Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026810 | XP_024627207.1 | 85.276 | 163 | 0 | 1 | 1 | 163 | 1 | 139 | 5.94e-93 | 276 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026810 | sp|Q9C9Y6|TRXH9_ARATH | 71.875 | 128 | 36 | 0 | 36 | 163 | 11 | 138 | 4.93e-68 | 206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026810 | D8L5E3 | 85.276 | 163 | 0 | 1 | 1 | 163 | 1 | 139 | 2.84e-93 | 276 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1026780 | Msa1026810 | 0.956680 | 1.665380e-114 | -8.615850e-47 |
| Msa1026810 | Msa1154180 | 0.909581 | 4.861617e-82 | -8.615850e-47 |
| Msa1026810 | Msa1452110 | 0.955818 | 1.258178e-113 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026810 | MtrunA17_Chr7g0245141 | 85.276 | 163 | 0 | 1 | 1 | 163 | 1 | 139 | 5.46e-97 | 276 |
| Msa1026810 | MtrunA17_Chr8g0334481 | 65.584 | 154 | 31 | 1 | 1 | 154 | 1 | 132 | 2.71e-72 | 213 |
| Msa1026810 | MtrunA17_Chr1g0155721 | 39.091 | 110 | 67 | 0 | 48 | 157 | 6 | 115 | 2.18e-29 | 104 |
| Msa1026810 | MtrunA17_Chr3g0142051 | 44.554 | 101 | 56 | 0 | 48 | 148 | 6 | 106 | 3.47e-29 | 103 |
| Msa1026810 | MtrunA17_Chr5g0404831 | 43.269 | 104 | 59 | 0 | 48 | 151 | 8 | 111 | 4.65e-29 | 103 |
| Msa1026810 | MtrunA17_Chr8g0393201 | 36.066 | 122 | 78 | 0 | 30 | 151 | 209 | 330 | 1.43e-27 | 105 |
| Msa1026810 | MtrunA17_Chr7g0216481 | 41.935 | 93 | 54 | 0 | 59 | 151 | 37 | 129 | 7.20e-25 | 93.2 |
| Msa1026810 | MtrunA17_Chr2g0280411 | 36.036 | 111 | 71 | 0 | 41 | 151 | 2 | 112 | 1.73e-23 | 89.4 |
| Msa1026810 | MtrunA17_Chr2g0319291 | 36.364 | 110 | 70 | 0 | 50 | 159 | 12 | 121 | 3.64e-23 | 88.6 |
| Msa1026810 | MtrunA17_Chr4g0042051 | 35.294 | 102 | 66 | 0 | 50 | 151 | 12 | 113 | 2.83e-21 | 84.0 |
| Msa1026810 | MtrunA17_Chr5g0415771 | 40.659 | 91 | 54 | 0 | 59 | 149 | 30 | 120 | 1.85e-17 | 73.9 |
| Msa1026810 | MtrunA17_Chr5g0415741 | 36.190 | 105 | 67 | 0 | 47 | 151 | 17 | 121 | 1.56e-16 | 71.6 |
| Msa1026810 | MtrunA17_Chr7g0264661 | 29.126 | 103 | 71 | 1 | 49 | 151 | 24 | 124 | 6.57e-16 | 70.1 |
| Msa1026810 | MtrunA17_Chr4g0052481 | 30.928 | 97 | 65 | 1 | 53 | 147 | 64 | 160 | 7.09e-16 | 70.9 |
| Msa1026810 | MtrunA17_Chr5g0415761 | 35.922 | 103 | 66 | 0 | 47 | 149 | 19 | 121 | 1.54e-15 | 68.9 |
| Msa1026810 | MtrunA17_Chr7g0249461 | 39.744 | 78 | 46 | 1 | 71 | 147 | 99 | 176 | 8.35e-12 | 60.5 |
| Msa1026810 | MtrunA17_Chr3g0125821 | 33.803 | 71 | 46 | 1 | 73 | 142 | 89 | 159 | 6.09e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1026810 | AT3G08710.2 | 71.875 | 128 | 36 | 0 | 36 | 163 | 11 | 138 | 5.01e-69 | 206 |
| Msa1026810 | AT3G08710.3 | 71.875 | 128 | 36 | 0 | 36 | 163 | 11 | 138 | 5.01e-69 | 206 |
| Msa1026810 | AT3G08710.1 | 71.875 | 128 | 36 | 0 | 36 | 163 | 11 | 138 | 5.01e-69 | 206 |
| Msa1026810 | AT3G56420.1 | 51.376 | 109 | 53 | 0 | 48 | 156 | 40 | 148 | 1.16e-37 | 127 |
| Msa1026810 | AT3G56420.2 | 51.376 | 109 | 53 | 0 | 48 | 156 | 40 | 148 | 1.16e-37 | 127 |
| Msa1026810 | AT3G56420.3 | 51.376 | 109 | 53 | 0 | 48 | 156 | 40 | 148 | 1.16e-37 | 127 |
| Msa1026810 | AT2G40790.2 | 49.107 | 112 | 57 | 0 | 45 | 156 | 37 | 148 | 1.85e-36 | 124 |
| Msa1026810 | AT2G40790.1 | 49.107 | 112 | 57 | 0 | 45 | 156 | 37 | 148 | 1.85e-36 | 124 |
| Msa1026810 | AT3G51030.1 | 43.269 | 104 | 59 | 0 | 48 | 151 | 6 | 109 | 2.67e-30 | 106 |
| Msa1026810 | AT1G45145.1 | 40.000 | 105 | 63 | 0 | 48 | 152 | 5 | 109 | 2.93e-28 | 101 |
| Msa1026810 | AT1G19730.1 | 41.509 | 106 | 61 | 1 | 48 | 152 | 6 | 111 | 1.54e-26 | 97.4 |
| Msa1026810 | AT1G11530.1 | 38.462 | 104 | 64 | 0 | 48 | 151 | 2 | 105 | 2.21e-24 | 92.0 |
| Msa1026810 | AT5G39950.1 | 37.755 | 98 | 61 | 0 | 54 | 151 | 31 | 128 | 4.68e-24 | 91.7 |
| Msa1026810 | AT5G42980.1 | 38.235 | 102 | 63 | 0 | 46 | 147 | 3 | 104 | 8.08e-24 | 90.5 |
| Msa1026810 | AT3G17880.2 | 34.752 | 141 | 88 | 2 | 21 | 157 | 232 | 372 | 9.16e-24 | 95.9 |
| Msa1026810 | AT3G17880.1 | 34.752 | 141 | 88 | 2 | 21 | 157 | 239 | 379 | 1.18e-23 | 95.5 |
| Msa1026810 | AT1G59730.1 | 37.500 | 104 | 65 | 0 | 48 | 151 | 21 | 124 | 1.99e-23 | 89.7 |
| Msa1026810 | AT1G69880.1 | 35.354 | 99 | 64 | 0 | 53 | 151 | 42 | 140 | 2.89e-18 | 77.0 |
| Msa1026810 | AT3G53220.1 | 30.769 | 104 | 70 | 1 | 48 | 151 | 21 | 122 | 4.01e-16 | 70.9 |
| Msa1026810 | AT5G16400.1 | 33.088 | 136 | 83 | 4 | 17 | 147 | 43 | 175 | 2.11e-14 | 67.8 |
| Msa1026810 | AT2G35010.2 | 30.693 | 101 | 68 | 1 | 50 | 148 | 86 | 186 | 3.28e-13 | 64.7 |
| Msa1026810 | AT2G35010.1 | 30.693 | 101 | 68 | 1 | 50 | 148 | 86 | 186 | 3.28e-13 | 64.7 |
| Msa1026810 | AT3G02730.1 | 38.462 | 78 | 47 | 1 | 71 | 147 | 88 | 165 | 1.72e-11 | 59.7 |
| Msa1026810 | AT1G31020.1 | 29.358 | 109 | 72 | 2 | 45 | 148 | 43 | 151 | 3.96e-11 | 58.5 |
Find 65 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGGCTTTCAAATATTTAAA+TGG | 0.192746 | 7_1:-58999536 | Msa1026810:exon |
| TCTTTGCTTCTTCCAACTTT+TGG | 0.218358 | 7_1:+58998392 | None:intergenic |
| TTTCTGTTCTTAACCACTTT+TGG | 0.240630 | 7_1:-58998633 | Msa1026810:CDS |
| CTTCTCAAGCTCTGGCTTGT+TGG | 0.253102 | 7_1:+58996898 | None:intergenic |
| GGAATTTGTTCTGCTGAAAT+AGG | 0.269571 | 7_1:-58999600 | Msa1026810:five_prime_UTR |
| TTCTGCACTCCCCTTGAATA+TGG | 0.274707 | 7_1:-58996520 | Msa1026810:three_prime_UTR |
| AATTGTGTTTAAACAAGTTT+TGG | 0.293868 | 7_1:+59001082 | None:intergenic |
| CGGCTTTCAAATATTTAAAT+GGG | 0.329455 | 7_1:-58999535 | Msa1026810:exon |
| TCAGACATCTCGCAGTAATA+TGG | 0.336837 | 7_1:+58997276 | None:intergenic |
| ATTCATGTTTGTTGATGCTT+CGG | 0.368552 | 7_1:-58996821 | Msa1026810:three_prime_UTR |
| GGTAATAAGTGCCACATTCC+CGG | 0.372882 | 7_1:+58998432 | None:intergenic |
| ACTTTCTTCTTTCTTAAAGA+TGG | 0.380390 | 7_1:-58996947 | Msa1026810:CDS |
| GTTCATCCACATCAACTAAT+AGG | 0.380538 | 7_1:+58997232 | None:intergenic |
| CAACAACTTGACAAACTTGT+TGG | 0.404290 | 7_1:-58996923 | Msa1026810:CDS |
| AAAGAAAACTTACCGATTTG+AGG | 0.407940 | 7_1:+59000838 | None:intergenic |
| TGCAGGACTTCAGCACTTCA+TGG | 0.415805 | 7_1:-58996988 | Msa1026810:intron |
| TCCTTTCCGTATACCAAAAG+TGG | 0.430289 | 7_1:+58998620 | None:intergenic |
| TATTTAAATGGGGAATTGCT+TGG | 0.430735 | 7_1:-58999524 | Msa1026810:exon |
| ACAAGCTTCTTCTCAAGCTC+TGG | 0.435251 | 7_1:+58996890 | None:intergenic |
| CTTTCTGTTTCACCTCAAAT+CGG | 0.437943 | 7_1:-59000850 | Msa1026810:intron |
| ATTTCAGCGCTGTGTGGTGC+GGG | 0.443661 | 7_1:-58997317 | Msa1026810:CDS |
| CAATAGACTTATGATTTAAG+TGG | 0.466278 | 7_1:-58996574 | Msa1026810:three_prime_UTR |
| TTGGTCCCAAGCTTCTTTGG+TGG | 0.470738 | 7_1:+58998411 | None:intergenic |
| AATGGGGAATTGCTTGGCTA+AGG | 0.472308 | 7_1:-58999518 | Msa1026810:intron |
| AAATGTAACCACCATATTCA+AGG | 0.472327 | 7_1:+58996509 | None:intergenic |
| AATGCTTGTAGTCTCGGGAT+AGG | 0.474668 | 7_1:-58998489 | Msa1026810:intron |
| TGTGTGGTGCGGGCCTTGCA+AGG | 0.481266 | 7_1:-58997307 | Msa1026810:CDS |
| TCTTTAAGAAAGAAGAAAGT+TGG | 0.487293 | 7_1:+58996950 | None:intergenic |
| TATTACCACCAAAGAAGCTT+GGG | 0.487323 | 7_1:-58998416 | Msa1026810:CDS |
| CATTAAAGTTTACAAGTTAG+CGG | 0.487533 | 7_1:-58999555 | Msa1026810:five_prime_UTR |
| GAGAAGATAAAGTAGTATTG+TGG | 0.497839 | 7_1:+59000938 | None:intergenic |
| AATACAGTGGACCTCGTGCT+TGG | 0.502036 | 7_1:+59000911 | None:intergenic |
| AAAACAAGGAATAATAGAAA+AGG | 0.508546 | 7_1:-58998598 | Msa1026810:intron |
| ATGCTTGTAGTCTCGGGATA+GGG | 0.508948 | 7_1:-58998488 | Msa1026810:intron |
| AGAAGCTTGGGACCAAAAGT+TGG | 0.512115 | 7_1:-58998404 | Msa1026810:CDS |
| GCAGGACTTCAGCACTTCAT+GGG | 0.516790 | 7_1:-58996987 | Msa1026810:intron |
| AAAGTTGGAAGAAGCAAAGA+AGG | 0.520011 | 7_1:-58998389 | Msa1026810:CDS |
| AATTTCAGCGCTGTGTGGTG+CGG | 0.527326 | 7_1:-58997318 | Msa1026810:CDS |
| CAAGAATTCGCGACTTGTGA+GGG | 0.529543 | 7_1:+58996790 | None:intergenic |
| TTATTACCACCAAAGAAGCT+TGG | 0.535851 | 7_1:-58998417 | Msa1026810:CDS |
| TGCACTCCCCTTGAATATGG+TGG | 0.537234 | 7_1:-58996517 | Msa1026810:three_prime_UTR |
| CAACATGTGGAGTTTGCTGC+CGG | 0.540698 | 7_1:-58998451 | Msa1026810:CDS |
| AATGTAACCACCATATTCAA+GGG | 0.540798 | 7_1:+58996510 | None:intergenic |
| TATGGTGCAATCACCTTGCA+AGG | 0.556546 | 7_1:+58997294 | None:intergenic |
| AACATGTGGAGTTTGCTGCC+GGG | 0.559586 | 7_1:-58998450 | Msa1026810:CDS |
| GATGTTCCTATTAGTTGATG+TGG | 0.576876 | 7_1:-58997238 | Msa1026810:CDS |
| AAGAAAGAAGAAAGTTGGTG+TGG | 0.580578 | 7_1:+58996955 | None:intergenic |
| GGCTTTCAAATATTTAAATG+GGG | 0.589008 | 7_1:-58999534 | Msa1026810:exon |
| GGAGTTTGCTGCCGGGAATG+TGG | 0.597443 | 7_1:-58998443 | Msa1026810:CDS |
| TAACAATAATAATTGTGTTG+TGG | 0.604307 | 7_1:+59000971 | None:intergenic |
| GTTTAGAAGCACTCATGTCA+TGG | 0.605192 | 7_1:+58996766 | None:intergenic |
| TGAAATAGGCGGTCTTTCGT+CGG | 0.607226 | 7_1:-58999586 | Msa1026810:five_prime_UTR |
| TCAAGAATTCGCGACTTGTG+AGG | 0.608567 | 7_1:+58996789 | None:intergenic |
| TTGGAAGAAGCAAAGAAGGA+TGG | 0.617820 | 7_1:-58998385 | Msa1026810:CDS |
| ATTGTGAAAGTAGAGACAGA+AGG | 0.622029 | 7_1:+59000883 | None:intergenic |
| AAATAATTCAAAGACACTCA+CGG | 0.623663 | 7_1:+58996737 | None:intergenic |
| CTGAGGAACTGAATCAGCAA+TGG | 0.626817 | 7_1:+58996865 | None:intergenic |
| ACAAGTCACTGCTTATTCTG+AGG | 0.628145 | 7_1:+58996848 | None:intergenic |
| TCTTCTCTTCTCCAAGCACG+AGG | 0.632107 | 7_1:-59000922 | Msa1026810:five_prime_UTR |
| ATTTGTTCTGCTGAAATAGG+CGG | 0.639737 | 7_1:-58999597 | Msa1026810:five_prime_UTR |
| GGTATACGGAAAGGAAAACA+AGG | 0.648844 | 7_1:-58998612 | Msa1026810:CDS |
| CAATGATTCTGATCAACATG+TGG | 0.654075 | 7_1:-58998464 | Msa1026810:CDS |
| ATGTAACCACCATATTCAAG+GGG | 0.655718 | 7_1:+58996511 | None:intergenic |
| ACAGAAGGATACAAATACAG+TGG | 0.686734 | 7_1:+59000898 | None:intergenic |
| TTGCAAATTTCAGCGCTGTG+TGG | 0.691109 | 7_1:-58997323 | Msa1026810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTATTTATTTTTTGATG+GGG | - | chr7_1:58996875-58996894 | Msa1026810:CDS | 10.0% |
| !!! | CTTTTCAATTAAATAATTTA+TGG | + | chr7_1:58999666-58999685 | None:intergenic | 10.0% |
| !!! | TATACATTTTAATCAAATAT+GGG | + | chr7_1:59000138-59000157 | None:intergenic | 10.0% |
| !!! | TTATACATTTTAATCAAATA+TGG | + | chr7_1:59000139-59000158 | None:intergenic | 10.0% |
| !!! | TGTTTTTTTTACTGAAAAAT+AGG | + | chr7_1:58996585-58996604 | None:intergenic | 15.0% |
| !! | AAAGTAAATAAATTCCAAAT+GGG | + | chr7_1:58997071-58997090 | None:intergenic | 15.0% |
| !!! | CTTTATTTTATCTTTTGTTA+AGG | - | chr7_1:58999960-58999979 | Msa1026810:intron | 15.0% |
| !!! | GCTATATAATTTATTTTCTT+TGG | - | chr7_1:59000216-59000235 | Msa1026810:intron | 15.0% |
| !! | ATTATCATATATCAAATCTT+TGG | - | chr7_1:59000521-59000540 | Msa1026810:intron | 15.0% |
| !!! | TTTGAATTATTTTTTTTCCT+TGG | - | chr7_1:59000875-59000894 | Msa1026810:five_prime_UTR | 15.0% |
| !!! | AATTGTGTTTAAACAAGTTT+TGG | + | chr7_1:58996522-58996541 | None:intergenic | 20.0% |
| !! | TAACAATAATAATTGTGTTG+TGG | + | chr7_1:58996633-58996652 | None:intergenic | 20.0% |
| !! | GAAAATCAAATTGAAAACTA+AGG | + | chr7_1:58996836-58996855 | None:intergenic | 20.0% |
| !! | AAGTAAATAAATTCCAAATG+GGG | + | chr7_1:58997070-58997089 | None:intergenic | 20.0% |
| !! | CAAAGTAAATAAATTCCAAA+TGG | + | chr7_1:58997072-58997091 | None:intergenic | 20.0% |
| !! | AGGAAATAATTTCTGATATA+TGG | - | chr7_1:58997805-58997824 | Msa1026810:intron | 20.0% |
| !! | ATATAATATCTCTATTGTTC+TGG | - | chr7_1:58997968-58997987 | Msa1026810:intron | 20.0% |
| !! | TCATTAAAAGTTAAAGTTTG+AGG | - | chr7_1:58998150-58998169 | Msa1026810:intron | 20.0% |
| !! | TGTAAAAGTTAATCTCTATT+TGG | + | chr7_1:58998368-58998387 | None:intergenic | 20.0% |
| !! | AAAACAAGGAATAATAGAAA+AGG | - | chr7_1:58999003-58999022 | Msa1026810:intron | 20.0% |
| !! | CTCAGTAAAGATTTATATTA+AGG | - | chr7_1:58999639-58999658 | Msa1026810:intron | 20.0% |
| !! | TAAAAAGTAAGATAGAGTTA+AGG | + | chr7_1:59000195-59000214 | None:intergenic | 20.0% |
| !!! | ATGTTTTATATTTACATCCA+AGG | + | chr7_1:59000895-59000914 | None:intergenic | 20.0% |
| ! | TGATCACAAATCCAAATATT+GGG | - | chr7_1:58997031-58997050 | Msa1026810:intron | 25.0% |
| ! | CATTAAAAACTCCCAATATT+TGG | + | chr7_1:58997045-58997064 | None:intergenic | 25.0% |
| !! | TTTTTCGTTTTCCTTTTTTC+CGG | + | chr7_1:58997419-58997438 | None:intergenic | 25.0% |
| ! | AAATAAAAATCATTCCGAAC+CGG | + | chr7_1:58997617-58997636 | None:intergenic | 25.0% |
| !!! | TTGTTTTTTGAGTCTTTAAC+TGG | - | chr7_1:58997698-58997717 | Msa1026810:intron | 25.0% |
| ! | CATTAAAGTTTACAAGTTAG+CGG | - | chr7_1:58998046-58998065 | Msa1026810:intron | 25.0% |
| ! | CGGCTTTCAAATATTTAAAT+GGG | - | chr7_1:58998066-58998085 | Msa1026810:intron | 25.0% |
| ! | GGCTTTCAAATATTTAAATG+GGG | - | chr7_1:58998067-58998086 | Msa1026810:intron | 25.0% |
| ! | GTGGCAAAAACTTATTTATT+TGG | - | chr7_1:58998339-58998358 | Msa1026810:intron | 25.0% |
| !! | TAGAAACGACAGATTATTTT+AGG | - | chr7_1:58998517-58998536 | Msa1026810:intron | 25.0% |
| !!! | AGAAACGACAGATTATTTTA+GGG | - | chr7_1:58998518-58998537 | Msa1026810:intron | 25.0% |
| ! | TATCACCATTAAAAGATGAA+GGG | + | chr7_1:58998769-58998788 | None:intergenic | 25.0% |
| ! | TTATCACCATTAAAAGATGA+AGG | + | chr7_1:58998770-58998789 | None:intergenic | 25.0% |
| !! | CATCTTTTAATGGTGATAAA+CGG | - | chr7_1:58998771-58998790 | Msa1026810:intron | 25.0% |
| !! | TTACTTCTAGTTACAGATTA+GGG | + | chr7_1:58998920-58998939 | None:intergenic | 25.0% |
| !! | ATTACTTCTAGTTACAGATT+AGG | + | chr7_1:58998921-58998940 | None:intergenic | 25.0% |
| ! | TGAACTGCATATTAAAAAGT+AGG | + | chr7_1:58999265-58999284 | None:intergenic | 25.0% |
| ! | ATGCAGTTCAATAAAATTGA+AGG | - | chr7_1:58999275-58999294 | Msa1026810:intron | 25.0% |
| ! | ACATTTGTATACTTGGTATT+CGG | - | chr7_1:58999359-58999378 | Msa1026810:intron | 25.0% |
| ! | AAAAATTCCTAACGAGATTA+TGG | + | chr7_1:58999408-58999427 | None:intergenic | 25.0% |
| !!! | TAATCTCGTTAGGAATTTTT+TGG | - | chr7_1:58999408-58999427 | Msa1026810:intron | 25.0% |
| !! | TTAGCTTATCTAGATTTTAC+TGG | - | chr7_1:58999805-58999824 | Msa1026810:intron | 25.0% |
| ! | ATATTGTTTGGTATAGCTTA+TGG | - | chr7_1:58999842-58999861 | Msa1026810:intron | 25.0% |
| ! | AATAAGCTGGAAAAAACTTA+TGG | + | chr7_1:58999886-58999905 | None:intergenic | 25.0% |
| !! | ATCTTTGGCTTATATACTTT+AGG | - | chr7_1:59000536-59000555 | Msa1026810:intron | 25.0% |
| !! | TCTTTAAGAAAGAAGAAAGT+TGG | + | chr7_1:59000654-59000673 | None:intergenic | 25.0% |
| ! | ACTTTCTTCTTTCTTAAAGA+TGG | - | chr7_1:59000654-59000673 | Msa1026810:intron | 25.0% |
| ! | AAATAATTCAAAGACACTCA+CGG | + | chr7_1:59000867-59000886 | None:intergenic | 25.0% |
| ! | CATTATTGTCTAAGAAAAAG+TGG | - | chr7_1:59000990-59001009 | Msa1026810:five_prime_UTR | 25.0% |
| ! | CAATAGACTTATGATTTAAG+TGG | - | chr7_1:59001027-59001046 | Msa1026810:five_prime_UTR | 25.0% |
| GAGAAGATAAAGTAGTATTG+TGG | + | chr7_1:58996666-58996685 | None:intergenic | 30.0% | |
| !! | AAAGAAAACTTACCGATTTG+AGG | + | chr7_1:58996766-58996785 | None:intergenic | 30.0% |
| AATTGAAAACTAAGGTGTGA+GGG | + | chr7_1:58996828-58996847 | None:intergenic | 30.0% | |
| AAATTGAAAACTAAGGTGTG+AGG | + | chr7_1:58996829-58996848 | None:intergenic | 30.0% | |
| TGAGAAACAAGAAAGGAAAA+AGG | + | chr7_1:58997002-58997021 | None:intergenic | 30.0% | |
| CTGATCACAAATCCAAATAT+TGG | - | chr7_1:58997030-58997049 | Msa1026810:intron | 30.0% | |
| ! | AGTTTTTAATGTACCCCATT+TGG | - | chr7_1:58997054-58997073 | Msa1026810:intron | 30.0% |
| AGTACTTGTGTTATGTCTTA+AGG | - | chr7_1:58997107-58997126 | Msa1026810:intron | 30.0% | |
| AGGGTTAAAGATTGTTTCAA+CGG | - | chr7_1:58997228-58997247 | Msa1026810:CDS | 30.0% | |
| ! | TTATTTCTCAAACTTGCACA+CGG | + | chr7_1:58997271-58997290 | None:intergenic | 30.0% |
| !! | TGTACAGATAGTTGTTGTTT+AGG | - | chr7_1:58997322-58997341 | Msa1026810:CDS | 30.0% |
| !! | GTACAGATAGTTGTTGTTTA+GGG | - | chr7_1:58997323-58997342 | Msa1026810:CDS | 30.0% |
| ! | TTTTCGTTTTCCTTTTTTCC+GGG | + | chr7_1:58997418-58997437 | None:intergenic | 30.0% |
| AATGACAAAAGAATCAACTG+CGG | - | chr7_1:58997437-58997456 | Msa1026810:intron | 30.0% | |
| TGGATAAACTTCTCAAGAAA+CGG | + | chr7_1:58997592-58997611 | None:intergenic | 30.0% | |
| TTCCTTACATACATTTCTGA+AGG | + | chr7_1:58997790-58997809 | None:intergenic | 30.0% | |
| ATGGCTAAGTGAACATTTAT+TGG | - | chr7_1:58997824-58997843 | Msa1026810:intron | 30.0% | |
| TAATATCTCTATTGTTCTGG+TGG | - | chr7_1:58997971-58997990 | Msa1026810:intron | 30.0% | |
| GCGGCTTTCAAATATTTAAA+TGG | - | chr7_1:58998065-58998084 | Msa1026810:intron | 30.0% | |
| TATTTAAATGGGGAATTGCT+TGG | - | chr7_1:58998077-58998096 | Msa1026810:intron | 30.0% | |
| TTGGCTAAGGTAAGAATATT+TGG | - | chr7_1:58998096-58998115 | Msa1026810:intron | 30.0% | |
| TTTATCAGAGTACAGGATAA+AGG | + | chr7_1:58998176-58998195 | None:intergenic | 30.0% | |
| TGTACAATTTATCAGAGTAC+AGG | + | chr7_1:58998183-58998202 | None:intergenic | 30.0% | |
| TAAGATCACTCTATAAGCAA+AGG | - | chr7_1:58998205-58998224 | Msa1026810:intron | 30.0% | |
| ! | AAGTTTTTGCCACAAAAAGA+CGG | + | chr7_1:58998332-58998351 | None:intergenic | 30.0% |
| ! | CTGTTTAATTTATCTGCTAC+TGG | + | chr7_1:58998427-58998446 | None:intergenic | 30.0% |
| GAAACTAATGAAAGCTATGT+AGG | - | chr7_1:58998491-58998510 | Msa1026810:intron | 30.0% | |
| ATCACCATTAAAAGATGAAG+GGG | + | chr7_1:58998768-58998787 | None:intergenic | 30.0% | |
| ATCAGTTATGAGAAGGAATA+TGG | + | chr7_1:58998844-58998863 | None:intergenic | 30.0% | |
| ! | CTGAATTAATACGTTTTCAC+AGG | + | chr7_1:58998883-58998902 | None:intergenic | 30.0% |
| AACAGAAAAATCACAGATAG+AGG | + | chr7_1:58998956-58998975 | None:intergenic | 30.0% | |
| ! | TTTCTGTTCTTAACCACTTT+TGG | - | chr7_1:58998968-58998987 | Msa1026810:intron | 30.0% |
| !! | TCTTAACCACTTTTGGTATA+CGG | - | chr7_1:58998975-58998994 | Msa1026810:intron | 30.0% |
| ! | GAATAATAGAAAAGGTGTGT+AGG | - | chr7_1:58999011-58999030 | Msa1026810:intron | 30.0% |
| ! | GTTTTTAATGCTTGTAGTCT+CGG | - | chr7_1:58999106-58999125 | Msa1026810:intron | 30.0% |
| ! | TTTTTAATGCTTGTAGTCTC+GGG | - | chr7_1:58999107-58999126 | Msa1026810:intron | 30.0% |
| ATACCAAGTATACAAATGTG+CGG | + | chr7_1:58999358-58999377 | None:intergenic | 30.0% | |
| ! | ATCTAGATTTTACTGGCATA+AGG | - | chr7_1:58999812-58999831 | Msa1026810:intron | 30.0% |
| TAAGGACATGCAATATTGTT+TGG | - | chr7_1:58999830-58999849 | Msa1026810:intron | 30.0% | |
| GTAAACTGTTTATCCAAACA+AGG | - | chr7_1:59000038-59000057 | Msa1026810:intron | 30.0% | |
| ACTAGCAATTACTGCTAATA+TGG | + | chr7_1:59000064-59000083 | None:intergenic | 30.0% | |
| GAGTTAAGGAAAATATATGC+TGG | + | chr7_1:59000181-59000200 | None:intergenic | 30.0% | |
| TTGCCACATGACATATTTAA+GGG | + | chr7_1:59000564-59000583 | None:intergenic | 30.0% | |
| ! | ATTCATGTTTGTTGATGCTT+CGG | - | chr7_1:59000780-59000799 | Msa1026810:intron | 30.0% |
| TATTGTCTAAGAAAAAGTGG+TGG | - | chr7_1:59000993-59001012 | Msa1026810:five_prime_UTR | 30.0% | |
| ACAGAAGGATACAAATACAG+TGG | + | chr7_1:58996706-58996725 | None:intergenic | 35.0% | |
| ATTGTGAAAGTAGAGACAGA+AGG | + | chr7_1:58996721-58996740 | None:intergenic | 35.0% | |
| CTTTCTGTTTCACCTCAAAT+CGG | - | chr7_1:58996751-58996770 | Msa1026810:three_prime_UTR | 35.0% | |
| TACTGGTGCTTGAATAAAAG+AGG | + | chr7_1:58996797-58996816 | None:intergenic | 35.0% | |
| GATGGGGTTGTTTATATTGA+TGG | - | chr7_1:58996891-58996910 | Msa1026810:CDS | 35.0% | |
| AAACTGCTGAGAAACAAGAA+AGG | + | chr7_1:58997009-58997028 | None:intergenic | 35.0% | |
| !!! | TTTTGTTGGTCTTAACCATC+TGG | - | chr7_1:58997151-58997170 | Msa1026810:intron | 35.0% |
| TCTTAACCATCTGGTTACTA+AGG | - | chr7_1:58997160-58997179 | Msa1026810:intron | 35.0% | |
| CTTAACCATCTGGTTACTAA+GGG | - | chr7_1:58997161-58997180 | Msa1026810:intron | 35.0% | |
| TGTCGAGAGGTAATAAAGTA+GGG | - | chr7_1:58997209-58997228 | Msa1026810:intron | 35.0% | |
| ATGACAAAAGAATCAACTGC+GGG | - | chr7_1:58997438-58997457 | Msa1026810:intron | 35.0% | |
| TCATATCAGGCATTTACTGT+TGG | + | chr7_1:58997486-58997505 | None:intergenic | 35.0% | |
| AGTAAATGCCTGATATGAGT+CGG | - | chr7_1:58997488-58997507 | Msa1026810:intron | 35.0% | |
| CTTGAGAAGTTTATCCAATC+CGG | - | chr7_1:58997595-58997614 | Msa1026810:intron | 35.0% | |
| CACCTTCAGAAATGTATGTA+AGG | - | chr7_1:58997785-58997804 | Msa1026810:intron | 35.0% | |
| TATTGTTCTGGTGGAATTCA+GGG | - | chr7_1:58997980-58997999 | Msa1026810:intron | 35.0% | |
| ! | GGAATTTGTTCTGCTGAAAT+AGG | - | chr7_1:58998001-58998020 | Msa1026810:intron | 35.0% |
| ATTTGTTCTGCTGAAATAGG+CGG | - | chr7_1:58998004-58998023 | Msa1026810:intron | 35.0% | |
| ! | GTCAAACATGCTATTTACTG+TGG | - | chr7_1:58998123-58998142 | Msa1026810:intron | 35.0% |
| !! | TTATGCGTTGATTCTACCAA+AGG | + | chr7_1:58998264-58998283 | None:intergenic | 35.0% |
| TTTGGTAGAATCAACGCATA+AGG | - | chr7_1:58998263-58998282 | Msa1026810:intron | 35.0% | |
| CTCAGATGAATTAGAACAAC+TGG | + | chr7_1:58998547-58998566 | None:intergenic | 35.0% | |
| GTTATGAGAAGGAATATGGA+TGG | + | chr7_1:58998840-58998859 | None:intergenic | 35.0% | |
| CTGCAATATCAGTTATGAGA+AGG | + | chr7_1:58998851-58998870 | None:intergenic | 35.0% | |
| CAATGATTCTGATCAACATG+TGG | - | chr7_1:58999137-58999156 | Msa1026810:intron | 35.0% | |
| TTATTACCACCAAAGAAGCT+TGG | - | chr7_1:58999184-58999203 | Msa1026810:intron | 35.0% | |
| TATTACCACCAAAGAAGCTT+GGG | - | chr7_1:58999185-58999204 | Msa1026810:intron | 35.0% | |
| ! | TCTTTGCTTCTTCCAACTTT+TGG | + | chr7_1:58999212-58999231 | None:intergenic | 35.0% |
| AAAGTTGGAAGAAGCAAAGA+AGG | - | chr7_1:58999212-58999231 | Msa1026810:intron | 35.0% | |
| AGCAAAACAACACAGCAAAA+TGG | + | chr7_1:58999308-58999327 | None:intergenic | 35.0% | |
| TTACCGCACATTTGTATACT+TGG | - | chr7_1:58999352-58999371 | Msa1026810:intron | 35.0% | |
| AATTCCTAACGAGATTATGG+CGG | + | chr7_1:58999405-58999424 | None:intergenic | 35.0% | |
| !!! | TCTCGTTAGGAATTTTTTGG+CGG | - | chr7_1:58999411-58999430 | Msa1026810:intron | 35.0% |
| CCAAAAAAAAACAGAGACAC+TGG | + | chr7_1:58999721-58999740 | None:intergenic | 35.0% | |
| !!! | CCAGTGTCTCTGTTTTTTTT+TGG | - | chr7_1:58999718-58999737 | Msa1026810:intron | 35.0% |
| ! | GATGTTCCTATTAGTTGATG+TGG | - | chr7_1:59000363-59000382 | Msa1026810:intron | 35.0% |
| GTTCATCCACATCAACTAAT+AGG | + | chr7_1:59000372-59000391 | None:intergenic | 35.0% | |
| TGTTTGTCCCCCATATTTAA+GGG | + | chr7_1:59000484-59000503 | None:intergenic | 35.0% | |
| ATGTTTGTCCCCCATATTTA+AGG | + | chr7_1:59000485-59000504 | None:intergenic | 35.0% | |
| TGCCACATGACATATTTAAG+GGG | + | chr7_1:59000563-59000582 | None:intergenic | 35.0% | |
| GTTGCCACATGACATATTTA+AGG | + | chr7_1:59000565-59000584 | None:intergenic | 35.0% | |
| GCAACACATTTGATTGAACA+TGG | - | chr7_1:59000580-59000599 | Msa1026810:intron | 35.0% | |
| !! | AAGAAAGAAGAAAGTTGGTG+TGG | + | chr7_1:59000649-59000668 | None:intergenic | 35.0% |
| CAACAACTTGACAAACTTGT+TGG | - | chr7_1:59000678-59000697 | Msa1026810:intron | 35.0% | |
| AAGAAAAAGTGGTGGTTACA+TGG | - | chr7_1:59001001-59001020 | Msa1026810:five_prime_UTR | 35.0% | |
| TCTTTCCCTTAGTAACCAGA+TGG | + | chr7_1:58997169-58997188 | None:intergenic | 40.0% | |
| ATCTGGTTACTAAGGGAAAG+AGG | - | chr7_1:58997168-58997187 | Msa1026810:intron | 40.0% | |
| GTGTCGAGAGGTAATAAAGT+AGG | - | chr7_1:58997208-58997227 | Msa1026810:intron | 40.0% | |
| TGTTTCAACGGTTCCTTTGT+CGG | - | chr7_1:58997240-58997259 | Msa1026810:CDS | 40.0% | |
| CTTTATTCGTAACCTAAGCC+CGG | - | chr7_1:58997397-58997416 | Msa1026810:intron | 40.0% | |
| ! | TTTTCCTTTTTTCCGGGCTT+AGG | + | chr7_1:58997412-58997431 | None:intergenic | 40.0% |
| TGACAAAAGAATCAACTGCG+GGG | - | chr7_1:58997439-58997458 | Msa1026810:intron | 40.0% | |
| TATCAGGCATTTACTGTTGG+CGG | + | chr7_1:58997483-58997502 | None:intergenic | 40.0% | |
| GCATATGTGTTAGCCAATCT+CGG | + | chr7_1:58997553-58997572 | None:intergenic | 40.0% | |
| GAAGTTTATCCAATCCGGTT+CGG | - | chr7_1:58997600-58997619 | Msa1026810:intron | 40.0% | |
| AAAATCATTCCGAACCGGAT+TGG | + | chr7_1:58997612-58997631 | None:intergenic | 40.0% | |
| ! | TGAAGGTGCAAAATCAAGCA+GGG | + | chr7_1:58997773-58997792 | None:intergenic | 40.0% |
| CATCATGAGCATAGAAGAAC+AGG | + | chr7_1:58997886-58997905 | None:intergenic | 40.0% | |
| CTATTGTTCTGGTGGAATTC+AGG | - | chr7_1:58997979-58997998 | Msa1026810:intron | 40.0% | |
| TTTCCAAGTGTGTAGTGTGT+TGG | - | chr7_1:58998237-58998256 | Msa1026810:intron | 40.0% | |
| GCATACAACACAATACGCAA+AGG | + | chr7_1:58998402-58998421 | None:intergenic | 40.0% | |
| CAGTTCAAATTACACTGCCT+AGG | - | chr7_1:58998584-58998603 | Msa1026810:intron | 40.0% | |
| ! | ACTCTTTTCACGAGTTACCT+AGG | + | chr7_1:58998604-58998623 | None:intergenic | 40.0% |
| ATTAAAAGATGAAGGGGAGG+AGG | + | chr7_1:58998762-58998781 | None:intergenic | 40.0% | |
| ! | TCCTCCCCTTCATCTTTTAA+TGG | - | chr7_1:58998761-58998780 | Msa1026810:intron | 40.0% |
| ACCATTAAAAGATGAAGGGG+AGG | + | chr7_1:58998765-58998784 | None:intergenic | 40.0% | |
| !! | ACCACTTTTGGTATACGGAA+AGG | - | chr7_1:58998980-58998999 | Msa1026810:intron | 40.0% |
| TCCTTTCCGTATACCAAAAG+TGG | + | chr7_1:58998984-58999003 | None:intergenic | 40.0% | |
| GGTATACGGAAAGGAAAACA+AGG | - | chr7_1:58998989-58999008 | Msa1026810:intron | 40.0% | |
| TTGGAAGAAGCAAAGAAGGA+TGG | - | chr7_1:58999216-58999235 | Msa1026810:intron | 40.0% | |
| ATGTGCGGTAAATTCTAGCA+AGG | + | chr7_1:58999343-58999362 | None:intergenic | 40.0% | |
| AAAACCGCCATAATCTCGTT+AGG | - | chr7_1:58999398-58999417 | Msa1026810:intron | 40.0% | |
| CACATGACTTTGAGTCAGTT+TGG | - | chr7_1:58999467-58999486 | Msa1026810:intron | 40.0% | |
| AAGTTCTTTCGAGCTAGAAG+TGG | - | chr7_1:58999683-58999702 | Msa1026810:intron | 40.0% | |
| GCTAGAAGTGGATCTGAATT+AGG | - | chr7_1:58999695-58999714 | Msa1026810:intron | 40.0% | |
| ! | TTTTTCTTTGCCCGATCTAG+TGG | - | chr7_1:58999746-58999765 | Msa1026810:intron | 40.0% |
| TATCTACACCACCACTAGAT+CGG | + | chr7_1:58999760-58999779 | None:intergenic | 40.0% | |
| ! | TCTAGTGGTGGTGTAGATAT+AGG | - | chr7_1:58999761-58999780 | Msa1026810:intron | 40.0% |
| ! | CTAGTGGTGGTGTAGATATA+GGG | - | chr7_1:58999762-58999781 | Msa1026810:intron | 40.0% |
| GAGAGCTTATGGAAATAAGC+TGG | + | chr7_1:58999899-58999918 | None:intergenic | 40.0% | |
| CTTATTTCCATAAGCTCTCC+AGG | - | chr7_1:58999900-58999919 | Msa1026810:intron | 40.0% | |
| !! | ACTGCTAATATGGCCTTGTT+TGG | + | chr7_1:59000054-59000073 | None:intergenic | 40.0% |
| ACTAAAGCTCCTTGTTCAAC+AGG | - | chr7_1:59000252-59000271 | Msa1026810:intron | 40.0% | |
| TTGCAATCACCTGTTGAACA+AGG | + | chr7_1:59000264-59000283 | None:intergenic | 40.0% | |
| TCAGACATCTCGCAGTAATA+TGG | + | chr7_1:59000328-59000347 | None:intergenic | 40.0% | |
| ACTAGCACTCCCCTTAAATA+TGG | - | chr7_1:59000471-59000490 | Msa1026810:intron | 40.0% | |
| CTAGCACTCCCCTTAAATAT+GGG | - | chr7_1:59000472-59000491 | Msa1026810:intron | 40.0% | |
| TAGCACTCCCCTTAAATATG+GGG | - | chr7_1:59000473-59000492 | Msa1026810:intron | 40.0% | |
| GTTTGTCCCCCATATTTAAG+GGG | + | chr7_1:59000483-59000502 | None:intergenic | 40.0% | |
| GTCCCCTTAAATATGTCATG+TGG | - | chr7_1:59000558-59000577 | Msa1026810:intron | 40.0% | |
| AACATGGTTGTGTATGTTGC+AGG | - | chr7_1:59000596-59000615 | Msa1026810:intron | 40.0% | |
| ACAAGTCACTGCTTATTCTG+AGG | + | chr7_1:59000756-59000775 | None:intergenic | 40.0% | |
| !! | GTTTAGAAGCACTCATGTCA+TGG | + | chr7_1:59000838-59000857 | None:intergenic | 40.0% |
| ! | GGGAAAGAGGTCTTGTAATC+TGG | - | chr7_1:58997181-58997200 | Msa1026810:intron | 45.0% |
| ! | TAATCTGGAGTTGTGTCGAG+AGG | - | chr7_1:58997196-58997215 | Msa1026810:intron | 45.0% |
| GTTTCAACGGTTCCTTTGTC+GGG | - | chr7_1:58997241-58997260 | Msa1026810:CDS | 45.0% | |
| TTTCAACGGTTCCTTTGTCG+GGG | - | chr7_1:58997242-58997261 | Msa1026810:CDS | 45.0% | |
| GTAACCTAAGCCCGGAAAAA+AGG | - | chr7_1:58997405-58997424 | Msa1026810:intron | 45.0% | |
| ! | TTACTGTTGGCGGACGTTAT+GGG | + | chr7_1:58997473-58997492 | None:intergenic | 45.0% |
| ! | TTTACTGTTGGCGGACGTTA+TGG | + | chr7_1:58997474-58997493 | None:intergenic | 45.0% |
| ! | AGTCTTGTCCGACTCATATC+AGG | + | chr7_1:58997499-58997518 | None:intergenic | 45.0% |
| CACCCCTCTTCTATGATTGA+CGG | - | chr7_1:58997662-58997681 | Msa1026810:intron | 45.0% | |
| ACCCCTCTTCTATGATTGAC+GGG | - | chr7_1:58997663-58997682 | Msa1026810:intron | 45.0% | |
| TCCCCGTCAATCATAGAAGA+GGG | + | chr7_1:58997668-58997687 | None:intergenic | 45.0% | |
| TTCCCCGTCAATCATAGAAG+AGG | + | chr7_1:58997669-58997688 | None:intergenic | 45.0% | |
| CTTCTATGATTGACGGGGAA+TGG | - | chr7_1:58997669-58997688 | Msa1026810:intron | 45.0% | |
| TATGATTGACGGGGAATGGA+GGG | - | chr7_1:58997673-58997692 | Msa1026810:intron | 45.0% | |
| ! | GAAGGTGCAAAATCAAGCAG+GGG | + | chr7_1:58997772-58997791 | None:intergenic | 45.0% |
| ! | CTGAAGGTGCAAAATCAAGC+AGG | + | chr7_1:58997774-58997793 | None:intergenic | 45.0% |
| TGAAATAGGCGGTCTTTCGT+CGG | - | chr7_1:58998015-58998034 | Msa1026810:intron | 45.0% | |
| AATGGGGAATTGCTTGGCTA+AGG | - | chr7_1:58998083-58998102 | Msa1026810:intron | 45.0% | |
| ! | TGTGTAGTGTGTTGGTCCTT+TGG | - | chr7_1:58998245-58998264 | Msa1026810:intron | 45.0% |
| AATGCTTGTAGTCTCGGGAT+AGG | - | chr7_1:58999112-58999131 | Msa1026810:intron | 45.0% | |
| ATGCTTGTAGTCTCGGGATA+GGG | - | chr7_1:58999113-58999132 | Msa1026810:intron | 45.0% | |
| GGTAATAAGTGCCACATTCC+CGG | + | chr7_1:58999172-58999191 | None:intergenic | 45.0% | |
| ! | CTTTTGGTCCCAAGCTTCTT+TGG | + | chr7_1:58999196-58999215 | None:intergenic | 45.0% |
| AGAAGCTTGGGACCAAAAGT+TGG | - | chr7_1:58999197-58999216 | Msa1026810:intron | 45.0% | |
| ATCTACACCACCACTAGATC+GGG | + | chr7_1:58999759-58999778 | None:intergenic | 45.0% | |
| AAGCTATCCTGGAGAGCTTA+TGG | + | chr7_1:58999910-58999929 | None:intergenic | 45.0% | |
| AAGCTCTCCAGGATAGCTTA+TGG | - | chr7_1:58999911-58999930 | Msa1026810:intron | 45.0% | |
| ! | GCTGTTTCCATAAGCTATCC+TGG | + | chr7_1:58999921-58999940 | None:intergenic | 45.0% |
| TTGCAAATTTCAGCGCTGTG+TGG | - | chr7_1:59000278-59000297 | Msa1026810:intron | 45.0% | |
| TATGGTGCAATCACCTTGCA+AGG | + | chr7_1:59000310-59000329 | None:intergenic | 45.0% | |
| AGCACTCCCCTTAAATATGG+GGG | - | chr7_1:59000474-59000493 | Msa1026810:intron | 45.0% | |
| ACAAGCTTCTTCTCAAGCTC+TGG | + | chr7_1:59000714-59000733 | None:intergenic | 45.0% | |
| CTGAGGAACTGAATCAGCAA+TGG | + | chr7_1:59000739-59000758 | None:intergenic | 45.0% | |
| CAAGAATTCGCGACTTGTGA+GGG | + | chr7_1:59000814-59000833 | None:intergenic | 45.0% | |
| TCAAGAATTCGCGACTTGTG+AGG | + | chr7_1:59000815-59000834 | None:intergenic | 45.0% | |
| TTCTGCACTCCCCTTGAATA+TGG | - | chr7_1:59001081-59001100 | Msa1026810:five_prime_UTR | 45.0% | |
| !!! | TTTATTTATTTATTTTTTGA+TGG | - | chr7_1:58996873-58996892 | Msa1026810:CDS | 5.0% |
| !!! | TTATTTATTTATTTTTTGAT+GGG | - | chr7_1:58996874-58996893 | Msa1026810:CDS | 5.0% |
| !!! | TTATTTATTTTTTTTTTTGT+TGG | - | chr7_1:58997137-58997156 | Msa1026810:intron | 5.0% |
| TCTTCTCTTCTCCAAGCACG+AGG | - | chr7_1:58996679-58996698 | Msa1026810:three_prime_UTR | 50.0% | |
| AATACAGTGGACCTCGTGCT+TGG | + | chr7_1:58996693-58996712 | None:intergenic | 50.0% | |
| !! | GTGTGAGGGTGCTAGATTAC+TGG | + | chr7_1:58996814-58996833 | None:intergenic | 50.0% |
| ! | TACTGTTGGCGGACGTTATG+GGG | + | chr7_1:58997472-58997491 | None:intergenic | 50.0% |
| GATCAAACAGCAGCCGAGAT+TGG | - | chr7_1:58997537-58997556 | Msa1026810:intron | 50.0% | |
| CCCCGTCAATCATAGAAGAG+GGG | + | chr7_1:58997667-58997686 | None:intergenic | 50.0% | |
| CCCCTCTTCTATGATTGACG+GGG | - | chr7_1:58997664-58997683 | Msa1026810:intron | 50.0% | |
| CTATGATTGACGGGGAATGG+AGG | - | chr7_1:58997672-58997691 | Msa1026810:intron | 50.0% | |
| GTGCAAAATCAAGCAGGGGA+AGG | + | chr7_1:58997768-58997787 | None:intergenic | 50.0% | |
| GGACCAACACACTACACACT+TGG | + | chr7_1:58998243-58998262 | None:intergenic | 50.0% | |
| TTTGCCACAAAAAGACGGCG+CGG | + | chr7_1:58998327-58998346 | None:intergenic | 50.0% | |
| ATGAAGGGGAGGAGGTTTAG+GGG | + | chr7_1:58998754-58998773 | None:intergenic | 50.0% | |
| GATGAAGGGGAGGAGGTTTA+GGG | + | chr7_1:58998755-58998774 | None:intergenic | 50.0% | |
| AGATGAAGGGGAGGAGGTTT+AGG | + | chr7_1:58998756-58998775 | None:intergenic | 50.0% | |
| !! | CAACATGTGGAGTTTGCTGC+CGG | - | chr7_1:58999150-58999169 | Msa1026810:intron | 50.0% |
| !! | AACATGTGGAGTTTGCTGCC+GGG | - | chr7_1:58999151-58999170 | Msa1026810:intron | 50.0% |
| TTGGTCCCAAGCTTCTTTGG+TGG | + | chr7_1:58999193-58999212 | None:intergenic | 50.0% | |
| TTCTTTGCCCGATCTAGTGG+TGG | - | chr7_1:58999749-58999768 | Msa1026810:intron | 50.0% | |
| AATTTCAGCGCTGTGTGGTG+CGG | - | chr7_1:59000283-59000302 | Msa1026810:intron | 50.0% | |
| TGCAGGACTTCAGCACTTCA+TGG | - | chr7_1:59000613-59000632 | Msa1026810:intron | 50.0% | |
| GCAGGACTTCAGCACTTCAT+GGG | - | chr7_1:59000614-59000633 | Msa1026810:intron | 50.0% | |
| ! | CTTCTCAAGCTCTGGCTTGT+TGG | + | chr7_1:59000706-59000725 | None:intergenic | 50.0% |
| CGCGACTTGTGAGGGAAAAA+AGG | + | chr7_1:59000806-59000825 | None:intergenic | 50.0% | |
| TGCACTCCCCTTGAATATGG+TGG | - | chr7_1:59001084-59001103 | Msa1026810:five_prime_UTR | 50.0% | |
| ! | TTTGCCGCGCCGTCTTTTTG+TGG | - | chr7_1:58998320-58998339 | Msa1026810:intron | 55.0% |
| ATTTCAGCGCTGTGTGGTGC+GGG | - | chr7_1:59000284-59000303 | Msa1026810:intron | 55.0% | |
| GCACACGGATACCCCGACAA+AGG | + | chr7_1:58997256-58997275 | None:intergenic | 60.0% | |
| GAGGAGGTTTAGGGGTGAGG+GGG | + | chr7_1:58998746-58998765 | None:intergenic | 60.0% | |
| GGAGGAGGTTTAGGGGTGAG+GGG | + | chr7_1:58998747-58998766 | None:intergenic | 60.0% | |
| GGGAGGAGGTTTAGGGGTGA+GGG | + | chr7_1:58998748-58998767 | None:intergenic | 60.0% | |
| !! | GGAGTTTGCTGCCGGGAATG+TGG | - | chr7_1:58999158-58999177 | Msa1026810:intron | 60.0% |
| GGGGAGGAGGTTTAGGGGTG+AGG | + | chr7_1:58998749-58998768 | None:intergenic | 65.0% | |
| TGTGTGGTGCGGGCCTTGCA+AGG | - | chr7_1:59000294-59000313 | Msa1026810:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 58996513 | 59001110 | 58996513 | ID=Msa1026810;Name=Msa1026810 |
| chr7_1 | mRNA | 58996513 | 59001110 | 58996513 | ID=Msa1026810-mRNA-1;Parent=Msa1026810;Name=Msa1026810-mRNA-1;_AED=0.16;_eAED=0.16;_QI=343|0.8|0.83|1|0.8|0.66|6|340|163 |
| chr7_1 | exon | 58996513 | 58997005 | 58996513 | ID=Msa1026810-mRNA-1:exon:11912;Parent=Msa1026810-mRNA-1 |
| chr7_1 | exon | 58997227 | 58997349 | 58997227 | ID=Msa1026810-mRNA-1:exon:11911;Parent=Msa1026810-mRNA-1 |
| chr7_1 | exon | 58998378 | 58998500 | 58998378 | ID=Msa1026810-mRNA-1:exon:11910;Parent=Msa1026810-mRNA-1 |
| chr7_1 | exon | 58998599 | 58998670 | 58998599 | ID=Msa1026810-mRNA-1:exon:11909;Parent=Msa1026810-mRNA-1 |
| chr7_1 | exon | 58999519 | 58999622 | 58999519 | ID=Msa1026810-mRNA-1:exon:11908;Parent=Msa1026810-mRNA-1 |
| chr7_1 | exon | 59000851 | 59001110 | 59000851 | ID=Msa1026810-mRNA-1:exon:11907;Parent=Msa1026810-mRNA-1 |
| chr7_1 | five_prime_UTR | 59000851 | 59001110 | 59000851 | ID=Msa1026810-mRNA-1:five_prime_utr;Parent=Msa1026810-mRNA-1 |
| chr7_1 | five_prime_UTR | 58999540 | 58999622 | 58999540 | ID=Msa1026810-mRNA-1:five_prime_utr;Parent=Msa1026810-mRNA-1 |
| chr7_1 | CDS | 58999519 | 58999539 | 58999519 | ID=Msa1026810-mRNA-1:cds;Parent=Msa1026810-mRNA-1 |
| chr7_1 | CDS | 58998599 | 58998670 | 58998599 | ID=Msa1026810-mRNA-1:cds;Parent=Msa1026810-mRNA-1 |
| chr7_1 | CDS | 58998378 | 58998500 | 58998378 | ID=Msa1026810-mRNA-1:cds;Parent=Msa1026810-mRNA-1 |
| chr7_1 | CDS | 58997227 | 58997349 | 58997227 | ID=Msa1026810-mRNA-1:cds;Parent=Msa1026810-mRNA-1 |
| chr7_1 | CDS | 58996853 | 58997005 | 58996853 | ID=Msa1026810-mRNA-1:cds;Parent=Msa1026810-mRNA-1 |
| chr7_1 | three_prime_UTR | 58996513 | 58996852 | 58996513 | ID=Msa1026810-mRNA-1:three_prime_utr;Parent=Msa1026810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
