTAGAAATATGAGTAAAAGACAATCATCTAAGCACCTTAATGGAAGTTGA
Protein sequence

>Msa1153150

MGGCCSHDVALRGGGGRVETEVNDGEYEYDDSEDNNINNNDAVTYQNDGAMVRLRGFSKFVSMYTQQGMKGVNQDSMTVWEDYAGEEGMVFCGVFDGHGPLGHKVSQFIRDNLPSKLSEAIKMAQQKANKYYDANDADTDNFDDVHHNSNRINNISLASWEGCFLKSFDEMDDHLAREVNTDSYCSGCTAVALIKQGDQLIVGNLGDSRAVLCTRDRDELIPVQLTVDLKPDIPSEASRIFSCEGRVFAADEEPDVYRIWMPDDDCPGLAMSRAFGDFCLKDYGLIASPDVFYRKITKQDEFVVLATDGIWDVLTNNEVINIVASAPRKSTASKMLVKRAVKAWMYKYPGSKIDDCAAICLFLDDQPILSHSQSSFKHSKSRHRRSKHSKSHRNEDNETVAGKVGVELDEEWKALEGLARANSISKLPRLARNMSKRQSSKHLNGS*