Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1444560 | sp|Q42808|TBP_SOYBN | 85.000 | 200 | 3 | 1 | 1 | 173 | 1 | 200 | 2.83e-118 | 335 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1444560 | B7FMY1 | 86.500 | 200 | 0 | 1 | 1 | 173 | 1 | 200 | 5.18e-118 | 341 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031330 | Msa1444560 | 0.805624 | 1.220314e-49 | -8.615850e-47 |
| Msa0035020 | Msa1444560 | 0.808033 | 3.777313e-50 | -8.615850e-47 |
| Msa0035130 | Msa1444560 | 0.806929 | 6.478662e-50 | -8.615850e-47 |
| Msa0078640 | Msa1444560 | 0.828739 | 7.603283e-55 | -8.615850e-47 |
| Msa0103250 | Msa1444560 | 0.811530 | 6.686435e-51 | -8.615850e-47 |
| Msa1345100 | Msa1444560 | 0.800336 | 1.511978e-48 | -8.615850e-47 |
| Msa1345940 | Msa1444560 | 0.807073 | 6.038581e-50 | -8.615850e-47 |
| Msa1382790 | Msa1444560 | 0.802062 | 6.702888e-49 | -8.615850e-47 |
| Msa1389880 | Msa1444560 | 0.816660 | 4.932479e-52 | -8.615850e-47 |
| Msa1390680 | Msa1444560 | 0.843817 | 1.109322e-58 | -8.615850e-47 |
| Msa1390700 | Msa1444560 | 0.803330 | 3.670534e-49 | -8.615850e-47 |
| Msa1392890 | Msa1444560 | 0.843971 | 1.008836e-58 | -8.615850e-47 |
| Msa1392910 | Msa1444560 | 0.803199 | 3.906948e-49 | -8.615850e-47 |
| Msa1393570 | Msa1444560 | 0.803530 | 3.336605e-49 | -8.615850e-47 |
| Msa1405220 | Msa1444560 | 0.808417 | 3.129011e-50 | -8.615850e-47 |
| Msa1418280 | Msa1444560 | 0.803094 | 4.107226e-49 | -8.615850e-47 |
| Msa1440310 | Msa1444560 | 0.827816 | 1.269492e-54 | -8.615850e-47 |
| Msa1444560 | Msa1445390 | -0.805637 | 1.212646e-49 | -8.615850e-47 |
| Msa1444560 | Msa1447180 | 0.815724 | 7.984378e-52 | -8.615850e-47 |
| Msa1444560 | Msa1449340 | -0.804602 | 1.997007e-49 | -8.615850e-47 |
| Msa0632370 | Msa1444560 | 0.806941 | 6.442175e-50 | -8.615850e-47 |
| Msa0733010 | Msa1444560 | 0.823997 | 1.024519e-53 | -8.615850e-47 |
| Msa0743930 | Msa1444560 | 0.819999 | 8.644555e-53 | -8.615850e-47 |
| Msa0760560 | Msa1444560 | 0.802105 | 6.568980e-49 | -8.615850e-47 |
| Msa0784480 | Msa1444560 | 0.830137 | 3.479492e-55 | -8.615850e-47 |
| Msa0789100 | Msa1444560 | 0.801304 | 9.591958e-49 | -8.615850e-47 |
| Msa0816130 | Msa1444560 | 0.800209 | 1.604849e-48 | -8.615850e-47 |
| Msa0818060 | Msa1444560 | 0.806812 | 6.859603e-50 | -8.615850e-47 |
| Msa0821190 | Msa1444560 | 0.814360 | 1.603358e-51 | -8.615850e-47 |
| Msa0822500 | Msa1444560 | 0.816282 | 5.993515e-52 | -8.615850e-47 |
| Msa0830230 | Msa1444560 | 0.803693 | 3.086487e-49 | -8.615850e-47 |
| Msa0831110 | Msa1444560 | 0.815613 | 8.451504e-52 | -8.615850e-47 |
| Msa0833530 | Msa1444560 | 0.826238 | 3.027587e-54 | -8.615850e-47 |
| Msa0125650 | Msa1444560 | 0.840507 | 8.341325e-58 | -8.615850e-47 |
| Msa0137800 | Msa1444560 | 0.817781 | 2.759664e-52 | -8.615850e-47 |
| Msa0140500 | Msa1444560 | -0.805159 | 1.526808e-49 | -8.615850e-47 |
| Msa0189040 | Msa1444560 | 0.818104 | 2.332663e-52 | -8.615850e-47 |
| Msa0217700 | Msa1444560 | 0.836908 | 7.101226e-57 | -8.615850e-47 |
| Msa1225100 | Msa1444560 | 0.809899 | 1.506378e-50 | -8.615850e-47 |
| Msa1231840 | Msa1444560 | 0.800309 | 1.530840e-48 | -8.615850e-47 |
| Msa1243870 | Msa1444560 | 0.801561 | 8.497501e-49 | -8.615850e-47 |
| Msa1307870 | Msa1444560 | 0.812841 | 3.460788e-51 | -8.615850e-47 |
| Msa1329870 | Msa1444560 | 0.805952 | 1.041367e-49 | -8.615850e-47 |
| Msa1331050 | Msa1444560 | -0.810483 | 1.127028e-50 | -8.615850e-47 |
| Msa1332760 | Msa1444560 | 0.807306 | 5.391361e-50 | -8.615850e-47 |
| Msa0382370 | Msa1444560 | 0.812173 | 4.842631e-51 | -8.615850e-47 |
| Msa0432160 | Msa1444560 | 0.839601 | 1.437628e-57 | -8.615850e-47 |
| Msa0476680 | Msa1444560 | 0.845490 | 3.931970e-59 | -8.615850e-47 |
| Msa1026250 | Msa1444560 | 0.856355 | 3.402390e-62 | -8.615850e-47 |
| Msa1032770 | Msa1444560 | 0.847362 | 1.213424e-59 | -8.615850e-47 |
| Msa1034500 | Msa1444560 | 0.847378 | 1.201324e-59 | -8.615850e-47 |
| Msa1048220 | Msa1444560 | 0.830767 | 2.439940e-55 | -8.615850e-47 |
| Msa1089450 | Msa1444560 | 0.854520 | 1.165349e-61 | -8.615850e-47 |
| Msa1096070 | Msa1444560 | 0.800360 | 1.495110e-48 | -8.615850e-47 |
| Msa1104560 | Msa1444560 | 0.849586 | 2.941246e-60 | -8.615850e-47 |
| Msa0240900 | Msa1444560 | 0.834841 | 2.373375e-56 | -8.615850e-47 |
| Msa0241140 | Msa1444560 | 0.803418 | 3.519974e-49 | -8.615850e-47 |
| Msa0255850 | Msa1444560 | 0.800206 | 1.606744e-48 | -8.615850e-47 |
| Msa0257520 | Msa1444560 | 0.803870 | 2.836070e-49 | -8.615850e-47 |
| Msa0259210 | Msa1444560 | 0.806068 | 9.844620e-50 | -8.615850e-47 |
| Msa0259230 | Msa1444560 | 0.842707 | 2.193612e-58 | -8.615850e-47 |
| Msa0278570 | Msa1444560 | 0.800187 | 1.621502e-48 | -8.615850e-47 |
| Msa0296820 | Msa1444560 | 0.826627 | 2.445487e-54 | -8.615850e-47 |
| Msa0315690 | Msa1444560 | 0.800600 | 1.335541e-48 | -8.615850e-47 |
| Msa0317970 | Msa1444560 | 0.865450 | 5.855333e-65 | -8.615850e-47 |
| Msa0333650 | Msa1444560 | 0.800882 | 1.169734e-48 | -8.615850e-47 |
| Msa0336300 | Msa1444560 | 0.842755 | 2.130006e-58 | -8.615850e-47 |
| Msa1122860 | Msa1444560 | 0.800818 | 1.205412e-48 | -8.615850e-47 |
| Msa1162780 | Msa1444560 | 0.808471 | 3.047853e-50 | -8.615850e-47 |
| Msa1211230 | Msa1444560 | -0.813816 | 2.113697e-51 | -8.615850e-47 |
| Msa1219000 | Msa1444560 | 0.819394 | 1.188761e-52 | -8.615850e-47 |
| Msa0521010 | Msa1444560 | 0.841403 | 4.853996e-58 | -8.615850e-47 |
| Msa0521670 | Msa1444560 | 0.801806 | 7.569203e-49 | -8.615850e-47 |
| Msa0558360 | Msa1444560 | 0.803620 | 3.195194e-49 | -8.615850e-47 |
| Msa0569960 | Msa1444560 | 0.807971 | 3.895288e-50 | -8.615850e-47 |
| Msa0592080 | Msa1444560 | 0.800795 | 1.219007e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1444560 | MtrunA17_Chr7g0244531 | 86.500 | 200 | 0 | 1 | 1 | 173 | 1 | 200 | 4.95e-121 | 340 |
| Msa1444560 | MtrunA17_Chr4g0013121 | 82.022 | 178 | 5 | 1 | 1 | 151 | 1 | 178 | 5.31e-99 | 283 |
| Msa1444560 | MtrunA17_Chr3g0110921 | 61.500 | 200 | 50 | 1 | 1 | 173 | 15 | 214 | 1.32e-77 | 231 |
| Msa1444560 | MtrunA17_Chr3g0111031 | 58.678 | 121 | 33 | 1 | 29 | 149 | 89 | 192 | 4.90e-38 | 129 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1444560 | AT1G55520.2 | 80.500 | 200 | 12 | 1 | 1 | 173 | 1 | 200 | 7.33e-112 | 317 |
| Msa1444560 | AT1G55520.1 | 80.500 | 200 | 12 | 1 | 1 | 173 | 1 | 200 | 7.33e-112 | 317 |
| Msa1444560 | AT1G55520.4 | 80.500 | 200 | 12 | 1 | 1 | 173 | 1 | 200 | 7.33e-112 | 317 |
| Msa1444560 | AT3G13445.1 | 80.000 | 200 | 13 | 1 | 1 | 173 | 1 | 200 | 2.34e-111 | 315 |
| Msa1444560 | AT1G55520.3 | 80.226 | 177 | 8 | 1 | 1 | 150 | 1 | 177 | 2.84e-96 | 276 |
| Msa1444560 | AT3G13445.2 | 79.661 | 177 | 9 | 1 | 1 | 150 | 1 | 177 | 2.05e-95 | 275 |
Find 74 sgRNAs with CRISPR-Local
Find 320 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGCTTCCCCGCTAAGTTTA+AGG | 0.162066 | tig0030745:-40543 | Msa1444560:intron |
| TTGAGGGATCTGAGAGAAAT+TGG | 0.225121 | tig0030745:+43263 | None:intergenic |
| TAGCGGGGAAGCCCAGTTTC+TGG | 0.228240 | tig0030745:+40552 | None:intergenic |
| TTGTAATAAGGGGTATAAAA+AGG | 0.240480 | tig0030745:+43356 | None:intergenic |
| AAGAACCCTACTTAAAATTA+AGG | 0.244771 | tig0030745:+38785 | None:intergenic |
| TGAAGTGAGAATTTGTAATA+AGG | 0.258956 | tig0030745:+43344 | None:intergenic |
| GTATTGCTTATATTCGTATC+TGG | 0.259998 | tig0030745:-39700 | Msa1444560:CDS |
| ATATTGAGACAGAAGATATT+TGG | 0.277193 | tig0030745:-38992 | Msa1444560:three_prime_UTR |
| TGCTAGAATTATCCAGAAAC+TGG | 0.288731 | tig0030745:-40564 | Msa1444560:CDS |
| AGGTAGCCAACAACAGTAAA+AGG | 0.299090 | tig0030745:+38805 | None:intergenic |
| TATGAACCAGAGTTGTTTCC+AGG | 0.329714 | tig0030745:-39754 | Msa1444560:CDS |
| GAAGTGAGAATTTGTAATAA+GGG | 0.360756 | tig0030745:+43345 | None:intergenic |
| GATCTATCAAAGCATCCTTC+TGG | 0.372034 | tig0030745:-42855 | Msa1444560:CDS |
| GAGTGAGGTGCAATCAAAAT+TGG | 0.374093 | tig0030745:-40847 | Msa1444560:CDS |
| GAATATAAGCAATACTATCT+TGG | 0.376880 | tig0030745:+39708 | None:intergenic |
| TAAGAGTGAATAGGAGCTTA+TGG | 0.378139 | tig0030745:-42910 | Msa1444560:exon |
| ATCCAGTGCTTACTGAGTTC+AGG | 0.387503 | tig0030745:-39522 | Msa1444560:CDS |
| GTTGGCTCCCTTCCAATCCT+TGG | 0.414450 | tig0030745:+42883 | None:intergenic |
| TGAATGAAGAAGAGTGTGTT+TGG | 0.417642 | tig0030745:+43304 | None:intergenic |
| AGCCATGTGCATACCATTGT+TGG | 0.417991 | tig0030745:+39494 | None:intergenic |
| CAGAGAGGAACGTGGATTGT+AGG | 0.421347 | tig0030745:-39031 | Msa1444560:three_prime_UTR |
| CTGCTGTGATTATGAGGATC+CGG | 0.422520 | tig0030745:-41608 | Msa1444560:CDS |
| AGAAGAAATGATGGATCTGT+TGG | 0.437001 | tig0030745:+43424 | None:intergenic |
| TATACAAATTAAGAGTGAAT+AGG | 0.441761 | tig0030745:-42919 | Msa1444560:five_prime_UTR |
| AATATAAGCAATACTATCTT+GGG | 0.443178 | tig0030745:+39709 | None:intergenic |
| TCAGAAAATATATTTAAAAG+AGG | 0.444497 | tig0030745:-38879 | Msa1444560:three_prime_UTR |
| AAGAGTGTGTTTGGAGAGAG+CGG | 0.453797 | tig0030745:+43313 | None:intergenic |
| AAAAGAACGTACCATCTTGC+CGG | 0.456865 | tig0030745:+41554 | None:intergenic |
| ATCAAAATTGGCAGCAAGGA+AGG | 0.463520 | tig0030745:-40835 | Msa1444560:intron |
| ATATTTAAAAGAGGCTGAAA+AGG | 0.466815 | tig0030745:-38870 | Msa1444560:three_prime_UTR |
| TATTGCTTATATTCGTATCT+GGG | 0.466922 | tig0030745:-39699 | Msa1444560:CDS |
| AGTAGTACCTTAAACTTAGC+GGG | 0.472811 | tig0030745:+40536 | None:intergenic |
| AGAAATTGGAGTTGAAATGA+AGG | 0.475515 | tig0030745:+43277 | None:intergenic |
| TTTAAGATTCAGAACATTGT+CGG | 0.475654 | tig0030745:-40389 | Msa1444560:CDS |
| TGCCATTGGTAGGTCTGTAC+TGG | 0.475952 | tig0030745:-40876 | Msa1444560:intron |
| TGCAAGACCCTCCAGCCGTA+TGG | 0.489380 | tig0030745:+40346 | None:intergenic |
| TTCATTCGATAGATTAGTCC+TGG | 0.490443 | tig0030745:+39736 | None:intergenic |
| TTCCTGAACTCAGTAAGCAC+TGG | 0.491804 | tig0030745:+39520 | None:intergenic |
| GCAAGACCCTCCAGCCGTAT+GGG | 0.496807 | tig0030745:+40347 | None:intergenic |
| GCTTATGGCTGACCAAGGAT+TGG | 0.510788 | tig0030745:-42895 | Msa1444560:exon |
| GGATGCTTTGATAGATCCAC+AGG | 0.531550 | tig0030745:+42861 | None:intergenic |
| AGAGAGATTGTGAATGCGAT+TGG | 0.539251 | tig0030745:+43398 | None:intergenic |
| TGTCAAGTTCCCCATACGGC+TGG | 0.541848 | tig0030745:-40357 | Msa1444560:CDS |
| AGAGTGTGTTTGGAGAGAGC+GGG | 0.543632 | tig0030745:+43314 | None:intergenic |
| CTGTTGGATTATGAAGATAG+AGG | 0.546558 | tig0030745:+43440 | None:intergenic |
| AAAGAAACTCACTGAAGAGT+AGG | 0.550288 | tig0030745:+42825 | None:intergenic |
| TCTGGGAAAATTGTTCTGAC+AGG | 0.552768 | tig0030745:-39682 | Msa1444560:CDS |
| ATTAGTCCTGGAAACAACTC+TGG | 0.559444 | tig0030745:+39748 | None:intergenic |
| ATGGCTGACCAAGGATTGGA+AGG | 0.560659 | tig0030745:-42891 | Msa1444560:CDS |
| TGCAATCAAAATTGGCAGCA+AGG | 0.561827 | tig0030745:-40839 | Msa1444560:CDS |
| AAGTGAGAATTTGTAATAAG+GGG | 0.563510 | tig0030745:+43346 | None:intergenic |
| GAAATTGGAGTTGAAATGAA+GGG | 0.565346 | tig0030745:+43278 | None:intergenic |
| AGATAGAGGAGAGAGAATGA+AGG | 0.566625 | tig0030745:+43454 | None:intergenic |
| CAAGTTCCCCATACGGCTGG+AGG | 0.572877 | tig0030745:-40354 | Msa1444560:CDS |
| GATTGGAAGAGAAGAAATGA+TGG | 0.579792 | tig0030745:+43415 | None:intergenic |
| GTGATGTCAAGTTCCCCATA+CGG | 0.581797 | tig0030745:-40361 | Msa1444560:CDS |
| AATTGTTCTGACAGGAGCCA+AGG | 0.589296 | tig0030745:-39674 | Msa1444560:intron |
| AAGTAGTACCTTAAACTTAG+CGG | 0.590355 | tig0030745:+40535 | None:intergenic |
| CACTGGATATATGTTCTCAA+AGG | 0.592156 | tig0030745:+39537 | None:intergenic |
| TGCTGTGATTATGAGGATCC+GGG | 0.596602 | tig0030745:-41607 | Msa1444560:CDS |
| TATCATCATGAGTAAGAGCA+AGG | 0.599234 | tig0030745:-39062 | Msa1444560:three_prime_UTR |
| GAGGGTCTTGCATATTCCCA+CGG | 0.600585 | tig0030745:-40335 | Msa1444560:CDS |
| CAAGACCCTCCAGCCGTATG+GGG | 0.611024 | tig0030745:+40348 | None:intergenic |
| AAGTTCCCCATACGGCTGGA+GGG | 0.615249 | tig0030745:-40353 | Msa1444560:CDS |
| GCTTTGATAGATCCACAGGT+TGG | 0.629665 | tig0030745:+42865 | None:intergenic |
| TACACTTGAGAAAGCACCGT+GGG | 0.640895 | tig0030745:+40319 | None:intergenic |
| ATTGGAAGGGAGCCAACCTG+TGG | 0.653530 | tig0030745:-42877 | Msa1444560:CDS |
| GCTAGAATTATCCAGAAACT+GGG | 0.655602 | tig0030745:-40563 | Msa1444560:CDS |
| TGGCTGACCAAGGATTGGAA+GGG | 0.658521 | tig0030745:-42890 | Msa1444560:CDS |
| TAGGAGCTTATGGCTGACCA+AGG | 0.664090 | tig0030745:-42900 | Msa1444560:exon |
| GTAGTACCTTAAACTTAGCG+GGG | 0.665555 | tig0030745:+40537 | None:intergenic |
| AGAGTAGGCACAATTCCAGA+AGG | 0.669455 | tig0030745:+42840 | None:intergenic |
| CTGTACTGGAGCTAAGAGTG+AGG | 0.686066 | tig0030745:-40862 | Msa1444560:CDS |
| TTACACTTGAGAAAGCACCG+TGG | 0.825503 | tig0030745:+40318 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTAAAATGTTCATAA+TGG | - | tig0030745:39992-40011 | Msa1444560:intron | 10.0% |
| !! | TGATAAATATAAAATAAATC+TGG | + | tig0030745:42174-42193 | None:intergenic | 10.0% |
| !! | TATACTATATAAAAGAAATT+AGG | + | tig0030745:42397-42416 | None:intergenic | 10.0% |
| !! | GTAAAAATATAAAATTACAT+GGG | + | tig0030745:42591-42610 | None:intergenic | 10.0% |
| !!! | TTTTAATTTCAATTTTGTTT+AGG | - | tig0030745:42640-42659 | Msa1444560:intron | 10.0% |
| !!! | TTTTTGTATGAAATTTTTGA+GGG | + | tig0030745:38977-38996 | None:intergenic | 15.0% |
| !!! | TTTTTTGTATGAAATTTTTG+AGG | + | tig0030745:38978-38997 | None:intergenic | 15.0% |
| !!! | TTAAGAATTTTTGTTTGTTT+TGG | + | tig0030745:39004-39023 | None:intergenic | 15.0% |
| !!! | ATTCTTAATTTTCACTTTTA+AGG | - | tig0030745:39016-39035 | Msa1444560:three_prime_UTR | 15.0% |
| !! | ATTAGATGAAAATTTCAAAA+GGG | + | tig0030745:39085-39104 | None:intergenic | 15.0% |
| !! | AATTAGATGAAAATTTCAAA+AGG | + | tig0030745:39086-39105 | None:intergenic | 15.0% |
| !!! | GACAAAAAATTGTTTTTTTA+AGG | - | tig0030745:39108-39127 | Msa1444560:intron | 15.0% |
| !!! | CTTTGTTTTTTAATGATTAT+TGG | - | tig0030745:39178-39197 | Msa1444560:intron | 15.0% |
| !!! | TTGATTTTGTAATTAAGTTA+AGG | - | tig0030745:39223-39242 | Msa1444560:intron | 15.0% |
| !!! | TCATTTTCTCAAATTATTAT+TGG | + | tig0030745:39563-39582 | None:intergenic | 15.0% |
| !!! | TAAAATTAACTCTTTTCTAA+TGG | - | tig0030745:39736-39755 | Msa1444560:CDS | 15.0% |
| !!! | AAAATTAACTCTTTTCTAAT+GGG | - | tig0030745:39737-39756 | Msa1444560:CDS | 15.0% |
| !!! | AAAAATGTGCTATTTATATT+TGG | - | tig0030745:40199-40218 | Msa1444560:intron | 15.0% |
| !!! | TGGAATTTAATTTTATTGAA+AGG | - | tig0030745:40879-40898 | Msa1444560:intron | 15.0% |
| !!! | TTTTATGCACAAAATATATT+GGG | + | tig0030745:41185-41204 | None:intergenic | 15.0% |
| !!! | TTTTTATGCACAAAATATAT+TGG | + | tig0030745:41186-41205 | None:intergenic | 15.0% |
| !!! | TAGTTACTTATATCTTTTTA+AGG | - | tig0030745:42245-42264 | Msa1444560:intron | 15.0% |
| !!! | AGTTACTTATATCTTTTTAA+GGG | - | tig0030745:42246-42265 | Msa1444560:intron | 15.0% |
| !! | GGTAAAAATATAAAATTACA+TGG | + | tig0030745:42592-42611 | None:intergenic | 15.0% |
| !! | TCAGAAAATATATTTAAAAG+AGG | - | tig0030745:43342-43361 | Msa1444560:five_prime_UTR | 15.0% |
| !!! | GTGATTTTAAAGAAGTATTA+CGG | + | tig0030745:39050-39069 | None:intergenic | 20.0% |
| !!! | TGATGTTTTTATAACCTAAT+TGG | - | tig0030745:39148-39167 | Msa1444560:intron | 20.0% |
| !!! | TTGTAATTAAGTTAAGGTTT+TGG | - | tig0030745:39229-39248 | Msa1444560:intron | 20.0% |
| !! | TATACAAATTAAGAGTGAAT+AGG | - | tig0030745:39302-39321 | Msa1444560:intron | 20.0% |
| !!! | AAATTAACTCTTTTCTAATG+GGG | - | tig0030745:39738-39757 | Msa1444560:CDS | 20.0% |
| !! | TTTATGCACAAAATATATTG+GGG | + | tig0030745:41184-41203 | None:intergenic | 20.0% |
| !! | TGTGCATAAAAATAAAAATG+AGG | - | tig0030745:41194-41213 | Msa1444560:intron | 20.0% |
| !! | AAAAAGATATAAGTAACTAC+TGG | + | tig0030745:42244-42263 | None:intergenic | 20.0% |
| !!! | TGAGTTTTTAAAATTCAAAC+TGG | - | tig0030745:42270-42289 | Msa1444560:intron | 20.0% |
| !! | AATATAAGCAATACTATCTT+GGG | + | tig0030745:42515-42534 | None:intergenic | 20.0% |
| !!! | ATTTTCTTGGTTTTGTATTA+TGG | - | tig0030745:42931-42950 | Msa1444560:intron | 20.0% |
| !! | TGTAATAAGGGGTATAAAAA+GGG | + | tig0030745:38867-38886 | None:intergenic | 25.0% |
| !! | TTGTAATAAGGGGTATAAAA+AGG | + | tig0030745:38868-38887 | None:intergenic | 25.0% |
| ! | AAGTGAGAATTTGTAATAAG+GGG | + | tig0030745:38878-38897 | None:intergenic | 25.0% |
| ! | GAAGTGAGAATTTGTAATAA+GGG | + | tig0030745:38879-38898 | None:intergenic | 25.0% |
| ! | TGAAGTGAGAATTTGTAATA+AGG | + | tig0030745:38880-38899 | None:intergenic | 25.0% |
| ! | AACAAAGAAAAAGACCAATT+AGG | + | tig0030745:39165-39184 | None:intergenic | 25.0% |
| ! | TTCTTTATTACAAATGAGCA+TGG | + | tig0030745:39494-39513 | None:intergenic | 25.0% |
| !! | TAAAGAGACAAGCTAAATTT+TGG | + | tig0030745:39774-39793 | None:intergenic | 25.0% |
| !!! | ATACGAGTTTGTTGATAATT+CGG | - | tig0030745:39803-39822 | Msa1444560:intron | 25.0% |
| ! | CGTTGGTATAAAACTTTATT+GGG | + | tig0030745:39950-39969 | None:intergenic | 25.0% |
| ! | TCGTTGGTATAAAACTTTAT+TGG | + | tig0030745:39951-39970 | None:intergenic | 25.0% |
| ! | GTTTGTATCAATAGTAATAC+TGG | + | tig0030745:40453-40472 | None:intergenic | 25.0% |
| ! | TTAAATGACTCCAAAATTCT+AGG | + | tig0030745:40811-40830 | None:intergenic | 25.0% |
| ! | AGAAAAAGCAGTAAACAATT+TGG | + | tig0030745:41243-41262 | None:intergenic | 25.0% |
| ! | CAAAAACAAGCTAAGATTAA+TGG | + | tig0030745:41502-41521 | None:intergenic | 25.0% |
| !! | TTTAAGATTCAGAACATTGT+CGG | - | tig0030745:41832-41851 | Msa1444560:intron | 25.0% |
| !!! | AAATTGTAGTGGCTATTTTA+AGG | + | tig0030745:42214-42233 | None:intergenic | 25.0% |
| ! | CTGGAAAAAAAAAATTGTAG+TGG | + | tig0030745:42225-42244 | None:intergenic | 25.0% |
| !!! | TTTTAAAATTCAAACTGGAG+TGG | - | tig0030745:42275-42294 | Msa1444560:intron | 25.0% |
| !! | TTTAAAATTCAAACTGGAGT+GGG | - | tig0030745:42276-42295 | Msa1444560:intron | 25.0% |
| ! | GAATATAAGCAATACTATCT+TGG | + | tig0030745:42516-42535 | None:intergenic | 25.0% |
| ! | TATTGCTTATATTCGTATCT+GGG | - | tig0030745:42522-42541 | Msa1444560:intron | 25.0% |
| ! | AAAACATTAGTAGTACAATG+AGG | + | tig0030745:42624-42643 | None:intergenic | 25.0% |
| ! | GATATACATGTTGTAATTAC+TGG | - | tig0030745:42780-42799 | Msa1444560:intron | 25.0% |
| ! | AAGCAAAACAAAAGACAAAA+TGG | + | tig0030745:42828-42847 | None:intergenic | 25.0% |
| ! | TATCATGAGATACGTATTAT+TGG | - | tig0030745:43131-43150 | Msa1444560:intron | 25.0% |
| ! | ATATTGAGACAGAAGATATT+TGG | - | tig0030745:43229-43248 | Msa1444560:five_prime_UTR | 25.0% |
| ! | ATATTTAAAAGAGGCTGAAA+AGG | - | tig0030745:43351-43370 | Msa1444560:five_prime_UTR | 25.0% |
| ! | AAGAACCCTACTTAAAATTA+AGG | + | tig0030745:43439-43458 | None:intergenic | 25.0% |
| AATGAAGGTAAAAACAGGTT+GGG | + | tig0030745:38755-38774 | None:intergenic | 30.0% | |
| GAAATTGGAGTTGAAATGAA+GGG | + | tig0030745:38946-38965 | None:intergenic | 30.0% | |
| AGAAATTGGAGTTGAAATGA+AGG | + | tig0030745:38947-38966 | None:intergenic | 30.0% | |
| !! | TTCAAAAGGGTATTTAGATC+TGG | + | tig0030745:39072-39091 | None:intergenic | 30.0% |
| TTATTGGATGTTTAGAGATC+TGG | - | tig0030745:39194-39213 | Msa1444560:intron | 30.0% | |
| TATTGGATGTTTAGAGATCT+GGG | - | tig0030745:39195-39214 | Msa1444560:intron | 30.0% | |
| !! | GTACTGATTAATGTGGAATA+TGG | - | tig0030745:39251-39270 | Msa1444560:intron | 30.0% |
| !! | CTGGTTTGGATAACTAAATA+AGG | + | tig0030745:39661-39680 | None:intergenic | 30.0% |
| TACTCTCAATATCATACATG+GGG | + | tig0030745:39696-39715 | None:intergenic | 30.0% | |
| GTACTCTCAATATCATACAT+GGG | + | tig0030745:39697-39716 | None:intergenic | 30.0% | |
| AGTACTCTCAATATCATACA+TGG | + | tig0030745:39698-39717 | None:intergenic | 30.0% | |
| AATTGACAAATACGGAAAAC+AGG | + | tig0030745:39873-39892 | None:intergenic | 30.0% | |
| ! | ACTGATAACTGCTCTTTTTA+AGG | - | tig0030745:39920-39939 | Msa1444560:intron | 30.0% |
| ! | CTGATAACTGCTCTTTTTAA+GGG | - | tig0030745:39921-39940 | Msa1444560:intron | 30.0% |
| !! | TGATAACTGCTCTTTTTAAG+GGG | - | tig0030745:39922-39941 | Msa1444560:intron | 30.0% |
| !! | GAGAGTATTTATATTCCAGT+TGG | - | tig0030745:40014-40033 | Msa1444560:intron | 30.0% |
| TATTGTGTCAACTGTCAATT+TGG | - | tig0030745:40228-40247 | Msa1444560:intron | 30.0% | |
| TGAAAAACAAAACTTGCCTT+GGG | + | tig0030745:40310-40329 | None:intergenic | 30.0% | |
| TTGAAAAACAAAACTTGCCT+TGG | + | tig0030745:40311-40330 | None:intergenic | 30.0% | |
| !! | ACTTGGTTTTTGTTTAGTTG+TGG | - | tig0030745:40396-40415 | Msa1444560:intron | 30.0% |
| !! | TTTTGTTTAGTTGTGGAGTT+TGG | - | tig0030745:40403-40422 | Msa1444560:intron | 30.0% |
| ! | AAAAAAGTGTAGTGCATAAG+TGG | + | tig0030745:40475-40494 | None:intergenic | 30.0% |
| !! | AAAATAAGTGCCGTTGTTTT+TGG | + | tig0030745:40642-40661 | None:intergenic | 30.0% |
| ! | TTGTACTTGGTTGTTTGTTT+TGG | - | tig0030745:40752-40771 | Msa1444560:intron | 30.0% |
| TGAAAGGACTGTAATGATTA+TGG | - | tig0030745:40895-40914 | Msa1444560:intron | 30.0% | |
| TAATGATTATGGTCAGAGAT+AGG | - | tig0030745:40906-40925 | Msa1444560:intron | 30.0% | |
| GCATAGATACTATGTTAAGA+GGG | - | tig0030745:41145-41164 | Msa1444560:intron | 30.0% | |
| ! | ACTATGTTAAGAGGGTATAA+TGG | - | tig0030745:41153-41172 | Msa1444560:intron | 30.0% |
| !!! | ATTGTTTACTGCTTTTTCTG+AGG | - | tig0030745:41244-41263 | Msa1444560:intron | 30.0% |
| !!! | TTGTTTACTGCTTTTTCTGA+GGG | - | tig0030745:41245-41264 | Msa1444560:intron | 30.0% |
| ! | TTTAAGCATGTTGCTTGTTA+TGG | - | tig0030745:41299-41318 | Msa1444560:intron | 30.0% |
| !! | TTAAGCATGTTGCTTGTTAT+GGG | - | tig0030745:41300-41319 | Msa1444560:intron | 30.0% |
| !!! | AATGCTTTTTTGATTGCCAT+TGG | - | tig0030745:41331-41350 | Msa1444560:intron | 30.0% |
| GAGAAACTTCAATAGTACAA+AGG | + | tig0030745:41448-41467 | None:intergenic | 30.0% | |
| CTTAAACCAGCAATGATATT+TGG | - | tig0030745:41556-41575 | Msa1444560:intron | 30.0% | |
| TAATTCTAGCATACTGAACA+AGG | + | tig0030745:41648-41667 | None:intergenic | 30.0% | |
| AAGTAGTACCTTAAACTTAG+CGG | + | tig0030745:41689-41708 | None:intergenic | 30.0% | |
| ! | TTCCTTTTGTATTGTGCTTT+AGG | - | tig0030745:41807-41826 | Msa1444560:intron | 30.0% |
| ATCCTAAAGCACAATACAAA+AGG | + | tig0030745:41812-41831 | None:intergenic | 30.0% | |
| ACTTCAGGTATATAATCCAA+GGG | + | tig0030745:42030-42049 | None:intergenic | 30.0% | |
| TCTGTAAAATACTAGACTTC+AGG | + | tig0030745:42045-42064 | None:intergenic | 30.0% | |
| AATCTGGATTTGTGATTGTT+TGG | + | tig0030745:42158-42177 | None:intergenic | 30.0% | |
| TTAAAATTCAAACTGGAGTG+GGG | - | tig0030745:42277-42296 | Msa1444560:intron | 30.0% | |
| GGTACATGTATAGATATTGA+TGG | - | tig0030745:42328-42347 | Msa1444560:intron | 30.0% | |
| ATGTATAGATATTGATGGAG+AGG | - | tig0030745:42333-42352 | Msa1444560:intron | 30.0% | |
| TGTATAGATATTGATGGAGA+GGG | - | tig0030745:42334-42353 | Msa1444560:intron | 30.0% | |
| GTATTGCTTATATTCGTATC+TGG | - | tig0030745:42521-42540 | Msa1444560:intron | 30.0% | |
| ! | ATATCCACTACCTTTTCAAT+TGG | - | tig0030745:42752-42771 | Msa1444560:intron | 30.0% |
| ATATCCAATGCCAATTGAAA+AGG | + | tig0030745:42765-42784 | None:intergenic | 30.0% | |
| ATGTTGTAATTACTGGACTA+GGG | - | tig0030745:42787-42806 | Msa1444560:intron | 30.0% | |
| TCGTAGTTTAATCCAACATT+CGG | - | tig0030745:43027-43046 | Msa1444560:intron | 30.0% | |
| !! | TGGCTACCTTAATTTTAAGT+AGG | - | tig0030745:43430-43449 | Msa1444560:five_prime_UTR | 30.0% |
| !! | GGCTACCTTAATTTTAAGTA+GGG | - | tig0030745:43431-43450 | Msa1444560:five_prime_UTR | 30.0% |
| ATGAAGGTAAAAACAGGTTG+GGG | + | tig0030745:38754-38773 | None:intergenic | 35.0% | |
| GAATGAAGGTAAAAACAGGT+TGG | + | tig0030745:38756-38775 | None:intergenic | 35.0% | |
| GAGAGAATGAAGGTAAAAAC+AGG | + | tig0030745:38760-38779 | None:intergenic | 35.0% | |
| CTGTTGGATTATGAAGATAG+AGG | + | tig0030745:38784-38803 | None:intergenic | 35.0% | |
| !! | AGAAGAAATGATGGATCTGT+TGG | + | tig0030745:38800-38819 | None:intergenic | 35.0% |
| GATTGGAAGAGAAGAAATGA+TGG | + | tig0030745:38809-38828 | None:intergenic | 35.0% | |
| ! | TGAATGAAGAAGAGTGTGTT+TGG | + | tig0030745:38920-38939 | None:intergenic | 35.0% |
| !!! | GGTTTTGGTACTGATTAATG+TGG | - | tig0030745:39244-39263 | Msa1444560:intron | 35.0% |
| CTGATTAATGTGGAATATGG+TGG | - | tig0030745:39254-39273 | Msa1444560:intron | 35.0% | |
| TAAGAGTGAATAGGAGCTTA+TGG | - | tig0030745:39311-39330 | Msa1444560:intron | 35.0% | |
| AAAGAAACTCACTGAAGAGT+AGG | + | tig0030745:39399-39418 | None:intergenic | 35.0% | |
| AAGCATGAGAAGATAATCTG+AGG | - | tig0030745:39444-39463 | Msa1444560:intron | 35.0% | |
| !! | TTTAGCTTGTCTCTTTAGCT+TGG | - | tig0030745:39777-39796 | Msa1444560:intron | 35.0% |
| TTTCCGTATTTGTCAATTGC+TGG | - | tig0030745:39875-39894 | Msa1444560:intron | 35.0% | |
| GAAGCTTAGTGAATGAGATT+TGG | - | tig0030745:39969-39988 | Msa1444560:intron | 35.0% | |
| ATTCCAGTTGGAATTACTTG+TGG | - | tig0030745:40026-40045 | Msa1444560:intron | 35.0% | |
| TGTCAATTTGGACTGTAAGT+TGG | - | tig0030745:40240-40259 | Msa1444560:intron | 35.0% | |
| AATTCCAATGAAGGTTGACT+TGG | - | tig0030745:40379-40398 | Msa1444560:CDS | 35.0% | |
| AAAACCAAGTCAACCTTCAT+TGG | + | tig0030745:40386-40405 | None:intergenic | 35.0% | |
| TTTCACAACCAACTTGTACT+TGG | - | tig0030745:40739-40758 | Msa1444560:intron | 35.0% | |
| ACAAACAACCAAGTACAAGT+TGG | + | tig0030745:40750-40769 | None:intergenic | 35.0% | |
| !!! | TACTTGGTTGTTTGTTTTGG+TGG | - | tig0030745:40755-40774 | Msa1444560:intron | 35.0% |
| ! | CAAGAGTTGTCCTAGAATTT+TGG | - | tig0030745:40798-40817 | Msa1444560:intron | 35.0% |
| AGAATGGACGGAAGAAAAAA+AGG | - | tig0030745:41109-41128 | Msa1444560:intron | 35.0% | |
| CTTAACATAGTATCTATGCC+TGG | + | tig0030745:41144-41163 | None:intergenic | 35.0% | |
| GGCATAGATACTATGTTAAG+AGG | - | tig0030745:41144-41163 | Msa1444560:intron | 35.0% | |
| !!! | CTTTTTTGATTGCCATTGGT+AGG | - | tig0030745:41335-41354 | Msa1444560:intron | 35.0% |
| TATTGAAGTTTCTCAAGTCG+AGG | - | tig0030745:41454-41473 | Msa1444560:intron | 35.0% | |
| ACAAGCTAAGATTAATGGCA+AGG | + | tig0030745:41497-41516 | None:intergenic | 35.0% | |
| GTTTAGCCAAATATCATTGC+TGG | + | tig0030745:41565-41584 | None:intergenic | 35.0% | |
| TGCTAGAATTATCCAGAAAC+TGG | - | tig0030745:41657-41676 | Msa1444560:intron | 35.0% | |
| GCTAGAATTATCCAGAAACT+GGG | - | tig0030745:41658-41677 | Msa1444560:intron | 35.0% | |
| AGTAGTACCTTAAACTTAGC+GGG | + | tig0030745:41688-41707 | None:intergenic | 35.0% | |
| TTATTTCCTCAAATTCGCCA+GGG | + | tig0030745:41959-41978 | None:intergenic | 35.0% | |
| ATTATTTCCTCAAATTCGCC+AGG | + | tig0030745:41960-41979 | None:intergenic | 35.0% | |
| CTTCAGGTATATAATCCAAG+GGG | + | tig0030745:42029-42048 | None:intergenic | 35.0% | |
| GACTTCAGGTATATAATCCA+AGG | + | tig0030745:42031-42050 | None:intergenic | 35.0% | |
| ! | AGTATCTAAAGTGTGCACTA+TGG | - | tig0030745:42090-42109 | Msa1444560:intron | 35.0% |
| ! | TTCATTCGATAGATTAGTCC+TGG | + | tig0030745:42488-42507 | None:intergenic | 35.0% |
| AGTACAATGAGGCAGAAAAA+TGG | + | tig0030745:42613-42632 | None:intergenic | 35.0% | |
| CACTGGATATATGTTCTCAA+AGG | + | tig0030745:42687-42706 | None:intergenic | 35.0% | |
| AGTTCAGGAAAAACCAACAA+TGG | - | tig0030745:42714-42733 | Msa1444560:intron | 35.0% | |
| AATGCCAATTGAAAAGGTAG+TGG | + | tig0030745:42759-42778 | None:intergenic | 35.0% | |
| ! | ACTACCTTTTCAATTGGCAT+TGG | - | tig0030745:42758-42777 | Msa1444560:intron | 35.0% |
| CATGTTGTAATTACTGGACT+AGG | - | tig0030745:42786-42805 | Msa1444560:intron | 35.0% | |
| ! | TGAACTAGTCAGCATTTTCT+TGG | - | tig0030745:42918-42937 | Msa1444560:five_prime_UTR | 35.0% |
| TTGGATTAAACTACGACTGA+GGG | + | tig0030745:43023-43042 | None:intergenic | 35.0% | |
| TTAATCCAACATTCGGCATT+TGG | - | tig0030745:43034-43053 | Msa1444560:intron | 35.0% | |
| ACATCAAAATGGGTCCTTTA+AGG | + | tig0030745:43078-43097 | None:intergenic | 35.0% | |
| !! | ACCCATTTTGATGTGACAAT+GGG | - | tig0030745:43084-43103 | Msa1444560:intron | 35.0% |
| ACCCATTGTCACATCAAAAT+GGG | + | tig0030745:43088-43107 | None:intergenic | 35.0% | |
| TACCCATTGTCACATCAAAA+TGG | + | tig0030745:43089-43108 | None:intergenic | 35.0% | |
| TATCATCATGAGTAAGAGCA+AGG | - | tig0030745:43159-43178 | Msa1444560:intron | 35.0% | |
| ! | TGATTTTGTTCTGCTTGTGA+TGG | - | tig0030745:43269-43288 | Msa1444560:five_prime_UTR | 35.0% |
| ! | TTGAGTCCTTTTACTGTTGT+TGG | - | tig0030745:43410-43429 | Msa1444560:five_prime_UTR | 35.0% |
| AGATAGAGGAGAGAGAATGA+AGG | + | tig0030745:38770-38789 | None:intergenic | 40.0% | |
| AGAGAGATTGTGAATGCGAT+TGG | + | tig0030745:38826-38845 | None:intergenic | 40.0% | |
| TTGAGGGATCTGAGAGAAAT+TGG | + | tig0030745:38961-38980 | None:intergenic | 40.0% | |
| ! | GATCTATCAAAGCATCCTTC+TGG | - | tig0030745:39366-39385 | Msa1444560:intron | 40.0% |
| CACATGTATCTGTGTCGTAT+TGG | - | tig0030745:39599-39618 | Msa1444560:intron | 40.0% | |
| ! | TATCTGTGTCGTATTGGTGT+CGG | - | tig0030745:39605-39624 | Msa1444560:intron | 40.0% |
| GTATAGATATGCCTTTGACG+TGG | - | tig0030745:39635-39654 | Msa1444560:intron | 40.0% | |
| ACTAAATAAGGCCACGTCAA+AGG | + | tig0030745:39649-39668 | None:intergenic | 40.0% | |
| GCATGTGACTTTCCTATACA+TGG | - | tig0030745:39842-39861 | Msa1444560:intron | 40.0% | |
| AAACAGGACTGACCATGTAT+AGG | + | tig0030745:39857-39876 | None:intergenic | 40.0% | |
| GCTCCAGCAATTGACAAATA+CGG | + | tig0030745:39881-39900 | None:intergenic | 40.0% | |
| TCTCATTCACTAAGCTTCGT+TGG | + | tig0030745:39967-39986 | None:intergenic | 40.0% | |
| ACACCACAAGTAATTCCAAC+TGG | + | tig0030745:40032-40051 | None:intergenic | 40.0% | |
| ! | CTTGTGGTGTATTCTTTTCC+AGG | - | tig0030745:40042-40061 | Msa1444560:intron | 40.0% |
| CACACACAAGAACATAAACC+TGG | + | tig0030745:40063-40082 | None:intergenic | 40.0% | |
| TAATGCAGAGTACAATCCCA+AGG | - | tig0030745:40291-40310 | Msa1444560:intron | 40.0% | |
| TTGCACCACAATTCCAATGA+AGG | - | tig0030745:40370-40389 | Msa1444560:CDS | 40.0% | |
| GTCAACCTTCATTGGAATTG+TGG | + | tig0030745:40378-40397 | None:intergenic | 40.0% | |
| GAAATCAGCACTGCAGAAAA+AGG | + | tig0030745:40566-40585 | None:intergenic | 40.0% | |
| ! | GTTTTGCTGCTGTGATTATG+AGG | - | tig0030745:40607-40626 | Msa1444560:intron | 40.0% |
| !!! | ACGGCACTTATTTTTGCATC+CGG | - | tig0030745:40648-40667 | Msa1444560:intron | 40.0% |
| !! | TATTTTTGCATCCGGCAAGA+TGG | - | tig0030745:40656-40675 | Msa1444560:intron | 40.0% |
| AAAAGAACGTACCATCTTGC+CGG | + | tig0030745:40670-40689 | None:intergenic | 40.0% | |
| TTGTGATACAGGCCTTGATT+GGG | + | tig0030745:40781-40800 | None:intergenic | 40.0% | |
| TAGGACAACTCTTGTGATAC+AGG | + | tig0030745:40792-40811 | None:intergenic | 40.0% | |
| TTGGAGTCATTTAACCACTG+CGG | - | tig0030745:40817-40836 | Msa1444560:intron | 40.0% | |
| ! | CGTTGACTAAATCTCCATTC+GGG | + | tig0030745:40955-40974 | None:intergenic | 40.0% |
| !! | GCGTTGACTAAATCTCCATT+CGG | + | tig0030745:40956-40975 | None:intergenic | 40.0% |
| GGAGATTTAGTCAACGCATA+TGG | - | tig0030745:40959-40978 | Msa1444560:intron | 40.0% | |
| ATTGACCATCTAGCACTATG+AGG | + | tig0030745:41008-41027 | None:intergenic | 40.0% | |
| ATAGTGCTAGATGGTCAATG+AGG | - | tig0030745:41009-41028 | Msa1444560:intron | 40.0% | |
| TAGTGCTAGATGGTCAATGA+GGG | - | tig0030745:41010-41029 | Msa1444560:intron | 40.0% | |
| ATCACATATCTACAGATCCG+AGG | + | tig0030745:41064-41083 | None:intergenic | 40.0% | |
| TCGGATCTGTAGATATGTGA+TGG | - | tig0030745:41063-41082 | Msa1444560:intron | 40.0% | |
| !! | TATGTGATGGACGAATGCAA+AGG | - | tig0030745:41076-41095 | Msa1444560:intron | 40.0% |
| !! | ATGTGATGGACGAATGCAAA+GGG | - | tig0030745:41077-41096 | Msa1444560:intron | 40.0% |
| !! | AAAAAAAGGTGTCTCTTGCC+AGG | - | tig0030745:41123-41142 | Msa1444560:intron | 40.0% |
| !! | CATTGCACAAGTACTGATAG+AGG | + | tig0030745:41271-41290 | None:intergenic | 40.0% |
| GAGTGAGGTGCAATCAAAAT+TGG | - | tig0030745:41374-41393 | Msa1444560:intron | 40.0% | |
| TGCAATCAAAATTGGCAGCA+AGG | - | tig0030745:41382-41401 | Msa1444560:intron | 40.0% | |
| ATCAAAATTGGCAGCAAGGA+AGG | - | tig0030745:41386-41405 | Msa1444560:intron | 40.0% | |
| GTAGTACCTTAAACTTAGCG+GGG | + | tig0030745:41687-41706 | None:intergenic | 40.0% | |
| CTATTGCTTTCTATTTCCCC+TGG | - | tig0030745:41939-41958 | Msa1444560:intron | 40.0% | |
| TATTTCCTCAAATTCGCCAG+GGG | + | tig0030745:41958-41977 | None:intergenic | 40.0% | |
| TTGTGATTGTTTGGCTGTCA+TGG | + | tig0030745:42149-42168 | None:intergenic | 40.0% | |
| TCAGTCACAATGCTTGTGTA+TGG | - | tig0030745:42307-42326 | Msa1444560:intron | 40.0% | |
| ! | ATGTTGAACTTGCTTGTTCC+TGG | - | tig0030745:42438-42457 | Msa1444560:intron | 40.0% |
| ! | TATGAACCAGAGTTGTTTCC+AGG | - | tig0030745:42467-42486 | Msa1444560:intron | 40.0% |
| ATTAGTCCTGGAAACAACTC+TGG | + | tig0030745:42476-42495 | None:intergenic | 40.0% | |
| TCTGGGAAAATTGTTCTGAC+AGG | - | tig0030745:42539-42558 | Msa1444560:intron | 40.0% | |
| GTATCACAAGACCAATACCT+TGG | + | tig0030745:42567-42586 | None:intergenic | 40.0% | |
| AACCAACAATGGTATGCACA+TGG | - | tig0030745:42725-42744 | Msa1444560:intron | 40.0% | |
| ! | AAGCTGACAGTTGATGTTGA+TGG | + | tig0030745:42855-42874 | None:intergenic | 40.0% |
| AGCTCAGTCCAATCAAATGT+TGG | - | tig0030745:42966-42985 | Msa1444560:intron | 40.0% | |
| ! | TCCAATCAAATGTTGGCTGT+TGG | - | tig0030745:42973-42992 | Msa1444560:intron | 40.0% |
| TCCAACAGCCAACATTTGAT+TGG | + | tig0030745:42977-42996 | None:intergenic | 40.0% | |
| ! | AATGTTGGCTGTTGGATTAG+CGG | - | tig0030745:42981-43000 | Msa1444560:intron | 40.0% |
| GTTGGATTAAACTACGACTG+AGG | + | tig0030745:43024-43043 | None:intergenic | 40.0% | |
| !! | GACCCATTTTGATGTGACAA+TGG | - | tig0030745:43083-43102 | Msa1444560:intron | 40.0% |
| ! | TGAGTAAGAGCAAGGTTTTC+TGG | - | tig0030745:43167-43186 | Msa1444560:intron | 40.0% |
| AGGTAGCCAACAACAGTAAA+AGG | + | tig0030745:43419-43438 | None:intergenic | 40.0% | |
| ! | AAGAGTGTGTTTGGAGAGAG+CGG | + | tig0030745:38911-38930 | None:intergenic | 45.0% |
| GCTTTGATAGATCCACAGGT+TGG | + | tig0030745:39359-39378 | None:intergenic | 45.0% | |
| GGATGCTTTGATAGATCCAC+AGG | + | tig0030745:39363-39382 | None:intergenic | 45.0% | |
| AGAGTAGGCACAATTCCAGA+AGG | + | tig0030745:39384-39403 | None:intergenic | 45.0% | |
| GGCATCACTAATAGCTGGTT+TGG | + | tig0030745:39675-39694 | None:intergenic | 45.0% | |
| GCTGGAGCATACAGTTTGAT+TGG | - | tig0030745:39893-39912 | Msa1444560:intron | 45.0% | |
| TATGCTCAATGTGCTTGACG+CGG | - | tig0030745:40126-40145 | Msa1444560:intron | 45.0% | |
| CTGCTGTGATTATGAGGATC+CGG | - | tig0030745:40613-40632 | Msa1444560:intron | 45.0% | |
| TGCTGTGATTATGAGGATCC+GGG | - | tig0030745:40614-40633 | Msa1444560:intron | 45.0% | |
| !!! | TTGTTTTGGTGGCCCAATCA+AGG | - | tig0030745:40766-40785 | Msa1444560:intron | 45.0% |
| CTTGTGATACAGGCCTTGAT+TGG | + | tig0030745:40782-40801 | None:intergenic | 45.0% | |
| TGGAGTCATTTAACCACTGC+GGG | - | tig0030745:40818-40837 | Msa1444560:intron | 45.0% | |
| TAGCTGAGAAGGTGATGTGA+TGG | - | tig0030745:40846-40865 | Msa1444560:CDS | 45.0% | |
| ! | ATGGTTGTGTTGCTCTAGTG+AGG | - | tig0030745:40978-40997 | Msa1444560:intron | 45.0% |
| GTAGGAGGTGAAATGAACCT+CGG | - | tig0030745:41044-41063 | Msa1444560:intron | 45.0% | |
| !! | TGTGATGGACGAATGCAAAG+GGG | - | tig0030745:41078-41097 | Msa1444560:intron | 45.0% |
| CAAAGGGGAGAGAAACAGAA+TGG | - | tig0030745:41093-41112 | Msa1444560:intron | 45.0% | |
| GTGATGTCAAGTTCCCCATA+CGG | - | tig0030745:41860-41879 | Msa1444560:intron | 45.0% | |
| !! | TACACTTGAGAAAGCACCGT+GGG | + | tig0030745:41905-41924 | None:intergenic | 45.0% |
| !! | TTACACTTGAGAAAGCACCG+TGG | + | tig0030745:41906-41925 | None:intergenic | 45.0% |
| TATTTCCCCTGGCGAATTTG+AGG | - | tig0030745:41950-41969 | Msa1444560:intron | 45.0% | |
| ! | CTCTGGTTCATACTATCACC+AGG | + | tig0030745:42459-42478 | None:intergenic | 45.0% |
| AATTGTTCTGACAGGAGCCA+AGG | - | tig0030745:42547-42566 | Msa1444560:intron | 45.0% | |
| ATCCAGTGCTTACTGAGTTC+AGG | - | tig0030745:42699-42718 | Msa1444560:intron | 45.0% | |
| TTCCTGAACTCAGTAAGCAC+TGG | + | tig0030745:42704-42723 | None:intergenic | 45.0% | |
| AGCCATGTGCATACCATTGT+TGG | + | tig0030745:42730-42749 | None:intergenic | 45.0% | |
| TTTGATTGGACTGAGCTGCA+AGG | + | tig0030745:42963-42982 | None:intergenic | 45.0% | |
| TCTAGCCAAATGCCGAATGT+TGG | + | tig0030745:43042-43061 | None:intergenic | 45.0% | |
| TTTGGCTAGACTGATCTGGT+TGG | - | tig0030745:43052-43071 | Msa1444560:intron | 45.0% | |
| !! | ACTGATCTGGTTGGCCTTAA+AGG | - | tig0030745:43061-43080 | Msa1444560:intron | 45.0% |
| AGAGTGTGTTTGGAGAGAGC+GGG | + | tig0030745:38910-38929 | None:intergenic | 50.0% | |
| TAGGAGCTTATGGCTGACCA+AGG | - | tig0030745:39321-39340 | Msa1444560:intron | 50.0% | |
| GCTTATGGCTGACCAAGGAT+TGG | - | tig0030745:39326-39345 | Msa1444560:intron | 50.0% | |
| ATGGCTGACCAAGGATTGGA+AGG | - | tig0030745:39330-39349 | Msa1444560:intron | 50.0% | |
| TGGCTGACCAAGGATTGGAA+GGG | - | tig0030745:39331-39350 | Msa1444560:intron | 50.0% | |
| ! | CATGGGGCATCACTAATAGC+TGG | + | tig0030745:39680-39699 | None:intergenic | 50.0% |
| GTTGTGGAGTTTGGTCTCCT+TGG | - | tig0030745:40412-40431 | Msa1444560:intron | 50.0% | |
| GGTCGATAGAAAGACTGCCA+AGG | + | tig0030745:40432-40451 | None:intergenic | 50.0% | |
| GATCCGGGAGCCAAAAACAA+CGG | - | tig0030745:40629-40648 | Msa1444560:intron | 50.0% | |
| GGAGTCATTTAACCACTGCG+GGG | - | tig0030745:40819-40838 | Msa1444560:intron | 50.0% | |
| TGAGAAGGTGATGTGATGGC+TGG | - | tig0030745:40850-40869 | Msa1444560:CDS | 50.0% | |
| GAGAAGGTGATGTGATGGCT+GGG | - | tig0030745:40851-40870 | Msa1444560:CDS | 50.0% | |
| AGAAGGTGATGTGATGGCTG+GGG | - | tig0030745:40852-40871 | Msa1444560:CDS | 50.0% | |
| TGCTAGATGGTCAATGAGGG+TGG | - | tig0030745:41013-41032 | Msa1444560:intron | 50.0% | |
| GGGGAGAGAAACAGAATGGA+CGG | - | tig0030745:41097-41116 | Msa1444560:intron | 50.0% | |
| TGCCATTGGTAGGTCTGTAC+TGG | - | tig0030745:41345-41364 | Msa1444560:intron | 50.0% | |
| CTCCAGTACAGACCTACCAA+TGG | + | tig0030745:41350-41369 | None:intergenic | 50.0% | |
| CTGTACTGGAGCTAAGAGTG+AGG | - | tig0030745:41359-41378 | Msa1444560:intron | 50.0% | |
| CAAGTCGAGGTTCAGTAGAC+TGG | - | tig0030745:41467-41486 | Msa1444560:intron | 50.0% | |
| AGCACCACTCATGTAGCGTT+GGG | + | tig0030745:41773-41792 | None:intergenic | 50.0% | |
| AAGCACCACTCATGTAGCGT+TGG | + | tig0030745:41774-41793 | None:intergenic | 50.0% | |
| GAGGGTCTTGCATATTCCCA+CGG | - | tig0030745:41886-41905 | Msa1444560:intron | 50.0% | |
| GCTGTCATGGAAGTCAGGAT+TGG | + | tig0030745:42136-42155 | None:intergenic | 50.0% | |
| GTTTGGCTGTCATGGAAGTC+AGG | + | tig0030745:42141-42160 | None:intergenic | 50.0% | |
| TCTGACAGGAGCCAAGGTAT+TGG | - | tig0030745:42553-42572 | Msa1444560:intron | 50.0% | |
| GGCATTTGGCTAGACTGATC+TGG | - | tig0030745:43048-43067 | Msa1444560:intron | 50.0% | |
| !! | AGCAAGGTTTTCTGGCAGAG+AGG | - | tig0030745:43175-43194 | Msa1444560:intron | 50.0% |
| !! | TTTTCTGGCAGAGAGGAACG+TGG | - | tig0030745:43182-43201 | Msa1444560:intron | 50.0% |
| ! | CAGAGAGGAACGTGGATTGT+AGG | - | tig0030745:43190-43209 | Msa1444560:intron | 50.0% |
| ! | GTTGGCTCCCTTCCAATCCT+TGG | + | tig0030745:39341-39360 | None:intergenic | 55.0% |
| ATTGGAAGGGAGCCAACCTG+TGG | - | tig0030745:39344-39363 | Msa1444560:intron | 55.0% | |
| !! | TCGTATTGGTGTCGGACACG+AGG | - | tig0030745:39613-39632 | Msa1444560:intron | 55.0% |
| !!! | GTGCCGTTGTTTTTGGCTCC+CGG | + | tig0030745:40635-40654 | None:intergenic | 55.0% |
| ! | ATCTCCATTCGGGAAGCACG+TGG | + | tig0030745:40945-40964 | None:intergenic | 55.0% |
| GCGAGCCTCATAGTGCTAGA+TGG | - | tig0030745:41000-41019 | Msa1444560:intron | 55.0% | |
| GATGGTCAATGAGGGTGGTG+TGG | - | tig0030745:41018-41037 | Msa1444560:intron | 55.0% | |
| GTCAATGAGGGTGGTGTGGT+TGG | - | tig0030745:41022-41041 | Msa1444560:intron | 55.0% | |
| ATGAGGGTGGTGTGGTTGGT+AGG | - | tig0030745:41026-41045 | Msa1444560:intron | 55.0% | |
| GGGCTTCCCCGCTAAGTTTA+AGG | - | tig0030745:41678-41697 | Msa1444560:intron | 55.0% | |
| ! | CCACTCATGTAGCGTTGGGT+GGG | + | tig0030745:41769-41788 | None:intergenic | 55.0% |
| ! | ACCACTCATGTAGCGTTGGG+TGG | + | tig0030745:41770-41789 | None:intergenic | 55.0% |
| TGTCAAGTTCCCCATACGGC+TGG | - | tig0030745:41864-41883 | Msa1444560:intron | 55.0% | |
| AAGTTCCCCATACGGCTGGA+GGG | - | tig0030745:41868-41887 | Msa1444560:intron | 55.0% | |
| GACTCTTAACGCTGTCCCCT+TGG | - | tig0030745:42011-42030 | Msa1444560:intron | 55.0% | |
| ! | TGCGGGGTGACTAGCTGAGA+AGG | - | tig0030745:40835-40854 | Msa1444560:intron | 60.0% |
| AGGTGATGTGATGGCTGGGG+TGG | - | tig0030745:40855-40874 | Msa1444560:CDS | 60.0% | |
| GATGTGATGGCTGGGGTGGT+TGG | - | tig0030745:40859-40878 | Msa1444560:CDS | 60.0% | |
| !! | AGGGTGGTGTGGTTGGTAGG+AGG | - | tig0030745:41029-41048 | Msa1444560:intron | 60.0% |
| TAGCGGGGAAGCCCAGTTTC+TGG | + | tig0030745:41672-41691 | None:intergenic | 60.0% | |
| CCCACCCAACGCTACATGAG+TGG | - | tig0030745:41766-41785 | Msa1444560:intron | 60.0% | |
| CAAGTTCCCCATACGGCTGG+AGG | - | tig0030745:41867-41886 | Msa1444560:intron | 60.0% | |
| CAAGACCCTCCAGCCGTATG+GGG | + | tig0030745:41876-41895 | None:intergenic | 60.0% | |
| GCAAGACCCTCCAGCCGTAT+GGG | + | tig0030745:41877-41896 | None:intergenic | 60.0% | |
| TGCAAGACCCTCCAGCCGTA+TGG | + | tig0030745:41878-41897 | None:intergenic | 60.0% | |
| CTCAGCTAGTCACCCCGCAG+TGG | + | tig0030745:40834-40853 | None:intergenic | 65.0% | |
| GCTGCCACGTGCTTCCCGAA+TGG | - | tig0030745:40938-40957 | Msa1444560:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0030745 | gene | 38742 | 43501 | 38742 | ID=Msa1444560;Name=Msa1444560 |
| tig0030745 | mRNA | 38742 | 43501 | 38742 | ID=Msa1444560-mRNA-1;Parent=Msa1444560;Name=Msa1444560-mRNA-1;_AED=0.22;_eAED=0.22;_QI=331|0.88|0.9|1|0.66|0.7|10|344|173 |
| tig0030745 | exon | 38742 | 39086 | 38742 | ID=Msa1444560-mRNA-1:exon:14541;Parent=Msa1444560-mRNA-1 |
| tig0030745 | exon | 39508 | 39581 | 39508 | ID=Msa1444560-mRNA-1:exon:14540;Parent=Msa1444560-mRNA-1 |
| tig0030745 | exon | 39675 | 39776 | 39675 | ID=Msa1444560-mRNA-1:exon:14539;Parent=Msa1444560-mRNA-1 |
| tig0030745 | exon | 40322 | 40414 | 40322 | ID=Msa1444560-mRNA-1:exon:14538;Parent=Msa1444560-mRNA-1 |
| tig0030745 | exon | 40544 | 40588 | 40544 | ID=Msa1444560-mRNA-1:exon:14537;Parent=Msa1444560-mRNA-1 |
| tig0030745 | exon | 40836 | 40886 | 40836 | ID=Msa1444560-mRNA-1:exon:14536;Parent=Msa1444560-mRNA-1 |
| tig0030745 | exon | 41566 | 41637 | 41566 | ID=Msa1444560-mRNA-1:exon:14535;Parent=Msa1444560-mRNA-1 |
| tig0030745 | exon | 42012 | 42018 | 42012 | ID=Msa1444560-mRNA-1:exon:14534;Parent=Msa1444560-mRNA-1 |
| tig0030745 | exon | 42837 | 42948 | 42837 | ID=Msa1444560-mRNA-1:exon:14533;Parent=Msa1444560-mRNA-1 |
| tig0030745 | exon | 43206 | 43501 | 43206 | ID=Msa1444560-mRNA-1:exon:14532;Parent=Msa1444560-mRNA-1 |
| tig0030745 | five_prime_UTR | 43206 | 43501 | 43206 | ID=Msa1444560-mRNA-1:five_prime_utr;Parent=Msa1444560-mRNA-1 |
| tig0030745 | five_prime_UTR | 42914 | 42948 | 42914 | ID=Msa1444560-mRNA-1:five_prime_utr;Parent=Msa1444560-mRNA-1 |
| tig0030745 | CDS | 42837 | 42913 | 42837 | ID=Msa1444560-mRNA-1:cds;Parent=Msa1444560-mRNA-1 |
| tig0030745 | CDS | 42012 | 42018 | 42012 | ID=Msa1444560-mRNA-1:cds;Parent=Msa1444560-mRNA-1 |
| tig0030745 | CDS | 41566 | 41637 | 41566 | ID=Msa1444560-mRNA-1:cds;Parent=Msa1444560-mRNA-1 |
| tig0030745 | CDS | 40836 | 40886 | 40836 | ID=Msa1444560-mRNA-1:cds;Parent=Msa1444560-mRNA-1 |
| tig0030745 | CDS | 40544 | 40588 | 40544 | ID=Msa1444560-mRNA-1:cds;Parent=Msa1444560-mRNA-1 |
| tig0030745 | CDS | 40322 | 40414 | 40322 | ID=Msa1444560-mRNA-1:cds;Parent=Msa1444560-mRNA-1 |
| tig0030745 | CDS | 39675 | 39776 | 39675 | ID=Msa1444560-mRNA-1:cds;Parent=Msa1444560-mRNA-1 |
| tig0030745 | CDS | 39508 | 39581 | 39508 | ID=Msa1444560-mRNA-1:cds;Parent=Msa1444560-mRNA-1 |
| tig0030745 | CDS | 39086 | 39086 | 39086 | ID=Msa1444560-mRNA-1:cds;Parent=Msa1444560-mRNA-1 |
| tig0030745 | three_prime_UTR | 38742 | 39085 | 38742 | ID=Msa1444560-mRNA-1:three_prime_utr;Parent=Msa1444560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
