Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1154180 | XP_024627207.1 | 85.276 | 163 | 0 | 1 | 1 | 163 | 1 | 139 | 5.94e-93 | 276 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1154180 | sp|Q9C9Y6|TRXH9_ARATH | 71.875 | 128 | 36 | 0 | 36 | 163 | 11 | 138 | 4.93e-68 | 206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1154180 | D8L5E3 | 85.276 | 163 | 0 | 1 | 1 | 163 | 1 | 139 | 2.84e-93 | 276 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1026780 | Msa1154180 | 0.933424 | 1.917513e-95 | -8.615850e-47 |
| Msa1026810 | Msa1154180 | 0.909581 | 4.861617e-82 | -8.615850e-47 |
| Msa1154180 | Msa1452110 | 0.901783 | 1.889988e-78 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1154180 | MtrunA17_Chr7g0245141 | 85.276 | 163 | 0 | 1 | 1 | 163 | 1 | 139 | 5.46e-97 | 276 |
| Msa1154180 | MtrunA17_Chr8g0334481 | 65.584 | 154 | 31 | 1 | 1 | 154 | 1 | 132 | 2.71e-72 | 213 |
| Msa1154180 | MtrunA17_Chr1g0155721 | 39.091 | 110 | 67 | 0 | 48 | 157 | 6 | 115 | 2.18e-29 | 104 |
| Msa1154180 | MtrunA17_Chr3g0142051 | 44.554 | 101 | 56 | 0 | 48 | 148 | 6 | 106 | 3.47e-29 | 103 |
| Msa1154180 | MtrunA17_Chr5g0404831 | 43.269 | 104 | 59 | 0 | 48 | 151 | 8 | 111 | 4.65e-29 | 103 |
| Msa1154180 | MtrunA17_Chr8g0393201 | 36.066 | 122 | 78 | 0 | 30 | 151 | 209 | 330 | 1.43e-27 | 105 |
| Msa1154180 | MtrunA17_Chr7g0216481 | 41.935 | 93 | 54 | 0 | 59 | 151 | 37 | 129 | 7.20e-25 | 93.2 |
| Msa1154180 | MtrunA17_Chr2g0280411 | 36.036 | 111 | 71 | 0 | 41 | 151 | 2 | 112 | 1.73e-23 | 89.4 |
| Msa1154180 | MtrunA17_Chr2g0319291 | 36.364 | 110 | 70 | 0 | 50 | 159 | 12 | 121 | 3.64e-23 | 88.6 |
| Msa1154180 | MtrunA17_Chr4g0042051 | 35.294 | 102 | 66 | 0 | 50 | 151 | 12 | 113 | 2.83e-21 | 84.0 |
| Msa1154180 | MtrunA17_Chr5g0415771 | 40.659 | 91 | 54 | 0 | 59 | 149 | 30 | 120 | 1.85e-17 | 73.9 |
| Msa1154180 | MtrunA17_Chr5g0415741 | 36.190 | 105 | 67 | 0 | 47 | 151 | 17 | 121 | 1.56e-16 | 71.6 |
| Msa1154180 | MtrunA17_Chr7g0264661 | 29.126 | 103 | 71 | 1 | 49 | 151 | 24 | 124 | 6.57e-16 | 70.1 |
| Msa1154180 | MtrunA17_Chr4g0052481 | 30.928 | 97 | 65 | 1 | 53 | 147 | 64 | 160 | 7.09e-16 | 70.9 |
| Msa1154180 | MtrunA17_Chr5g0415761 | 35.922 | 103 | 66 | 0 | 47 | 149 | 19 | 121 | 1.54e-15 | 68.9 |
| Msa1154180 | MtrunA17_Chr7g0249461 | 39.744 | 78 | 46 | 1 | 71 | 147 | 99 | 176 | 8.35e-12 | 60.5 |
| Msa1154180 | MtrunA17_Chr3g0125821 | 33.803 | 71 | 46 | 1 | 73 | 142 | 89 | 159 | 6.09e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1154180 | AT3G08710.2 | 71.875 | 128 | 36 | 0 | 36 | 163 | 11 | 138 | 5.01e-69 | 206 |
| Msa1154180 | AT3G08710.3 | 71.875 | 128 | 36 | 0 | 36 | 163 | 11 | 138 | 5.01e-69 | 206 |
| Msa1154180 | AT3G08710.1 | 71.875 | 128 | 36 | 0 | 36 | 163 | 11 | 138 | 5.01e-69 | 206 |
| Msa1154180 | AT3G56420.1 | 51.376 | 109 | 53 | 0 | 48 | 156 | 40 | 148 | 1.16e-37 | 127 |
| Msa1154180 | AT3G56420.2 | 51.376 | 109 | 53 | 0 | 48 | 156 | 40 | 148 | 1.16e-37 | 127 |
| Msa1154180 | AT3G56420.3 | 51.376 | 109 | 53 | 0 | 48 | 156 | 40 | 148 | 1.16e-37 | 127 |
| Msa1154180 | AT2G40790.2 | 49.107 | 112 | 57 | 0 | 45 | 156 | 37 | 148 | 1.85e-36 | 124 |
| Msa1154180 | AT2G40790.1 | 49.107 | 112 | 57 | 0 | 45 | 156 | 37 | 148 | 1.85e-36 | 124 |
| Msa1154180 | AT3G51030.1 | 43.269 | 104 | 59 | 0 | 48 | 151 | 6 | 109 | 2.67e-30 | 106 |
| Msa1154180 | AT1G45145.1 | 40.000 | 105 | 63 | 0 | 48 | 152 | 5 | 109 | 2.93e-28 | 101 |
| Msa1154180 | AT1G19730.1 | 41.509 | 106 | 61 | 1 | 48 | 152 | 6 | 111 | 1.54e-26 | 97.4 |
| Msa1154180 | AT1G11530.1 | 38.462 | 104 | 64 | 0 | 48 | 151 | 2 | 105 | 2.21e-24 | 92.0 |
| Msa1154180 | AT5G39950.1 | 37.755 | 98 | 61 | 0 | 54 | 151 | 31 | 128 | 4.68e-24 | 91.7 |
| Msa1154180 | AT5G42980.1 | 38.235 | 102 | 63 | 0 | 46 | 147 | 3 | 104 | 8.08e-24 | 90.5 |
| Msa1154180 | AT3G17880.2 | 34.752 | 141 | 88 | 2 | 21 | 157 | 232 | 372 | 9.16e-24 | 95.9 |
| Msa1154180 | AT3G17880.1 | 34.752 | 141 | 88 | 2 | 21 | 157 | 239 | 379 | 1.18e-23 | 95.5 |
| Msa1154180 | AT1G59730.1 | 37.500 | 104 | 65 | 0 | 48 | 151 | 21 | 124 | 1.99e-23 | 89.7 |
| Msa1154180 | AT1G69880.1 | 35.354 | 99 | 64 | 0 | 53 | 151 | 42 | 140 | 2.89e-18 | 77.0 |
| Msa1154180 | AT3G53220.1 | 30.769 | 104 | 70 | 1 | 48 | 151 | 21 | 122 | 4.01e-16 | 70.9 |
| Msa1154180 | AT5G16400.1 | 33.088 | 136 | 83 | 4 | 17 | 147 | 43 | 175 | 2.11e-14 | 67.8 |
| Msa1154180 | AT2G35010.2 | 30.693 | 101 | 68 | 1 | 50 | 148 | 86 | 186 | 3.28e-13 | 64.7 |
| Msa1154180 | AT2G35010.1 | 30.693 | 101 | 68 | 1 | 50 | 148 | 86 | 186 | 3.28e-13 | 64.7 |
| Msa1154180 | AT3G02730.1 | 38.462 | 78 | 47 | 1 | 71 | 147 | 88 | 165 | 1.72e-11 | 59.7 |
| Msa1154180 | AT1G31020.1 | 29.358 | 109 | 72 | 2 | 45 | 148 | 43 | 151 | 3.96e-11 | 58.5 |
Find 65 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGGCTTTCAAATATTTAAA+TGG | 0.192746 | 7_4:-41532269 | Msa1154180:exon |
| TCTTTGCTTCTTCCAACTTT+TGG | 0.218358 | 7_4:+41531123 | None:intergenic |
| TTTCTGTTCTTAACCACTTT+TGG | 0.240630 | 7_4:-41531364 | Msa1154180:CDS |
| CTTCTCAAGCTCTGGCTTGT+TGG | 0.253102 | 7_4:+41529629 | None:intergenic |
| GGAATTTGTTCTGCTGAAAT+AGG | 0.269571 | 7_4:-41532333 | Msa1154180:five_prime_UTR |
| TTCTGCACTCCCCTTGAATA+TGG | 0.274707 | 7_4:-41529247 | Msa1154180:three_prime_UTR |
| AATTGTGTTTAAACAAGTTT+TGG | 0.293868 | 7_4:+41533820 | None:intergenic |
| CGGCTTTCAAATATTTAAAT+GGG | 0.329455 | 7_4:-41532268 | Msa1154180:exon |
| TCAGACATCTCGCAGTAATA+TGG | 0.336837 | 7_4:+41530007 | None:intergenic |
| ATTCATGTTTGTTGATGCTT+CGG | 0.368552 | 7_4:-41529552 | Msa1154180:three_prime_UTR |
| GGTAATAAGTGCCACATTCC+CGG | 0.372882 | 7_4:+41531163 | None:intergenic |
| ACTTTCTTCTTTCTTAAAGA+TGG | 0.380390 | 7_4:-41529678 | Msa1154180:CDS |
| GTTCATCCACATCAACTAAT+AGG | 0.380538 | 7_4:+41529963 | None:intergenic |
| CAACAACTTGACAAACTTGT+TGG | 0.404290 | 7_4:-41529654 | Msa1154180:CDS |
| AAAGAAAACTTACCGATTTG+AGG | 0.407940 | 7_4:+41533573 | None:intergenic |
| TGCAGGACTTCAGCACTTCA+TGG | 0.415805 | 7_4:-41529719 | Msa1154180:intron |
| TCCTTTCCGTATACCAAAAG+TGG | 0.430289 | 7_4:+41531351 | None:intergenic |
| TATTTAAATGGGGAATTGCT+TGG | 0.430735 | 7_4:-41532257 | Msa1154180:exon |
| ACAAGCTTCTTCTCAAGCTC+TGG | 0.435251 | 7_4:+41529621 | None:intergenic |
| CTTTCTGTTTCACCTCAAAT+CGG | 0.437943 | 7_4:-41533585 | Msa1154180:intron |
| ATTTCAGCGCTGTGTGGTGC+GGG | 0.443661 | 7_4:-41530048 | Msa1154180:CDS |
| CAATAGACTTATGATTTAAG+TGG | 0.466278 | 7_4:-41529301 | Msa1154180:three_prime_UTR |
| TTGGTCCCAAGCTTCTTTGG+TGG | 0.470738 | 7_4:+41531142 | None:intergenic |
| AATGGGGAATTGCTTGGCTA+AGG | 0.472308 | 7_4:-41532251 | Msa1154180:intron |
| AAATGTAACCACCATATTCA+AGG | 0.472327 | 7_4:+41529236 | None:intergenic |
| AATGCTTGTAGTCTCGGGAT+AGG | 0.474668 | 7_4:-41531220 | Msa1154180:intron |
| TGTGTGGTGCGGGCCTTGCA+AGG | 0.481266 | 7_4:-41530038 | Msa1154180:CDS |
| TCTTTAAGAAAGAAGAAAGT+TGG | 0.487293 | 7_4:+41529681 | None:intergenic |
| TATTACCACCAAAGAAGCTT+GGG | 0.487323 | 7_4:-41531147 | Msa1154180:CDS |
| CATTAAAGTTTACAAGTTAG+CGG | 0.487533 | 7_4:-41532288 | Msa1154180:five_prime_UTR |
| GAGAAGATAAAGTAGTATTG+TGG | 0.497839 | 7_4:+41533673 | None:intergenic |
| AATACAGTGGACCTCGTGCT+TGG | 0.502036 | 7_4:+41533646 | None:intergenic |
| AAAACAAGGAATAATAGAAA+AGG | 0.508546 | 7_4:-41531329 | Msa1154180:intron |
| ATGCTTGTAGTCTCGGGATA+GGG | 0.508948 | 7_4:-41531219 | Msa1154180:intron |
| AGAAGCTTGGGACCAAAAGT+TGG | 0.512115 | 7_4:-41531135 | Msa1154180:CDS |
| GCAGGACTTCAGCACTTCAT+GGG | 0.516790 | 7_4:-41529718 | Msa1154180:intron |
| AAAGTTGGAAGAAGCAAAGA+AGG | 0.520011 | 7_4:-41531120 | Msa1154180:CDS |
| AATTTCAGCGCTGTGTGGTG+CGG | 0.527326 | 7_4:-41530049 | Msa1154180:CDS |
| CAAGAATTCGCGACTTGTGA+GGG | 0.529543 | 7_4:+41529521 | None:intergenic |
| TTATTACCACCAAAGAAGCT+TGG | 0.535851 | 7_4:-41531148 | Msa1154180:CDS |
| TGCACTCCCCTTGAATATGG+TGG | 0.537234 | 7_4:-41529244 | Msa1154180:three_prime_UTR |
| CAACATGTGGAGTTTGCTGC+CGG | 0.540698 | 7_4:-41531182 | Msa1154180:CDS |
| AATGTAACCACCATATTCAA+GGG | 0.540798 | 7_4:+41529237 | None:intergenic |
| TATGGTGCAATCACCTTGCA+AGG | 0.556546 | 7_4:+41530025 | None:intergenic |
| AACATGTGGAGTTTGCTGCC+GGG | 0.559586 | 7_4:-41531181 | Msa1154180:CDS |
| GATGTTCCTATTAGTTGATG+TGG | 0.576876 | 7_4:-41529969 | Msa1154180:CDS |
| AAGAAAGAAGAAAGTTGGTG+TGG | 0.580578 | 7_4:+41529686 | None:intergenic |
| GGCTTTCAAATATTTAAATG+GGG | 0.589008 | 7_4:-41532267 | Msa1154180:exon |
| GGAGTTTGCTGCCGGGAATG+TGG | 0.597443 | 7_4:-41531174 | Msa1154180:CDS |
| TAACAATAATAATTGTGTTG+TGG | 0.604307 | 7_4:+41533706 | None:intergenic |
| GTTTAGAAGCACTCATGTCA+TGG | 0.605192 | 7_4:+41529497 | None:intergenic |
| TGAAATAGGCGGTCTTTCGT+CGG | 0.607226 | 7_4:-41532319 | Msa1154180:five_prime_UTR |
| TCAAGAATTCGCGACTTGTG+AGG | 0.608567 | 7_4:+41529520 | None:intergenic |
| TTGGAAGAAGCAAAGAAGGA+TGG | 0.617820 | 7_4:-41531116 | Msa1154180:CDS |
| ATTGTGAAAGTAGAGACAGA+AGG | 0.622029 | 7_4:+41533618 | None:intergenic |
| AAATAATTCAAAGACACTCA+CGG | 0.623663 | 7_4:+41529468 | None:intergenic |
| CTGAGGAACTGAATCAGCAA+TGG | 0.626817 | 7_4:+41529596 | None:intergenic |
| ACAAGTCACTGCTTATTCTG+AGG | 0.628145 | 7_4:+41529579 | None:intergenic |
| TCTTCTCTTCTCCAAGCACG+AGG | 0.632107 | 7_4:-41533657 | Msa1154180:five_prime_UTR |
| ATTTGTTCTGCTGAAATAGG+CGG | 0.639737 | 7_4:-41532330 | Msa1154180:five_prime_UTR |
| GGTATACGGAAAGGAAAACA+AGG | 0.648844 | 7_4:-41531343 | Msa1154180:CDS |
| CAATGATTCTGATCAACATG+TGG | 0.654075 | 7_4:-41531195 | Msa1154180:CDS |
| ATGTAACCACCATATTCAAG+GGG | 0.655718 | 7_4:+41529238 | None:intergenic |
| ACAGAAGGATACAAATACAG+TGG | 0.686734 | 7_4:+41533633 | None:intergenic |
| TTGCAAATTTCAGCGCTGTG+TGG | 0.691109 | 7_4:-41530054 | Msa1154180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTATTTATTTTTTGATG+GGG | - | chr7_4:41529597-41529616 | Msa1154180:CDS | 10.0% |
| !!! | CTTTTCAATTAAATAATTTA+TGG | + | chr7_4:41532400-41532419 | None:intergenic | 10.0% |
| !!! | TATACATTTTAATCAAATAT+GGG | + | chr7_4:41532872-41532891 | None:intergenic | 10.0% |
| !!! | TTATACATTTTAATCAAATA+TGG | + | chr7_4:41532873-41532892 | None:intergenic | 10.0% |
| !!! | TGTTTTTTTTACTGAAAAAT+AGG | + | chr7_4:41529312-41529331 | None:intergenic | 15.0% |
| !! | AAAGTAAATAAATTCCAAAT+GGG | + | chr7_4:41529793-41529812 | None:intergenic | 15.0% |
| !!! | CTTTATTTTATCTTTTGTTA+AGG | - | chr7_4:41532694-41532713 | Msa1154180:intron | 15.0% |
| !!! | GCTATATAATTTATTTTCTT+TGG | - | chr7_4:41532950-41532969 | Msa1154180:intron | 15.0% |
| !! | ATTATCATATATCAAATCTT+TGG | - | chr7_4:41533255-41533274 | Msa1154180:intron | 15.0% |
| !!! | TTTGAATTATTTTTTTTCCT+TGG | - | chr7_4:41533609-41533628 | Msa1154180:five_prime_UTR | 15.0% |
| !!! | AATTGTGTTTAAACAAGTTT+TGG | + | chr7_4:41529249-41529268 | None:intergenic | 20.0% |
| !! | TAACAATAATAATTGTGTTG+TGG | + | chr7_4:41529363-41529382 | None:intergenic | 20.0% |
| !! | GAAAATCAAATTGAAAACTA+AGG | + | chr7_4:41529566-41529585 | None:intergenic | 20.0% |
| !! | AAGTAAATAAATTCCAAATG+GGG | + | chr7_4:41529792-41529811 | None:intergenic | 20.0% |
| !! | CAAAGTAAATAAATTCCAAA+TGG | + | chr7_4:41529794-41529813 | None:intergenic | 20.0% |
| !! | AGGAAATAATTTCTGATATA+TGG | - | chr7_4:41530537-41530556 | Msa1154180:intron | 20.0% |
| !! | ATATAATATCTCTATTGTTC+TGG | - | chr7_4:41530700-41530719 | Msa1154180:intron | 20.0% |
| !! | TCATTAAAAGTTAAAGTTTG+AGG | - | chr7_4:41530882-41530901 | Msa1154180:intron | 20.0% |
| !! | TGTAAAAGTTAATCTCTATT+TGG | + | chr7_4:41531102-41531121 | None:intergenic | 20.0% |
| !! | AAAACAAGGAATAATAGAAA+AGG | - | chr7_4:41531737-41531756 | Msa1154180:intron | 20.0% |
| !! | CTCAGTAAAGATTTATATTA+AGG | - | chr7_4:41532373-41532392 | Msa1154180:intron | 20.0% |
| !! | TAAAAAGTAAGATAGAGTTA+AGG | + | chr7_4:41532929-41532948 | None:intergenic | 20.0% |
| !!! | ATGTTTTATATTTACATCCA+AGG | + | chr7_4:41533629-41533648 | None:intergenic | 20.0% |
| ! | TGATCACAAATCCAAATATT+GGG | - | chr7_4:41529753-41529772 | Msa1154180:intron | 25.0% |
| ! | CATTAAAAACTCCCAATATT+TGG | + | chr7_4:41529767-41529786 | None:intergenic | 25.0% |
| ! | TTGTGTTATGTTATGTCTTA+AGG | - | chr7_4:41529834-41529853 | Msa1154180:intron | 25.0% |
| !! | TTATGTCTTAAGGTATTCTT+TGG | - | chr7_4:41529844-41529863 | Msa1154180:intron | 25.0% |
| ! | ATTTGTCTTAATTAACCATC+TGG | - | chr7_4:41529883-41529902 | Msa1154180:intron | 25.0% |
| !! | TTTTTCGTTTTCCTTTTTTC+CGG | + | chr7_4:41530151-41530170 | None:intergenic | 25.0% |
| ! | AAATAAAAATCATTCCGAAC+CGG | + | chr7_4:41530349-41530368 | None:intergenic | 25.0% |
| !!! | TTGTTTTTTGAGTCTTTAAC+TGG | - | chr7_4:41530430-41530449 | Msa1154180:intron | 25.0% |
| ! | CATTAAAGTTTACAAGTTAG+CGG | - | chr7_4:41530778-41530797 | Msa1154180:intron | 25.0% |
| ! | CGGCTTTCAAATATTTAAAT+GGG | - | chr7_4:41530798-41530817 | Msa1154180:intron | 25.0% |
| ! | GGCTTTCAAATATTTAAATG+GGG | - | chr7_4:41530799-41530818 | Msa1154180:intron | 25.0% |
| ! | GTGGCAAAAACTTATTTATT+TGG | - | chr7_4:41531073-41531092 | Msa1154180:intron | 25.0% |
| !! | TAGAAAGGACAGATTATTTT+AGG | - | chr7_4:41531251-41531270 | Msa1154180:intron | 25.0% |
| !!! | AGAAAGGACAGATTATTTTA+GGG | - | chr7_4:41531252-41531271 | Msa1154180:intron | 25.0% |
| ! | TATCACCATTAAAAGATGAA+GGG | + | chr7_4:41531503-41531522 | None:intergenic | 25.0% |
| ! | TTATCACCATTAAAAGATGA+AGG | + | chr7_4:41531504-41531523 | None:intergenic | 25.0% |
| !! | CATCTTTTAATGGTGATAAA+CGG | - | chr7_4:41531505-41531524 | Msa1154180:intron | 25.0% |
| !! | TTACTTCTAGTTACAGATTA+GGG | + | chr7_4:41531654-41531673 | None:intergenic | 25.0% |
| !! | ATTACTTCTAGTTACAGATT+AGG | + | chr7_4:41531655-41531674 | None:intergenic | 25.0% |
| ! | TGAACTGCATATTAAAAAGT+AGG | + | chr7_4:41531999-41532018 | None:intergenic | 25.0% |
| ! | ATGCAGTTCAATAAAATTGA+AGG | - | chr7_4:41532009-41532028 | Msa1154180:intron | 25.0% |
| ! | ACATTTGTATACTTGGTATT+CGG | - | chr7_4:41532093-41532112 | Msa1154180:intron | 25.0% |
| ! | AAAAATTCCTAACGAGATTA+TGG | + | chr7_4:41532142-41532161 | None:intergenic | 25.0% |
| !!! | TAATCTCGTTAGGAATTTTT+TGG | - | chr7_4:41532142-41532161 | Msa1154180:intron | 25.0% |
| !! | TTAGCTTATCTAGATTTTAC+TGG | - | chr7_4:41532539-41532558 | Msa1154180:intron | 25.0% |
| ! | ATATTGTTTGGTATAGCTTA+TGG | - | chr7_4:41532576-41532595 | Msa1154180:intron | 25.0% |
| ! | AATAAGCTGGAAAAAACTTA+TGG | + | chr7_4:41532620-41532639 | None:intergenic | 25.0% |
| !! | ATCTTTGGCTTATATACTTT+AGG | - | chr7_4:41533270-41533289 | Msa1154180:intron | 25.0% |
| !! | TCTTTAAGAAAGAAGAAAGT+TGG | + | chr7_4:41533388-41533407 | None:intergenic | 25.0% |
| ! | ACTTTCTTCTTTCTTAAAGA+TGG | - | chr7_4:41533388-41533407 | Msa1154180:intron | 25.0% |
| ! | AAATAATTCAAAGACACTCA+CGG | + | chr7_4:41533601-41533620 | None:intergenic | 25.0% |
| ! | ATTGTCTAAGTAAGAAAAAG+TGG | - | chr7_4:41533728-41533747 | Msa1154180:five_prime_UTR | 25.0% |
| ! | CAATAGACTTATGATTTAAG+TGG | - | chr7_4:41533765-41533784 | Msa1154180:five_prime_UTR | 25.0% |
| GAGAAGATAAAGTAGTATTG+TGG | + | chr7_4:41529396-41529415 | None:intergenic | 30.0% | |
| !! | AAAGAAAACTTACCGATTTG+AGG | + | chr7_4:41529496-41529515 | None:intergenic | 30.0% |
| AATTGAAAACTAAGGTGTGA+GGG | + | chr7_4:41529558-41529577 | None:intergenic | 30.0% | |
| AAATTGAAAACTAAGGTGTG+AGG | + | chr7_4:41529559-41529578 | None:intergenic | 30.0% | |
| TGAGAAACAAGAAAGGAAAA+AGG | + | chr7_4:41529724-41529743 | None:intergenic | 30.0% | |
| CTGATCACAAATCCAAATAT+TGG | - | chr7_4:41529752-41529771 | Msa1154180:intron | 30.0% | |
| ! | AGTTTTTAATGTACCCCATT+TGG | - | chr7_4:41529776-41529795 | Msa1154180:intron | 30.0% |
| AATTAACCATCTGGTTACTA+AGG | - | chr7_4:41529892-41529911 | Msa1154180:intron | 30.0% | |
| ATTAACCATCTGGTTACTAA+GGG | - | chr7_4:41529893-41529912 | Msa1154180:intron | 30.0% | |
| AGGGTTAAAGATTGTTTCAA+CGG | - | chr7_4:41529960-41529979 | Msa1154180:CDS | 30.0% | |
| ! | TTATTTCTCAAACTTGCACA+CGG | + | chr7_4:41530003-41530022 | None:intergenic | 30.0% |
| !! | TGTACAGATAGTTGTTGTTT+AGG | - | chr7_4:41530054-41530073 | Msa1154180:CDS | 30.0% |
| !! | GTACAGATAGTTGTTGTTTA+GGG | - | chr7_4:41530055-41530074 | Msa1154180:CDS | 30.0% |
| ! | TTTTCGTTTTCCTTTTTTCC+GGG | + | chr7_4:41530150-41530169 | None:intergenic | 30.0% |
| TGGATAAACTTCTCAAGAAA+CGG | + | chr7_4:41530324-41530343 | None:intergenic | 30.0% | |
| TTCCTTACATACATTTCTGA+AGG | + | chr7_4:41530522-41530541 | None:intergenic | 30.0% | |
| ATGGCTAAGTGAACATTTAT+TGG | - | chr7_4:41530556-41530575 | Msa1154180:intron | 30.0% | |
| TAATATCTCTATTGTTCTGG+TGG | - | chr7_4:41530703-41530722 | Msa1154180:intron | 30.0% | |
| GCGGCTTTCAAATATTTAAA+TGG | - | chr7_4:41530797-41530816 | Msa1154180:intron | 30.0% | |
| TATTTAAATGGGGAATTGCT+TGG | - | chr7_4:41530809-41530828 | Msa1154180:intron | 30.0% | |
| TTGGCTAAGGTAAGAATATT+TGG | - | chr7_4:41530828-41530847 | Msa1154180:intron | 30.0% | |
| ! | TACAATTTATCAGAGAGTAC+AGG | + | chr7_4:41530915-41530934 | None:intergenic | 30.0% |
| TAAGATCACTCTATAAGCAA+AGG | - | chr7_4:41530939-41530958 | Msa1154180:intron | 30.0% | |
| ! | AAGTTTTTGCCACAAAAAGA+CGG | + | chr7_4:41531066-41531085 | None:intergenic | 30.0% |
| ! | CTGTTTAATTTATCTGCTAC+TGG | + | chr7_4:41531161-41531180 | None:intergenic | 30.0% |
| GAAACTAATGAAAGCTATGT+AGG | - | chr7_4:41531225-41531244 | Msa1154180:intron | 30.0% | |
| AAGCTATGTAGGTATTAGAA+AGG | - | chr7_4:41531236-41531255 | Msa1154180:intron | 30.0% | |
| ATCACCATTAAAAGATGAAG+GGG | + | chr7_4:41531502-41531521 | None:intergenic | 30.0% | |
| ATCAGTTATGAGAAGGAATA+TGG | + | chr7_4:41531578-41531597 | None:intergenic | 30.0% | |
| ! | CTGAATTAATACGTTTTCAC+AGG | + | chr7_4:41531617-41531636 | None:intergenic | 30.0% |
| AACAGAAAAATCACAGATAG+AGG | + | chr7_4:41531690-41531709 | None:intergenic | 30.0% | |
| ! | TTTCTGTTCTTAACCACTTT+TGG | - | chr7_4:41531702-41531721 | Msa1154180:intron | 30.0% |
| !! | TCTTAACCACTTTTGGTATA+CGG | - | chr7_4:41531709-41531728 | Msa1154180:intron | 30.0% |
| ! | GAATAATAGAAAAGGTGTGT+AGG | - | chr7_4:41531745-41531764 | Msa1154180:intron | 30.0% |
| ! | GTTTTTAATGCTTGTAGTCT+CGG | - | chr7_4:41531840-41531859 | Msa1154180:intron | 30.0% |
| ! | TTTTTAATGCTTGTAGTCTC+GGG | - | chr7_4:41531841-41531860 | Msa1154180:intron | 30.0% |
| ATACCAAGTATACAAATGTG+CGG | + | chr7_4:41532092-41532111 | None:intergenic | 30.0% | |
| ! | ATCTAGATTTTACTGGCATA+AGG | - | chr7_4:41532546-41532565 | Msa1154180:intron | 30.0% |
| TAAGGACATGCAATATTGTT+TGG | - | chr7_4:41532564-41532583 | Msa1154180:intron | 30.0% | |
| GTAAACTGTTTATCCAAACA+AGG | - | chr7_4:41532772-41532791 | Msa1154180:intron | 30.0% | |
| ACTAGCAATTACTGCTAATA+TGG | + | chr7_4:41532798-41532817 | None:intergenic | 30.0% | |
| GAGTTAAGGAAAATATATGC+TGG | + | chr7_4:41532915-41532934 | None:intergenic | 30.0% | |
| TTGCCACATGACATATTTAA+GGG | + | chr7_4:41533298-41533317 | None:intergenic | 30.0% | |
| ! | ATTCATGTTTGTTGATGCTT+CGG | - | chr7_4:41533514-41533533 | Msa1154180:intron | 30.0% |
| ACAGAAGGATACAAATACAG+TGG | + | chr7_4:41529436-41529455 | None:intergenic | 35.0% | |
| ATTGTGAAAGTAGAGACAGA+AGG | + | chr7_4:41529451-41529470 | None:intergenic | 35.0% | |
| CTTTCTGTTTCACCTCAAAT+CGG | - | chr7_4:41529481-41529500 | Msa1154180:three_prime_UTR | 35.0% | |
| TACTGGTGCTTGAATAAAAG+AGG | + | chr7_4:41529527-41529546 | None:intergenic | 35.0% | |
| GATGGGGTTGTTTATATTGA+TGG | - | chr7_4:41529613-41529632 | Msa1154180:CDS | 35.0% | |
| AAACTGCTGAGAAACAAGAA+AGG | + | chr7_4:41529731-41529750 | None:intergenic | 35.0% | |
| TGTCGAGAGGTAATAAAGTA+GGG | - | chr7_4:41529941-41529960 | Msa1154180:intron | 35.0% | |
| AACGACAAAAGAATCAACTG+CGG | - | chr7_4:41530169-41530188 | Msa1154180:intron | 35.0% | |
| TCATATCAGGCATTTACTGT+TGG | + | chr7_4:41530218-41530237 | None:intergenic | 35.0% | |
| AGTAAATGCCTGATATGAGT+CGG | - | chr7_4:41530220-41530239 | Msa1154180:intron | 35.0% | |
| CTTGAGAAGTTTATCCAATC+CGG | - | chr7_4:41530327-41530346 | Msa1154180:intron | 35.0% | |
| CACCTTCAGAAATGTATGTA+AGG | - | chr7_4:41530517-41530536 | Msa1154180:intron | 35.0% | |
| TATTGTTCTGGTGGAATTCA+GGG | - | chr7_4:41530712-41530731 | Msa1154180:intron | 35.0% | |
| ! | GGAATTTGTTCTGCTGAAAT+AGG | - | chr7_4:41530733-41530752 | Msa1154180:intron | 35.0% |
| ATTTGTTCTGCTGAAATAGG+CGG | - | chr7_4:41530736-41530755 | Msa1154180:intron | 35.0% | |
| ! | GTCAAACATGCTATTTACTG+TGG | - | chr7_4:41530855-41530874 | Msa1154180:intron | 35.0% |
| ! | TATCAGAGAGTACAGGATAA+AGG | + | chr7_4:41530908-41530927 | None:intergenic | 35.0% |
| !! | TTATGCGTTGATTCTACCAA+AGG | + | chr7_4:41530998-41531017 | None:intergenic | 35.0% |
| TTTGGTAGAATCAACGCATA+AGG | - | chr7_4:41530997-41531016 | Msa1154180:intron | 35.0% | |
| CTCAGATGAATTAGAACAAC+TGG | + | chr7_4:41531281-41531300 | None:intergenic | 35.0% | |
| GTTATGAGAAGGAATATGGA+TGG | + | chr7_4:41531574-41531593 | None:intergenic | 35.0% | |
| CTGCAATATCAGTTATGAGA+AGG | + | chr7_4:41531585-41531604 | None:intergenic | 35.0% | |
| CAATGATTCTGATCAACATG+TGG | - | chr7_4:41531871-41531890 | Msa1154180:intron | 35.0% | |
| TTATTACCACCAAAGAAGCT+TGG | - | chr7_4:41531918-41531937 | Msa1154180:intron | 35.0% | |
| TATTACCACCAAAGAAGCTT+GGG | - | chr7_4:41531919-41531938 | Msa1154180:intron | 35.0% | |
| ! | TCTTTGCTTCTTCCAACTTT+TGG | + | chr7_4:41531946-41531965 | None:intergenic | 35.0% |
| AAAGTTGGAAGAAGCAAAGA+AGG | - | chr7_4:41531946-41531965 | Msa1154180:intron | 35.0% | |
| AGCAAAACAACACAGCAAAA+TGG | + | chr7_4:41532042-41532061 | None:intergenic | 35.0% | |
| TTACCGCACATTTGTATACT+TGG | - | chr7_4:41532086-41532105 | Msa1154180:intron | 35.0% | |
| AATTCCTAACGAGATTATGG+CGG | + | chr7_4:41532139-41532158 | None:intergenic | 35.0% | |
| !!! | TCTCGTTAGGAATTTTTTGG+CGG | - | chr7_4:41532145-41532164 | Msa1154180:intron | 35.0% |
| CCAAAAAAAAACAGAGACAC+TGG | + | chr7_4:41532455-41532474 | None:intergenic | 35.0% | |
| !!! | CCAGTGTCTCTGTTTTTTTT+TGG | - | chr7_4:41532452-41532471 | Msa1154180:intron | 35.0% |
| ! | GATGTTCCTATTAGTTGATG+TGG | - | chr7_4:41533097-41533116 | Msa1154180:intron | 35.0% |
| GTTCATCCACATCAACTAAT+AGG | + | chr7_4:41533106-41533125 | None:intergenic | 35.0% | |
| TGTTTGTCCCCCATATTTAA+GGG | + | chr7_4:41533218-41533237 | None:intergenic | 35.0% | |
| ATGTTTGTCCCCCATATTTA+AGG | + | chr7_4:41533219-41533238 | None:intergenic | 35.0% | |
| TGCCACATGACATATTTAAG+GGG | + | chr7_4:41533297-41533316 | None:intergenic | 35.0% | |
| GTTGCCACATGACATATTTA+AGG | + | chr7_4:41533299-41533318 | None:intergenic | 35.0% | |
| GCAACACATTTGATTGAACA+TGG | - | chr7_4:41533314-41533333 | Msa1154180:intron | 35.0% | |
| !! | AAGAAAGAAGAAAGTTGGTG+TGG | + | chr7_4:41533383-41533402 | None:intergenic | 35.0% |
| CAACAACTTGACAAACTTGT+TGG | - | chr7_4:41533412-41533431 | Msa1154180:intron | 35.0% | |
| GTCTAAGTAAGAAAAAGTGG+TGG | - | chr7_4:41533731-41533750 | Msa1154180:five_prime_UTR | 35.0% | |
| AAGAAAAAGTGGTGGTTACA+TGG | - | chr7_4:41533739-41533758 | Msa1154180:five_prime_UTR | 35.0% | |
| TCTTTCCCTTAGTAACCAGA+TGG | + | chr7_4:41529901-41529920 | None:intergenic | 40.0% | |
| ATCTGGTTACTAAGGGAAAG+AGG | - | chr7_4:41529900-41529919 | Msa1154180:intron | 40.0% | |
| GTGTCGAGAGGTAATAAAGT+AGG | - | chr7_4:41529940-41529959 | Msa1154180:intron | 40.0% | |
| TGTTTCAACGGTTCCTTTGT+CGG | - | chr7_4:41529972-41529991 | Msa1154180:CDS | 40.0% | |
| CTTTATTCGTAACCTAAGCC+CGG | - | chr7_4:41530129-41530148 | Msa1154180:intron | 40.0% | |
| ! | TTTTCCTTTTTTCCGGGCTT+AGG | + | chr7_4:41530144-41530163 | None:intergenic | 40.0% |
| ACGACAAAAGAATCAACTGC+GGG | - | chr7_4:41530170-41530189 | Msa1154180:intron | 40.0% | |
| TATCAGGCATTTACTGTTGG+CGG | + | chr7_4:41530215-41530234 | None:intergenic | 40.0% | |
| GCATATGTGTTAGCCAATCT+CGG | + | chr7_4:41530285-41530304 | None:intergenic | 40.0% | |
| GAAGTTTATCCAATCCGGTT+CGG | - | chr7_4:41530332-41530351 | Msa1154180:intron | 40.0% | |
| AAAATCATTCCGAACCGGAT+TGG | + | chr7_4:41530344-41530363 | None:intergenic | 40.0% | |
| ! | TGAAGGTGCAAAATCAAGCA+GGG | + | chr7_4:41530505-41530524 | None:intergenic | 40.0% |
| CATCATGAGCATAGAAGAAC+AGG | + | chr7_4:41530618-41530637 | None:intergenic | 40.0% | |
| CTATTGTTCTGGTGGAATTC+AGG | - | chr7_4:41530711-41530730 | Msa1154180:intron | 40.0% | |
| TTTCCAAGTGTGTAGTGTGT+TGG | - | chr7_4:41530971-41530990 | Msa1154180:intron | 40.0% | |
| GCATACAACACAATACGCAA+AGG | + | chr7_4:41531136-41531155 | None:intergenic | 40.0% | |
| CAGTTCAAATTACACTGCCT+AGG | - | chr7_4:41531318-41531337 | Msa1154180:intron | 40.0% | |
| ! | ACTCTTTTCACGAGTTACCT+AGG | + | chr7_4:41531338-41531357 | None:intergenic | 40.0% |
| ATTAAAAGATGAAGGGGAGG+AGG | + | chr7_4:41531496-41531515 | None:intergenic | 40.0% | |
| ! | TCCTCCCCTTCATCTTTTAA+TGG | - | chr7_4:41531495-41531514 | Msa1154180:intron | 40.0% |
| ACCATTAAAAGATGAAGGGG+AGG | + | chr7_4:41531499-41531518 | None:intergenic | 40.0% | |
| !! | ACCACTTTTGGTATACGGAA+AGG | - | chr7_4:41531714-41531733 | Msa1154180:intron | 40.0% |
| TCCTTTCCGTATACCAAAAG+TGG | + | chr7_4:41531718-41531737 | None:intergenic | 40.0% | |
| GGTATACGGAAAGGAAAACA+AGG | - | chr7_4:41531723-41531742 | Msa1154180:intron | 40.0% | |
| TTGGAAGAAGCAAAGAAGGA+TGG | - | chr7_4:41531950-41531969 | Msa1154180:intron | 40.0% | |
| ATGTGCGGTAAATTCTAGCA+AGG | + | chr7_4:41532077-41532096 | None:intergenic | 40.0% | |
| AAAACCGCCATAATCTCGTT+AGG | - | chr7_4:41532132-41532151 | Msa1154180:intron | 40.0% | |
| CACATGACTTTGAGTCAGTT+TGG | - | chr7_4:41532201-41532220 | Msa1154180:intron | 40.0% | |
| AAGTTCTTTCGAGCTAGAAG+TGG | - | chr7_4:41532417-41532436 | Msa1154180:intron | 40.0% | |
| GCTAGAAGTGGATCTGAATT+AGG | - | chr7_4:41532429-41532448 | Msa1154180:intron | 40.0% | |
| ! | TTTTTCTTTGCCCGATCTAG+TGG | - | chr7_4:41532480-41532499 | Msa1154180:intron | 40.0% |
| TATCTACACCACCACTAGAT+CGG | + | chr7_4:41532494-41532513 | None:intergenic | 40.0% | |
| ! | TCTAGTGGTGGTGTAGATAT+AGG | - | chr7_4:41532495-41532514 | Msa1154180:intron | 40.0% |
| ! | CTAGTGGTGGTGTAGATATA+GGG | - | chr7_4:41532496-41532515 | Msa1154180:intron | 40.0% |
| GAGAGCTTATGGAAATAAGC+TGG | + | chr7_4:41532633-41532652 | None:intergenic | 40.0% | |
| CTTATTTCCATAAGCTCTCC+AGG | - | chr7_4:41532634-41532653 | Msa1154180:intron | 40.0% | |
| !! | ACTGCTAATATGGCCTTGTT+TGG | + | chr7_4:41532788-41532807 | None:intergenic | 40.0% |
| ACTAAAGCTCCTTGTTCAAC+AGG | - | chr7_4:41532986-41533005 | Msa1154180:intron | 40.0% | |
| TTGCAATCACCTGTTGAACA+AGG | + | chr7_4:41532998-41533017 | None:intergenic | 40.0% | |
| TCAGACATCTCGCAGTAATA+TGG | + | chr7_4:41533062-41533081 | None:intergenic | 40.0% | |
| ACTAGCACTCCCCTTAAATA+TGG | - | chr7_4:41533205-41533224 | Msa1154180:intron | 40.0% | |
| CTAGCACTCCCCTTAAATAT+GGG | - | chr7_4:41533206-41533225 | Msa1154180:intron | 40.0% | |
| TAGCACTCCCCTTAAATATG+GGG | - | chr7_4:41533207-41533226 | Msa1154180:intron | 40.0% | |
| GTTTGTCCCCCATATTTAAG+GGG | + | chr7_4:41533217-41533236 | None:intergenic | 40.0% | |
| GTCCCCTTAAATATGTCATG+TGG | - | chr7_4:41533292-41533311 | Msa1154180:intron | 40.0% | |
| AACATGGTTGTGTATGTTGC+AGG | - | chr7_4:41533330-41533349 | Msa1154180:intron | 40.0% | |
| ACAAGTCACTGCTTATTCTG+AGG | + | chr7_4:41533490-41533509 | None:intergenic | 40.0% | |
| !! | GTTTAGAAGCACTCATGTCA+TGG | + | chr7_4:41533572-41533591 | None:intergenic | 40.0% |
| ! | GGGAAAGAGGTCTTGTAATC+TGG | - | chr7_4:41529913-41529932 | Msa1154180:intron | 45.0% |
| ! | TAATCTGGAGTTGTGTCGAG+AGG | - | chr7_4:41529928-41529947 | Msa1154180:intron | 45.0% |
| GTTTCAACGGTTCCTTTGTC+GGG | - | chr7_4:41529973-41529992 | Msa1154180:CDS | 45.0% | |
| TTTCAACGGTTCCTTTGTCG+GGG | - | chr7_4:41529974-41529993 | Msa1154180:CDS | 45.0% | |
| GTAACCTAAGCCCGGAAAAA+AGG | - | chr7_4:41530137-41530156 | Msa1154180:intron | 45.0% | |
| CGACAAAAGAATCAACTGCG+GGG | - | chr7_4:41530171-41530190 | Msa1154180:intron | 45.0% | |
| ! | TTACTGTTGGCGGACGTTAT+GGG | + | chr7_4:41530205-41530224 | None:intergenic | 45.0% |
| ! | TTTACTGTTGGCGGACGTTA+TGG | + | chr7_4:41530206-41530225 | None:intergenic | 45.0% |
| ! | AGTCTTGTCCGACTCATATC+AGG | + | chr7_4:41530231-41530250 | None:intergenic | 45.0% |
| CACCCCTCTTCTATGATTGA+CGG | - | chr7_4:41530394-41530413 | Msa1154180:intron | 45.0% | |
| ACCCCTCTTCTATGATTGAC+GGG | - | chr7_4:41530395-41530414 | Msa1154180:intron | 45.0% | |
| TCCCCGTCAATCATAGAAGA+GGG | + | chr7_4:41530400-41530419 | None:intergenic | 45.0% | |
| TTCCCCGTCAATCATAGAAG+AGG | + | chr7_4:41530401-41530420 | None:intergenic | 45.0% | |
| CTTCTATGATTGACGGGGAA+TGG | - | chr7_4:41530401-41530420 | Msa1154180:intron | 45.0% | |
| TATGATTGACGGGGAATGGA+GGG | - | chr7_4:41530405-41530424 | Msa1154180:intron | 45.0% | |
| ! | GAAGGTGCAAAATCAAGCAG+GGG | + | chr7_4:41530504-41530523 | None:intergenic | 45.0% |
| ! | CTGAAGGTGCAAAATCAAGC+AGG | + | chr7_4:41530506-41530525 | None:intergenic | 45.0% |
| TGAAATAGGCGGTCTTTCGT+CGG | - | chr7_4:41530747-41530766 | Msa1154180:intron | 45.0% | |
| AATGGGGAATTGCTTGGCTA+AGG | - | chr7_4:41530815-41530834 | Msa1154180:intron | 45.0% | |
| ! | TGTGTAGTGTGTTGGTCCTT+TGG | - | chr7_4:41530979-41530998 | Msa1154180:intron | 45.0% |
| AATGCTTGTAGTCTCGGGAT+AGG | - | chr7_4:41531846-41531865 | Msa1154180:intron | 45.0% | |
| ATGCTTGTAGTCTCGGGATA+GGG | - | chr7_4:41531847-41531866 | Msa1154180:intron | 45.0% | |
| GGTAATAAGTGCCACATTCC+CGG | + | chr7_4:41531906-41531925 | None:intergenic | 45.0% | |
| ! | CTTTTGGTCCCAAGCTTCTT+TGG | + | chr7_4:41531930-41531949 | None:intergenic | 45.0% |
| AGAAGCTTGGGACCAAAAGT+TGG | - | chr7_4:41531931-41531950 | Msa1154180:intron | 45.0% | |
| ATCTACACCACCACTAGATC+GGG | + | chr7_4:41532493-41532512 | None:intergenic | 45.0% | |
| AAGCTATCCTGGAGAGCTTA+TGG | + | chr7_4:41532644-41532663 | None:intergenic | 45.0% | |
| AAGCTCTCCAGGATAGCTTA+TGG | - | chr7_4:41532645-41532664 | Msa1154180:intron | 45.0% | |
| ! | GCTGTTTCCATAAGCTATCC+TGG | + | chr7_4:41532655-41532674 | None:intergenic | 45.0% |
| TTGCAAATTTCAGCGCTGTG+TGG | - | chr7_4:41533012-41533031 | Msa1154180:intron | 45.0% | |
| TATGGTGCAATCACCTTGCA+AGG | + | chr7_4:41533044-41533063 | None:intergenic | 45.0% | |
| AGCACTCCCCTTAAATATGG+GGG | - | chr7_4:41533208-41533227 | Msa1154180:intron | 45.0% | |
| ACAAGCTTCTTCTCAAGCTC+TGG | + | chr7_4:41533448-41533467 | None:intergenic | 45.0% | |
| CTGAGGAACTGAATCAGCAA+TGG | + | chr7_4:41533473-41533492 | None:intergenic | 45.0% | |
| CAAGAATTCGCGACTTGTGA+GGG | + | chr7_4:41533548-41533567 | None:intergenic | 45.0% | |
| TCAAGAATTCGCGACTTGTG+AGG | + | chr7_4:41533549-41533568 | None:intergenic | 45.0% | |
| TTCTGCACTCCCCTTGAATA+TGG | - | chr7_4:41533819-41533838 | Msa1154180:five_prime_UTR | 45.0% | |
| !!! | TTTATTTATTTATTTTTTGA+TGG | - | chr7_4:41529595-41529614 | Msa1154180:CDS | 5.0% |
| !!! | TTATTTATTTATTTTTTGAT+GGG | - | chr7_4:41529596-41529615 | Msa1154180:CDS | 5.0% |
| TCTTCTCTTCTCCAAGCACG+AGG | - | chr7_4:41529409-41529428 | Msa1154180:three_prime_UTR | 50.0% | |
| AATACAGTGGACCTCGTGCT+TGG | + | chr7_4:41529423-41529442 | None:intergenic | 50.0% | |
| !! | GTGTGAGGGTGCTAGATTAC+TGG | + | chr7_4:41529544-41529563 | None:intergenic | 50.0% |
| ! | TACTGTTGGCGGACGTTATG+GGG | + | chr7_4:41530204-41530223 | None:intergenic | 50.0% |
| GATCAAACAGCAGCCGAGAT+TGG | - | chr7_4:41530269-41530288 | Msa1154180:intron | 50.0% | |
| CCCCGTCAATCATAGAAGAG+GGG | + | chr7_4:41530399-41530418 | None:intergenic | 50.0% | |
| CCCCTCTTCTATGATTGACG+GGG | - | chr7_4:41530396-41530415 | Msa1154180:intron | 50.0% | |
| CTATGATTGACGGGGAATGG+AGG | - | chr7_4:41530404-41530423 | Msa1154180:intron | 50.0% | |
| GTGCAAAATCAAGCAGGGGA+AGG | + | chr7_4:41530500-41530519 | None:intergenic | 50.0% | |
| GGACCAACACACTACACACT+TGG | + | chr7_4:41530977-41530996 | None:intergenic | 50.0% | |
| TTTGCCACAAAAAGACGGCG+CGG | + | chr7_4:41531061-41531080 | None:intergenic | 50.0% | |
| ATGAAGGGGAGGAGGTTTAG+GGG | + | chr7_4:41531488-41531507 | None:intergenic | 50.0% | |
| GATGAAGGGGAGGAGGTTTA+GGG | + | chr7_4:41531489-41531508 | None:intergenic | 50.0% | |
| AGATGAAGGGGAGGAGGTTT+AGG | + | chr7_4:41531490-41531509 | None:intergenic | 50.0% | |
| !! | CAACATGTGGAGTTTGCTGC+CGG | - | chr7_4:41531884-41531903 | Msa1154180:intron | 50.0% |
| !! | AACATGTGGAGTTTGCTGCC+GGG | - | chr7_4:41531885-41531904 | Msa1154180:intron | 50.0% |
| TTGGTCCCAAGCTTCTTTGG+TGG | + | chr7_4:41531927-41531946 | None:intergenic | 50.0% | |
| TTCTTTGCCCGATCTAGTGG+TGG | - | chr7_4:41532483-41532502 | Msa1154180:intron | 50.0% | |
| AATTTCAGCGCTGTGTGGTG+CGG | - | chr7_4:41533017-41533036 | Msa1154180:intron | 50.0% | |
| TGCAGGACTTCAGCACTTCA+TGG | - | chr7_4:41533347-41533366 | Msa1154180:intron | 50.0% | |
| GCAGGACTTCAGCACTTCAT+GGG | - | chr7_4:41533348-41533367 | Msa1154180:intron | 50.0% | |
| ! | CTTCTCAAGCTCTGGCTTGT+TGG | + | chr7_4:41533440-41533459 | None:intergenic | 50.0% |
| CGCGACTTGTGAGGGAAAAA+AGG | + | chr7_4:41533540-41533559 | None:intergenic | 50.0% | |
| TGCACTCCCCTTGAATATGG+TGG | - | chr7_4:41533822-41533841 | Msa1154180:five_prime_UTR | 50.0% | |
| ! | TTTGCCGCGCCGTCTTTTTG+TGG | - | chr7_4:41531054-41531073 | Msa1154180:intron | 55.0% |
| ATTTCAGCGCTGTGTGGTGC+GGG | - | chr7_4:41533018-41533037 | Msa1154180:intron | 55.0% | |
| GCACACGGATACCCCGACAA+AGG | + | chr7_4:41529988-41530007 | None:intergenic | 60.0% | |
| GAGGAGGTTTAGGGGTGAGG+GGG | + | chr7_4:41531480-41531499 | None:intergenic | 60.0% | |
| GGAGGAGGTTTAGGGGTGAG+GGG | + | chr7_4:41531481-41531500 | None:intergenic | 60.0% | |
| GGGAGGAGGTTTAGGGGTGA+GGG | + | chr7_4:41531482-41531501 | None:intergenic | 60.0% | |
| !! | GGAGTTTGCTGCCGGGAATG+TGG | - | chr7_4:41531892-41531911 | Msa1154180:intron | 60.0% |
| GGGGAGGAGGTTTAGGGGTG+AGG | + | chr7_4:41531483-41531502 | None:intergenic | 65.0% | |
| TGTGTGGTGCGGGCCTTGCA+AGG | - | chr7_4:41533028-41533047 | Msa1154180:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 41529240 | 41533848 | 41529240 | ID=Msa1154180;Name=Msa1154180 |
| chr7_4 | mRNA | 41529240 | 41533848 | 41529240 | ID=Msa1154180-mRNA-1;Parent=Msa1154180;Name=Msa1154180-mRNA-1;_AED=0.16;_eAED=0.16;_QI=346|0.8|0.83|1|0.8|0.66|6|344|163 |
| chr7_4 | exon | 41529240 | 41529736 | 41529240 | ID=Msa1154180-mRNA-1:exon:10116;Parent=Msa1154180-mRNA-1 |
| chr7_4 | exon | 41529958 | 41530080 | 41529958 | ID=Msa1154180-mRNA-1:exon:10115;Parent=Msa1154180-mRNA-1 |
| chr7_4 | exon | 41531109 | 41531231 | 41531109 | ID=Msa1154180-mRNA-1:exon:10114;Parent=Msa1154180-mRNA-1 |
| chr7_4 | exon | 41531330 | 41531401 | 41531330 | ID=Msa1154180-mRNA-1:exon:10113;Parent=Msa1154180-mRNA-1 |
| chr7_4 | exon | 41532252 | 41532355 | 41532252 | ID=Msa1154180-mRNA-1:exon:10112;Parent=Msa1154180-mRNA-1 |
| chr7_4 | exon | 41533586 | 41533848 | 41533586 | ID=Msa1154180-mRNA-1:exon:10111;Parent=Msa1154180-mRNA-1 |
| chr7_4 | five_prime_UTR | 41533586 | 41533848 | 41533586 | ID=Msa1154180-mRNA-1:five_prime_utr;Parent=Msa1154180-mRNA-1 |
| chr7_4 | five_prime_UTR | 41532273 | 41532355 | 41532273 | ID=Msa1154180-mRNA-1:five_prime_utr;Parent=Msa1154180-mRNA-1 |
| chr7_4 | CDS | 41532252 | 41532272 | 41532252 | ID=Msa1154180-mRNA-1:cds;Parent=Msa1154180-mRNA-1 |
| chr7_4 | CDS | 41531330 | 41531401 | 41531330 | ID=Msa1154180-mRNA-1:cds;Parent=Msa1154180-mRNA-1 |
| chr7_4 | CDS | 41531109 | 41531231 | 41531109 | ID=Msa1154180-mRNA-1:cds;Parent=Msa1154180-mRNA-1 |
| chr7_4 | CDS | 41529958 | 41530080 | 41529958 | ID=Msa1154180-mRNA-1:cds;Parent=Msa1154180-mRNA-1 |
| chr7_4 | CDS | 41529584 | 41529736 | 41529584 | ID=Msa1154180-mRNA-1:cds;Parent=Msa1154180-mRNA-1 |
| chr7_4 | three_prime_UTR | 41529240 | 41529583 | 41529240 | ID=Msa1154180-mRNA-1:three_prime_utr;Parent=Msa1154180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
