Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1452110 | sp|Q9C9Y6|TRXH9_ARATH | 71.875 | 128 | 36 | 0 | 36 | 163 | 11 | 138 | 4.93e-68 | 206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1452110 | D8L5E3 | 85.276 | 163 | 0 | 1 | 1 | 163 | 1 | 139 | 2.84e-93 | 276 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1026780 | Msa1452110 | 0.956171 | 5.525470e-114 | -8.615850e-47 |
| Msa1026810 | Msa1452110 | 0.955818 | 1.258178e-113 | -8.615850e-47 |
| Msa1154180 | Msa1452110 | 0.901783 | 1.889988e-78 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1452110 | MtrunA17_Chr7g0245141 | 85.276 | 163 | 0 | 1 | 1 | 163 | 1 | 139 | 5.46e-97 | 276 |
| Msa1452110 | MtrunA17_Chr8g0334481 | 65.584 | 154 | 31 | 1 | 1 | 154 | 1 | 132 | 2.71e-72 | 213 |
| Msa1452110 | MtrunA17_Chr1g0155721 | 39.091 | 110 | 67 | 0 | 48 | 157 | 6 | 115 | 2.18e-29 | 104 |
| Msa1452110 | MtrunA17_Chr3g0142051 | 44.554 | 101 | 56 | 0 | 48 | 148 | 6 | 106 | 3.47e-29 | 103 |
| Msa1452110 | MtrunA17_Chr5g0404831 | 43.269 | 104 | 59 | 0 | 48 | 151 | 8 | 111 | 4.65e-29 | 103 |
| Msa1452110 | MtrunA17_Chr8g0393201 | 36.066 | 122 | 78 | 0 | 30 | 151 | 209 | 330 | 1.43e-27 | 105 |
| Msa1452110 | MtrunA17_Chr7g0216481 | 41.935 | 93 | 54 | 0 | 59 | 151 | 37 | 129 | 7.20e-25 | 93.2 |
| Msa1452110 | MtrunA17_Chr2g0280411 | 36.036 | 111 | 71 | 0 | 41 | 151 | 2 | 112 | 1.73e-23 | 89.4 |
| Msa1452110 | MtrunA17_Chr2g0319291 | 36.364 | 110 | 70 | 0 | 50 | 159 | 12 | 121 | 3.64e-23 | 88.6 |
| Msa1452110 | MtrunA17_Chr4g0042051 | 35.294 | 102 | 66 | 0 | 50 | 151 | 12 | 113 | 2.83e-21 | 84.0 |
| Msa1452110 | MtrunA17_Chr5g0415771 | 40.659 | 91 | 54 | 0 | 59 | 149 | 30 | 120 | 1.85e-17 | 73.9 |
| Msa1452110 | MtrunA17_Chr5g0415741 | 36.190 | 105 | 67 | 0 | 47 | 151 | 17 | 121 | 1.56e-16 | 71.6 |
| Msa1452110 | MtrunA17_Chr7g0264661 | 29.126 | 103 | 71 | 1 | 49 | 151 | 24 | 124 | 6.57e-16 | 70.1 |
| Msa1452110 | MtrunA17_Chr4g0052481 | 30.928 | 97 | 65 | 1 | 53 | 147 | 64 | 160 | 7.09e-16 | 70.9 |
| Msa1452110 | MtrunA17_Chr5g0415761 | 35.922 | 103 | 66 | 0 | 47 | 149 | 19 | 121 | 1.54e-15 | 68.9 |
| Msa1452110 | MtrunA17_Chr7g0249461 | 39.744 | 78 | 46 | 1 | 71 | 147 | 99 | 176 | 8.35e-12 | 60.5 |
| Msa1452110 | MtrunA17_Chr3g0125821 | 33.803 | 71 | 46 | 1 | 73 | 142 | 89 | 159 | 6.09e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1452110 | AT3G08710.2 | 71.875 | 128 | 36 | 0 | 36 | 163 | 11 | 138 | 5.01e-69 | 206 |
| Msa1452110 | AT3G08710.3 | 71.875 | 128 | 36 | 0 | 36 | 163 | 11 | 138 | 5.01e-69 | 206 |
| Msa1452110 | AT3G08710.1 | 71.875 | 128 | 36 | 0 | 36 | 163 | 11 | 138 | 5.01e-69 | 206 |
| Msa1452110 | AT3G56420.1 | 51.376 | 109 | 53 | 0 | 48 | 156 | 40 | 148 | 1.16e-37 | 127 |
| Msa1452110 | AT3G56420.2 | 51.376 | 109 | 53 | 0 | 48 | 156 | 40 | 148 | 1.16e-37 | 127 |
| Msa1452110 | AT3G56420.3 | 51.376 | 109 | 53 | 0 | 48 | 156 | 40 | 148 | 1.16e-37 | 127 |
| Msa1452110 | AT2G40790.2 | 49.107 | 112 | 57 | 0 | 45 | 156 | 37 | 148 | 1.85e-36 | 124 |
| Msa1452110 | AT2G40790.1 | 49.107 | 112 | 57 | 0 | 45 | 156 | 37 | 148 | 1.85e-36 | 124 |
| Msa1452110 | AT3G51030.1 | 43.269 | 104 | 59 | 0 | 48 | 151 | 6 | 109 | 2.67e-30 | 106 |
| Msa1452110 | AT1G45145.1 | 40.000 | 105 | 63 | 0 | 48 | 152 | 5 | 109 | 2.93e-28 | 101 |
| Msa1452110 | AT1G19730.1 | 41.509 | 106 | 61 | 1 | 48 | 152 | 6 | 111 | 1.54e-26 | 97.4 |
| Msa1452110 | AT1G11530.1 | 38.462 | 104 | 64 | 0 | 48 | 151 | 2 | 105 | 2.21e-24 | 92.0 |
| Msa1452110 | AT5G39950.1 | 37.755 | 98 | 61 | 0 | 54 | 151 | 31 | 128 | 4.68e-24 | 91.7 |
| Msa1452110 | AT5G42980.1 | 38.235 | 102 | 63 | 0 | 46 | 147 | 3 | 104 | 8.08e-24 | 90.5 |
| Msa1452110 | AT3G17880.2 | 34.752 | 141 | 88 | 2 | 21 | 157 | 232 | 372 | 9.16e-24 | 95.9 |
| Msa1452110 | AT3G17880.1 | 34.752 | 141 | 88 | 2 | 21 | 157 | 239 | 379 | 1.18e-23 | 95.5 |
| Msa1452110 | AT1G59730.1 | 37.500 | 104 | 65 | 0 | 48 | 151 | 21 | 124 | 1.99e-23 | 89.7 |
| Msa1452110 | AT1G69880.1 | 35.354 | 99 | 64 | 0 | 53 | 151 | 42 | 140 | 2.89e-18 | 77.0 |
| Msa1452110 | AT3G53220.1 | 30.769 | 104 | 70 | 1 | 48 | 151 | 21 | 122 | 4.01e-16 | 70.9 |
| Msa1452110 | AT5G16400.1 | 33.088 | 136 | 83 | 4 | 17 | 147 | 43 | 175 | 2.11e-14 | 67.8 |
| Msa1452110 | AT2G35010.2 | 30.693 | 101 | 68 | 1 | 50 | 148 | 86 | 186 | 3.28e-13 | 64.7 |
| Msa1452110 | AT2G35010.1 | 30.693 | 101 | 68 | 1 | 50 | 148 | 86 | 186 | 3.28e-13 | 64.7 |
| Msa1452110 | AT3G02730.1 | 38.462 | 78 | 47 | 1 | 71 | 147 | 88 | 165 | 1.72e-11 | 59.7 |
| Msa1452110 | AT1G31020.1 | 29.358 | 109 | 72 | 2 | 45 | 148 | 43 | 151 | 3.96e-11 | 58.5 |
Find 65 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGGCTTTCAAATATTTAAA+TGG | 0.192746 | tig0033666:-9261 | Msa1452110:exon |
| TCTTTGCTTCTTCCAACTTT+TGG | 0.218358 | tig0033666:+8117 | None:intergenic |
| TTTCTGTTCTTAACCACTTT+TGG | 0.240630 | tig0033666:-8358 | Msa1452110:CDS |
| CTTCTCAAGCTCTGGCTTGT+TGG | 0.253102 | tig0033666:+6625 | None:intergenic |
| GGAATTTGTTCTGCTGAAAT+AGG | 0.269571 | tig0033666:-9325 | Msa1452110:five_prime_UTR |
| TTCTGCACTCCCCTTGAATA+TGG | 0.274707 | tig0033666:-6247 | Msa1452110:three_prime_UTR |
| AATTGTGTTTAAACAAGTTT+TGG | 0.293868 | tig0033666:+10807 | None:intergenic |
| CGGCTTTCAAATATTTAAAT+GGG | 0.329455 | tig0033666:-9260 | Msa1452110:exon |
| TCAGACATCTCGCAGTAATA+TGG | 0.336837 | tig0033666:+7003 | None:intergenic |
| ATTCATGTTTGTTGATGCTT+CGG | 0.368552 | tig0033666:-6548 | Msa1452110:three_prime_UTR |
| GGTAATAAGTGCCACATTCC+CGG | 0.372882 | tig0033666:+8157 | None:intergenic |
| ACTTTCTTCTTTCTTAAAGA+TGG | 0.380390 | tig0033666:-6674 | Msa1452110:CDS |
| GTTCATCCACATCAACTAAT+AGG | 0.380538 | tig0033666:+6959 | None:intergenic |
| CAACAACTTGACAAACTTGT+TGG | 0.404290 | tig0033666:-6650 | Msa1452110:CDS |
| AAAGAAAACTTACCGATTTG+AGG | 0.407940 | tig0033666:+10563 | None:intergenic |
| TGCAGGACTTCAGCACTTCA+TGG | 0.415805 | tig0033666:-6715 | Msa1452110:intron |
| TCCTTTCCGTATACCAAAAG+TGG | 0.430289 | tig0033666:+8345 | None:intergenic |
| TATTTAAATGGGGAATTGCT+TGG | 0.430735 | tig0033666:-9249 | Msa1452110:exon |
| ACAAGCTTCTTCTCAAGCTC+TGG | 0.435251 | tig0033666:+6617 | None:intergenic |
| CTTTCTGTTTCACCTCAAAT+CGG | 0.437943 | tig0033666:-10575 | Msa1452110:intron |
| ATTTCAGCGCTGTGTGGTGC+GGG | 0.443661 | tig0033666:-7044 | Msa1452110:CDS |
| CAATAGACTTATGATTTAAG+TGG | 0.466278 | tig0033666:-6301 | Msa1452110:three_prime_UTR |
| TTGGTCCCAAGCTTCTTTGG+TGG | 0.470738 | tig0033666:+8136 | None:intergenic |
| AATGGGGAATTGCTTGGCTA+AGG | 0.472308 | tig0033666:-9243 | Msa1452110:intron |
| AAATGTAACCACCATATTCA+AGG | 0.472327 | tig0033666:+6236 | None:intergenic |
| AATGCTTGTAGTCTCGGGAT+AGG | 0.474668 | tig0033666:-8214 | Msa1452110:intron |
| TGTGTGGTGCGGGCCTTGCA+AGG | 0.481266 | tig0033666:-7034 | Msa1452110:CDS |
| TCTTTAAGAAAGAAGAAAGT+TGG | 0.487293 | tig0033666:+6677 | None:intergenic |
| TATTACCACCAAAGAAGCTT+GGG | 0.487323 | tig0033666:-8141 | Msa1452110:CDS |
| CATTAAAGTTTACAAGTTAG+CGG | 0.487533 | tig0033666:-9280 | Msa1452110:five_prime_UTR |
| GAGAAGATAAAGTAGTATTG+TGG | 0.497839 | tig0033666:+10663 | None:intergenic |
| AATACAGTGGACCTCGTGCT+TGG | 0.502036 | tig0033666:+10636 | None:intergenic |
| AAAACAAGGAATAATAGAAA+AGG | 0.508546 | tig0033666:-8323 | Msa1452110:intron |
| ATGCTTGTAGTCTCGGGATA+GGG | 0.508948 | tig0033666:-8213 | Msa1452110:intron |
| AGAAGCTTGGGACCAAAAGT+TGG | 0.512115 | tig0033666:-8129 | Msa1452110:CDS |
| GCAGGACTTCAGCACTTCAT+GGG | 0.516790 | tig0033666:-6714 | Msa1452110:intron |
| AAAGTTGGAAGAAGCAAAGA+AGG | 0.520011 | tig0033666:-8114 | Msa1452110:CDS |
| AATTTCAGCGCTGTGTGGTG+CGG | 0.527326 | tig0033666:-7045 | Msa1452110:CDS |
| CAAGAATTCGCGACTTGTGA+GGG | 0.529543 | tig0033666:+6517 | None:intergenic |
| TTATTACCACCAAAGAAGCT+TGG | 0.535851 | tig0033666:-8142 | Msa1452110:CDS |
| TGCACTCCCCTTGAATATGG+TGG | 0.537234 | tig0033666:-6244 | Msa1452110:three_prime_UTR |
| CAACATGTGGAGTTTGCTGC+CGG | 0.540698 | tig0033666:-8176 | Msa1452110:CDS |
| AATGTAACCACCATATTCAA+GGG | 0.540798 | tig0033666:+6237 | None:intergenic |
| TATGGTGCAATCACCTTGCA+AGG | 0.556546 | tig0033666:+7021 | None:intergenic |
| AACATGTGGAGTTTGCTGCC+GGG | 0.559586 | tig0033666:-8175 | Msa1452110:CDS |
| GATGTTCCTATTAGTTGATG+TGG | 0.576876 | tig0033666:-6965 | Msa1452110:CDS |
| AAGAAAGAAGAAAGTTGGTG+TGG | 0.580578 | tig0033666:+6682 | None:intergenic |
| GGCTTTCAAATATTTAAATG+GGG | 0.589008 | tig0033666:-9259 | Msa1452110:exon |
| GGAGTTTGCTGCCGGGAATG+TGG | 0.597443 | tig0033666:-8168 | Msa1452110:CDS |
| TAACAATAATAATTGTGTTG+TGG | 0.604307 | tig0033666:+10696 | None:intergenic |
| GTTTAGAAGCACTCATGTCA+TGG | 0.605192 | tig0033666:+6493 | None:intergenic |
| TGAAATAGGCGGTCTTTCGT+CGG | 0.607226 | tig0033666:-9311 | Msa1452110:five_prime_UTR |
| TCAAGAATTCGCGACTTGTG+AGG | 0.608567 | tig0033666:+6516 | None:intergenic |
| TTGGAAGAAGCAAAGAAGGA+TGG | 0.617820 | tig0033666:-8110 | Msa1452110:CDS |
| ATTGTGAAAGTAGAGACAGA+AGG | 0.622029 | tig0033666:+10608 | None:intergenic |
| AAATAATTCAAAGACACTCA+CGG | 0.623663 | tig0033666:+6464 | None:intergenic |
| CTGAGGAACTGAATCAGCAA+TGG | 0.626817 | tig0033666:+6592 | None:intergenic |
| ACAAGTCACTGCTTATTCTG+AGG | 0.628145 | tig0033666:+6575 | None:intergenic |
| TCTTCTCTTCTCCAAGCACG+AGG | 0.632107 | tig0033666:-10647 | Msa1452110:five_prime_UTR |
| ATTTGTTCTGCTGAAATAGG+CGG | 0.639737 | tig0033666:-9322 | Msa1452110:five_prime_UTR |
| GGTATACGGAAAGGAAAACA+AGG | 0.648844 | tig0033666:-8337 | Msa1452110:CDS |
| CAATGATTCTGATCAACATG+TGG | 0.654075 | tig0033666:-8189 | Msa1452110:CDS |
| ATGTAACCACCATATTCAAG+GGG | 0.655718 | tig0033666:+6238 | None:intergenic |
| ACAGAAGGATACAAATACAG+TGG | 0.686734 | tig0033666:+10623 | None:intergenic |
| TTGCAAATTTCAGCGCTGTG+TGG | 0.691109 | tig0033666:-7050 | Msa1452110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTATTTATTTTTTGATG+GGG | - | tig0033666:6602-6621 | Msa1452110:CDS | 10.0% |
| !!! | CTTTTCAATTAAATAATTTA+TGG | + | tig0033666:9392-9411 | None:intergenic | 10.0% |
| !!! | TATACATTTTAATCAAATAT+GGG | + | tig0033666:9863-9882 | None:intergenic | 10.0% |
| !!! | TTATACATTTTAATCAAATA+TGG | + | tig0033666:9864-9883 | None:intergenic | 10.0% |
| !!! | TGTTTTTTTTACTGAAAAAT+AGG | + | tig0033666:6312-6331 | None:intergenic | 15.0% |
| !! | AAAGTAAATAAATTCCAAAT+GGG | + | tig0033666:6798-6817 | None:intergenic | 15.0% |
| !!! | CTTTATTTTATCTTTTGTTA+AGG | - | tig0033666:9685-9704 | Msa1452110:intron | 15.0% |
| !!! | GCTATATAATTTATTTTCTT+TGG | - | tig0033666:9941-9960 | Msa1452110:intron | 15.0% |
| !! | ATTATCATATATCAAATCTT+TGG | - | tig0033666:10246-10265 | Msa1452110:intron | 15.0% |
| !!! | TTTGAATTATTTTTTTTCCT+TGG | - | tig0033666:10600-10619 | Msa1452110:five_prime_UTR | 15.0% |
| !!! | AATTGTGTTTAAACAAGTTT+TGG | + | tig0033666:6249-6268 | None:intergenic | 20.0% |
| !! | TAACAATAATAATTGTGTTG+TGG | + | tig0033666:6360-6379 | None:intergenic | 20.0% |
| !! | GAAAATCAAATTGAAAACTA+AGG | + | tig0033666:6563-6582 | None:intergenic | 20.0% |
| !! | AAGTAAATAAATTCCAAATG+GGG | + | tig0033666:6797-6816 | None:intergenic | 20.0% |
| !! | CAAAGTAAATAAATTCCAAA+TGG | + | tig0033666:6799-6818 | None:intergenic | 20.0% |
| !! | AGGAAATAATTTCTGATATA+TGG | - | tig0033666:7532-7551 | Msa1452110:intron | 20.0% |
| !! | ATATAATATCTCTATTGTTC+TGG | - | tig0033666:7695-7714 | Msa1452110:intron | 20.0% |
| !! | TCATTAAAAGTTAAAGTTTG+AGG | - | tig0033666:7877-7896 | Msa1452110:intron | 20.0% |
| !! | TGTAAAAGTTAATCTCTATT+TGG | + | tig0033666:8095-8114 | None:intergenic | 20.0% |
| !! | AAAACAAGGAATAATAGAAA+AGG | - | tig0033666:8730-8749 | Msa1452110:intron | 20.0% |
| !! | CTCAGTAAAGATTTATATTA+AGG | - | tig0033666:9365-9384 | Msa1452110:intron | 20.0% |
| !! | TAAAAAGTAAGATAGAGTTA+AGG | + | tig0033666:9920-9939 | None:intergenic | 20.0% |
| !!! | ATGTTTTATATTTACATCCA+AGG | + | tig0033666:10620-10639 | None:intergenic | 20.0% |
| ! | TGATCACAAATCCAAATATT+GGG | - | tig0033666:6758-6777 | Msa1452110:intron | 25.0% |
| ! | CATTAAAAACTCCCAATATT+TGG | + | tig0033666:6772-6791 | None:intergenic | 25.0% |
| !! | TTTTTCGTTTTCCTTTTTTC+CGG | + | tig0033666:7146-7165 | None:intergenic | 25.0% |
| ! | AAATAAAAATCATTCCGAAC+CGG | + | tig0033666:7344-7363 | None:intergenic | 25.0% |
| !!! | TTGTTTTTTGAGTCTTTAAC+TGG | - | tig0033666:7425-7444 | Msa1452110:intron | 25.0% |
| ! | CATTAAAGTTTACAAGTTAG+CGG | - | tig0033666:7773-7792 | Msa1452110:intron | 25.0% |
| ! | CGGCTTTCAAATATTTAAAT+GGG | - | tig0033666:7793-7812 | Msa1452110:intron | 25.0% |
| ! | GGCTTTCAAATATTTAAATG+GGG | - | tig0033666:7794-7813 | Msa1452110:intron | 25.0% |
| ! | GTGGCAAAAACTTATTTATT+TGG | - | tig0033666:8066-8085 | Msa1452110:intron | 25.0% |
| !! | TAGAAACGACAGATTATTTT+AGG | - | tig0033666:8244-8263 | Msa1452110:intron | 25.0% |
| !!! | AGAAACGACAGATTATTTTA+GGG | - | tig0033666:8245-8264 | Msa1452110:intron | 25.0% |
| ! | TATCACCATTAAAAGATGAA+GGG | + | tig0033666:8496-8515 | None:intergenic | 25.0% |
| ! | TTATCACCATTAAAAGATGA+AGG | + | tig0033666:8497-8516 | None:intergenic | 25.0% |
| !! | CATCTTTTAATGGTGATAAA+CGG | - | tig0033666:8498-8517 | Msa1452110:intron | 25.0% |
| !! | TTACTTCTAGTTACAGATTA+GGG | + | tig0033666:8647-8666 | None:intergenic | 25.0% |
| !! | ATTACTTCTAGTTACAGATT+AGG | + | tig0033666:8648-8667 | None:intergenic | 25.0% |
| ! | TGAACTGCATATTAAAAAGT+AGG | + | tig0033666:8992-9011 | None:intergenic | 25.0% |
| ! | ATGCAGTTCAATAAAATTGA+AGG | - | tig0033666:9002-9021 | Msa1452110:intron | 25.0% |
| ! | ACATTTGTATACTTGGTATT+CGG | - | tig0033666:9086-9105 | Msa1452110:intron | 25.0% |
| ! | AAAAATTCCTAACGAGATTA+TGG | + | tig0033666:9135-9154 | None:intergenic | 25.0% |
| !!! | TAATCTCGTTAGGAATTTTT+TGG | - | tig0033666:9135-9154 | Msa1452110:intron | 25.0% |
| !! | TTAGCTTATCTAGATTTTAC+TGG | - | tig0033666:9530-9549 | Msa1452110:intron | 25.0% |
| ! | ATATTGTTTGGTATAGCTTA+TGG | - | tig0033666:9567-9586 | Msa1452110:intron | 25.0% |
| ! | AATAAGCTGGAAAAAACTTA+TGG | + | tig0033666:9611-9630 | None:intergenic | 25.0% |
| !! | ATCTTTGGCTTATATACTTT+AGG | - | tig0033666:10261-10280 | Msa1452110:intron | 25.0% |
| !! | TCTTTAAGAAAGAAGAAAGT+TGG | + | tig0033666:10379-10398 | None:intergenic | 25.0% |
| ! | ACTTTCTTCTTTCTTAAAGA+TGG | - | tig0033666:10379-10398 | Msa1452110:intron | 25.0% |
| ! | AAATAATTCAAAGACACTCA+CGG | + | tig0033666:10592-10611 | None:intergenic | 25.0% |
| ! | CATTATTGTCTAAGAAAAAG+TGG | - | tig0033666:10715-10734 | Msa1452110:five_prime_UTR | 25.0% |
| ! | CAATAGACTTATGATTTAAG+TGG | - | tig0033666:10752-10771 | Msa1452110:five_prime_UTR | 25.0% |
| GAGAAGATAAAGTAGTATTG+TGG | + | tig0033666:6393-6412 | None:intergenic | 30.0% | |
| !! | AAAGAAAACTTACCGATTTG+AGG | + | tig0033666:6493-6512 | None:intergenic | 30.0% |
| AATTGAAAACTAAGGTGTGA+GGG | + | tig0033666:6555-6574 | None:intergenic | 30.0% | |
| AAATTGAAAACTAAGGTGTG+AGG | + | tig0033666:6556-6575 | None:intergenic | 30.0% | |
| TGAGAAACAAGAAAGGAAAA+AGG | + | tig0033666:6729-6748 | None:intergenic | 30.0% | |
| CTGATCACAAATCCAAATAT+TGG | - | tig0033666:6757-6776 | Msa1452110:intron | 30.0% | |
| ! | AGTTTTTAATGTACCCCATT+TGG | - | tig0033666:6781-6800 | Msa1452110:intron | 30.0% |
| AGTACTTGTGTTATGTCTTA+AGG | - | tig0033666:6834-6853 | Msa1452110:intron | 30.0% | |
| AGGGTTAAAGATTGTTTCAA+CGG | - | tig0033666:6955-6974 | Msa1452110:CDS | 30.0% | |
| ! | TTATTTCTCAAACTTGCACA+CGG | + | tig0033666:6998-7017 | None:intergenic | 30.0% |
| !! | TGTACAGATAGTTGTTGTTT+AGG | - | tig0033666:7049-7068 | Msa1452110:CDS | 30.0% |
| !! | GTACAGATAGTTGTTGTTTA+GGG | - | tig0033666:7050-7069 | Msa1452110:CDS | 30.0% |
| ! | TTTTCGTTTTCCTTTTTTCC+GGG | + | tig0033666:7145-7164 | None:intergenic | 30.0% |
| AATGACAAAAGAATCAACTG+CGG | - | tig0033666:7164-7183 | Msa1452110:intron | 30.0% | |
| TGGATAAACTTCTCAAGAAA+CGG | + | tig0033666:7319-7338 | None:intergenic | 30.0% | |
| TTCCTTACATACATTTCTGA+AGG | + | tig0033666:7517-7536 | None:intergenic | 30.0% | |
| ATGGCTAAGTGAACATTTAT+TGG | - | tig0033666:7551-7570 | Msa1452110:intron | 30.0% | |
| TAATATCTCTATTGTTCTGG+TGG | - | tig0033666:7698-7717 | Msa1452110:intron | 30.0% | |
| GCGGCTTTCAAATATTTAAA+TGG | - | tig0033666:7792-7811 | Msa1452110:intron | 30.0% | |
| TATTTAAATGGGGAATTGCT+TGG | - | tig0033666:7804-7823 | Msa1452110:intron | 30.0% | |
| TTGGCTAAGGTAAGAATATT+TGG | - | tig0033666:7823-7842 | Msa1452110:intron | 30.0% | |
| TTTATCAGAGTACAGGATAA+AGG | + | tig0033666:7903-7922 | None:intergenic | 30.0% | |
| TGTACAATTTATCAGAGTAC+AGG | + | tig0033666:7910-7929 | None:intergenic | 30.0% | |
| TAAGATCACTCTATAAGCAA+AGG | - | tig0033666:7932-7951 | Msa1452110:intron | 30.0% | |
| ! | AAGTTTTTGCCACAAAAAGA+CGG | + | tig0033666:8059-8078 | None:intergenic | 30.0% |
| ! | CTGTTTAATTTATCTGCTAC+TGG | + | tig0033666:8154-8173 | None:intergenic | 30.0% |
| GAAACTAATGAAAGCTATGT+AGG | - | tig0033666:8218-8237 | Msa1452110:intron | 30.0% | |
| ATCACCATTAAAAGATGAAG+GGG | + | tig0033666:8495-8514 | None:intergenic | 30.0% | |
| ATCAGTTATGAGAAGGAATA+TGG | + | tig0033666:8571-8590 | None:intergenic | 30.0% | |
| ! | CTGAATTAATACGTTTTCAC+AGG | + | tig0033666:8610-8629 | None:intergenic | 30.0% |
| AACAGAAAAATCACAGATAG+AGG | + | tig0033666:8683-8702 | None:intergenic | 30.0% | |
| ! | TTTCTGTTCTTAACCACTTT+TGG | - | tig0033666:8695-8714 | Msa1452110:intron | 30.0% |
| !! | TCTTAACCACTTTTGGTATA+CGG | - | tig0033666:8702-8721 | Msa1452110:intron | 30.0% |
| ! | GAATAATAGAAAAGGTGTGT+AGG | - | tig0033666:8738-8757 | Msa1452110:intron | 30.0% |
| ! | GTTTTTAATGCTTGTAGTCT+CGG | - | tig0033666:8833-8852 | Msa1452110:intron | 30.0% |
| ! | TTTTTAATGCTTGTAGTCTC+GGG | - | tig0033666:8834-8853 | Msa1452110:intron | 30.0% |
| ATACCAAGTATACAAATGTG+CGG | + | tig0033666:9085-9104 | None:intergenic | 30.0% | |
| ! | ATCTAGATTTTACTGGCATA+AGG | - | tig0033666:9537-9556 | Msa1452110:intron | 30.0% |
| TAAGGACATGCAATATTGTT+TGG | - | tig0033666:9555-9574 | Msa1452110:intron | 30.0% | |
| GTAAACTGTTTATCCAAACA+AGG | - | tig0033666:9763-9782 | Msa1452110:intron | 30.0% | |
| ACTAGCAATTACTGCTAATA+TGG | + | tig0033666:9789-9808 | None:intergenic | 30.0% | |
| GAGTTAAGGAAAATATATGC+TGG | + | tig0033666:9906-9925 | None:intergenic | 30.0% | |
| TTGCCACATGACATATTTAA+GGG | + | tig0033666:10289-10308 | None:intergenic | 30.0% | |
| ! | ATTCATGTTTGTTGATGCTT+CGG | - | tig0033666:10505-10524 | Msa1452110:intron | 30.0% |
| TATTGTCTAAGAAAAAGTGG+TGG | - | tig0033666:10718-10737 | Msa1452110:five_prime_UTR | 30.0% | |
| ACAGAAGGATACAAATACAG+TGG | + | tig0033666:6433-6452 | None:intergenic | 35.0% | |
| ATTGTGAAAGTAGAGACAGA+AGG | + | tig0033666:6448-6467 | None:intergenic | 35.0% | |
| CTTTCTGTTTCACCTCAAAT+CGG | - | tig0033666:6478-6497 | Msa1452110:three_prime_UTR | 35.0% | |
| TACTGGTGCTTGAATAAAAG+AGG | + | tig0033666:6524-6543 | None:intergenic | 35.0% | |
| GATGGGGTTGTTTATATTGA+TGG | - | tig0033666:6618-6637 | Msa1452110:CDS | 35.0% | |
| AAACTGCTGAGAAACAAGAA+AGG | + | tig0033666:6736-6755 | None:intergenic | 35.0% | |
| !!! | TTTTGTTGGTCTTAACCATC+TGG | - | tig0033666:6878-6897 | Msa1452110:intron | 35.0% |
| TCTTAACCATCTGGTTACTA+AGG | - | tig0033666:6887-6906 | Msa1452110:intron | 35.0% | |
| CTTAACCATCTGGTTACTAA+GGG | - | tig0033666:6888-6907 | Msa1452110:intron | 35.0% | |
| TGTCGAGAGGTAATAAAGTA+GGG | - | tig0033666:6936-6955 | Msa1452110:intron | 35.0% | |
| ATGACAAAAGAATCAACTGC+GGG | - | tig0033666:7165-7184 | Msa1452110:intron | 35.0% | |
| TCATATCAGGCATTTACTGT+TGG | + | tig0033666:7213-7232 | None:intergenic | 35.0% | |
| AGTAAATGCCTGATATGAGT+CGG | - | tig0033666:7215-7234 | Msa1452110:intron | 35.0% | |
| CTTGAGAAGTTTATCCAATC+CGG | - | tig0033666:7322-7341 | Msa1452110:intron | 35.0% | |
| CACCTTCAGAAATGTATGTA+AGG | - | tig0033666:7512-7531 | Msa1452110:intron | 35.0% | |
| TATTGTTCTGGTGGAATTCA+GGG | - | tig0033666:7707-7726 | Msa1452110:intron | 35.0% | |
| ! | GGAATTTGTTCTGCTGAAAT+AGG | - | tig0033666:7728-7747 | Msa1452110:intron | 35.0% |
| ATTTGTTCTGCTGAAATAGG+CGG | - | tig0033666:7731-7750 | Msa1452110:intron | 35.0% | |
| ! | GTCAAACATGCTATTTACTG+TGG | - | tig0033666:7850-7869 | Msa1452110:intron | 35.0% |
| !! | TTATGCGTTGATTCTACCAA+AGG | + | tig0033666:7991-8010 | None:intergenic | 35.0% |
| TTTGGTAGAATCAACGCATA+AGG | - | tig0033666:7990-8009 | Msa1452110:intron | 35.0% | |
| CTCAGATGAATTAGAACAAC+TGG | + | tig0033666:8274-8293 | None:intergenic | 35.0% | |
| GTTATGAGAAGGAATATGGA+TGG | + | tig0033666:8567-8586 | None:intergenic | 35.0% | |
| CTGCAATATCAGTTATGAGA+AGG | + | tig0033666:8578-8597 | None:intergenic | 35.0% | |
| CAATGATTCTGATCAACATG+TGG | - | tig0033666:8864-8883 | Msa1452110:intron | 35.0% | |
| TTATTACCACCAAAGAAGCT+TGG | - | tig0033666:8911-8930 | Msa1452110:intron | 35.0% | |
| TATTACCACCAAAGAAGCTT+GGG | - | tig0033666:8912-8931 | Msa1452110:intron | 35.0% | |
| ! | TCTTTGCTTCTTCCAACTTT+TGG | + | tig0033666:8939-8958 | None:intergenic | 35.0% |
| AAAGTTGGAAGAAGCAAAGA+AGG | - | tig0033666:8939-8958 | Msa1452110:intron | 35.0% | |
| AGCAAAACAACACAGCAAAA+TGG | + | tig0033666:9035-9054 | None:intergenic | 35.0% | |
| TTACCGCACATTTGTATACT+TGG | - | tig0033666:9079-9098 | Msa1452110:intron | 35.0% | |
| AATTCCTAACGAGATTATGG+CGG | + | tig0033666:9132-9151 | None:intergenic | 35.0% | |
| !!! | TCTCGTTAGGAATTTTTTGG+CGG | - | tig0033666:9138-9157 | Msa1452110:intron | 35.0% |
| CCAAAAAAAAACAGAGACAC+TGG | + | tig0033666:9447-9466 | None:intergenic | 35.0% | |
| !!! | CCAGTGTCTCTGTTTTTTTT+TGG | - | tig0033666:9444-9463 | Msa1452110:intron | 35.0% |
| ATATCTACACACCACTAGAT+CGG | + | tig0033666:9486-9505 | None:intergenic | 35.0% | |
| ATCTAGTGGTGTGTAGATAT+AGG | - | tig0033666:9486-9505 | Msa1452110:intron | 35.0% | |
| TCTAGTGGTGTGTAGATATA+GGG | - | tig0033666:9487-9506 | Msa1452110:intron | 35.0% | |
| ! | GATGTTCCTATTAGTTGATG+TGG | - | tig0033666:10088-10107 | Msa1452110:intron | 35.0% |
| GTTCATCCACATCAACTAAT+AGG | + | tig0033666:10097-10116 | None:intergenic | 35.0% | |
| TGTTTGTCCCCCATATTTAA+GGG | + | tig0033666:10209-10228 | None:intergenic | 35.0% | |
| ATGTTTGTCCCCCATATTTA+AGG | + | tig0033666:10210-10229 | None:intergenic | 35.0% | |
| TGCCACATGACATATTTAAG+GGG | + | tig0033666:10288-10307 | None:intergenic | 35.0% | |
| GTTGCCACATGACATATTTA+AGG | + | tig0033666:10290-10309 | None:intergenic | 35.0% | |
| GCAACACATTTGATTGAACA+TGG | - | tig0033666:10305-10324 | Msa1452110:intron | 35.0% | |
| !! | AAGAAAGAAGAAAGTTGGTG+TGG | + | tig0033666:10374-10393 | None:intergenic | 35.0% |
| CAACAACTTGACAAACTTGT+TGG | - | tig0033666:10403-10422 | Msa1452110:intron | 35.0% | |
| AAGAAAAAGTGGTGGTTACA+TGG | - | tig0033666:10726-10745 | Msa1452110:five_prime_UTR | 35.0% | |
| TCTTTCCCTTAGTAACCAGA+TGG | + | tig0033666:6896-6915 | None:intergenic | 40.0% | |
| ATCTGGTTACTAAGGGAAAG+AGG | - | tig0033666:6895-6914 | Msa1452110:intron | 40.0% | |
| GTGTCGAGAGGTAATAAAGT+AGG | - | tig0033666:6935-6954 | Msa1452110:intron | 40.0% | |
| TGTTTCAACGGTTCCTTTGT+CGG | - | tig0033666:6967-6986 | Msa1452110:CDS | 40.0% | |
| CTTTATTCGTAACCTAAGCC+CGG | - | tig0033666:7124-7143 | Msa1452110:intron | 40.0% | |
| ! | TTTTCCTTTTTTCCGGGCTT+AGG | + | tig0033666:7139-7158 | None:intergenic | 40.0% |
| TGACAAAAGAATCAACTGCG+GGG | - | tig0033666:7166-7185 | Msa1452110:intron | 40.0% | |
| TATCAGGCATTTACTGTTGG+CGG | + | tig0033666:7210-7229 | None:intergenic | 40.0% | |
| GCATATGTGTTAGCCAATCT+CGG | + | tig0033666:7280-7299 | None:intergenic | 40.0% | |
| GAAGTTTATCCAATCCGGTT+CGG | - | tig0033666:7327-7346 | Msa1452110:intron | 40.0% | |
| AAAATCATTCCGAACCGGAT+TGG | + | tig0033666:7339-7358 | None:intergenic | 40.0% | |
| ! | TGAAGGTGCAAAATCAAGCA+GGG | + | tig0033666:7500-7519 | None:intergenic | 40.0% |
| CATCATGAGCATAGAAGAAC+AGG | + | tig0033666:7613-7632 | None:intergenic | 40.0% | |
| CTATTGTTCTGGTGGAATTC+AGG | - | tig0033666:7706-7725 | Msa1452110:intron | 40.0% | |
| TTTCCAAGTGTGTAGTGTGT+TGG | - | tig0033666:7964-7983 | Msa1452110:intron | 40.0% | |
| GCATACAACACAATACGCAA+AGG | + | tig0033666:8129-8148 | None:intergenic | 40.0% | |
| CAGTTCAAATTACACTGCCT+AGG | - | tig0033666:8311-8330 | Msa1452110:intron | 40.0% | |
| ! | ACTCTTTTCACGAGTTACCT+AGG | + | tig0033666:8331-8350 | None:intergenic | 40.0% |
| ATTAAAAGATGAAGGGGAGG+AGG | + | tig0033666:8489-8508 | None:intergenic | 40.0% | |
| ! | TCCTCCCCTTCATCTTTTAA+TGG | - | tig0033666:8488-8507 | Msa1452110:intron | 40.0% |
| ACCATTAAAAGATGAAGGGG+AGG | + | tig0033666:8492-8511 | None:intergenic | 40.0% | |
| !! | ACCACTTTTGGTATACGGAA+AGG | - | tig0033666:8707-8726 | Msa1452110:intron | 40.0% |
| TCCTTTCCGTATACCAAAAG+TGG | + | tig0033666:8711-8730 | None:intergenic | 40.0% | |
| GGTATACGGAAAGGAAAACA+AGG | - | tig0033666:8716-8735 | Msa1452110:intron | 40.0% | |
| TTGGAAGAAGCAAAGAAGGA+TGG | - | tig0033666:8943-8962 | Msa1452110:intron | 40.0% | |
| ATGTGCGGTAAATTCTAGCA+AGG | + | tig0033666:9070-9089 | None:intergenic | 40.0% | |
| AAAACCGCCATAATCTCGTT+AGG | - | tig0033666:9125-9144 | Msa1452110:intron | 40.0% | |
| CACATGACTTTGAGTCAGTT+TGG | - | tig0033666:9194-9213 | Msa1452110:intron | 40.0% | |
| AAGTTCTTTCGAGCTAGAAG+TGG | - | tig0033666:9409-9428 | Msa1452110:intron | 40.0% | |
| GCTAGAAGTGGATCTGAATT+AGG | - | tig0033666:9421-9440 | Msa1452110:intron | 40.0% | |
| ! | TTTTTCTTTGCCCGATCTAG+TGG | - | tig0033666:9472-9491 | Msa1452110:intron | 40.0% |
| TATCTACACACCACTAGATC+GGG | + | tig0033666:9485-9504 | None:intergenic | 40.0% | |
| GAGAGCTTATGGAAATAAGC+TGG | + | tig0033666:9624-9643 | None:intergenic | 40.0% | |
| CTTATTTCCATAAGCTCTCC+AGG | - | tig0033666:9625-9644 | Msa1452110:intron | 40.0% | |
| !! | ACTGCTAATATGGCCTTGTT+TGG | + | tig0033666:9779-9798 | None:intergenic | 40.0% |
| ACTAAAGCTCCTTGTTCAAC+AGG | - | tig0033666:9977-9996 | Msa1452110:intron | 40.0% | |
| TTGCAATCACCTGTTGAACA+AGG | + | tig0033666:9989-10008 | None:intergenic | 40.0% | |
| TCAGACATCTCGCAGTAATA+TGG | + | tig0033666:10053-10072 | None:intergenic | 40.0% | |
| ACTAGCACTCCCCTTAAATA+TGG | - | tig0033666:10196-10215 | Msa1452110:intron | 40.0% | |
| CTAGCACTCCCCTTAAATAT+GGG | - | tig0033666:10197-10216 | Msa1452110:intron | 40.0% | |
| TAGCACTCCCCTTAAATATG+GGG | - | tig0033666:10198-10217 | Msa1452110:intron | 40.0% | |
| GTTTGTCCCCCATATTTAAG+GGG | + | tig0033666:10208-10227 | None:intergenic | 40.0% | |
| GTCCCCTTAAATATGTCATG+TGG | - | tig0033666:10283-10302 | Msa1452110:intron | 40.0% | |
| AACATGGTTGTGTATGTTGC+AGG | - | tig0033666:10321-10340 | Msa1452110:intron | 40.0% | |
| ACAAGTCACTGCTTATTCTG+AGG | + | tig0033666:10481-10500 | None:intergenic | 40.0% | |
| !! | GTTTAGAAGCACTCATGTCA+TGG | + | tig0033666:10563-10582 | None:intergenic | 40.0% |
| ! | GGGAAAGAGGTCTTGTAATC+TGG | - | tig0033666:6908-6927 | Msa1452110:intron | 45.0% |
| ! | TAATCTGGAGTTGTGTCGAG+AGG | - | tig0033666:6923-6942 | Msa1452110:intron | 45.0% |
| GTTTCAACGGTTCCTTTGTC+GGG | - | tig0033666:6968-6987 | Msa1452110:CDS | 45.0% | |
| TTTCAACGGTTCCTTTGTCG+GGG | - | tig0033666:6969-6988 | Msa1452110:CDS | 45.0% | |
| GTAACCTAAGCCCGGAAAAA+AGG | - | tig0033666:7132-7151 | Msa1452110:intron | 45.0% | |
| ! | TTACTGTTGGCGGACGTTAT+GGG | + | tig0033666:7200-7219 | None:intergenic | 45.0% |
| ! | TTTACTGTTGGCGGACGTTA+TGG | + | tig0033666:7201-7220 | None:intergenic | 45.0% |
| ! | AGTCTTGTCCGACTCATATC+AGG | + | tig0033666:7226-7245 | None:intergenic | 45.0% |
| CACCCCTCTTCTATGATTGA+CGG | - | tig0033666:7389-7408 | Msa1452110:intron | 45.0% | |
| ACCCCTCTTCTATGATTGAC+GGG | - | tig0033666:7390-7409 | Msa1452110:intron | 45.0% | |
| TCCCCGTCAATCATAGAAGA+GGG | + | tig0033666:7395-7414 | None:intergenic | 45.0% | |
| TTCCCCGTCAATCATAGAAG+AGG | + | tig0033666:7396-7415 | None:intergenic | 45.0% | |
| CTTCTATGATTGACGGGGAA+TGG | - | tig0033666:7396-7415 | Msa1452110:intron | 45.0% | |
| TATGATTGACGGGGAATGGA+GGG | - | tig0033666:7400-7419 | Msa1452110:intron | 45.0% | |
| ! | GAAGGTGCAAAATCAAGCAG+GGG | + | tig0033666:7499-7518 | None:intergenic | 45.0% |
| ! | CTGAAGGTGCAAAATCAAGC+AGG | + | tig0033666:7501-7520 | None:intergenic | 45.0% |
| TGAAATAGGCGGTCTTTCGT+CGG | - | tig0033666:7742-7761 | Msa1452110:intron | 45.0% | |
| AATGGGGAATTGCTTGGCTA+AGG | - | tig0033666:7810-7829 | Msa1452110:intron | 45.0% | |
| ! | TGTGTAGTGTGTTGGTCCTT+TGG | - | tig0033666:7972-7991 | Msa1452110:intron | 45.0% |
| AATGCTTGTAGTCTCGGGAT+AGG | - | tig0033666:8839-8858 | Msa1452110:intron | 45.0% | |
| ATGCTTGTAGTCTCGGGATA+GGG | - | tig0033666:8840-8859 | Msa1452110:intron | 45.0% | |
| GGTAATAAGTGCCACATTCC+CGG | + | tig0033666:8899-8918 | None:intergenic | 45.0% | |
| ! | CTTTTGGTCCCAAGCTTCTT+TGG | + | tig0033666:8923-8942 | None:intergenic | 45.0% |
| AGAAGCTTGGGACCAAAAGT+TGG | - | tig0033666:8924-8943 | Msa1452110:intron | 45.0% | |
| AAGCTATCCTGGAGAGCTTA+TGG | + | tig0033666:9635-9654 | None:intergenic | 45.0% | |
| AAGCTCTCCAGGATAGCTTA+TGG | - | tig0033666:9636-9655 | Msa1452110:intron | 45.0% | |
| ! | GCTGTTTCCATAAGCTATCC+TGG | + | tig0033666:9646-9665 | None:intergenic | 45.0% |
| TTGCAAATTTCAGCGCTGTG+TGG | - | tig0033666:10003-10022 | Msa1452110:intron | 45.0% | |
| TATGGTGCAATCACCTTGCA+AGG | + | tig0033666:10035-10054 | None:intergenic | 45.0% | |
| AGCACTCCCCTTAAATATGG+GGG | - | tig0033666:10199-10218 | Msa1452110:intron | 45.0% | |
| ACAAGCTTCTTCTCAAGCTC+TGG | + | tig0033666:10439-10458 | None:intergenic | 45.0% | |
| CTGAGGAACTGAATCAGCAA+TGG | + | tig0033666:10464-10483 | None:intergenic | 45.0% | |
| CAAGAATTCGCGACTTGTGA+GGG | + | tig0033666:10539-10558 | None:intergenic | 45.0% | |
| TCAAGAATTCGCGACTTGTG+AGG | + | tig0033666:10540-10559 | None:intergenic | 45.0% | |
| TTCTGCACTCCCCTTGAATA+TGG | - | tig0033666:10806-10825 | Msa1452110:five_prime_UTR | 45.0% | |
| !!! | TTTATTTATTTATTTTTTGA+TGG | - | tig0033666:6600-6619 | Msa1452110:CDS | 5.0% |
| !!! | TTATTTATTTATTTTTTGAT+GGG | - | tig0033666:6601-6620 | Msa1452110:CDS | 5.0% |
| !!! | TTATTTATTTTTTTTTTTGT+TGG | - | tig0033666:6864-6883 | Msa1452110:intron | 5.0% |
| TCTTCTCTTCTCCAAGCACG+AGG | - | tig0033666:6406-6425 | Msa1452110:three_prime_UTR | 50.0% | |
| AATACAGTGGACCTCGTGCT+TGG | + | tig0033666:6420-6439 | None:intergenic | 50.0% | |
| !! | GTGTGAGGGTGCTAGATTAC+TGG | + | tig0033666:6541-6560 | None:intergenic | 50.0% |
| ! | TACTGTTGGCGGACGTTATG+GGG | + | tig0033666:7199-7218 | None:intergenic | 50.0% |
| GATCAAACAGCAGCCGAGAT+TGG | - | tig0033666:7264-7283 | Msa1452110:intron | 50.0% | |
| CCCCGTCAATCATAGAAGAG+GGG | + | tig0033666:7394-7413 | None:intergenic | 50.0% | |
| CCCCTCTTCTATGATTGACG+GGG | - | tig0033666:7391-7410 | Msa1452110:intron | 50.0% | |
| CTATGATTGACGGGGAATGG+AGG | - | tig0033666:7399-7418 | Msa1452110:intron | 50.0% | |
| GTGCAAAATCAAGCAGGGGA+AGG | + | tig0033666:7495-7514 | None:intergenic | 50.0% | |
| GGACCAACACACTACACACT+TGG | + | tig0033666:7970-7989 | None:intergenic | 50.0% | |
| TTTGCCACAAAAAGACGGCG+CGG | + | tig0033666:8054-8073 | None:intergenic | 50.0% | |
| ATGAAGGGGAGGAGGTTTAG+GGG | + | tig0033666:8481-8500 | None:intergenic | 50.0% | |
| GATGAAGGGGAGGAGGTTTA+GGG | + | tig0033666:8482-8501 | None:intergenic | 50.0% | |
| AGATGAAGGGGAGGAGGTTT+AGG | + | tig0033666:8483-8502 | None:intergenic | 50.0% | |
| !! | CAACATGTGGAGTTTGCTGC+CGG | - | tig0033666:8877-8896 | Msa1452110:intron | 50.0% |
| !! | AACATGTGGAGTTTGCTGCC+GGG | - | tig0033666:8878-8897 | Msa1452110:intron | 50.0% |
| TTGGTCCCAAGCTTCTTTGG+TGG | + | tig0033666:8920-8939 | None:intergenic | 50.0% | |
| AATTTCAGCGCTGTGTGGTG+CGG | - | tig0033666:10008-10027 | Msa1452110:intron | 50.0% | |
| TGCAGGACTTCAGCACTTCA+TGG | - | tig0033666:10338-10357 | Msa1452110:intron | 50.0% | |
| GCAGGACTTCAGCACTTCAT+GGG | - | tig0033666:10339-10358 | Msa1452110:intron | 50.0% | |
| ! | CTTCTCAAGCTCTGGCTTGT+TGG | + | tig0033666:10431-10450 | None:intergenic | 50.0% |
| CGCGACTTGTGAGGGAAAAA+AGG | + | tig0033666:10531-10550 | None:intergenic | 50.0% | |
| TGCACTCCCCTTGAATATGG+TGG | - | tig0033666:10809-10828 | Msa1452110:five_prime_UTR | 50.0% | |
| ! | TTTGCCGCGCCGTCTTTTTG+TGG | - | tig0033666:8047-8066 | Msa1452110:intron | 55.0% |
| ATTTCAGCGCTGTGTGGTGC+GGG | - | tig0033666:10009-10028 | Msa1452110:intron | 55.0% | |
| GCACACGGATACCCCGACAA+AGG | + | tig0033666:6983-7002 | None:intergenic | 60.0% | |
| GAGGAGGTTTAGGGGTGAGG+GGG | + | tig0033666:8473-8492 | None:intergenic | 60.0% | |
| GGAGGAGGTTTAGGGGTGAG+GGG | + | tig0033666:8474-8493 | None:intergenic | 60.0% | |
| GGGAGGAGGTTTAGGGGTGA+GGG | + | tig0033666:8475-8494 | None:intergenic | 60.0% | |
| !! | GGAGTTTGCTGCCGGGAATG+TGG | - | tig0033666:8885-8904 | Msa1452110:intron | 60.0% |
| GGGGAGGAGGTTTAGGGGTG+AGG | + | tig0033666:8476-8495 | None:intergenic | 65.0% | |
| TGTGTGGTGCGGGCCTTGCA+AGG | - | tig0033666:10019-10038 | Msa1452110:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0033666 | gene | 6240 | 10835 | 6240 | ID=Msa1452110;Name=Msa1452110 |
| tig0033666 | mRNA | 6240 | 10835 | 6240 | ID=Msa1452110-mRNA-1;Parent=Msa1452110;Name=Msa1452110-mRNA-1;_AED=0.16;_eAED=0.16;_QI=343|0.8|0.83|1|0.8|0.66|6|340|163 |
| tig0033666 | exon | 6240 | 6732 | 6240 | ID=Msa1452110-mRNA-1:exon:18406;Parent=Msa1452110-mRNA-1 |
| tig0033666 | exon | 6954 | 7076 | 6954 | ID=Msa1452110-mRNA-1:exon:18405;Parent=Msa1452110-mRNA-1 |
| tig0033666 | exon | 8103 | 8225 | 8103 | ID=Msa1452110-mRNA-1:exon:18404;Parent=Msa1452110-mRNA-1 |
| tig0033666 | exon | 8324 | 8395 | 8324 | ID=Msa1452110-mRNA-1:exon:18403;Parent=Msa1452110-mRNA-1 |
| tig0033666 | exon | 9244 | 9347 | 9244 | ID=Msa1452110-mRNA-1:exon:18402;Parent=Msa1452110-mRNA-1 |
| tig0033666 | exon | 10576 | 10835 | 10576 | ID=Msa1452110-mRNA-1:exon:18401;Parent=Msa1452110-mRNA-1 |
| tig0033666 | five_prime_UTR | 10576 | 10835 | 10576 | ID=Msa1452110-mRNA-1:five_prime_utr;Parent=Msa1452110-mRNA-1 |
| tig0033666 | five_prime_UTR | 9265 | 9347 | 9265 | ID=Msa1452110-mRNA-1:five_prime_utr;Parent=Msa1452110-mRNA-1 |
| tig0033666 | CDS | 9244 | 9264 | 9244 | ID=Msa1452110-mRNA-1:cds;Parent=Msa1452110-mRNA-1 |
| tig0033666 | CDS | 8324 | 8395 | 8324 | ID=Msa1452110-mRNA-1:cds;Parent=Msa1452110-mRNA-1 |
| tig0033666 | CDS | 8103 | 8225 | 8103 | ID=Msa1452110-mRNA-1:cds;Parent=Msa1452110-mRNA-1 |
| tig0033666 | CDS | 6954 | 7076 | 6954 | ID=Msa1452110-mRNA-1:cds;Parent=Msa1452110-mRNA-1 |
| tig0033666 | CDS | 6580 | 6732 | 6580 | ID=Msa1452110-mRNA-1:cds;Parent=Msa1452110-mRNA-1 |
| tig0033666 | three_prime_UTR | 6240 | 6579 | 6240 | ID=Msa1452110-mRNA-1:three_prime_utr;Parent=Msa1452110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
